Mercurial > repos > iuc > umi_tools_extract
comparison umi-tools_extract.xml @ 16:7accf7407811 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit b5b83fd1cf0a44edcd9a6cc7562a3add2f47bd3f"
| author | iuc |
|---|---|
| date | Sat, 23 Oct 2021 20:38:07 +0000 |
| parents | 27ac32a22ad2 |
| children |
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| 15:27ac32a22ad2 | 16:7accf7407811 |
|---|---|
| 85 <expand macro="input_types"> | 85 <expand macro="input_types"> |
| 86 <param argument="--reconcile-pairs" type="boolean" truevalue="--reconcile-pairs" falsevalue="" checked="false" label="Allow unpaired reads" help="Allow the presences of reads in read2 input that are not present in read1 input. This allows cell barcode filtering of read1s without considering read2s" /> | 86 <param argument="--reconcile-pairs" type="boolean" truevalue="--reconcile-pairs" falsevalue="" checked="false" label="Allow unpaired reads" help="Allow the presences of reads in read2 input that are not present in read1 input. This allows cell barcode filtering of read1s without considering read2s" /> |
| 87 </expand> | 87 </expand> |
| 88 <expand macro="fastq_barcode_extraction_options_macro"/> | 88 <expand macro="fastq_barcode_extraction_options_macro"/> |
| 89 | 89 |
| 90 <param argument="--whitelist" type="data" optional="true" format="tabular,tsv" label="Allowlist of accepted barcodes" /> | 90 <param argument="--whitelist" type="data" optional="true" format="txt,tabular,tsv" label="Allowlist of accepted barcodes" /> |
| 91 <param argument="--blacklist" type="data" optional="true" format="tabular,tsv" label="Denylist of accepted barcodes" /> | 91 <param argument="--blacklist" type="data" optional="true" format="txt,tabular,tsv" label="Denylist of accepted barcodes" /> |
| 92 <param argument="--error-correct-cell" type="boolean" truevalue="--error-correct-cell" falsevalue="" checked="false" label="Apply correction to cell barcodes?" help="This only applies if your barcode file has two columns output from the umi_tools whitelist command" /> | 92 <param argument="--error-correct-cell" type="boolean" truevalue="--error-correct-cell" falsevalue="" checked="false" label="Apply correction to cell barcodes?" help="This only applies if your barcode file has two columns output from the umi_tools whitelist command" /> |
| 93 | 93 |
| 94 <conditional name="quality"> | 94 <conditional name="quality"> |
| 95 <param name="quality_selector" type="select" label="Enable quality filter?" > | 95 <param name="quality_selector" type="select" label="Enable quality filter?" > |
| 96 <option value="false">No</option> | 96 <option value="false">No</option> |