Mercurial > repos > iuc > umi_tools_extract
comparison test-data/out_wl_single.txt @ 3:475ee31c61d9 draft
planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
| author | iuc |
|---|---|
| date | Sun, 25 Feb 2018 13:08:17 -0500 |
| parents | |
| children | a472e995d157 |
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| 2:d1015c2516b7 | 3:475ee31c61d9 |
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| 1 # output generated by whitelist --bc-pattern=CCCCCCCCNNNNNNNN --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_1.dat --method=reads --plot-prefix=OUT --3prime | |
| 2 # job started at Sun Feb 25 10:49:56 2018 on bag -- cb0db520-8a4e-4040-aa88-93efc0718fa8 | |
| 3 # pid: 2217, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64 | |
| 4 # blacklist_tsv : None | |
| 5 # cell_number : False | |
| 6 # compresslevel : 6 | |
| 7 # error_correct_threshold : 1 | |
| 8 # expect_cells : False | |
| 9 # extract_method : string | |
| 10 # filter_cell_barcodes : False | |
| 11 # log2stderr : False | |
| 12 # loglevel : 1 | |
| 13 # method : reads | |
| 14 # pattern : CCCCCCCCNNNNNNNN | |
| 15 # pattern2 : None | |
| 16 # plot_prefix : OUT | |
| 17 # prime3 : True | |
| 18 # random_seed : None | |
| 19 # read2_in : None | |
| 20 # short_help : None | |
| 21 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> | |
| 22 # stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_1.dat' mode='r' encoding='UTF-8'> | |
| 23 # stdlog : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'> | |
| 24 # stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'> | |
| 25 # subset_reads : 0 | |
| 26 # timeit_file : None | |
| 27 # timeit_header : None | |
| 28 # timeit_name : all | |
| 29 # whitelist_tsv : None | |
| 30 ## 2018-02-25 10:49:56,061 INFO Starting barcode extraction | |
| 31 ## 2018-02-25 10:49:56,061 INFO Parsed 0 reads | |
| 32 ## 2018-02-25 10:49:56,062 INFO Starting - whitelist determination | |
| 33 ## 2018-02-25 10:49:57,383 INFO Finished - whitelist determination | |
| 34 ## 2018-02-25 10:49:57,383 INFO Starting - finding putative error cell barcodes | |
| 35 ## 2018-02-25 10:49:57,383 INFO Finished - finding putative error cell barcodes | |
| 36 ## 2018-02-25 10:49:57,383 INFO Writing out whitelist | |
| 37 AAAAAAAA AAAAAACA,AAACAAAA,AATAAAAA 3 1,1,1 | |
| 38 ACAAAAAC 2 | |
| 39 ACAACAAA 2 | |
| 40 TTACTTAA TTACTAAA 2 1 | |
| 41 ## 2018-02-25 10:49:57,383 INFO Parsed 100 reads | |
| 42 ## 2018-02-25 10:49:57,383 INFO 100 reads matched the barcode pattern | |
| 43 ## 2018-02-25 10:49:57,383 INFO Found 95 unique cell barcodes | |
| 44 # job finished in 1 seconds at Sun Feb 25 10:49:57 2018 -- 2.25 0.06 0.00 0.00 -- cb0db520-8a4e-4040-aa88-93efc0718fa8 |