# output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpAvWtMd/files/000/dataset_20.dat # job started at Wed Jan 3 17:06:39 2018 on tzk-ThinkPad-T450s -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c # pid: 22903, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64 # blacklist : None # compresslevel : 6 # error_correct_cell : False # extract_method : string # filter_cell_barcode : None # filter_cell_barcodes : False # log2stderr : False # loglevel : 1 # pattern : NNNXXX # pattern2 : None # prime3 : None # quality_encoding : None # quality_filter_mask : None # quality_filter_threshold : None # random_seed : None # read2_in : input_read2.gz # read2_out : out2.gz # read2_stdout : False # reads_subset : None # reconcile : False # retain_umi : None # short_help : None # stderr : <_io.TextIOWrapper name='' mode='w' encoding='UTF-8'> # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'> # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_20.dat' mode='a' encoding='UTF-8'> # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'> # timeit_file : None # timeit_header : None # timeit_name : all # whitelist : None 2018-01-03 17:06:39,365 INFO Starting barcode extraction 2018-01-03 17:06:39,377 INFO Input Reads: 100 2018-01-03 17:06:39,377 INFO Reads output: 100 # job finished in 0 seconds at Wed Jan 3 17:06:39 2018 -- 0.60 0.05 0.00 0.00 -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c