# HG changeset patch
# User iuc
# Date 1728133661 0
# Node ID e4e12f0b3af19d56119d54bec9ab6bd6dafc3334
# Parent 4c8a1c7d360801a51a23c06d75b001b651fd4384
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit bc1b362f6783d3fc0ed0f42c14687001d7ff5f7a
diff -r 4c8a1c7d3608 -r e4e12f0b3af1 macros.xml
--- a/macros.xml Sat Sep 28 16:40:06 2024 +0000
+++ b/macros.xml Sat Oct 05 13:07:41 2024 +0000
@@ -4,8 +4,8 @@
1.1.5
- 0
- 21.01
+ 1
+ 23.1
umi_tools
@@ -104,8 +104,8 @@
-
-
+
+
@@ -152,11 +152,11 @@
'input.bam' &&
+ samtools sort --no-PG '$input' -O BAM > 'input.bam' &&
samtools index -b 'input.bam' &&
#set $input_file = 'input.bam'
#else:
@@ -166,7 +166,7 @@
#end if
]]>
-
+
-
+
Extract cell barcodes from FASTQ files
-
macros.xml
+
-
+
extract_method_cond['extract_method'] == 'regex' and extract_method_cond['filtered_out_bool'] and input_type_cond['input_type'] in ['single', 'paired']
-
+
extract_method_cond['extract_method'] == 'regex' and extract_method_cond['filtered_out_bool'] and input_type_cond['input_type'] == 'paired'
-
+
extract_method_cond['extract_method'] == 'regex' and extract_method_cond['filtered_out_bool'] and input_type_cond['input_type'] == 'paired_collection'