diff test-data/out_wl_paired.log @ 0:b911124762a8 draft

planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
author iuc
date Sun, 25 Feb 2018 13:07:58 -0500
parents
children 345bdf4546fd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_paired.log	Sun Feb 25 13:07:58 2018 -0500
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+# output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_5.dat --read2-in=/tmp/tmpibtvD6/files/000/dataset_6.dat --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpibtvD6/files/000/dataset_8.dat
+# job started at Sun Feb 25 10:50:16 2018 on bag -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18
+# pid: 2385, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
+# blacklist_tsv                           : None
+# cell_number                             : False
+# compresslevel                           : 6
+# error_correct_threshold                 : 3
+# expect_cells                            : 5
+# extract_method                          : string
+# filter_cell_barcodes                    : False
+# log2stderr                              : False
+# loglevel                                : 1
+# method                                  : reads
+# pattern                                 : CCCNNNNNNNNXXXXX
+# pattern2                                : None
+# plot_prefix                             : OUT
+# prime3                                  : None
+# random_seed                             : None
+# read2_in                                : /tmp/tmpibtvD6/files/000/dataset_6.dat
+# short_help                              : None
+# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
+# stdin                                   : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_5.dat' mode='r' encoding='UTF-8'>
+# stdlog                                  : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_8.dat' mode='a' encoding='UTF-8'>
+# stdout                                  : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
+# subset_reads                            : 0
+# timeit_file                             : None
+# timeit_header                           : None
+# timeit_name                             : all
+# whitelist_tsv                           : None
+2018-02-25 10:50:16,016 INFO Starting barcode extraction
+2018-02-25 10:50:16,017 INFO Parsed 0 reads
+2018-02-25 10:50:16,019 INFO Starting - whitelist determination
+2018-02-25 10:50:17,208 INFO Finished - whitelist determination
+2018-02-25 10:50:17,208 INFO Starting - finding putative error cell barcodes
+2018-02-25 10:50:17,208 INFO Finished - finding putative error cell barcodes
+2018-02-25 10:50:17,208 INFO Writing out whitelist
+2018-02-25 10:50:17,208 INFO Parsed 100 reads
+2018-02-25 10:50:17,208 INFO 100 reads matched the barcode pattern
+2018-02-25 10:50:17,208 INFO Found 23 unique cell barcodes
+# job finished in 1 seconds at Sun Feb 25 10:50:17 2018 --  2.35  0.08  0.00  0.00 -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18