Mercurial > repos > iuc > umi_tools_extract

comparison test-data/out_paired.log @ 0:418b961e0576 draft

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planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
author iuc
date Thu, 10 Aug 2017 06:37:09 -0400
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children 79436b3019e9
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-1:000000000000 0:418b961e0576
1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_863.dat
2 # job started at Tue Aug 8 15:14:12 2017 on packer-test -- cba9bf6d-f8cd-49c4-8184-3f4a090cbc3e
3 # pid: 32709, system: Linux 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64
4 # log2stderr : False
5 # loglevel : 1
6 # pattern : NNNXXX
7 # pattern2 : None
8 # prime3 : False
9 # quality_encoding : None
10 # quality_filter_threshold : None
11 # random_seed : None
12 # read2_in : input_read2.gz
13 # read2_out : out2.gz
14 # short_help : None
15 # split : False
16 # stats : True
17 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
18 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
19 # stdlog : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_863.dat' mode='a' encoding='UTF-8'>
20 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
21 # timeit_file : None
22 # timeit_header : None
23 # timeit_name : all
24 Barcode UMI Sample Count
25 AAAAGT AAA AGT 1
26 TTTTTT TTT TTT 1
27 TTGGTT TTG GTT 1
28 AAGTTT AAG TTT 1
29 ATATAA ATA TAA 1
30 GTTTTT GTT TTT 4
31 GTTTTA GTT TTA 1
32 TATAGA TAT AGA 1
33 AAGTAT AAG TAT 1
34 TTATTT TTA TTT 1
35 AGATGA AGA TGA 1
36 TTTTAG TTT TAG 2
37 GTGTTT GTG TTT 1
38 GTATGT GTA TGT 1
39 AGTGTT AGT GTT 1
40 AGAAAT AGA AAT 1
41 TATAAA TAT AAA 1
42 TGTATC TGT ATC 1
43 TAAAAT TAA AAT 1
44 ATTATT ATT ATT 1
45 ATTTAG ATT TAG 1
46 TATATT TAT ATT 1
47 ATTTGG ATT TGG 1
48 AAAATA AAA ATA 1
49 AAGTTA AAG TTA 1
50 GTTGTA GTT GTA 1
51 TTTGAA TTT GAA 1
52 ATTTGA ATT TGA 1
53 TTTATA TTT ATA 2
54 ATACGT ATA CGT 1
55 GGTTAG GGT TAG 1
56 GGTGTT GGT GTT 1
57 TGGTTG TGG TTG 1
58 AGTTAT AGT TAT 1
59 GAGTAG GAG TAG 1
60 TGTGTT TGT GTT 1
61 TGAATT TGA ATT 1
62 TTTAGG TTT AGG 2
63 TAGATG TAG ATG 1
64 TTGGAT TTG GAT 1
65 TTGGAC TTG GAC 1
66 TGTATG TGT ATG 1
67 AGAGTG AGA GTG 1
68 AGAATA AGA ATA 1
69 TTGTTT TTG TTT 1
70 AATATA AAT ATA 1
71 TTATTA TTA TTA 1
72 TTAAAG TTA AAG 2
73 AGGAGT AGG AGT 1
74 ATAAGT ATA AGT 1
75 TTGTGG TTG TGG 1
76 GTATTA GTA TTA 1
77 AGTGGA AGT GGA 1
78 TTTGGG TTT GGG 1
79 TAAGAG TAA GAG 1
80 TTGGGA TTG GGA 1
81 TATAGG TAT AGG 1
82 TTTTTG TTT TTG 1
83 AAGAGG AAG AGG 1
84 GAGAGA GAG AGA 1
85 TTGGTG TTG GTG 1
86 TAGAGG TAG AGG 1
87 ATTTTG ATT TTG 1
88 TGGATG TGG ATG 1
89 ATTTTT ATT TTT 1
90 TTATAT TTA TAT 1
91 TGTTTG TGT TTG 1
92 GTTGGT GTT GGT 1
93 TCTTTA TCT TTA 1
94 ATTGTT ATT GTT 2
95 ATAAGA ATA AGA 1
96 TATCGA TAT CGA 1
97 TTTGTT TTT GTT 1
98 GTGTAT GTG TAT 1
99 AGTGAA AGT GAA 1
100 GTTGTG GTT GTG 1
101 TAGTGA TAG TGA 1
102 TATTGA TAT TGA 1
103 TTAATG TTA ATG 1
104 TTTAAA TTT AAA 2
105 AGAAAG AGA AAG 1
106 TTTTGT TTT TGT 1
107 TTATAG TTA TAG 1
108 AGGTGT AGG TGT 1
109 TTAGTT TTA GTT 1
110 TTTAAT TTT AAT 1
111 AGGATG AGG ATG 1
112 ATATAT ATA TAT 1
113 AGAGTT AGA GTT 1
114 GAGAAA GAG AAA 1
115 ATATGA ATA TGA 1
116 # job finished in 0 seconds at Tue Aug 8 15:14:12 2017 -- 0.41 0.02 0.00 0.00 -- cba9bf6d-f8cd-49c4-8184-3f4a090cbc3e