annotate test-data/test_02_uncondensed_tree.nh @ 2:8f6c7638eab2 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit 59c78982b11e280895f2f51c25ada4613968dc79"
author iuc
date Sun, 19 Dec 2021 15:53:23 +0000
parents 524cb8f7a69a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
524cb8f7a69a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"
iuc
parents:
diff changeset
1 ((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,Spain_Valencia4_2020,Chile_Santiago_op2d1_2020,Spain_Valencia5_2020,Chile_Santiago-1_2020,Chile_Santiago_op3d1_2020,Chile_Santiago_op4d1_2020:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,Shanghai_SH0032_2020,Vietnam_VR03-38142_2020,Vietnam_38142_2020:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,Australia_QLD01_2020,Shanghai_SH0002_2020,Shanghai_SH0003_2020,USA_CA7_2020,Australia_QLD04_2020,Singapore_4_2020:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,Shandong_LY006_2020,Shandong_LY004_2020,Shandong_LY008_2020:0)7:1,(Chile_Talca-1_2020,Chile_Talca-2_2020:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(USA_CA-CDPH-UC5_2020,USA_CA-CDPH-UC6_2020:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,USA_WA1_2020,Fujian_8_2020,Hangzhou_ZJU-08_2020:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,Japan_TY-WK-501_2020,Japan_TY-WK-521_2020:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,Beijing_235_2020,Beijing_231_2020,Beijing_105_2020:0)16:2,Wuhan_WH04_2020,Wuhan_HBCDC-HB-03_2020,Hangzhou_ZJU-02_2020,Shanghai_SH0024_2020,Australia_NSW01_2020,Taiwan_3_2020,Taiwan_NTU01_2020,Belgium_GHB-03021_2020,Shanghai_SH0043_2020,Shanghai_SH0013_2020:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,USA_CA9_2020,USA_CA-CDPH-UC4_2020:0)17:1,(Australia_NSW08_2020,Australia_NSW10_2020:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(Germany_NRW-08_2020,Germany_NRW-01_2020,Netherlands_Limburg_4_2020:0)21:2)20:2,Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,Singapore_2_2020,Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(Shanghai_SH0022_2020,Shanghai_SH0023_2020:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,USA_CA8_2020,Wuhan_HBCDC-HB-02_2019:0)39:1,(Australia_NSW03_2020,Australia_VIC03_2020:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,Chongqing_IVDC-CQ-001_2020,Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(USA_CA3_2020,USA_CA4_2020:0)45:1,Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(England_200940527_2020,England_200990725_2020,England_200990724_2020:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(Finland_FIN01032020_2020,Finland_FIN-274_2020,Finland_FIN03032020B_2020:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(Netherlands_Dalen_1363624_2020,Netherlands_Loon_op_zand_1363512_2020:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((England_20100121006_2020,England_20100121007_2020:0)62:2,England_20100004706_2020,England_20100004806_2020,England_20100005406_2020,England_200990660_2020:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(France_HF1995_2020,France_HF2239_2020:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,Netherlands_Utrecht_6_2020,Netherlands_Utrecht_1363628_2020:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,France_HF2196_2020,Switzerland_GE6679_2020,Switzerland_BE2536_2020,Switzerland_GE4135_2020:0)67:1,(Hungary_mbl1_2020:1,Switzerland_GE5373_2020,Switzerland_GE3121_2020,Panama_328677_2020,Georgia_Tb-712_2020,Spain_Galicia201663_2020:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(Netherlands_Limburg_3_2020,Netherlands_Utrecht_2_2020:0)70:2,(Switzerland_GR2988_2020,Switzerland_GR3043_2020:0)71:1,(Switzerland_VD0503_2020,Switzerland_VD5615_2020:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,Switzerland_GE8102_2020,Brazil_SPBR-08_2020,Brazil_SPBR-13_2020:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,Switzerland_GE1402_2020,Switzerland_AG7120_2020,Netherlands_Helmond_1363548_2020:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,Switzerland_GE3895_2020,Switzerland_GE0199_2020,Switzerland_BL0902_2020,Switzerland_GE9586_2020,Switzerland_1000477806_2020,Switzerland_BS0914_2020:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(Netherlands_NoordHolland_1_2020,Netherlands_Utrecht_10_2020,Germany_NRW-011_2020,Netherlands_Utrecht_13_2020,Netherlands_Gelderland_3_2020,Finland_FIN-508_2020,Brazil_SPBR-04_2020,Brazil_SPBR-07_2020,Netherlands_Utrecht_4_2020,Netherlands_Limburg_2_2020,Brazil_SPBR-03_2020,Netherlands_Utrecht_5_2020,Netherlands_Gelderland_1_2020,Ireland_Dublin-19072_2020,Netherlands_Utrecht_7_2020,Netherlands_Overijssel_1_2020:0)78:1,(Belgium_UMF-03025_2020:0,(Belgium_DBD-03024_2020,Belgium_QKJ-03015_2020:0)80:1)79:1,Mexico_CDMX-InDRE_01_2020,Vietnam_39607_2020,Netherlands_Overijssel_2_2020,Switzerland_1000477796_2020,England_20099038206_2020,Vietnam_CM296_2020,Vietnam_CM295_2020:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,Switzerland_TI9486_2020,France_N2223_2020,Netherlands_Utrecht_3_2020:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,France_B2337_2020,Finland_FIN-455_2020,France_B2336_2020,France_B2335_2020,France_B2343_2020,France_B2346_2020:0)83:2,Italy_CDG1_2020,Netherlands_Zeewolde_1365080_2020,Georgia_Tb-477_2020,Japan_SMU-0311S2_2020,Brazil_SPBR-01_2020,Ireland_Limerick-19934_2020,Brazil_SPBR-06_2020,Brazil_SPBR-05_2020,Brazil_SPBR-09_2020,France_GE1973_2020,Ireland_Limerick-19933_2020,Denmark_SSI-09_2020,Ireland_Limerick-19935_2020,Netherlands_Utrecht_11_2020,Netherlands_Utrecht_8_2020:0)60:1,Finland_FIN-114_2020,Germany_BavPat1_2020,Shanghai_SH0014_2020:0)59:3,Wuhan_HBCDC-HB-03_2019,Wuhan_IVDC-HB-01_2019,Wuhan_WIV06_2019,Wuhan_WIV04_2019,Wuhan_IPBCAMS-WH-04_2019,Wuhan_IPBCAMS-WH-02_2019,Wuhan_WH03_2020,Zhejiang_WZ-02_2020,Nonthaburi_61_2020,Nonthaburi_74_2020,Hangzhou_ZJU-05_2020,Hangzhou_HZ-1_2020,Finland_1_2020,England_200641094_2020,England_200690756_2020,Japan_NA-20-05-1_2020,Taiwan_CGMH-CGU-01_2020,Japan_OS-20-07-1_2020,Chongqing_ZX01_2020,Jiangsu_IVDC-JS-001_2020,Hangzhou_HZCDC0001_2020,Hangzhou_ZJU-04_2020,Jiangsu_JS03_2020,USA_CA6_2020,Taiwan_4_2020,France_RA739_2020,England_200690300_2020:0)1:0;