# UMI-tools version: 1.1.2 # output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --extract-method=string --subset-reads=0 --knee-method=density --stdin=input_read1.gz --read2-in=input_read2.gz --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpcx2d26we/files/0/0/8/dataset_008b1843-bfa2-44fb-9d3c-52695bd9ce74.dat --log2stderr # job started at Tue Jul 13 15:21:12 2021 on MOLSYB009 -- ba3841c0-b2d5-4188-88ca-4ee241163293 # pid: 1155608, system: Linux 5.4.0-74-generic #83-Ubuntu SMP Sat May 8 02:35:39 UTC 2021 x86_64 # allow_threshold_error : False # blacklist_tsv : None # cell_number : False # compresslevel : 6 # ed_above_threshold : None # error_correct_threshold : 3 # expect_cells : 5 # extract_method : string # filtered_out : None # filtered_out2 : None # ignore_suffix : False # knee_method : density # log2stderr : True # loglevel : 1 # method : reads # pattern : CCCNNNNNNNNXXXXX # pattern2 : None # plot_prefix : OUT # prime3 : None # random_seed : None # read2_in : input_read2.gz # short_help : None # stderr : <_io.TextIOWrapper name='' mode='w' encoding='utf-8'> # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'> # stdlog : <_io.TextIOWrapper name='/tmp/tmpcx2d26we/files/0/0/8/dataset_008b1843-bfa2-44fb-9d3c-52695bd9ce74.dat' mode='a' encoding='UTF-8'> # stdout : <_io.TextIOWrapper name='' mode='w' encoding='utf-8'> # subset_reads : 0 # timeit_file : None # timeit_header : None # timeit_name : all # tmpdir : None # whitelist_tsv : None 2021-07-13 15:21:12,587 INFO Starting barcode extraction 2021-07-13 15:21:12,588 INFO Parsed 0 reads 2021-07-13 15:21:12,590 INFO Starting - whitelist determination 2021-07-13 15:21:14,249 INFO Finished - whitelist determination 2021-07-13 15:21:14,249 INFO Starting - finding putative error cell barcodes 2021-07-13 15:21:14,249 INFO building bktree 2021-07-13 15:21:14,249 INFO done building bktree 2021-07-13 15:21:14,249 INFO Finished - finding putative error cell barcodes 2021-07-13 15:21:14,249 INFO Top 1 cell barcodes passed the selected threshold 2021-07-13 15:21:14,249 INFO Writing out whitelist 2021-07-13 15:21:14,249 INFO Parsed 100 reads 2021-07-13 15:21:14,249 INFO 100 reads matched the barcode pattern 2021-07-13 15:21:14,249 INFO Found 23 unique cell barcodes 2021-07-13 15:21:14,249 INFO Found 15 total reads matching the selected cell barcodes 2021-07-13 15:21:14,249 INFO Found 85 total reads which can be error corrected to the selected cell barcodes # job finished in 1 seconds at Tue Jul 13 15:21:14 2021 -- 7.19 0.62 0.08 0.02 -- ba3841c0-b2d5-4188-88ca-4ee241163293