Mercurial > repos > iuc > ucsc_chainnet

comparison test-data/input.chain @ 0:3a213e01bc7f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
author iuc
date Fri, 30 Aug 2024 17:53:50 +0000
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comparison
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-1:000000000000 0:3a213e01bc7f
1 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
2 ##gapPenalties=axtChain O=400 E=30
3 chain 64329 hg38.chr20:10004760-11615810 1611050 + 879848 882025 mm39.chr2:136351215-137822786 1471571 - 648557 650527 2
4 24 0 1
5 52 12 0
6 46 0 6
7 24 1 0
8 63 0 1
9 6 0 9
10 78 14 0
11 25 0 4
12 14 4 0
13 4 19 0
14 12 9 0
15 43 77 0
16 19 2 0
17 37 2 0
18 61 1 0
19 16 0 4
20 74 0 7
21 51 1 0
22 30 17 0
23 18 1 0
24 28 0 2
25 125 0 13
26 8 0 14
27 8 0 3
28 88 5 0
29 35 0 1
30 5 0 1
31 6 0 7
32 21 0 1
33 27 4 0
34 64 10 0
35 46 2 0
36 42 1 0
37 54 0 1
38 12 1 0
39 115 3 0
40 10 0 1
41 27 1 0
42 20 1 0
43 42 21 0
44 20 2 0
45 50 11 0
46 8 27 0
47 45 1 0
48 26 11 0
49 5 3 0
50 28 2 0
51 34 1 0
52 24 0 2
53 39 1 0
54 29 3 0
55 68 17 0
56 4 0 3
57 29
58
59 chain 13332 hg38.chr20:10004760-11615810 1611050 + 266744 267005 mm39.chr2:136351215-137822786 1471571 - 1226958 1227276 3
60 17 0 14
61 111 2 0
62 42 3 0
63 39 0 47
64 31 0 1
65 16
66
67 chain 9256 hg38.chr20:10004760-11615810 1611050 + 288278 288554 mm39.chr2:136351215-137822786 1471571 + 260289 260601 4
68 34 8 0
69 38 0 2
70 9 0 17
71 11 0 24
72 15 0 1
73 161
74
75 chain 8091 hg38.chr20:10004760-11615810 1611050 + 288114 288275 mm39.chr2:136351215-137822786 1471571 + 260754 260915 5
76 161
77
78 chain 6961 hg38.chr20:10004760-11615810 1611050 + 84589 84726 mm39.chr2:136351215-137822786 1471571 + 87751 87887 6
79 83 1 0
80 53
81
82 chain 6916 hg38.chr20:10004760-11615810 1611050 + 87669 87836 mm39.chr2:136351215-137822786 1471571 + 87101 87269 7
83 58 0 1
84 109
85
86 chain 5978 hg38.chr20:10004760-11615810 1611050 + 600994 601124 mm39.chr2:136351215-137822786 1471571 + 546215 546345 8
87 130
88
89 chain 5958 hg38.chr20:10004760-11615810 1611050 + 288132 288220 mm39.chr2:136351215-137822786 1471571 + 258580 258668 9
90 88
91
92 chain 5873 hg38.chr20:10004760-11615810 1611050 + 796556 796658 mm39.chr2:136351215-137822786 1471571 + 722616 722717 10
93 31 1 0
94 70
95
96 chain 5421 hg38.chr20:10004760-11615810 1611050 + 890884 891032 mm39.chr2:136351215-137822786 1471571 - 646945 647095 11
97 25 0 2
98 123
99
100 chain 4864 hg38.chr20:10004760-11615810 1611050 + 1425778 1425898 mm39.chr2:136351215-137822786 1471571 + 1342678 1342798 12
101 120
102
103 chain 4568 hg38.chr20:10004760-11615810 1611050 + 49202 49378 mm39.chr2:136351215-137822786 1471571 + 42266 42438 13
104 99 4 0
105 73
106
107 chain 3681 hg38.chr20:10004760-11615810 1611050 + 640387 640507 mm39.chr2:136351215-137822786 1471571 + 579921 580041 14
108 120
109
110 chain 2152 hg38.chr20:10004760-11615810 1611050 + 148667 148736 mm39.chr2:136351215-137822786 1471571 + 158262 158331 15
111 10 1 0
112 38 0 1
113 20
114
115 chain 1838 hg38.chr20:10004760-11615810 1611050 + 469454 469477 mm39.chr2:136351215-137822786 1471571 + 409807 409830 16
116 23
117
118 chain 1399 hg38.chr20:10004760-11615810 1611050 + 796671 796752 mm39.chr2:136351215-137822786 1471571 + 722717 722799 17
119 30 5 0
120 8 3 0
121 27 0 9
122 8
123
124 chain 1336 hg38.chr20:10004760-11615810 1611050 + 195854 195904 mm39.chr2:136351215-137822786 1471571 + 189780 189830 18
125 50
126
127 chain 1280 hg38.chr20:10004760-11615810 1611050 + 398052 398107 mm39.chr2:136351215-137822786 1471571 + 364812 364861 19
128 11 1 0
129 7 0 1
130 15 6 0
131 15
132
133 chain 1248 hg38.chr20:10004760-11615810 1611050 + 195952 195990 mm39.chr2:136351215-137822786 1471571 + 189050 189087 20
134 22 2 0
135 5 0 1
136 9
137
138 chain 1208 hg38.chr20:10004760-11615810 1611050 + 1121156 1121254 mm39.chr2:136351215-137822786 1471571 + 1062631 1062720 21
139 9 0 1
140 12 7 0
141 12 4 0
142 13 0 1
143 41
144
145 chain 1201 hg38.chr20:10004760-11615810 1611050 + 580524 580629 mm39.chr2:136351215-137822786 1471571 + 516292 516362 22
146 14 3 0
147 16 19 0
148 19 13 0
149 21
150
151 chain 1170 hg38.chr20:10004760-11615810 1611050 + 806859 806881 mm39.chr2:136351215-137822786 1471571 + 737566 737588 23
152 22
153
154 chain 1030 hg38.chr20:10004760-11615810 1611050 + 1532147 1532161 mm39.chr2:136351215-137822786 1471571 + 1423235 1423249 24
155 14
156
157 chain 1012 hg38.chr20:10004760-11615810 1611050 + 361832 361870 mm39.chr2:136351215-137822786 1471571 + 345076 345108 25
158 20 6 0
159 12