comparison unicycler.xml @ 13:e022dff952df draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/unicycler commit f05d53efde2cd695accde1fd89799a30d17dbd6f

12:3e44ef016b45

<tool id="unicycler" name="Create assemblies with Unicycler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.09">
<description>pipeline for bacterial genomes</description>
    <macros>
        <token name="@TOOL_VERSION@">0.5.0</token>
        <token name="@VERSION_SUFFIX@">2</token>
    </macros>
    <edam_topics>
        <edam_topic>topic_0196</edam_topic>
    </edam_topics>
    <edam_operations>

    <xrefs>
        <xref type="bio.tools">unicycler</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">unicycler</requirement>
        <requirement type="package" version="1.15.1">samtools</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#for r in $reuse
    ln -s $r.reuse_file ${r.reuse_step}.gfa &&
#end for

13:e022dff952df

<tool id="unicycler" name="Create assemblies with Unicycler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.09">
<description>pipeline for bacterial genomes</description>
    <macros>
        <token name="@TOOL_VERSION@">0.5.1</token>
        <token name="@VERSION_SUFFIX@">0</token>
    </macros>
    <edam_topics>
        <edam_topic>topic_0196</edam_topic>
    </edam_topics>
    <edam_operations>

    <xrefs>
        <xref type="bio.tools">unicycler</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">unicycler</requirement>
        <requirement type="package" version="1.20">samtools</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#for r in $reuse
    ln -s $r.reuse_file ${r.reuse_step}.gfa &&
#end for