diff umi-tools_group.xml @ 17:428735be9764 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit bc1b362f6783d3fc0ed0f42c14687001d7ff5f7a

--- a/umi-tools_group.xml	Sat Sep 28 16:41:21 2024 +0000
+++ b/umi-tools_group.xml	Sat Oct 05 13:08:51 2024 +0000
@@ -1,9 +1,9 @@
 <tool id="umi_tools_group" name="UMI-tools group" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Extract UMI from fastq files</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements">
         <requirement type="package" version="1.21">samtools</requirement>
     </expand>
@@ -23,7 +23,7 @@
             -I '$input_file' -S grouped.bam
             @ADVANCED_OPTIONS@
             @LOG@
-            ## TODO using samtools sort is a workaround, for the following error that appears when Galaxy
+            ## using samtools sort is a workaround, for the following error that appears when Galaxy
             ## compares the generated file with the one in test-data
             ## `Converting history BAM to SAM failed: 'samtools returned with error 1: stdout=None, stderr=[main_samview] fail to read the header from "/tmp/tmpd8o61jykdedup_out6.bam".\n'. Will compare BAM files`
             ## may be dropped in the future
@@ -42,8 +42,8 @@
         <expand macro="log_input_macro"/>
     </inputs>
     <outputs>
-        <data format="bam" name="output" />
-        <data format="tabular" name="group_out">
+        <data format="bam" name="output" label="${tool.name} on ${on_string}: Tagged BAM"/>
+        <data format="tabular" name="group_out" label="${tool.name} on ${on_string}: Read groups">
             <filter>group_output</filter>
         </data>
         <expand macro="log_output_macro"/>