view test-data/test_18_all_paths.txt @ 0:524cb8f7a69a draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"

1	
2	C24034T
England/BRIS-1853249/2020|20-04-02	C29518T
NPL/61-TW/2020|MT072688.1|20-01-13	
3	C875T
Wales/PHWC-25B04/2020|20-03-24	A20637G
Wales/LIVE-A6831/2020|20-03-16	T14859C
Scotland/EDB354/2020|20-03-30	C7423T,A29780C
5	C20270T
England/SHEF-BFF8B/2020|20-03-25	C1473T
England/SHEF-BFF21/2020|20-03-25	A18671G,A29683T
8	T4949C
England/SHEF-BFFC7/2020|20-03-25	G28027T
England/PHEC-1E01E/2020|20-04-03	C22445T
9	C29635T
DP0476/2020|LC571003.1|20-02-16	C29592T
DP0191/2020|LC570980.1|20-02-15	A3854G
10	C14805T,G26144T
11	T17247C
12	C12400T
Switzerland/100159/2020|LR884273.1|20-03-16	C16995T
England/LOND-126031F/2020|20-03-15	A20511G
13	C8078T
USA/NY-QDX-1999/2020|MW190795.1|20-03-16	G10754A
USA/NY-QDX-1969/2020|MW190709.1|20-03-15	
Scotland/CVR44/2020|20-03-13	G443A,A1587G
Scotland/CVR207/2020|20-03-18	C988T,G12832A
England/ALDP-9EE3AC/2020|20-05-06	G20991T,C23707T
England/CAMB-8042A/2020|20-04-10	A2480G,C2558T,A4015T
SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29	G5572T,C28311T
28	C241T,C3037T,C14408T,A23403G
England/BRIS-125347/2020|20-03-27	G7042T,G8861T
IND/763/2020|MT577009.1|20	C4809T
31	G25429T
England/CAMB-76515/2020|20-03-29	C16289T,T25429G
England/LEED-2A8D10/2020|20-03-31	C13730T,C25916T
35	A10874G,C25916T,T26677C
36	G25440A,G29745T
Scotland/EDB2049/2020|20-04-18	T25916C
Scotland/EDB2100/2020|20-04-19	
England/CAMB-1AC7D3/2020|20-04-22	A13863G
38	G17278T,C19610T,T26906C,G29688T,G29757T
Scotland/CVR2381/2020|20-04-13	C1848T
Scotland/CVR2197/2020|20-04-11	G21776T
Scotland/CVR1519/2020|20-04-03	A6441G,A28841G
England/NORW-E8C37/2020|20-04-13	C3602T,C11460T,A24232G
43	G1589A,G29474T
Wales/PHWC-3122E/2020|20-04-10	A22457G
Wales/PHWC-1645EC/2020|20-05-10	A11438G
England/PHEC-127E8/2020|20-03-28	G21538T
England/CAMB-75BD8/2020|20-03-29	C18060T,G28514T
47	C25665T,G28325T
USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29	C15540T
USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29	G16075T
49	G3871T
USA/WI-UW-26/2020|MT706147.1|20-03-24	A29797G
USA/IL-QDX-2568/2020|MW191367.1|20-03-14	C19862T
USA/WI-UW-558/2020|MT750137.1|20-06-25	A696C
53	G25563T
54	C8389T
57	C601T,G12832T,G27915A
USA/COVID20-0537/2020|MT981422.1|20-06-04	C29503T
USA/COVID20-1129/2020|MW067826.1|20-07-10	A28165G
CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18	G1319A,G2945A,C10156T,T17208C
England/LEED-2A87C7/2020|20-04-03	G3230A,C23453T
EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02	C1997T
61	C1059T
62	C24381T
USA/CA-CZB-1434/2020|MT628140.1|20-03-25	
USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09	C23718T
63	C24442T
USA/VA-DCLS-0676/2020|MT911804.1|20-04	
USA/MI-QDX-476/2020|MW064508.1|20-03-23	
USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29	T20037C,G28073T
67	T1059C,C1594T,C11109T
England/CAMB-7A7DF/2020|20-04-02	G8578A
Netherlands/NA_18/2020|LR878352.1|20-03-09	C23506T
68	C18555T,C28892T
USA/VA-DCLS-1557/2020|MW208010.1|20-08	C25207T
USA/FL-BPHL-1018/2020|MT966219.1|20-07-17	A6035G
72	A3103C,C5893T,G24368T,A28117T
England/CAMB-83FBD/2020|20-04-22	
England/CAMB-1AD004/2020|20-04-30	A28356G
Wales/PHWC-2E0A2/2020|20-04-10	C18568T,G24368T,C24621T
USA/WA-S2746/2020|MT947577.1|20-07-19	C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T
USA/UT-05590/2020|MW084605.1|20-06-01	A2151G,G19542T,C23551T,C28821A
Netherlands/NA_588/2020|LR883860.1|20	G18281A,A20742G,A20755C,G25784T
86	C11916T
USA/NY-QDX-1993/2020|MW190794.1|20-03-18	G28376T
89	G26020T
USA/FL-BPHL-0321/2020|MT757040.1|20-04-16	T29128C
USA/FL-BPHL-1841/2020|MW206510.1|20-04-08	C4012T
90	G1186A,T4033C,C8986T,C25413T,C28674T,G28857T
USA/MN-MDH-1583/2020|MT997701.1|20-05-28	C8109T
USA/MN-MDH-1585/2020|MT997703.1|20-05-22	T12925C
91	C18998T,G29540A
USA/VA-DCLS-1147/2020|MT992749.1|20-04	A20553G,G22487C
USA/NY-QDX-2365/2020|MW191144.1|20-03-16	C28863T
USA/CA-CZB-2139/2020|MT750510.1|20-05-21	C5540A,C19145T
USA/NC-QDX-174/2020|MT786825.1|20-04-27	C10458T,C18693A,G26828T
England/MILK-6166F0/2020|20-07-05	C66A,C4455T,C7768T,A8773G,C17304T,T22912G,T24805C,C26270T
USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06	C13252T
103	C16650T,A20675T,G29179T,G29779T
KOR/YS006/2020|MW345824.1|20-06-04	C26261T
KOR/YS008/2020|MW345825.1|20-06-07	
USA/NMDOH-2020308468/2020|MW228235.1|20-08-24	A12820G,C16762T,A17637G,C20762T,C28887T
USA/CA-CZB-1793/2020|MT750334.1|20-04-16	C379A,A20503G
108	C27964T
109	C10319T,A18424G,C21304T,G25907T,C28472T,C28869T
USA/AK-PHL660/2020|MW173157.1|20-06-27	A16872C
USA/WI-UW-1194/2020|MT981478.1|20-08-11	G9928T,C10377T
USA/MN-QDX-981/2020|MW065078.1|20-03-15	C28833T
USA/CA-QDX-2685/2020|MW191430.1|20-03-17	C9967T,G17590T
117	G17808T
USA/MN-QDX-1328/2020|MW065415.1|20-03-15	C9693T
USA/TX-DSHS-1210/2020|MW246004.1|20-03-18	C15352T
118	C24378T
USA/UT-00495/2020|MT444543.1|20-04-02	G27717A
USA/UT-00353/2020|MT444564.1|20-03-27	T11131A
USA/IL-UW-1064/2020|MT929016.1|20-07-26	G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T
USA/WI-UW-1119/2020|MT929068.1|20-07-27	A19899T,A21464G
123	T8788C,G26951A
England/CAMB-7771E/2020|20-03-30	C4586T
England/CAMB-7DC91/2020|20-04-05	C4321T
USA/TX-DSHS-1232/2020|MW309089.1|20-03-25	C7528T,G8213A
USA/MD-MDH-0071/2020|MT827237.1|20-05-25	C775T,C23683T,C27923T,G28975T
USA/WA-QDX-235/2020|MT806806.1|20-04-27	A12557C,A23534T
127	C1917T
USA/VA-DCLS-0426/2020|MT679166.1|20-05	C8327T
USA/VA-DCLS-0187/2020|MT450889.1|20-04	G29431T
USA/UT-QDX-2224/2020|MW191025.1|20-03-13	C23191T,A25910C
130	C10582T
Scotland/EDB2451/2020|20-04-23	C1076T,T10963A
Switzerland/240029/2020|LR880608.1|20-08-10	C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,T27622C,G27632T,C27804T,C28830A,G29402T,G29779T
134	C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T
England/RAND-12B3F28/2021|21-02-09	
England/RAND-12B3CF4/2021|21-02-09	
USA/MN-MDH-1596/2020|MT997714.1|20-05-12	T9070C,C20325T
England/LIVE-A91F7/2020|20-03-25	T13006C,C19186T,C25688T
146	G3892T
USA/MA_MGH_00458/2020|MT520347.1|20-04-04	G26787A
USA/MA_MGH_00445/2020|MT520273.1|20-04-01	G20062T
USA/NMDOH-2020126568/2020|MW006567.1|20-06-15	C16428T,C20555T,C21772T
USA/MN-MDH-1464/2020|MT919997.1|20-03-24	C3044T,G25523T,T27869C
152	C66T,C17069T,C26801T
USA/MD-MDH-0129/2020|MT937319.1|20-07-08	C13761T
USA/TX-DSHS-1524/2020|MW349179.1|20-06-23	A26864T
USA/WA-UW-6327/2020|MT412324.1|20-04-02	C5240G,C26625T
154	C27847T
USA/MI-QDX-371/2020|MW064412.1|20-03-23	A2948G
USA/MI-QDX-298/2020|MW064340.1|20-03-21	C6628T
USA/TX-QDX-261/2020|MT806804.1|20-05-01	T8041C,C18029T,G22225T
USA/TX-DSHS-0675/2020|MW093567.1|20-07-16	C335T,G526C,T16425G
USA/WI-UW-994/2020|MT846680.1|20-07-20	T6905G,C13994T,C17518T,G21724T,G23120T,C25667T
England/BRIS-127AD7/2020|20-04-16	C1968T,G3638T,G28808T,G29434C,G29705T
USA/WI-UW-522/2020|MT750102.1|20-06-24	C5310T,C12294T,C25511T
USA/DC-HP00089/2020|MT509482.1|20-03-31	C9510T,C11919T
USA/IL-UW-1065/2020|MT929017.1|20-04-20	C5183T,G28878T
164	C25976A
USA/MI-QDX-620/2020|MW064645.1|20-03-17	G3091A
USA/MI-QDX-595/2020|MW064630.1|20-03-18	C18981T
165	C7851T,C20233T
England/BRIS-12D9F2/2020|20-05-06	A20262G
England/BRIS-12B156/2020|20-05-08	A13707G
USA/WA-QDX-2548/2020|MW191307.1|20-03-16	C25572T,G29747T
USA/COVID20-1144/2020|MW067817.1|20-07-10	G2286A,A4197G,G7954T,A10552G,T25577G,A28715T
USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01	C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G26730T,G27955A,C28854T
172	C1887T
USA/CA-QDX-2032/2020|MW190749.1|20-03-17	G533A
USA/CA-QDX-2576/2020|MW191310.1|20-03-16	A27979T
Wales/PHWC-26B12/2020|20-03-29	C829T,G28371T
USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09	T3037C,C10851T
USA/TX-DSHS-1428/2020|MW326536.1|20-06-23	C1734T,G12160T,C23664T
USA/TX-DSHS-0051/2020|MW039116.1|20-05-09	G1495T,T7332C,T7831A,G28845T
Northern_Ireland/NIRE-1021DD/2020|20-03-14	A6360G,G20709T
Scotland/EDB6052/2020|20-05-08	G18213T,A18818G
184	C9286T,G28899C
England/CAMB-7FBCF/2020|20-04-16	A12556G
England/CAMB-784BC/2020|20-04-06	A13852G
B90|LR898037.1|?	C6406T,G18972A,A21360C
ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09	G7295T,C28290T
191	C2416T
USA/FL-BPHL-1462/2020|MW040672.1|20-04-20	G26233T,C27881T
193	G8371T
BHR/920262933_S19_L001/2020|MW228054.1|20-06-19	C2937T,C21310A
195	C22477T
England/ALDP-955F15/2020|20-06-08	C882T,C17746T,G19962T,G25793A,G28907T
England/ALDP-94EB75/2020|20-06-17	C3811T,G22225A
USA/TX-CDC-3009/2020|MT512440.1|20-03-10	T9708C,C10712T
England/BRIS-130015/2020|20-04-11	C6361T,C14786T,G20578T
204	G10631T
USA/MA_MGH_00136/2020|MT520439.1|20-03-25	
USA/MA_MGH_00486/2020|MT520279.1|20-03-27	G8131T
Wales/PHWC-2AF12/2020|20-04-06	C19884T,C26447A
207	C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T
321398|LR962930.1|20-10-13	C22208T
England/QEUH-B8053B/2020|20-11-14	G22225T
IHUCOVID-0428|LR794641.1|?	C6401T,T10480C,C13458T,C20946T
USA/WA-S3458/2020|MW494078.1|20-12-07	T2300C,C3535T,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G
210	T17838C,G26450T
hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?	
Switzerland/100363/2020|LR884411.1|20-03-20	
211	C18877T
212	C26735T
England/SHEF-10B22B9/2020|20-04-20	T241C,G3482A,A8821G,C15752T,G24197T,T26066C
IND/GBRC-366a/2020|MT951170.1|20-06-18	C26058T,G28851T
220	C22444T
SAU/596/2020|MT755893.1|20-02-18	A23503G
221	C593T,T3118C,T10200C,A12547G,C21772T,C28854T
Scotland/QEUH-A9E7BD/2020|20-10-20	A3120C
Scotland/EDB7778/2020|20-09-16	C28045T
223	C22444T,C28854T
224	T1947C
England/CAMC-A65DDB/2020|20-10-11	G2659T,G5008T,G19549T,C25349A,G25947C,G26062T
England/QEUH-9F3FDD/2020|20-09-24	T7292C,T8410C,C10833T,C11572T,C16293T,T23986C
England/QEUH-96A85E/2020|20-08-14	C7528T,T23986C,C29555T
228	G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T
HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06	C14724T
HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06	A6391G
England/PHEC-149F0D/2020|20-11-19	C1122T,T4057C,G6077T,A10323G,G13858T,G21724T,C27092T,C27434T,G28975T
England/MILK-970CE0/2020|20-08-18	C6312T,C12513T,G14122T,A20559G,C23127T,G26389T,T26876C,C28311T,A28900C
England/SHEF-10CC3AA/2020|20-12-17	A749G,C1420T,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C
England/MILK-566C5A/2020|20-06-12	C11514T,C13168T,G24764T
237	C2898T,C6681T,C7728T,G12191T,T16993C,G25311T
England/CAMC-C2CDFC/2020|20-12-07	T3366C
England/MILK-CAA0EE/2020|20-12-18	C28411T
240	C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A
England/MILK-97356A/2020|20-08-14	C15720T
England/MILK-A230C1/2020|20-10-03	A2175G
243	C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T
England/TFCI-26FA9B7/2020|20-12-31	
England/MILK-B94ACC/2020|20-11-13	C15237T
England/QEUH-96A29C/2020|20-08-13	C15654T,C16915T,G21204T,T24202C,G28899T,G29692T
USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07	C27416T,G28086T
USA/UT-03892/2020|MT711875.1|20-04-13	C683T,A6512C
USA/CA-CZB-1414/2020|MT628125.1|20-03-16	G10793T,C29311T
USA/WA-S1281/2020|MT821642.1|20-05-12	A2161G,G11417T,C16376T
USA/WI-UW-288/2020|MT706396.1|20-04-08	C9195T,T15354C,C21855T
USA/FL-BPHL-1097/2020|MT956684.1|20-08-19	C1288T,G1298A,G25445T,G28851T,G29254T
England/ALDP-5D3DEC/2020|20-06-19	A1154G,G29474T
USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05	A1096G,C1420T,G14874T
Scotland/EDB5108/2020|20-03-31	C2113T,C7765T,C17690T,T24923C
265	A25524G,C26801T,G29449T
USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18	
USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16	C10741T
USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19	C9967T,A11246T,A23949G,C29013T
269	C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T
England/QEUH-9C7EA8/2020|20-09-11	G2407T,T2924C,G11761T
England/MILK-9A8AB8/2020|20-08-31	C222T
Scotland/GCVR-172150/2020|20-03-30	C1545T,C22879A
England/BRIS-122C4F/2020|20-04-02	A11782G,G22203T,G27754T
275	A20268G
USA/RI-CDC-0556/2020|MT304488.1|20-03-01	C27684T
Switzerland/100198/2020|LR884312.1|20-03-17	G28881A
277	C28854T
Scotland/EDB3341/2020|20-04-08	G27987T
USA/CA-CZB-11521/2020|MW276549.1|20-07-18	C4633T,T14643C,C22482T,G27506T
284	G7798T
England/LOND-D5444/2020|20-04-15	C12789T
Scotland/CVR3238/2020|20-04-26	G22992T
286	C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T
USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22	C16362T
USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21	G25775T
Scotland/EDB3662/2020|20-04-28	T5507A,A19855G
USA/CA-CDC-4704/2020|MW001903.1|20-06-04	C4596A,G19086T,C23114T
England/OXON-B1781/2020|20-05-04	C1714T,C27213T
USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19	G208T,G23522A,A25747C
297	A8884G,C16694A,C26177T
USA/TX-DSHS-0945/2020|MW190134.1|20-07-03	C24258T
USA/TX-DSHS-1150/2020|MW252120.1|20-07-03	
USA/WI-UW-1288/2020|MW035458.1|20-09-02	C884T,G2258A,A6441G,C8140T,A9204G,C29445T
303	C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T
England/CAMC-94C02D/2020|20-07-15	C27371T
England/MILK-95DBDD/2020|20-06-20	A20667G
England/CAMB-79ECC/2020|20-04-01	A10323G,G21778A
England/QEUH-963433/2020|20-08-10	C2706T,C5339T,C25731T,C28833T
322	T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C
England/ALDP-A2FCA3/2020|20-10-05	T7919G,C20451T,G21770A,C24734T
330	C16394T,C22127T,G23876A,G25947T,C29274T
England/MILK-A474DA/2020|20-10-06	A6659G,G25218T
England/QEUH-AA0035/2020|20-10-20	T8110C,G11417T
341	C15324T
USA/WI-UW-37/2020|MT706158.1|20-03-22	G11417T
IND/GBRC174b/2020|MT607610.1|20-06-05	C3634T,C22444T,C28854T
France/10036BG/2020|MT470106.1|20-03	G28202A
POL/PL_MCB_97/2020|MW273879.1|20-05-10	C2570T,A7031G,G13617T
348	G19542T,G20679A,T27576G
Scotland/CVR3629/2020|20-05-24	G18380T
Scotland/QEUH-5456F9/2020|20-05-13	C6606T
England/QEUH-990752/2020|20-08-29	C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T
350	C15277T
AUS/VIC38/2020|MT450953.1|20-03-11	C10350T
IHUCOVID-0133|LR794459.1|?	C8394T
Switzerland/240009/2020|LR880588.1|20-08-07	G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A
354	A26530G
355	G11596T
USA/MN67-MDH67/2020|MT911566.1|20-03-14	
Netherlands/NA_292/2020|LR878032.1|20-04-01	G20568A
356	C8293T,T18488C,T24739C
Switzerland/101166/2020|LR824397.1|20-03-31	C22323T
Switzerland/100154/2020|LR824311.1|20-03-16	C17118T
PER/covper091/2020|MW030227.1|20-03-17	C15277T,A21917G
England/CAMB-737D6/2020|20-03-31	A2775G,G4255T,C6861T,C13568T,A20355G
Scotland/GCVR-173C30/2020|20-04-07	G3831A,T7441C
361	T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T
362	C3426T,C19862T
363	C11050A
England/MILK-BB0022/2020|20-11-18	
England/MILK-BB0031/2020|20-11-18	
England/PHEC-152C73/2020|20-11-16	C21682T
Scotland/QEUH-9D11C0/2020|20-09-16	T4195A,C10977T,C24334T,G25049T,G25062T,C26151T,C28657T,C29366T
366	C27944T
367	G204T
England/ALDP-9BE8B5/2020|20-09-09	T16242A,G28745A
369	C21614T
Scotland/CVR4309/2020|20-09-14	C7471T
373	C15480T
England/QEUH-A76C07/2020|20-10-12	G21777A
England/MILK-AC7997/2020|20-10-21	C125T
Scotland/QEUH-9B75D3/2020|20-09-04	G8179T,G29778T
376	A1987G
England/ALDP-9BECB9/2020|20-09-10	T14721C,C23029T,T25519G
England/MILK-9A9D09/2020|20-09-01	A1230G,G6344T
England/CAMC-AEA62E/2020|20-10-25	C66T,G10870T,A11781G,C18329T,C25614T
380	A1866G,A6889C,C12923T,C18029T,C19269T,A27137G
England/PHEC-14E15D/2020|20-12-09	C20178T
England/PHEC-149635/2020|20-10-28	
Switzerland/270068/2020|LR882987.1|20-09-02	C13671T,C14805T,G17058T,G17278T,A20284T,T20285C,A27755T
England/ALDP-9E75E9/2020|20-09-25	A408G,G2764T,C22088T,C29686T
386	G23311C
England/ALDP-A68CF9/2020|20-10-12	G6476T,C10626T
England/MILK-9F1898/2020|20-09-25	C5239T,G25440T,C27752T
Wales/PHWC-4815AA/2020|20-10-13	C12049T,G21800T,A22053C,G22346T
England/ALDP-4A2A77/2020|20-05-22	C7834T,C16997T,G25429T
England/BRIS-12468B/2020|20-04-09	C1909T,T27576C
England/NORW-E9DF7/2020|20-05-02	C2940T,C7765T
398	C6990T
Wales/PHWC-27B20/2020|20-03-30	T22435C
Wales/PHWC-2624A/2020|20-03-27	C27476T
Wales/PHWC-16930B/2020|20-04-01	C3264T,C29200T
Wales/PHWC-29E43/2020|20-04-04	G9220A,T26512C
England/LOND-D3534/2020|20-03-27	C25350T,T27280C
England/LIVE-A63E5/2020|20-03-18	G680T,T17835C
Wales/PHWC-27461/2020|20-03-31	C5506T,G14241T,C19374T
AUS/VIC1056/2020|MT451723.1|20-04-03	T7438C,A21944T,C29353T
409	A187G
USA/TX-DSHS-1397/2020|MW309099.1|20-05-20	A10770G,C16017T,T27212C,G27561T
England/BRIS-128DCE/2020|20-04-14	C12213T,C19066A
England/LIVE-A65EF/2020|20-03-19	G10523C,G14580T
IND/GBRC209a/2020|MT664202.1|20-06-11	A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,G25563T,C29750T
Scotland/CVR30/2020|20-03-13	C1884T,T26497C
IND/GBRC99/2020|MT509504.1|20-05-06	G4866T,C14425A,A21511G
AUS/VIC1239/2020|MT451821.1|20-04-02	C6723T,T26094C,G28476T
IND/GBRC128/2020|MT539172.1|20-05-02	C4084T,G5572T
POL/PL_MCB_75/2020|MW273857.1|20-04-16	A544G,C17104T
Netherlands/NA_302/2020|LR878041.1|20-04-01	A3058G,G20275A
USA/TX-DSHS-0975/2020|MW217385.1|20-06-16	G2282A,T9742C,C17639T,G20160T
423	C23422T,T23849C,C29686T
Scotland/CVR129/2020|20-03-13	G29227A
Scotland/CVR52/2020|20-03-14	C25667T
426	G28882A,G28883C
Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20	T241C
427	G28881A
428	C28887T
GRC/202_32984/2020|MT459870.1|20-03-12	
GRC/208_33922/2020|MT459876.1|20-03-14	
429	T19839C
England/QEUH-7A4BBB/2020|20-07-14	C2511T,G3242A,G8120C,C21646T,A24205T,G28083T
USA/WA-S1922/2020|MT831459.1|20-06-03	G242T,C12528A,C18086T
432	G25552T
Wales/PHWC-260AA/2020|20-03-24	T7168C,G11801A
434	A26332G,A28877T,G28878C
England/BRIS-185470D/2020|20-05-01	
England/BRIS-12AF02/2020|20-05-01	G27670T
USA/WA-S1775/2020|MT834200.1|20-06-01	G13513A,C28256T,C29784T
England/ALDP-B82A0D/2020|20-11-14	C4456T,C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T
443	C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T
USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08	C22264T
USA/MA-MGH-03951/2021|MW617773.1|21-01-22	T27824C
446	C6573T,C25528T
England/BRIS-12A70A/2020|20-05-01	C21077T
England/CAMB-77F61/2020|20-04-01	G22299A
England/PHEC-1B7C1/2020|20-04-08	C18115T
Scotland/CVR3919/2020|20-06-21	A22330G,T27264G
England/ALDP-9558ED/2020|20-06-12	C1800A,G2398A,C23854T,G25972A,G27842T
England/BRIS-12F78D/2020|20-03-10	T11638C,C25584A
452	C17678T
England/NORT-282972/2020|20-03-27	
England/CAMB-80554/2020|20-04-09	T3745C
456	T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T
England/CAMC-94328A/2020|20-07-25	
England/CAMC-9424A3/2020|20-07-21	
USA/MA-QDX-3180/2021|MW505247.1|21-01-05	T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T
USA/CA-CZB-1885/2020|MT750387.1|20-04-17	T4711C,A6709G,C17125T
USA/FL-BPHL-1469/2020|MW040679.1|20-05-09	C673T
USA/CA-CZB-13945/2020|MW565647.1|20-06-22	G443A,T6579C,G28378T
England/OXON-AEBC7/2020|20-04-12	C9430T,G24781T,G29706T
Wales/PHWC-164485/2020|20-05-02	C9438T,A16653G,G29777T
England/ALDP-51F142/2020|20-06-02	G922T,C6541T,C19983T
England/ALDP-49E391/2020|20-05-20	C3170T,C6336T,T26260G,C27673T
Northern_Ireland/NIRE-10677D/2020|20-05-14	C10376T,G18148A,C26208T
475	A27932G,G29705T
England/MILK-9705F4/2020|20-08-18	C15045T
England/ALDP-9B6440/2020|20-08-28	
476	G25088T
USA/MD-MDH-0841/2021|MW621433.1|21-01-17	T733C,C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,T26149C,G28167A,C28512G,A28877T,G28878C
Scotland/EDB6515/2020|20-06-15	
England/NORW-EE34B/2020|20-03-24	G18315A,C24904T,T25088G
England/ALDP-6839B9/2020|20-07-02	A2576T,C5175T,C6401T,A27691T
USA/FL-BPHL-1607/2020|MW166073.1|20-07-28	C18652T,T22843C
England/NOTT-111117/2020|20-05-03	A2526C,C10440T,T25316C
England/ALDP-68EFBC/2020|20-07-02	T13827C,G18756T,C23430T
495	G3230A,T24076A
England/PHEC-16F19/2020|20-03-31	C4570A
England/GSTT-265D4DF/2020|20-03-19	
498	C1420T,C19366T
Northern_Ireland/NIRE-FBB52/2020|20-04-13	C26270T
Northern_Ireland/NIRE-FAC7E/2020|20-04-15	C6114T
499	G10097A,C23731T
England/NORT-283BE4/2020|20-04-03	C24026T
500	C4002T,C13536T
England/CAMB-81070/2020|20-04-20	C4698T
501	T28110C
England/CAMB-72B44/2020|20-03-22	
England/CAMB-822D3/2020|20-04-12	
Switzerland/300433/2020|LR898634.1|20-09-29	G2995T,T4871C,C6449T,C10252T,C19366T,G27382T,T27808C
SRB/NS19622-16-06/2020|MW327528.1|20-06-15	G24794T
DK/KL14_Farm1/2020|MT919536.1|20-06-17	C15656T,C25936T
511	A1630C,C27679T
England/BRIS-123EDF/2020|20-04-08	C2509T
England/BRIS-123F09/2020|20-04-08	C9118T
513	C3373A
514	C2706T,G9968T,G16647T,T23480G
EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02	
EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02	
Scotland/CVR41/2020|20-03-13	C823T
521	C313T
USA/WA-UW-6243/2020|MT412316.1|20-04-02	C3096T
Japan/TKYE627000_2020/2020|LC593811.1|20-08	T4346C,C7728T,C9286T,C10376T,C14708T,C28725T,G29692T
England/QEUH-96E605/2020|20-08-17	C2841T,G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G
USA/ME-HETL-J0061/2020|MT886346.1|20-03-20	A11348G,G28690T
IND/GBRC455a/2020|MW600436.1|20-12-24	G160T,T682C,C900T,G3259T,C4048T,C5700A,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T
USA/FL-BPHL-0303/2020|MT757111.1|20-05-30	C823T,A11023G
Japan/TKYE622411_2020/2020|LC593808.1|20-07	C8917T,C18167T,G21518T,G28975T,G29773T
England/MILK-A18C8F/2020|20-10-03	G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T
Wales/PHWC-30957/2020|20-04-08	T11654C,G22627A,G28628T
LC573289.2|20-06	G2305T,G25563C,G28178T
TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15	C2509T,G5015A,C14724T,G24262T,G27703T
542	T29148C
543	G25793T,T27299C
544	T25793G
BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08	C28969T
USA/MA_MGH_00693/2020|MT520290.1|20-04-06	C25916T,T28360C,C29769T
CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13	A2475G,C14805T
England/CAMB-74D5B/2020|20-03-19	
England/LOND-D53CF/2020|20-04-15	G621A
551	G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T
USA/WA-S2724/2020|MT947562.1|20-07-04	
USA/WA-S2728/2020|MT947566.1|20-07-08	
Scotland/CVR3185/2020|20-04-28	C16946T,G26615T
England/BRIS-127A40/2020|20-04-17	G2659T,C17249T,G17722T
England/EXET-136ED9/2020|20-04-22	G2164A,C8733T
564	G569A,C5482T,G17944T,C18747T,A22182G
England/ALDP-907D09/2020|20-06-22	C20320T
England/MILK-85E3E4/2020|20-07-18	G2144T
England/MILK-95862C/2020|20-06-11	A2641G,C3622T,C25844T,C28087T,G28557T
566	G21624T
England/PHEC-219E0/2020|20-05-01	T23227C
England/LEED-2AA59E/2020|20-04-06	C28969T
England/BRIS-125D67/2020|20-03-29	C6347T,G18859T
569	G1874T,C8683T,C28093T
England/ALDP-94D8F7/2020|20-06-20	A9997C
England/NOTT-111BFB/2020|20-05-29	G26426A
570	A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C
England/ALDP-95A754/2020|20-06-13	T20764C
England/ALDP-95CEA8/2020|20-06-15	C14931T
572	G26918T,T29464C
England/MILK-8664D7/2020|20-07-17	C29733T
England/CAMC-947392/2020|20-07-18	C7843T,G15438T,C25207T,T25949C,C28453T
Wales/PHWC-162E7A/2020|20-05-19	C5497T,C6582T
England/ALDP-71D072/2020|20-07-01	C21637T,T26156C,A28169G
583	G25617T
England/ALDP-954C6A/2020|20-06-13	G27857T
England/CAMC-A40F67/2020|20-10-06	G1590T,A11120G,A12529G
586	C835T
England/QEUH-9B6EAC/2020|20-09-09	A29700G
England/NORT-2A4CAE/2020|20-09-17	C27945T
Northern_Ireland/NIRE-FB369/2020|20-08-31	A6900G,G25456T
589	G21724T
England/LEED-2AA394/2020|20-03-31	G11230T,C20941T,G23587C
592	G17302T,C25046T
England/WSFT-25C13CB/2020|20-04-17	
England/PORT-2F5D9C/2020|20-06-05	A5277G
England/PHEC-20B81/2020|20-04-16	C20474T
England/MILK-9570D4/2020|20-06-10	T3163C,C7768T
DV_IZSPB_236_S50|LR992121.1|20-08-29	C3737T,A3959G,C11758T,G12769T,G25785T,G29402T
England/ALDP-9D8FFC/2020|20-09-18	G1210T,G9802T,G12067T,T20613C
598	C3177T,G22093A
England/NORT-28B1EA/2020|20-04-18	C27741T
England/NORT-28B28D/2020|20-04-18	A8734G
599	G10265A
England/ALDP-5D52BE/2020|20-06-18	T13794G,T28494C
England/ALDP-4A2BFC/2020|20-05-22	A20826G,A23207G
England/ALDP-49F5B8/2020|20-05-22	A19650G,T21368C
England/LIVE-9BC33/2020|20-04-21	C11620T
England/ALDP-5A2A49/2020|20-06-14	T3154C,C18981T
609	G16813A
USA/WA-S1434/2020|MT821707.1|20-05-21	C8802T
USA/WA-S2598/2020|MT831859.1|20-06-18	C6445T,G16852T,G29254T
USA/WA-S820/2020|MT641503.1|20-04-15	A5538T,G17261A,T25783C
USA/WA-S2573/2020|MT831840.1|20-06-17	G18803T,A22606G
England/ALDP-9BEB16/2020|20-09-09	C313T,C2445T,C9430T,G14428T,T15156C,C20368T,C26527T,C29149T,G29239A
616	C19170T,G19509A
Scotland/CVR1557/2020|20-04-03	G23401T
Wales/PHWC-34610/2020|20-04-21	G16014A
617	C26313T
Netherlands/NA_436/2020|LR883367.1|20-04-07	G29628T
Netherlands/Friesland_33/2020|LR883315.1|20-04-14	C4824T
618	C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
619	G174T,G210T,C2453T
England/CAMC-B36516/2020|20-11-05	C2918T
England/CAMC-B362D3/2020|20-11-05	C29311T
620	T8603C,A17615G,G25437T
England/MILK-B3A284/2020|20-11-01	C27046T
England/CAMC-B365AD/2020|20-11-05	T19232C
621	A1163T
BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07	C19273T
623	T7540C,G16647T,G22992A,G23401A
AUS/VIC13094/2020|MW185501.1|20-07-31	G6662A
AUS/VIC11646/2020|MW155572.1|20-07-22	G6617T,C18555T,C22987T
625	C19488T
England/CAMB-82E1B/2020|20-04-14	A8374T
England/CAMC-947259/2020|20-07-21	A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C
628	A11869G,T27484C
SAU/KFSHRC44/2020|MT820480.1|20-04-11	
SAU/KAIMRC67/2020|MT820487.1|20-04-01	G29422T
Scotland/EDB300/2020|20-03-29	C2399T,C15240T
England/CAMB-1AA438/2020|20-04-17	T4149C,C12525T,G25599T
England/MILK-9C4087/2020|20-09-09	T1543A,C1938T,T4369C,T22020C,C27911T
England/PHEC-13ADF/2020|20-03-13	T15978C,G24794T
USA/CA-CZB-2184/2020|MW035923.1|20-05-26	C21205T,G21255C,G28960T
Scotland/QEUH-94375E/2020|20-08-02	G5554T,G19891T,C22938A,C24034T,G25249T,G25785T,G26152T,C27532T,G28321T,C29614T
641	T3615C,G22256T,C23802T,A27403T,C27741T
England/CAMB-7C12A/2020|20-04-13	
England/CAMB-83348/2020|20-04-15	
644	G596T,T18231C
USA/MS-CDC-6546/2020|MW279423.1|20-08-25	G1589T
USA/TX-DSHS-1780/2020|MW425014.1|20-07-07	T3127C
648	G5950T,C19164T,A21137G,T27447C,T29661C
ZW-6983|LR963462.1|20-05-01	C10341T
ZW-6978|LR963455.1|20-05-01	A13833G
USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02	A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C,C28720T
Netherlands/NA_359/2020|LR883961.1|20-04-07	C7095T,C13502T,A16179G
England/CAMB-1AE7FF/2020|20-04-29	G4207T,A4208C,C6033T,G11842T
England/ALDP-BCA4B0/2020|20-11-23	G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T
USA/WA-S1222/2020|MT821613.1|20-05-08	C186T,C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T
660	A14940G
USA/CA-CZB-1091/2020|MT460091.1|20-05-01	C15024T
USA/CA-CZB-11876/2020|MW276506.1|20-04-08	A26120G
USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24	T514C,C22033A
USA/CA-QDX-1986/2020|MW190732.1|20-03-18	C11050T,A12557G,C24904T,A27359G
USA/CA-CZB-1015/2020|MT438733.1|20-04-22	T15867A,C25692T
USA/CA-CZB-1051/2020|MT449644.1|20-04-06	G7273A,C10277T
667	G29711T
England/LIVE-9D7D6/2020|20-04-15	C1218T,C27493T,G27806T
USA/WI-UW-314/2020|MT706422.1|20-04-16	A4838G,C7420T,C14937T,C20148T,G25907T
671	C28854T
Scotland/CVR780/2020|20-03-27	C5997T,C12710T
Japan/TKYE63557_2020/2020|LC581365.1|20-03	C11752T,C25665T,C26447T,A27700G,T28854C,T28912C
674	C6312A,C13730T,C23929T,C28311T
USA/CA-QDX-33/2020|MT614459.1|20-03-15	C66T
USA/DC-HP00063/2020|MT646075.1|20-03-13	C11455T
MYS/188407/2020|MT372480.1|20-03-18	C6310A,C19524T,T25473C
676	C8782T,T28144C
677	A23403G,C26088T
679	G9928T,G23403A
Scotland/EDB5629/2020|20-03-24	G27870T
Scotland/EDB5040/2020|20-04-02	C593T
680	C3037T,A20268G
Spain/R11/2020|LR884126.1|20-03-06	T3037C
Spain/LP19_4952/2020|LR884066.1|20-03-07	
682	T9477A,C14805T,G25979T
USA/FL-BPHL-0393/2020|MT757005.1|20-03-17	
683	C28863T
Spain/R10_33/2020|LR884127.1|20-03-02	T25979G
685	C4540T,C28657T
Scotland/CVR2435/2020|20-04-14	C15274T,C25714T,C26029A
AUS/VIC995/2020|MT451680.1|20-03-31	G17632A,C28311T
USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24	G16381A,T17877C,G25500T,C25854T,G28878A,G29742A
697	T490A,C3177T,C24034T,T26729C,G28077C
USA/COVID20-0008/2020|MT764174.1|20-03-10	T18736C
USA/IL-CDC-IL2/2020|MT044257.1|20-01-28	
699	G1397A,T28688C,G29742T
England/PHEC-1A601/2020|20-03-04	A19526G
AUS/VIC1878/2020|MT745600.1|20-03-29	C1076T,A28955T