# output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpAvWtMd/files/000/dataset_13.dat --stdout /tmp/tmpAvWtMd/files/000/dataset_14.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpAvWtMd/files/000/dataset_15.dat # job started at Wed Jan 3 17:06:20 2018 on tzk-ThinkPad-T450s -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1 # pid: 22794, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64 # blacklist : None # compresslevel : 6 # error_correct_cell : False # extract_method : string # filter_cell_barcode : None # filter_cell_barcodes : False # log2stderr : False # loglevel : 1 # pattern : XXXNNN # pattern2 : None # prime3 : True # quality_encoding : phred33 # quality_filter_mask : None # quality_filter_threshold : 10 # random_seed : None # read2_in : None # read2_out : False # read2_stdout : False # reads_subset : None # reconcile : False # retain_umi : None # short_help : None # stderr : <_io.TextIOWrapper name='' mode='w' encoding='UTF-8'> # stdin : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_13.dat' mode='r' encoding='UTF-8'> # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_15.dat' mode='a' encoding='UTF-8'> # stdout : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_14.dat' mode='w' encoding='UTF-8'> # timeit_file : None # timeit_header : None # timeit_name : all # whitelist : None 2018-01-03 17:06:20,360 INFO Starting barcode extraction 2018-01-03 17:06:20,362 INFO Input Reads: 100 2018-01-03 17:06:20,362 INFO Reads output: 72 2018-01-03 17:06:20,362 INFO filtered: umi quality: 28 # job finished in 0 seconds at Wed Jan 3 17:06:20 2018 -- 0.58 0.06 0.00 0.00 -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1