Mercurial > repos > iuc > umi_tools_whitelist
comparison test-data/out_paired.log @ 0:b911124762a8 draft
planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
| author | iuc |
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| date | Sun, 25 Feb 2018 13:07:58 -0500 |
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| -1:000000000000 | 0:b911124762a8 |
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| 1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpAvWtMd/files/000/dataset_20.dat | |
| 2 # job started at Wed Jan 3 17:06:39 2018 on tzk-ThinkPad-T450s -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c | |
| 3 # pid: 22903, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64 | |
| 4 # blacklist : None | |
| 5 # compresslevel : 6 | |
| 6 # error_correct_cell : False | |
| 7 # extract_method : string | |
| 8 # filter_cell_barcode : None | |
| 9 # filter_cell_barcodes : False | |
| 10 # log2stderr : False | |
| 11 # loglevel : 1 | |
| 12 # pattern : NNNXXX | |
| 13 # pattern2 : None | |
| 14 # prime3 : None | |
| 15 # quality_encoding : None | |
| 16 # quality_filter_mask : None | |
| 17 # quality_filter_threshold : None | |
| 18 # random_seed : None | |
| 19 # read2_in : input_read2.gz | |
| 20 # read2_out : out2.gz | |
| 21 # read2_stdout : False | |
| 22 # reads_subset : None | |
| 23 # reconcile : False | |
| 24 # retain_umi : None | |
| 25 # short_help : None | |
| 26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> | |
| 27 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'> | |
| 28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_20.dat' mode='a' encoding='UTF-8'> | |
| 29 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'> | |
| 30 # timeit_file : None | |
| 31 # timeit_header : None | |
| 32 # timeit_name : all | |
| 33 # whitelist : None | |
| 34 2018-01-03 17:06:39,365 INFO Starting barcode extraction | |
| 35 2018-01-03 17:06:39,377 INFO Input Reads: 100 | |
| 36 2018-01-03 17:06:39,377 INFO Reads output: 100 | |
| 37 # job finished in 0 seconds at Wed Jan 3 17:06:39 2018 -- 0.60 0.05 0.00 0.00 -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c |