diff test-data/out_wl_single.txt @ 11:a472e995d157 draft

"planemo upload commit 28e58376e1d70e38276873a7d5e2ab44db88c2c0"

--- a/test-data/out_wl_single.txt	Fri Aug 17 09:41:59 2018 -0400
+++ b/test-data/out_wl_single.txt	Tue Aug 27 17:10:51 2019 -0400
@@ -1,44 +1,4 @@
-# output generated by whitelist --bc-pattern=CCCCCCCCNNNNNNNN --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_1.dat --method=reads --plot-prefix=OUT --3prime
-# job started at Sun Feb 25 10:49:56 2018 on bag -- cb0db520-8a4e-4040-aa88-93efc0718fa8
-# pid: 2217, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
-# blacklist_tsv                           : None
-# cell_number                             : False
-# compresslevel                           : 6
-# error_correct_threshold                 : 1
-# expect_cells                            : False
-# extract_method                          : string
-# filter_cell_barcodes                    : False
-# log2stderr                              : False
-# loglevel                                : 1
-# method                                  : reads
-# pattern                                 : CCCCCCCCNNNNNNNN
-# pattern2                                : None
-# plot_prefix                             : OUT
-# prime3                                  : True
-# random_seed                             : None
-# read2_in                                : None
-# short_help                              : None
-# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
-# stdin                                   : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_1.dat' mode='r' encoding='UTF-8'>
-# stdlog                                  : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
-# stdout                                  : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
-# subset_reads                            : 0
-# timeit_file                             : None
-# timeit_header                           : None
-# timeit_name                             : all
-# whitelist_tsv                           : None
-## 2018-02-25 10:49:56,061 INFO Starting barcode extraction
-## 2018-02-25 10:49:56,061 INFO Parsed 0 reads
-## 2018-02-25 10:49:56,062 INFO Starting - whitelist determination
-## 2018-02-25 10:49:57,383 INFO Finished - whitelist determination
-## 2018-02-25 10:49:57,383 INFO Starting - finding putative error cell barcodes
-## 2018-02-25 10:49:57,383 INFO Finished - finding putative error cell barcodes
-## 2018-02-25 10:49:57,383 INFO Writing out whitelist
 AAAAAAAA	AAAAAACA,AAACAAAA,AATAAAAA	3	1,1,1
 ACAAAAAC		2	
 ACAACAAA		2	
 TTACTTAA	TTACTAAA	2	1
-## 2018-02-25 10:49:57,383 INFO Parsed 100 reads
-## 2018-02-25 10:49:57,383 INFO 100 reads matched the barcode pattern
-## 2018-02-25 10:49:57,383 INFO Found 95 unique cell barcodes
-# job finished in 1 seconds at Sun Feb 25 10:49:57 2018 --  2.25  0.06  0.00  0.00 -- cb0db520-8a4e-4040-aa88-93efc0718fa8