diff umi-tools_extract.xml @ 12:d5ff68d2d5ff draft

"planemo upload commit 5d3fc4232e0e036ac1ed9e2c36adc41d6af4987f"

--- a/umi-tools_extract.xml	Tue Aug 27 17:10:51 2019 -0400
+++ b/umi-tools_extract.xml	Tue Sep 10 14:28:00 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="umi_tools_extract" name="UMI-tools extract" version="@VERSION@.0">
+<tool id="umi_tools_extract" name="UMI-tools extract" version="@VERSION@.1">
     <description>Extract UMI from fastq files</description>
     <macros>
         <import>macros.xml</import>
@@ -105,24 +105,7 @@
                     represent the random positions and Xs to indicate the bc positions.
                     Bases with Ns will be extracted and added to the read name. Remaining
                     bases, marked with an X will be reattached to the read.">
-            <sanitizer invalid_char="">
-                <valid initial="string.letters,string.digits">
-                    <add value="!="/>
-                    <add value="-"/>
-                    <add value="_"/>
-                    <add value="."/>
-                    <add value="?"/>
-                    <add value="&lt;"/><!-- left triangle bracket -->
-                    <add value="&gt;"/><!-- right triangle bracket -->
-                    <add value="&#91;"/> <!-- left square bracket -->
-                    <add value="&#93;"/> <!-- right square bracket -->
-                    <add value="&#94;"/> <!-- caret -->
-                    <add value="&#123;"/> <!-- left curly -->
-                    <add value="&#125;"/> <!-- right curly -->
-                    <add value="&#40;"/> <!-- left parenthesis -->
-                    <add value="&#41;"/> <!-- right parenthesis -->
-                </valid>
-            </sanitizer>
+            <expand macro="barcode_sanitizer" />
         </param>
 
         <param name="prime3" argument="--3prime" type="boolean" label="Is the barcode at the 5' end?"