Mercurial > repos > iuc > umi_tools_group

annotate test-data/out_wl_single.txt @ 3:7d886fe41f56 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 76cbd559320d2a639e35ed10cb2d9522a5a77ae0
author iuc
date Mon, 16 Apr 2018 16:37:49 -0400
parents 4325a02ea7a3
children 3b8fecdf9058
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
1 # output generated by whitelist --bc-pattern=CCCCCCCCNNNNNNNN --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_1.dat --method=reads --plot-prefix=OUT --3prime
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
2 # job started at Sun Feb 25 10:49:56 2018 on bag -- cb0db520-8a4e-4040-aa88-93efc0718fa8
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
3 # pid: 2217, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
4 # blacklist_tsv : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
5 # cell_number : False
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
6 # compresslevel : 6
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
7 # error_correct_threshold : 1
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
8 # expect_cells : False
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
9 # extract_method : string
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
10 # filter_cell_barcodes : False
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
11 # log2stderr : False
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
12 # loglevel : 1
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
13 # method : reads
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
14 # pattern : CCCCCCCCNNNNNNNN
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
15 # pattern2 : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
16 # plot_prefix : OUT
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
17 # prime3 : True
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
18 # random_seed : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
19 # read2_in : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
20 # short_help : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
21 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
22 # stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_1.dat' mode='r' encoding='UTF-8'>
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
23 # stdlog : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
24 # stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
25 # subset_reads : 0
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
26 # timeit_file : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
27 # timeit_header : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
28 # timeit_name : all
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
29 # whitelist_tsv : None
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
30 ## 2018-02-25 10:49:56,061 INFO Starting barcode extraction
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
31 ## 2018-02-25 10:49:56,061 INFO Parsed 0 reads
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
32 ## 2018-02-25 10:49:56,062 INFO Starting - whitelist determination
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
33 ## 2018-02-25 10:49:57,383 INFO Finished - whitelist determination
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
34 ## 2018-02-25 10:49:57,383 INFO Starting - finding putative error cell barcodes
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
35 ## 2018-02-25 10:49:57,383 INFO Finished - finding putative error cell barcodes
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
36 ## 2018-02-25 10:49:57,383 INFO Writing out whitelist
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
37 AAAAAAAA AAAAAACA,AAACAAAA,AATAAAAA 3 1,1,1
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
38 ACAAAAAC 2
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
39 ACAACAAA 2
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
40 TTACTTAA TTACTAAA 2 1
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
41 ## 2018-02-25 10:49:57,383 INFO Parsed 100 reads
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
42 ## 2018-02-25 10:49:57,383 INFO 100 reads matched the barcode pattern
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
43 ## 2018-02-25 10:49:57,383 INFO Found 95 unique cell barcodes
4325a02ea7a3 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
44 # job finished in 1 seconds at Sun Feb 25 10:49:57 2018 -- 2.25 0.06 0.00 0.00 -- cb0db520-8a4e-4040-aa88-93efc0718fa8