Mercurial > repos > iuc > umi_tools_dedup
view test-data/out_wl_paired.log @ 9:1692b1acebfd draft
"planemo upload commit 5d3fc4232e0e036ac1ed9e2c36adc41d6af4987f"
author | iuc |
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date | Tue, 10 Sep 2019 14:28:24 -0400 |
parents | c0691d1977dd |
children | 4098ab380097 |
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# output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_5.dat --read2-in=/tmp/tmpibtvD6/files/000/dataset_6.dat --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpibtvD6/files/000/dataset_8.dat # job started at Sun Feb 25 10:50:16 2018 on bag -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18 # pid: 2385, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64 # blacklist_tsv : None # cell_number : False # compresslevel : 6 # error_correct_threshold : 3 # expect_cells : 5 # extract_method : string # filter_cell_barcodes : False # log2stderr : False # loglevel : 1 # method : reads # pattern : CCCNNNNNNNNXXXXX # pattern2 : None # plot_prefix : OUT # prime3 : None # random_seed : None # read2_in : /tmp/tmpibtvD6/files/000/dataset_6.dat # short_help : None # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> # stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_5.dat' mode='r' encoding='UTF-8'> # stdlog : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_8.dat' mode='a' encoding='UTF-8'> # stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'> # subset_reads : 0 # timeit_file : None # timeit_header : None # timeit_name : all # whitelist_tsv : None 2018-02-25 10:50:16,016 INFO Starting barcode extraction 2018-02-25 10:50:16,017 INFO Parsed 0 reads 2018-02-25 10:50:16,019 INFO Starting - whitelist determination 2018-02-25 10:50:17,208 INFO Finished - whitelist determination 2018-02-25 10:50:17,208 INFO Starting - finding putative error cell barcodes 2018-02-25 10:50:17,208 INFO Finished - finding putative error cell barcodes 2018-02-25 10:50:17,208 INFO Writing out whitelist 2018-02-25 10:50:17,208 INFO Parsed 100 reads 2018-02-25 10:50:17,208 INFO 100 reads matched the barcode pattern 2018-02-25 10:50:17,208 INFO Found 23 unique cell barcodes # job finished in 1 seconds at Sun Feb 25 10:50:17 2018 -- 2.35 0.08 0.00 0.00 -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18