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changeset 5:dc7c79edb900 draft

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planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5
author iuc
date Thu, 21 Jun 2018 15:19:27 -0400
parents 10c037f6d0d1
children 507e71405354
files test-data/chr19_gene_tags.bam test-data/count_single_cells_gene_tag.tsv test-data/count_single_cells_gene_tag_wide.tsv test-data/count_single_gene_tag.tsv
diffstat 4 files changed, 51 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
Binary file test-data/chr19_gene_tags.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_cells_gene_tag.tsv	Thu Jun 21 15:19:27 2018 -0400
@@ -0,0 +1,23 @@
+gene	cell	count
+ENSG00000011304.18	ACAAGG	33
+ENSG00000011304.18	TTCACG	24
+ENSG00000065268.10	ACAAGG	4
+ENSG00000065268.10	TTCACG	11
+ENSG00000070404.9	TTCACG	1
+ENSG00000070423.17	ACAAGG	2
+ENSG00000070423.17	TTCACG	4
+ENSG00000099804.8	ACAAGG	5
+ENSG00000099804.8	TTCACG	4
+ENSG00000099821.13	ACAAGG	6
+ENSG00000099821.13	TTCACG	1
+ENSG00000099864.17	TTCACG	2
+ENSG00000105556.11	ACAAGG	2
+ENSG00000105556.11	TTCACG	3
+ENSG00000116017.10	ACAAGG	7
+ENSG00000116017.10	TTCACG	18
+ENSG00000172270.18	ACAAGG	9
+ENSG00000172270.18	TTCACG	3
+ENSG00000175221.14	ACAAGG	1
+ENSG00000175221.14	TTCACG	3
+ENSG00000198858.9	ACAAGG	1
+ENSG00000267751.5	TTCACG	1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_cells_gene_tag_wide.tsv	Thu Jun 21 15:19:27 2018 -0400
@@ -0,0 +1,14 @@
+gene	ACAAGG	TTCACG
+ENSG00000011304.18	33	24
+ENSG00000065268.10	4	11
+ENSG00000070404.9	0	1
+ENSG00000070423.17	2	4
+ENSG00000099804.8	5	4
+ENSG00000099821.13	6	1
+ENSG00000099864.17	0	2
+ENSG00000105556.11	2	3
+ENSG00000116017.10	7	18
+ENSG00000172270.18	9	3
+ENSG00000175221.14	1	3
+ENSG00000198858.9	1	0
+ENSG00000267751.5	0	1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_gene_tag.tsv	Thu Jun 21 15:19:27 2018 -0400
@@ -0,0 +1,14 @@
+gene	count
+ENSG00000011304.18	54
+ENSG00000065268.10	15
+ENSG00000070404.9	1
+ENSG00000070423.17	6
+ENSG00000099804.8	9
+ENSG00000099821.13	7
+ENSG00000099864.17	2
+ENSG00000105556.11	5
+ENSG00000116017.10	24
+ENSG00000172270.18	12
+ENSG00000175221.14	4
+ENSG00000198858.9	1
+ENSG00000267751.5	1