view test-data/test_19_path_clades.tabular @ 3:746b434c8fbb draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit 5de7b91f2bda9c351f9512601f899248b7278924
author iuc
date Sun, 17 Mar 2024 18:10:07 +0000
parents 524cb8f7a69a
children
line wrap: on
line source

clade	root_id	from_tree_root
19A	1	
B	1	
B.26	4	 > C7423T
B.48	5	 > C20270T
B.15	8	 > T4949C
B.5	9	 > C29635T
B.54	10	 > C14805T,G26144T
B.47	England/LIVE-A5D06/2020|20-03-17	 > C6681T,A10982G,G11801A
20A	28	 > C241T,C3037T,C14408T,A23403G
B.1.108	28	 > C241T,C3037T,C14408T,A23403G
B.20	660	 > A14940G
B.11	USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24	 > T514C,C22033A
B.1.14	664	 > C25692T
B.27	England/SHEF-BFEBB/2020|20-03-24	 > C11747T,T24364G,G29032A
B.19	USA/CA-CZB-1051/2020|MT449644.1|20-04-06	 > G7273A,C10277T
B.45	Scotland/CVR780/2020|20-03-27	 > C5997T,C12710T,C28854T
19B	676	 > C8782T,T28144C
A	676	 > C8782T,T28144C
B.10	698	 > C6696T
B.23	England/SHEF-BFF21/2020|20-03-25	 > C20270T > A18671G,A29683T
B.33	11	 > C14805T,G26144T > T17247C
B.28	Scotland/EDB199/2020|20-03-26	 > C14805T,G26144T > C22713T,G26031T,G28842T
B.29	England/ALDP-9EE3AC/2020|20-05-06	 > C14805T,G26144T > G20991T,C23707T
B.40	20	 > C14805T,G26144T > A2480G,C2558T
B.30	21	 > C14805T,G26144T > A4236G,T25655C
B.41	22	 > C14805T,G26144T > G5572T
B.1.105	England/CAMB-75BD8/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > C18060T,G28514T
B.1.152	England/ALDP-944BD9/2020|20-06-07	 > C241T,C3037T,C14408T,A23403G > G1914A,G4399T,T16456C,G27746T
B.1.103	47	 > C241T,C3037T,C14408T,A23403G > C25665T,G28325T
B.1.378	49	 > C241T,C3037T,C14408T,A23403G > G3871T
B.1.199	USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30	 > C241T,C3037T,C14408T,A23403G > C2939T,T11698C,C18322T
B.1.139	51	 > C241T,C3037T,C14408T,A23403G > A696C
B.1.91	England/EXET-1358BE/2020|20-04-15	 > C241T,C3037T,C14408T,A23403G > A20092G,G24077T,T28630G
B.1.350	53	 > C241T,C3037T,C14408T,A23403G > G25563T
B.1.222	Scotland/GCVR-172150/2020|20-03-30	 > C241T,C3037T,C14408T,A23403G > C1545T,C22879A
B.1.379	274	 > C241T,C3037T,C14408T,A23403G > A11782G,G22203T
B.1.182	275	 > C241T,C3037T,C14408T,A23403G > A20268G
B.1.5	341	 > C241T,C3037T,C14408T,A23403G > C15324T
B.1.215	Scotland/GCVR-173C30/2020|20-04-07	 > C241T,C3037T,C14408T,A23403G > G3831A,T7441C
B.1.81	England/BRIS-12468B/2020|20-04-09	 > C241T,C3037T,C14408T,A23403G > C1909T,T27576C
B.1.201	England/NORW-E9DF7/2020|20-05-02	 > C241T,C3037T,C14408T,A23403G > C2940T,C7765T
B.1.395	398	 > C241T,C3037T,C14408T,A23403G > C6990T
B.1.67	Wales/PHWC-29E43/2020|20-04-04	 > C241T,C3037T,C14408T,A23403G > G9220A,T26512C
B.1.98	England/LOND-D3534/2020|20-03-27	 > C241T,C3037T,C14408T,A23403G > C25350T,T27280C
B.1.76	England/LIVE-A63E5/2020|20-03-18	 > C241T,C3037T,C14408T,A23403G > G680T,T17835C
B.1.383	Wales/PHWC-260C8/2020|20-03-26	 > C241T,C3037T,C14408T,A23403G > C12242T,C22264T,A25575C
B.1.142	Wales/PHWC-16C6F0/2020|20-06-09	 > C241T,C3037T,C14408T,A23403G > T8944C,C14741T,G25552T
B.1.376	407	 > C241T,C3037T,C14408T,A23403G > C5506T,G14241T
B.1.23	408	 > C241T,C3037T,C14408T,A23403G > T7438C,C29353T
B.1.198	England/BRIS-128DCE/2020|20-04-14	 > C241T,C3037T,C14408T,A23403G > A187G,C12213T,C19066A
B.1.153	412	 > C241T,C3037T,C14408T,A23403G > G14580T
B.1.70	414	 > C241T,C3037T,C14408T,A23403G > C1884T,T26497C
B.1.145	IND/GBRC99/2020|MT509504.1|20-05-06	 > C241T,C3037T,C14408T,A23403G > G4866T,C14425A,A21511G
B.1.197	AUS/VIC1239/2020|MT451821.1|20-04-02	 > C241T,C3037T,C14408T,A23403G > C6723T,T26094C,G28476T
B.1.143	417	 > C241T,C3037T,C14408T,A23403G > C4084T
B.1.187	POL/PL_MCB_75/2020|MW273857.1|20-04-16	 > C241T,C3037T,C14408T,A23403G > A544G,C17104T
B.1.414	419	 > C241T,C3037T,C14408T,A23403G > G20275A
B.1.93	England/NORT-289814/2020|20-04-01	 > C241T,C3037T,C14408T,A23403G > C9165T,C13862T,T21033C,C28836T
B.1.78	Northern_Ireland/NIRE-1022CB/2020|20-03-25	 > C241T,C3037T,C14408T,A23403G > C1997T,C28708T,G29422T
20B	426	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C
B.18	England/LIVE-9D7D6/2020|20-04-15	 > G29711T > C1218T,C27493T,G27806T
B.51	USA/WI-UW-325/2020|MT706432.1|20-04-24	 > G29711T > T2116A,C12880T,C28854T
A.1	USA/MN-MDH-1475/2020|MT920008.1|20-03-23	 > C8782T,T28144C > A7966G,A17858G,C18060T,A22422G
B.37	13	 > C14805T,G26144T > T17247C > C8078T
B.35	England/BRIS-130965/2020|20-04-13	 > C14805T,G26144T > T17247C > A7479G,C10741T,C25572T,C27498T
B.32	15	 > C14805T,G26144T > T17247C > A1587G
B.34	Scotland/CVR207/2020|20-03-18	 > C14805T,G26144T > T17247C > C988T,G12832A
B.39	17	 > C14805T,G26144T > T17247C > A1515G,C9223T
B.1.391	England/CAMB-76515/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G25429T > C16289T,T25429G
B.1.104	England/LEED-2A8D10/2020|20-03-31	 > C241T,C3037T,C14408T,A23403G > G25429T > C13730T,C25916T
B.1.88	34	 > C241T,C3037T,C14408T,A23403G > G25429T > C25916T
B.1.248	Scotland/CVR1519/2020|20-04-03	 > C241T,C3037T,C14408T,A23403G > G25429T > A6441G,A28841G
B.1.251	England/MILK-9589F6/2020|20-06-15	 > C241T,C3037T,C14408T,A23403G > G25429T > G1141T,C7488T,C14396T
B.1.250	England/BRIS-128441/2020|20-04-16	 > C241T,C3037T,C14408T,A23403G > G25429T > G10324T,C22713T,C28045T
B.1.392	England/NORW-E8C37/2020|20-04-13	 > C241T,C3037T,C14408T,A23403G > G25429T > C3602T,C11460T,A24232G
B.1.252	43	 > C241T,C3037T,C14408T,A23403G > G25429T > G1589A,G29474T
B.1.249	England/PHEC-127E8/2020|20-03-28	 > C241T,C3037T,C14408T,A23403G > G25429T > G21538T
B.1.110	54	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T
20C	61	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T
B.1.371	61	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T
B.1.440	211	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T
B.1.223	Scotland/CVR3054/2020|20-04-24	 > C241T,C3037T,C14408T,A23403G > A20268G > T6673C,G15438T,C28887T
B.1.419	England/CAMB-79ECC/2020|20-04-01	 > C241T,C3037T,C14408T,A23403G > A20268G > A10323G,G21778A
B.1.181	USA/AK-PHL414/2020|MT946886.1|20-06-03	 > C241T,C3037T,C14408T,A23403G > A20268G > C2143T,G26062T,C29119T,C29370G
B.1.416.1	310	 > C241T,C3037T,C14408T,A23403G > A20268G > C2706T,C25731T,C28833T
B.1.225	England/NORW-E755B/2020|20-05-04	 > C241T,C3037T,C14408T,A23403G > A20268G > A4198C,C7011T,C12915T,G21255T
B.1.157	England/PHEC-20A84/2020|20-04-20	 > C241T,C3037T,C14408T,A23403G > A20268G > T17126C,C28201T,C28546A
B.1.418	Scotland/EDB4579/2020|20-05-06	 > C241T,C3037T,C14408T,A23403G > A20268G > C6472T,C7815T,G13397A,C21682T
B.1.190	340	 > C241T,C3037T,C14408T,A23403G > A20268G > G12550A,C20740A,G29734C
B.1.151	USA/CA-QDX-2630/2020|MW191335.1|20-03-15	 > C241T,C3037T,C14408T,A23403G > C15324T > C18904T,C21646T,C22208T,G25606T
B.1.220	France/10065EE/2020|MT470176.1|20-03	 > C241T,C3037T,C14408T,A23403G > C15324T > T10561C,C26895T,C29013T
B.1.210	IND/GBRC174b/2020|MT607610.1|20-06-05	 > C241T,C3037T,C14408T,A23403G > C15324T > C3634T,C22444T,C28854T
B.1.178	345	 > C241T,C3037T,C14408T,A23403G > C15324T > G28202A
B.1.147	Switzerland/100210/2020|LR884314.1|20-03-18	 > C241T,C3037T,C14408T,A23403G > C15324T > C1191A,G15260A,C25433T
B.1.213	POL/PL_MCB_97/2020|MW273879.1|20-05-10	 > C241T,C3037T,C14408T,A23403G > C15324T > C2570T,A7031G,G13617T
B.1.6	350	 > C241T,C3037T,C14408T,A23403G > C15324T > C15277T
B.1.96	355	 > C241T,C3037T,C14408T,A23403G > A26530G > G11596T
B.1.205	PER/covper091/2020|MW030227.1|20-03-17	 > C241T,C3037T,C14408T,A23403G > A26530G > C15277T,A21917G
B.1.35	399	 > C241T,C3037T,C14408T,A23403G > C6990T > C29200T
B.1.1.119	427	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A
A.5	678	 > C8782T,T28144C > A23403G,C26088T > G23403A
A.10	680	 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G
B.1.254	35	 > C241T,C3037T,C14408T,A23403G > G25429T > C25916T > A10874G,T26677C
B.1.110.2	England/LEED-2A87C7/2020|20-04-03	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G3230A,C23453T
B.1.485	66	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T20037C
B.1.349	68	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18555T,C28892T
B.1.453	USA/CA-CZB-11132/2020|MW276510.1|20-05-23	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2668T,T18240C,T28009C
B.1.489	Wales/PHWC-2E0A2/2020|20-04-10	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18568T,G24368T,C24621T
B.1.431	81	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C4999T,C13730T
B.1.314	USA/CA-QDX-434/2020|MW064457.1|20-03-20	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A2018G,C8697T
B.1.320	USA/CA-CZB-1793/2020|MT750334.1|20-04-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C379A,A20503G
B.1.521	108	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T
B.1.294	USA/WI-UW-1119/2020|MT929068.1|20-07-27	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A19899T,A21464G
B.1.306	USA/FL-BPHL-1651/2020|MW166116.1|20-07-03	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G23311T,G24977C,C25777T,C29614T
B.1.39	123	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8788C,G26951A
B.1.324	USA/TX-DSHS-1232/2020|MW309089.1|20-03-25	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7528T,G8213A
B.1.341	USA/WA-QDX-235/2020|MT806806.1|20-04-27	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12557C,A23534T
B.1.332	127	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1917T
B.1.325	USA/UT-QDX-2224/2020|MW191025.1|20-03-13	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C23191T,A25910C
B.1.293	USA/FL-QDX-1620/2020|MW190373.1|20-03-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5548T,G15906T,C28153T
B.1.40	131	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1076T,C10582T
B.1.323	142	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T9070C
B.1.356	England/LIVE-A91F7/2020|20-03-25	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T13006C,C19186T,C25688T
B.1.268	146	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G3892T
B.1.287	USA/NMDOH-2020126568/2020|MW006567.1|20-06-15	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C16428T,C20555T,C21772T
B.1.38	150	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G25523T,T27869C
B.1.413	153	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C26625T
B.1.360	154	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27847T
B.1.366	155	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8041C,G22225T
B.1.363	USA/TX-DSHS-0675/2020|MW093567.1|20-07-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C335T,G526C,T16425G
B.1.117	158	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G29705T
B.1.264	161	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11919T
B.1.313	163	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5183T
B.1.331	164	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25976A
B.1.165	165	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7851T,C20233T
B.1.338	166	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25572T
B.1.321	England/BRIS-129D72/2020|20-04-15	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1593T,C10440T,G29291A
B.1.283	USA/MN-MDH-1616/2020|MT997734.1|20-04-24	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2878T,G3146A,A27821G
B.1.166	172	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1887T
B.1.120	Wales/PHWC-26B12/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C829T,G28371T
B.1.319	174	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10851T
B.1.267	USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A8252G,G15193A,C25626G
B.1.487	177	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1734T,C23664T
B.1.513	Northern_Ireland/NIRE-1021DD/2020|20-03-14	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A6360G,G20709T
B.1.168	Scotland/EDB6052/2020|20-05-08	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18213T,A18818G
B.1.312	184	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9286T,G28899C
B.1.329	186	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C6406T,G18972A
B.1.315	USA/WI-UW-738/2020|MT772509.1|20-06-30	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T3049C,G4972A,A24129G
B.1.492	189	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T4888A,G28727T
B.1.115	ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G7295T,C28290T
B.1.276	USA/FL-BPHL-1462/2020|MW040672.1|20-04-20	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G26233T,C27881T
B.1.483	USA/WI-UW-249/2020|MT706376.1|20-03-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C8016T,T15366C,G28903T
B.1.37	200	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C10712T
B.1.13	202	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C14786T,G20578T
B.1.274	USA/UT-04888/2020|MW084559.1|20-05-26	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > A716G,G4960T,G21604T
B.1.479	204	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G10631T
B.1.277	Wales/PHWC-2AF12/2020|20-04-06	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C19884T,C26447A
B.1.481	210	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T17838C,G26450T
B.1.442	USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C27416T,G28086T
B.1.112	251	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A6512C
B.1.163	252	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > G10793T
B.1.124	USA/WA-S1281/2020|MT821642.1|20-05-12	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A2161G,G11417T,C16376T
B.1.111	USA/CA-QDX-1044/2020|MW065007.1|20-03-17	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C1403T,G7798T,C10507T
B.1.162	256	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9195T,T15354C
B.1.438	England/ALDP-5D3DEC/2020|20-06-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1154G,G29474T
B.1.245	259	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1096G,G14874T
B.1.232	Scotland/EDB3341/2020|20-04-08	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G27987T
B.1.243	USA/CA-CDC-4728/2020|MW001919.1|20-06-16	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7393T,T24076C,C27804T
B.1.397	USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G1135T,G1148T,G28109T
B.1.229	284	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7798T
B.1.235	Scotland/EDB3662/2020|20-04-28	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > T5507A,A19855G
B.1.403	USA/CA-CDC-4704/2020|MW001903.1|20-06-04	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4596A,G19086T,C23114T
B.1.238	England/QEUH-544733/2020|20-05-14	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C7564T,C8683T,C12400T
B.1.231	England/OXON-B1781/2020|20-05-04	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C1714T,C27213T
B.1.405	USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G208T,G23522A,A25747C
B.1.406	England/MILK-977645/2020|20-07-24	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C3695T,C18744T,G25049T
B.1.1.4	429	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C
B.1.1.8	446	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6573T,C25528T
B.1.1.131	England/PHEC-1B7C1/2020|20-04-08	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18115T
B.1.1.125	449	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T27264G
B.1.1.71	451	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T11638C
B.1.1.157	452	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C17678T
B.1.1.250	454	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1912T
B.1.1.189	England/CAMB-7767B/2020|20-03-31	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,C23802T,C28045T
B.1.1.172	459	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4711C,A6709G
B.1.1.304	USA/VA-DCLS-1212/2020|MW067767.1|20-06	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C936T,G3259T,A20860G,C28087T
B.1.1.192	USA/FL-BPHL-1469/2020|MW040679.1|20-05-09	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C673T
B.1.1.174	USA/CA-CZB-13945/2020|MW565647.1|20-06-22	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G443A,T6579C,G28378T
B.1.1.194	England/OXON-AEBC7/2020|20-04-12	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,G24781T,G29706T
B.1.1.38	468	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9438T,G29777T
B.1.1.160	473	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C10376T,C26208T
B.1.1.165	475	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A27932G,G29705T
B.1.1.28	476	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T
B.1.1.105	487	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C12809T
B.1.1.274	489	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25912T
B.1.1.180	490	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T22843C
B.1.1.95	England/ALDP-68EFBC/2020|20-07-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T13827C,G18756T,C23430T
B.1.1.275	495	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G3230A,T24076A
B.1.1.83	497	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T
B.1.1.1	499	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T
B.1.1.298	510	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C15656T,C25936T
B.1.1.270	511	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1630C,C27679T
B.1.1.292	Scotland/CVR41/2020|20-03-13	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C823T,C3373A
B.1.1.171	England/BRIS-12DC53/2020|20-05-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1437T,G4720A,A4928T,G29745T
B.1.1.114	521	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T
B.1.1.314	542	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C
B.1.1.43	Scotland/CVR3185/2020|20-04-28	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C16946T,G26615T
B.1.150	England/BRIS-127A40/2020|20-04-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2659T,C17249T,G17722T
B.1.1.187	Northern_Ireland/NIRE-FB9C1/2020|20-08-13	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10260G,A10880G,G16197T,C24382T
B.1.1.164	555	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2164A
B.1.1.137	England/SHEF-CBE43/2020|20-04-26	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11396T,C17676T,C18713T
B.1.1.133	559	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8072G
B.1.1.297	England/MILK-9E2BDD/2020|20-09-20	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A9337G,A20742C,A27086T
B.1.1.237	566	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T
B.1.1.235	England/MILK-8664D7/2020|20-07-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C,C29733T
B.1.173	578	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G20931A
B.1.1.134	579	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6582T
B.1.1.37	582	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21637T,A28169G
B.1.1.151	583	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T
B.1.1.59	588	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2638T
B.1.1.16	Wales/PHWC-16881C/2020|20-04-21	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C222T,C19602T,C21780T,G29779A
B.1.1.148	England/PHEC-20B81/2020|20-04-16	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C20474T
B.1.1.12	595	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3163C
B.1.1.168	598	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3177T,G22093A
B.1.1.239	606	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11620T
B.1.1.92	England/ALDP-5A2A49/2020|20-06-14	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3154C,C18981T
B.1.1.26	609	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A
B.1.1.89	612	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G27281T
B.1.1.116	USA/WA-S2573/2020|MT831840.1|20-06-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G18803T,A22606G
B.1.1.67	England/QEUH-96AEF2/2020|20-08-15	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G7037T,G11447A,C12488T,C21648T
B.1.1.10	616	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A
B.1.1.25	621	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T
B.1.1.217	England/CAMB-82E1B/2020|20-04-14	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8374T,C19488T
B.1.1.96	628	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A11869G,T27484C
B.1.1.20	Scotland/EDB300/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2399T,C15240T
B.1.1.56	England/PHEC-13ADF/2020|20-03-13	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T15978C,G24794T
B.1.1.193	635	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G27996T
B.1.1.132	USA/CA-CZB-2184/2020|MW035923.1|20-05-26	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21205T,G21255C,G28960T
B.1.1.169	644	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G596T,T18231C
B.1.1.263	England/ALDP-952A44/2020|20-06-21	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5924A,G16852T,G18984T,T21775G
B.1.1.185	651	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C7095T,A16179G
B.1.110.3	57	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > C601T,G27915A > G12832T
B.1.110.1	59	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G1319A > G2945A,C10156T
B.1.359	USA/NY-QDX-1993/2020|MW190794.1|20-03-18	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G28376T
B.1.493	89	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G26020T
B.1.494	USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C13252T
B.1.495	USA/WA-S1037/2020|MT642186.1|20-05-03	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > A18671C,C25466T,G28027T,G29742T
B.1.265	114	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C28833T
B.1.336	USA/CA-QDX-2685/2020|MW191430.1|20-03-17	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C9967T,G17590T
B.1.450	117	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G17808T
B.1.370	118	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C24378T
B.1.519	England/BRIS-127AD7/2020|20-04-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G29705T > G3638T,G28808T,G29434C
B.1.281	BHR/920262933_S19_L001/2020|MW228054.1|20-06-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C2937T,C21310A
B.1.477	197	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C3811T,G22225A,C22477T
B.1.454	IND/GBRC-366a/2020|MT951170.1|20-06-18	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C26058T,G28851T
B.1.468	220	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T
B.1.36	223	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T
B.1.1.158	431	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G242T,C18086T
B.1.1.289	433	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G11801A,G25552T
B.1.1.290	USA/WA-S1775/2020|MT834200.1|20-06-01	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G13513A,C28256T,C29784T
B.1.1.5	England/LOND-D6EBE/2020|20-04-03	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C8293T,A11839G,C16575T
B.1.1.222	USA/WA-S860/2020|MT642111.1|20-04-24	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C4886T,C16178T,A23756G
B.1.1.251	482	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G
B.1.1.81	498	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T > C19366T
20D	500	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T
C.6	500	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T
B.1.1.215	England/NORW-E8709/2020|20-04-18	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G1820A,C6541T,A9737G,A29242G
B.1.1.113	USA/ME-HETL-J0061/2020|MT886346.1|20-03-20	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > A11348G,G28690T
B.1.1.285	534	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C823T
B.1.1.213	England/CAMB-7CBD1/2020|20-04-05	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G960T,G26589C,C27128T
B.1.1.49	Wales/PHWC-30957/2020|20-04-08	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T11654C,G22627A,G28628T
B.1.1.283	LC573289.2|20-06	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G2305T,G25563C,G28178T
B.1.1.139	USA/CA-CZB-4049/2020|MW134382.1|20-08-21	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C5979T,T27645A,G27666A,G29648T
B.1.1.33	543	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C
B.1.1.204	England/MILK-ACCF27/2020|20-10-21	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A,C18131T,G26640T
B.1.1.279	England/BRIS-125D67/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > C6347T,G18859T
B.1.1.207	576	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T
B.1.1.41	Wales/PHWC-162751/2020|20-05-27	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10948G > C6312A,G18538T,A20136G
B.1.1.308	England/CAMC-A40F67/2020|20-10-06	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G,A12529G
B.1.1.309	586	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > C835T
B.1.1.310	587	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > A6900G
B.1.1.260	590	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C
B.1.1.199	591	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > T7792C
B.1.1.259	592	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T
B.1.1.300	600	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > T13794G
B.1.1.299	England/ALDP-4A2BFC/2020|20-05-22	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A20826G,A23207G
B.1.1.301	England/ALDP-49F5B8/2020|20-05-22	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A19650G,T21368C
B.1.1.233	USA/WA-S2598/2020|MT831859.1|20-06-18	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T,G29254T
B.1.1.65	USA/WA-S820/2020|MT641503.1|20-04-15	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > A5538T,G17261A,T25783C
L.2	617	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T
B.1.507	USA/VA-DCLS-1147/2020|MT992749.1|20-04	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G,G22487C
B.1.503	USA/CA-CZB-1275/2020|MT533209.1|20-04-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C23685T,G25947C,G27703T
B.1.499	USA/NY-QDX-2365/2020|MW191144.1|20-03-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T
B.1.508	USA/CA-CZB-2139/2020|MT750510.1|20-05-21	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C5540A,C19145T
B.1.502	USA/FL-BPHL-1988/2020|MW286761.1|20-04-18	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > G3638A,T13914C,C16217T
B.1.501	USA/NC-QDX-174/2020|MT786825.1|20-04-27	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,C18693A,G26828T
B.1.504	ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C21731T,G26217T,G29645T
B.1.36.17	227	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C,C7528T,C29555T
C.3	England/ALDP-49EC3C/2020|20-05-20	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T,G29392T,C29541T
C.14	503	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T
C.13	PER/covper040/2020|MW030271.1|20-05-05	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C12854T,G20752T,A21131G
C.4	SRB/NS19622-16-06/2020|MW327528.1|20-06-15	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T
N.1	USA/MA_MGH_00693/2020|MT520290.1|20-04-06	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,T28360C,C29769T
N.4	CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G,C14805T