Mercurial > repos > iuc > umi_tools_extract

comparison test-data/out_single.log @ 2:d1015c2516b7 draft

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planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
author iuc
date Wed, 10 Jan 2018 19:10:01 -0500
parents 79436b3019e9
children
comparison
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1:79436b3019e9 2:d1015c2516b7
1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpREDhtd/files/003/dataset_3766.dat --stdout /tmp/tmpREDhtd/files/003/dataset_3767.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpREDhtd/files/003/dataset_3768.dat 1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpAvWtMd/files/000/dataset_13.dat --stdout /tmp/tmpAvWtMd/files/000/dataset_14.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpAvWtMd/files/000/dataset_15.dat
2 # job started at Tue Aug 29 14:20:26 2017 on gaius -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393 2 # job started at Wed Jan 3 17:06:20 2018 on tzk-ThinkPad-T450s -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1
3 # pid: 21338, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64 3 # pid: 22794, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
4 # blacklist : None 4 # blacklist : None
5 # compresslevel : 6 5 # compresslevel : 6
6 # error_correct_cell : False 6 # error_correct_cell : False
7 # extract_method : string 7 # extract_method : string
8 # filter_cell_barcode : None 8 # filter_cell_barcode : None
19 # read2_in : None 19 # read2_in : None
20 # read2_out : False 20 # read2_out : False
21 # read2_stdout : False 21 # read2_stdout : False
22 # reads_subset : None 22 # reads_subset : None
23 # reconcile : False 23 # reconcile : False
24 # retain_umi : None
24 # short_help : None 25 # short_help : None
25 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> 26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
26 # stdin : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3766.dat' mode='r' encoding='UTF-8'> 27 # stdin : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_13.dat' mode='r' encoding='UTF-8'>
27 # stdlog : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3768.dat' mode='a' encoding='UTF-8'> 28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_15.dat' mode='a' encoding='UTF-8'>
28 # stdout : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3767.dat' mode='w' encoding='UTF-8'> 29 # stdout : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_14.dat' mode='w' encoding='UTF-8'>
29 # timeit_file : None 30 # timeit_file : None
30 # timeit_header : None 31 # timeit_header : None
31 # timeit_name : all 32 # timeit_name : all
32 # whitelist : None 33 # whitelist : None
33 2017-08-29 14:20:26,493 INFO Starting barcode extraction 34 2018-01-03 17:06:20,360 INFO Starting barcode extraction
34 2017-08-29 14:20:26,495 INFO Input Reads: 100 35 2018-01-03 17:06:20,362 INFO Input Reads: 100
35 2017-08-29 14:20:26,495 INFO Reads output: 72 36 2018-01-03 17:06:20,362 INFO Reads output: 72
36 2017-08-29 14:20:26,495 INFO filtered: umi quality: 28 37 2018-01-03 17:06:20,362 INFO filtered: umi quality: 28
37 # job finished in 0 seconds at Tue Aug 29 14:20:26 2017 -- 0.75 0.02 0.00 0.00 -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393 38 # job finished in 0 seconds at Wed Jan 3 17:06:20 2018 -- 0.58 0.06 0.00 0.00 -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1