Mercurial > repos > iuc > umi_tools_dedup

annotate test-data/out_single.log @ 5:3f5355b993ba draft

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planemo upload commit 9a3aeb2c588f9f67824ea5568923ce70b048499a
author iuc
date Sat, 14 Jul 2018 06:13:51 -0400
parents a6477bafd522
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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a6477bafd522 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
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1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpAvWtMd/files/000/dataset_13.dat --stdout /tmp/tmpAvWtMd/files/000/dataset_14.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpAvWtMd/files/000/dataset_15.dat
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2 # job started at Wed Jan 3 17:06:20 2018 on tzk-ThinkPad-T450s -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1
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3 # pid: 22794, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
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4 # blacklist : None
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5 # compresslevel : 6
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6 # error_correct_cell : False
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7 # extract_method : string
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8 # filter_cell_barcode : None
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9 # filter_cell_barcodes : False
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10 # log2stderr : False
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11 # loglevel : 1
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12 # pattern : XXXNNN
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13 # pattern2 : None
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14 # prime3 : True
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15 # quality_encoding : phred33
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16 # quality_filter_mask : None
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17 # quality_filter_threshold : 10
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18 # random_seed : None
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19 # read2_in : None
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20 # read2_out : False
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21 # read2_stdout : False
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22 # reads_subset : None
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23 # reconcile : False
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24 # retain_umi : None
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25 # short_help : None
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26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
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27 # stdin : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_13.dat' mode='r' encoding='UTF-8'>
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28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_15.dat' mode='a' encoding='UTF-8'>
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29 # stdout : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_14.dat' mode='w' encoding='UTF-8'>
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30 # timeit_file : None
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31 # timeit_header : None
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32 # timeit_name : all
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33 # whitelist : None
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34 2018-01-03 17:06:20,360 INFO Starting barcode extraction
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35 2018-01-03 17:06:20,362 INFO Input Reads: 100
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36 2018-01-03 17:06:20,362 INFO Reads output: 72
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37 2018-01-03 17:06:20,362 INFO filtered: umi quality: 28
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38 # job finished in 0 seconds at Wed Jan 3 17:06:20 2018 -- 0.58 0.06 0.00 0.00 -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1