diff chainswap.xml @ 0:6a7085c7777e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainswap commit b01ca34a85a25cf8fd38bdc005dc2e00d33a2d17

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/chainswap.xml	Sun Jan 25 16:17:31 2026 +0000
@@ -0,0 +1,46 @@
+<tool id="ucsc_chainswap" name="chainSwap" version="@TOOL_VERSION@+galaxy0" profile="21.05" license="MIT">
+    <description>
+        Swap target and query in a chain.
+    </description>
+    <macros>
+        <token name="@TOOL_VERSION@">482</token>
+    </macros>
+    <xrefs>
+        <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
+    </xrefs>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">ucsc-chainswap</requirement>
+    </requirements>
+    <version_command><![CDATA[ echo "@TOOL_VERSION@" ]]></version_command>
+    <command detect_errors="exit_code"><![CDATA[
+    chainSwap
+        '$in_chain'
+        '$out'
+    ]]></command>
+    <inputs>
+        <param name="in_chain" format="chain" type="data" label="chain dataset" help="" />
+    </inputs>
+    <outputs>
+        <data name="out" format="chain" />
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <param name="in_chain" value="in.chain" />
+            <output name="out" file="out.chain" />
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+`chainSwap`_ is a tool to swap target with query in a `chain`_ file.
+
+For implementation details see chainSwap's `source code`_.
+
+.. _chainSwap: https://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER
+.. _chain: https://genome.ucsc.edu/goldenPath/help/chain.html
+.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/0d2aae0eda9aad8255bced9aa142e457f1a25c5d/src/hg/mouseStuff/chainSwap/chainSwap.c
+    ]]>    </help>
+    <citations>
+        <citation type="doi">10.1093/bib/bbs038</citation>
+    </citations>
+</tool>