Mercurial > repos > iuc > ucsc_maftoaxt

annotate test-data/1.maf @ 2:bb486fb0103d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftoaxt commit 90f598156d927cb63d1666dc011a49286cd0c705
author iuc
date Wed, 09 Jul 2025 09:45:08 +0000
parents 3a4256d4f079
children
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3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
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1 ##maf version=1
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
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2 a score=60426.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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3 s hg17.chr7 127471195 331 + 158628139 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCC-------------------------------AAATACT-GCCACTGATGTCCTG-----ATGGAGGTA-------TGAA-------------------AACATCCACTAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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4 s panTro1.chr6 129885076 331 + 161576975 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCC-------------------------------AAATACT-GCCACTGATGTCCTG-----ATGGAGGTA-------TGAA-------------------AACATCCACTAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
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5 s mm5.chr6 28904571 357 + 149721531 CTCCACTCTCGTTTGCTGTT----------------CTGTCACCATGGAAACAAA-CGAGGGTGGTCCAGTTACTATCTTGACTGCAGCTGGCAGTCAGTT-GCCACT-----CAGGAATAAGGCTATGCCATT-GATCCACTGAACCGTGATCTGGAAACCTGGCTGTTGTTT-------CAAGCCTTGGGGCCAGTTTGCGGTGTTACTCATGA--CTCTAAGATCGTGTGCTTG----CTGCAGGAAGAGACAGCAAGGGGGTTACATTTAAAAAGCCCCCAGTTTAGCTATAGGCAGGCCAACAGGTGTAAAAATACTCACTAGTAATGGGCTGAACTCATGGAGGTAGCATTAGTGAGACACTGTAACTGTTTTTTTAAAAATCACTAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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6 s rn3.chr4 56178191 282 + 187371129 CTTCACTCTCATTTGCTGTT----------------CTGTCACTATGGAGACAAACACAGGCTAGCCCAGTTACTATCTTGATCACAGCAGCT-GTCAGCTAGCTGCCACTCACAGGAATAAGGCCATACCATT-GATCCACTGAACCTTGATCTAGGAATTTGGC----------------------TGGGGCCAGTTTGCGGTGTCACTCATGA--CTCTAAGATTGTGTGTTTG----CTCCAGGAAGAGACGGCAAGAGGATTACCTTTAAAAGGTTC---------------------------------GGAGTCTAGCTGTAGACAGCCCA-----ATG--GGTA-------TAAC-------------------AATACTCACTAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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7
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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8 a score=8157.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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9 s hg17.chr7 127471526 58 + 158628139 AATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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10 s panTro1.chr6 129885407 58 + 161576975 AATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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11 s mm5.chr6 28904928 54 + 149721531 AA----CGTTTCATTGATTGCTCATCATTTAAAAAAAGAAATTCCTCAGTGGAAGAGG
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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13 a score=43613.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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14 s hg17.chr7 127471584 104 + 158628139 GAGATATTTGGggaaatt---ttgtatagactagctttcacgatgttagggaattattattgtgtgataatggtcttgcagttaca-cagaaattcttccttattttt
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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15 s panTro1.chr6 129885465 104 + 161576975 GAGACATTTGGggaaatt---ttgtatagactagctttcacgatgttagggagttattattgtgtgataatggtcttgcagttaca-cagaaattcttccttattttt
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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16 s mm5.chr6 28909125 102 + 149721531 GAGACATTTGGGGGAAATACGATGTATA------CTTTCATGATCTTAAAGAATTGCTATTGTTTGATAGTGATATTATGGTTAAATTAAAAAAAAACCCTTACTTTT
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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17 s rn3.chr4 56182196 99 + 187371129 GAGATATTTGGGGGAAATATGATGTGCA------CTTCCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAAA-TAAAAAAAAT--CTTAGTTGT
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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18 s canFam1.chr14 52864846 108 - 63549963 GAGATATTTGGGGGAATTTGAATGTAGTGTTGCTCTTTTGTGATGCTAAGAAATTATAATTGTCTGATGATAGTCTCGTGGTTATGGGGGAAATGCTTCCTTATTTTT
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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20 a score=63217.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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21 s hg17.chr7 127471688 183 + 158628139 tgggaa---gcaccaaag----tagggat---aaaatgtcatgatgtgtgcaatacactttaaaatgtttttg-----ccaaaataatt----------------aatgaagc--aaatatggaaa-ataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcatttaaaaa
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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22 s panTro1.chr6 129885569 183 + 161576975 tgggaa---acaccaaag----tagggat---aaaatgtcatgatgtgtgcaatacgctttaaaatatttttg-----ccaaaataatt----------------aatgaagc--aaatatggaaa-ataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcatttaaaaa
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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23 s mm5.chr6 28909227 176 + 149721531 CATAAA---ATACTCAAATATTTAGGGGTATGACAATGTCATAGTGTCTGCAATTTGCTTTAAAATAATTTTG-------AAAAC---------------------CTGAGGCTAAACTATGGGAA-ATAGCAATTATTACATATGGGTAATAAGTA-----TAACTCACTATATTATTTTTCACTAT----TGTGTTTGAAATTTTCATTTTAAAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
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24 s rn3.chr4 56182295 194 + 187371129 TAGAAA---ATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAG-ATTTTTAAATATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATGGGAA-GTGGTAATTGTTACATATGGGTAATAAGTA-----TAATTCGTTATATTATT-------------TTTCTTAGAATTTTTCATTTGAAAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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25 s canFam1.chr14 52865149 163 - 63549963 tagagacacaaactgaagtatttaaggat---gaaatgtcatgatgtttgcaattggctttaaaatattttag-----ccaaaa-agta----------------aatgaagc--aaatatgggaagacaataatcattaaatctaggtgaTGCATA---------------------------CTTTTCCATATGTTTGAAATTTTCATTTAAAAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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27 a score=8913.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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28 s hg17.chr7 127471872 40 + 158628139 ctttgagc-----tagacaccaggctatgagctaggagcatagca
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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29 s panTro1.chr6 129885753 40 + 161576975 ctttgagc-----tagacaccaggctatgagctaggagcatagca
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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30 s mm5.chr6 28910662 44 + 149721531 CTTTGTGCTTAGGTAGGCACTGAGCTCTTAAATTGGA-TACAGCG
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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31 s canFam1.chr14 52865538 40 - 63549963 CATCAtgc-----tagatcctggactatgagctgggtatatagca
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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33 a score=91878.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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34 s hg17.chr7 127471912 335 + 158628139 atgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa--------------------------------------------------ctc-aaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAGTTTTAAACATTTA------CCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaattttccctg-ggcacccatgtgttcttggcactggaaaagtaccggga
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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35 s panTro1.chr6 129885793 335 + 161576975 atgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa--------------------------------------------------ctc-aaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAGTTTTAAACATTTA------CCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttttcctg-ggcacccatgtgttcttggcactggaaaagtaccggga
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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36 s mm5.chr6 28910706 350 + 149721531 ATGAGCAA----------------------------------------------------------------------------------------------AAAAACAACAACAAAAAACAAACAAACAAAAAAACCAAAAACCAAAAACCAAAAAAACCTATAGCCTC-ACAGGGTGGGTTGTCTTTGAGGAACATGCATCCGCTAGAAAGTCCCAAGTACACTATGACAGTTG--CCCAGGCCCCGCCTTAAACCTGGTTTTCCTGGTTTCTTTCA---CATCATTACCACGAATATATTTCCTCAAGTTTAAAGAAAGTACCCCCTCCTTTCCAGT-GCCTCAAATCTAGAAGAATATTCATAGTGAAGT-GCA------------------------CAGCCGGGTGGTGCATGGTAAT-CTGGAAGTCACCTCTGCAAATCTTTCCTG----------------TTGGTGCTGTGAAGGCACCAGGA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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37 s rn3.chr4 56183448 420 + 187371129 ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC--------------------------------------------------CTC-ACAGGGTGGGTTGTCTTTGAGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGGTTTAAAAGAAGTC-CCACTCCTTTCCAGT-GCCCTAGATCTAGAAGCACATTCATAATGATGT-ACACTAACCCGA---------------CAGCTGTGTGGTATATGGTATC-CCGGAAGTCACCTCAGCAAACCTTTCCCGGGGAACCTACATGGTGTTGGTGCTGTGAAGGTACCAGGT
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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38 s canFam1.chr14 52865578 336 - 63549963 gtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt--------------------------------------------------cttgatggagcacacaACCTTTGGGGAACATGTTTCCATAAGAAAGTCTCCAATGTGATCTGATGGT-GCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACATTTTAAATATCTG-------CTTCCCGGTGGCCTTGAGTCTAGAGGAGTCCCCCCACTATGGTGGCACTAATACTGAAGGTCAGAAATAATCAGTTCTGTGGTGCATGTTGCCCCTGAGGTTCTGTTCGGGAAACTTCTTCTG-AGCAC----ATGCACCTGGCACTGCAAACGTACCAGGA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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39
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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40 a score=82819.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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41 s hg17.chr7 127472258 423 + 158628139 gatggccca-atccctgtcctct---taaaacctaagggaggagaTGGAAAGGGG-CACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATGGAGAGGCCCTAGTGGAAT-GGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTG-------CAATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta-aagggccaggtagaaaacattttaggctttctaagccaag--gcaaaat-tgaggatattacatgggtacttatacaacaagaataaacaatt---tacacaattttttgttgacagaattcaaaactttat----agacacagaaatgcaaatttcctgt
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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42 s panTro1.chr6 129886139 423 + 161576975 gatggccca-atccctgtcctct---taaaacctaagggaggagaTGGAAAGGGG-CACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATGGAGAGACCCTAGTGGAAT-GGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTG-------CAATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta-aagggccaggtagaaaacattttaggctttctaagccaag--gcaaaat-tgaggatattacatgggtacttatacaacaagaataaacaatt---tacacaattttttgttgacagaattcaaaactttat----agacacagaaatgtaaatttcctgt
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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43 s mm5.chr6 28911067 334 + 149721531 AATGGCAGAGGGCTCTGTTCTCT----------------------------------GTCCA---TAGACAAGGAAGC---------CTGCCAGTGG-----------------------TGGAGAGCAGGGCCTATGCAAAACAGGGGGGGTTCTGTGGGCAGAAGGGATGGACCTGACTCCAGGAACGCCCATA-AGAGACGGGCAGGACTGGGAGCCAGGAGCAGCCAGCGCA--------GGTGTGTGTAGGTTTCATAGTTT---------------------------GCAGGTTAGCAAACAATTCTCGCTTGGCAGGCCAAGA-GGGAAAT-AAAGGTTACCCCGTGGGTACTTAT---ACAAGAGAAAACAAG-------ACAATTTTTGGTTGACCAAATTCAGAACTTTATTTGAGGATGCTAAAGTTTTAATTTCTTAA
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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44 s rn3.chr4 56183879 340 + 187371129 AATGGCAGAGGCCCCTGTTCTCT----------------------------------GTCCA---TAGTCAAAGAAGC---------CTCTCAG----------------------A---TGGAGAGCAGGGCCTATGCAAAAG-AGGGGGCTTCTGTAGGCAGAAGGGATGGACTAGCCTCCGGACATAGCCATAGAGAGGCTGGCAGGACTGAGACCCAGGAGAAGCCAGCGCAGGTGTGCGGGCGTGTGTATATTTCATAGTTT---------------------------GCAGGTTGGCAAACAATTCCTGCTTTGCAGGCCAAGA-GGAAACT-GAAGGTGACCCCGTGAGTGCTTAC---ACAAGAGAAAACAAG-------ACAATTTTTGGTTGACCAAATTCAGAACTTTATTTGAGGATGCTAAAGTTTAAATTTCTTTT
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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45 s canFam1.chr14 52866108 405 - 63549963 GGAGACTTG-ATGCCTGCCTTCCACTTACAGCCTGTGGGCAGAGGTGGGAAGAGGTCACGCAAGCCAGTTGGAATGAGGGGAGTTGGCTGGAAAGGTGACCAGGACAAGCTACTTCAACCAGGAAGAAGAGACCCC---------GG--------TGCTTGGAGAAGGCCTGATTGAGCAGTCCTGCATGCCCGCCCAC-GACTGGCAGGAATAAAGACCCAGAAGAGCTAACGTG-------CAATGTA------TTTTCTAGTTCCAgggttggcaaactttctctctaagggtgggatgataaacattttaggcttttcagaccaagaggcgacatcagagggtat---gtaggt---------acaagagggaaaagttgcccccggaattttttg--gataaaattcaaaactttacttagggatgccaaaatgtaaacttcatat
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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47 a score=15522.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
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48 s hg17.chr7 127473809 97 + 158628139 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtgg-caggctcggttcaccaacgtcatttgc
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
parents:
diff changeset
49 s panTro1.chr6 129887686 97 + 161576975 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtgg-AAGGCTCGGTTCACCAACATCATTTGC
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
parents:
diff changeset
50 s canFam1.chr14 52866548 97 - 63549963 tatatttttcaactctttaaaaatgcaaaaaccattcctagc-tcggggccatggtggtcctggtggtggtcggatttggctcacccacataacttgc
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
parents:
diff changeset
51
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
parents:
diff changeset
52 a score=28088.0
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
parents:
diff changeset
53 s hg17.chr7 127473906 331 + 158628139 agttccccgCTTTATGTTATGGgttttgttttgttttgtttttttt-attgagacagagtttcactcttgttgcccaggctgtagtgcaatggtctgatcttggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct
3a4256d4f079 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt commit f12613ba8034a78d45054ec07a7cd6853dbb62aa
iuc
parents:
diff changeset
54 s panTro1.chr6 129887783 318 + 161576975 AGTTCCCCGCTTTATATTATGGGttttttttttttttttttttttttattgagacagagtttcactcttgttgcccaggctgtagtg--------------tggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcatcatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct