Mercurial > repos > iuc > ucsc_chainnet

annotate test-data/target.net @ 1:5b65a92be96c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainnet commit 89f973d7c4d89281b2773768202459b31a114087
author iuc
date Mon, 30 Jun 2025 10:51:06 +0000
parents 3a213e01bc7f
children
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3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
1 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
2 ##gapPenalties=axtChain O=400 E=30
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
3 net hg38.chr20:10004760-11615810 1611050
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
4 fill 49202 176 mm39.chr2:136351215-137822786 + 42266 172 id 13 score 4568 ali 172
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
5 fill 84589 137 mm39.chr2:136351215-137822786 + 87751 136 id 6 score 6961 ali 136
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
6 fill 87669 167 mm39.chr2:136351215-137822786 + 87101 168 id 7 score 6916 ali 167
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
7 fill 148667 69 mm39.chr2:136351215-137822786 + 158262 69 id 15 score 2152 ali 68
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
8 fill 266744 261 mm39.chr2:136351215-137822786 - 244295 318 id 3 score 13332 ali 256
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
9 fill 288114 161 mm39.chr2:136351215-137822786 + 260754 161 id 5 score 8091 ali 161
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
10 fill 288278 276 mm39.chr2:136351215-137822786 + 260289 312 id 4 score 9256 ali 268
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
11 fill 600994 130 mm39.chr2:136351215-137822786 + 546215 130 id 8 score 5978 ali 130
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
12 fill 640387 120 mm39.chr2:136351215-137822786 + 579921 120 id 14 score 3681 ali 120
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
13 fill 796556 102 mm39.chr2:136351215-137822786 + 722616 101 id 10 score 5873 ali 101
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
14 fill 879848 2177 mm39.chr2:136351215-137822786 - 821044 1970 id 2 score 64329 ali 1889
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
15 gap 880298 77 mm39.chr2:136351215-137822786 - 822602 0
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
16 gap 881628 27 mm39.chr2:136351215-137822786 - 821380 0
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
17 fill 890884 148 mm39.chr2:136351215-137822786 - 824476 150 id 11 score 5421 ali 148
3a213e01bc7f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
18 fill 1425778 120 mm39.chr2:136351215-137822786 + 1342678 120 id 12 score 4864 ali 120