Mercurial > repos > iuc > umi_tools_whitelist

annotate test-data/out_single.log @ 18:e4e12f0b3af1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit bc1b362f6783d3fc0ed0f42c14687001d7ff5f7a
author iuc
date Sat, 05 Oct 2024 13:07:41 +0000
parents b911124762a8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpAvWtMd/files/000/dataset_13.dat --stdout /tmp/tmpAvWtMd/files/000/dataset_14.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpAvWtMd/files/000/dataset_15.dat
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
2 # job started at Wed Jan 3 17:06:20 2018 on tzk-ThinkPad-T450s -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
3 # pid: 22794, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
4 # blacklist : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
5 # compresslevel : 6
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
6 # error_correct_cell : False
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
7 # extract_method : string
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
8 # filter_cell_barcode : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
9 # filter_cell_barcodes : False
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
10 # log2stderr : False
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
11 # loglevel : 1
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
12 # pattern : XXXNNN
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
13 # pattern2 : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
14 # prime3 : True
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
15 # quality_encoding : phred33
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
16 # quality_filter_mask : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
17 # quality_filter_threshold : 10
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
18 # random_seed : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
19 # read2_in : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
20 # read2_out : False
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
21 # read2_stdout : False
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
22 # reads_subset : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
23 # reconcile : False
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
24 # retain_umi : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
25 # short_help : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
27 # stdin : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_13.dat' mode='r' encoding='UTF-8'>
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_15.dat' mode='a' encoding='UTF-8'>
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
29 # stdout : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_14.dat' mode='w' encoding='UTF-8'>
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
30 # timeit_file : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
31 # timeit_header : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
32 # timeit_name : all
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
33 # whitelist : None
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
34 2018-01-03 17:06:20,360 INFO Starting barcode extraction
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
35 2018-01-03 17:06:20,362 INFO Input Reads: 100
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
36 2018-01-03 17:06:20,362 INFO Reads output: 72
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
37 2018-01-03 17:06:20,362 INFO filtered: umi quality: 28
b911124762a8 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
iuc
parents:
diff changeset
38 # job finished in 0 seconds at Wed Jan 3 17:06:20 2018 -- 0.58 0.06 0.00 0.00 -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1