Mercurial > repos > iuc > umi_tools_dedup

annotate test-data/out_paired.log @ 4:3002bdffadd5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5
author iuc
date Thu, 21 Jun 2018 15:19:39 -0400
parents a6477bafd522
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpAvWtMd/files/000/dataset_20.dat
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
2 # job started at Wed Jan 3 17:06:39 2018 on tzk-ThinkPad-T450s -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
3 # pid: 22903, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
4 # blacklist : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
5 # compresslevel : 6
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
6 # error_correct_cell : False
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
7 # extract_method : string
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
8 # filter_cell_barcode : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
9 # filter_cell_barcodes : False
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
10 # log2stderr : False
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
11 # loglevel : 1
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
12 # pattern : NNNXXX
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
13 # pattern2 : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
14 # prime3 : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
15 # quality_encoding : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
16 # quality_filter_mask : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
17 # quality_filter_threshold : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
18 # random_seed : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
19 # read2_in : input_read2.gz
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
20 # read2_out : out2.gz
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
21 # read2_stdout : False
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
22 # reads_subset : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
23 # reconcile : False
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
24 # retain_umi : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
25 # short_help : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
27 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_20.dat' mode='a' encoding='UTF-8'>
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
29 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
30 # timeit_file : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
31 # timeit_header : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
32 # timeit_name : all
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
33 # whitelist : None
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
34 2018-01-03 17:06:39,365 INFO Starting barcode extraction
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
35 2018-01-03 17:06:39,377 INFO Input Reads: 100
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
36 2018-01-03 17:06:39,377 INFO Reads output: 100
a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
iuc
parents:
diff changeset
37 # job finished in 0 seconds at Wed Jan 3 17:06:39 2018 -- 0.60 0.05 0.00 0.00 -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c