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view test-data/out_wl_paired.log @ 2:2cf36d9ea571 draft

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planemo upload commit f6178c9e071a2158a35b82a3607f6dc8a767675c
author iuc
date Mon, 16 Jul 2018 17:35:28 -0400
parents 8db56d2f8b72
children e654095ab143
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# output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_5.dat --read2-in=/tmp/tmpibtvD6/files/000/dataset_6.dat --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpibtvD6/files/000/dataset_8.dat
# job started at Sun Feb 25 10:50:16 2018 on bag -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18
# pid: 2385, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
# blacklist_tsv                           : None
# cell_number                             : False
# compresslevel                           : 6
# error_correct_threshold                 : 3
# expect_cells                            : 5
# extract_method                          : string
# filter_cell_barcodes                    : False
# log2stderr                              : False
# loglevel                                : 1
# method                                  : reads
# pattern                                 : CCCNNNNNNNNXXXXX
# pattern2                                : None
# plot_prefix                             : OUT
# prime3                                  : None
# random_seed                             : None
# read2_in                                : /tmp/tmpibtvD6/files/000/dataset_6.dat
# short_help                              : None
# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
# stdin                                   : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_5.dat' mode='r' encoding='UTF-8'>
# stdlog                                  : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_8.dat' mode='a' encoding='UTF-8'>
# stdout                                  : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
# subset_reads                            : 0
# timeit_file                             : None
# timeit_header                           : None
# timeit_name                             : all
# whitelist_tsv                           : None
2018-02-25 10:50:16,016 INFO Starting barcode extraction
2018-02-25 10:50:16,017 INFO Parsed 0 reads
2018-02-25 10:50:16,019 INFO Starting - whitelist determination
2018-02-25 10:50:17,208 INFO Finished - whitelist determination
2018-02-25 10:50:17,208 INFO Starting - finding putative error cell barcodes
2018-02-25 10:50:17,208 INFO Finished - finding putative error cell barcodes
2018-02-25 10:50:17,208 INFO Writing out whitelist
2018-02-25 10:50:17,208 INFO Parsed 100 reads
2018-02-25 10:50:17,208 INFO 100 reads matched the barcode pattern
2018-02-25 10:50:17,208 INFO Found 23 unique cell barcodes
# job finished in 1 seconds at Sun Feb 25 10:50:17 2018 --  2.35  0.08  0.00  0.00 -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18