Mercurial > repos > iuc > trycycler_consensus

<macros>
    <token name="@TOOL_VERSION@">0.5.4</token>
    <token name="@PIPELINE@">
**Trycycler pipeline**

    ::

        Trycycler subsample: make maximally-independent read subsets of an appropriate depth.
                ⬇
        Trycycler cluster: carries out complete-linkage clustering of all contig sequences.
                ⬇
        Trycycler reconcile/msa: reconcile the contigs within each cluster and perform a multiple sequence alignment.
                ⬇
        Trycycler partition: split the reads between the different clusters.
                ⬇
        Trycycler consensus: generate a consensus contig sequence for each cluster.

    </token>
    <xml name="edam_ontology">
        <edam_topics>
            <edam_topic>topic_0196</edam_topic>
        </edam_topics>
        <edam_operations>
            <edam_operation>operation_0525</edam_operation>
        </edam_operations>
    </xml>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">trycycler</requirement>
        </requirements>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @misc{githubTrycycler,
                author = {Ryan, Wick},
                year = {2020},
                title = {Trycycler},
                publisher = {GitHub},
                journal = {GitHub repository},
                url = {https://github.com/rrwick/Trycycler},
                }
            </citation>
        </citations>
    </xml>
</macros>
author	iuc
date	Wed, 29 Mar 2023 20:24:15 +0000
parents	43af166bc01e
children	f31d376ce725