Mercurial > repos > iuc > usher_matutils
diff test-data/test_15_subtree.json @ 0:79e2ee4e6ebb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"
| author | iuc |
|---|---|
| date | Tue, 11 May 2021 17:54:51 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_15_subtree.json Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,16487 @@ +{ +"version":"v2", +"meta":{ +"title":"mutation_annotated_tree", +"filters": ["country"], +"panels": ["tree"], +"colorings": [ {"key":"MAT_Clade_0","title":"MAT_Clade","type":"categorical"}, +{"key":"MAT_Clade_1","title":"MAT_Clade","type":"categorical"} ], +"display_defaults":{"branch_label":"nuc mutations"},"description":"JSON generated by matUtils. If you have metadata you wish to display, you can now drag on a CSV/TSV file and it will be added into this view, [see here](https://docs.nextstrain.org/projects/auspice/en/latest/advanced-functionality/drag-drop-csv-tsv.html) for more info."}, +"tree":{ "name":"wrapper", +"children":[ { +"name": "25", +"branch_attrs": { + "labels": { "nuc mutations": "C241T" }, +"mutations": { "nuc" : [ "C241T" ] } + }, +"node_attrs": { + "div":1, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "26", +"branch_attrs": { + "labels": { "nuc mutations": "C14408T" }, +"mutations": { "nuc" : [ "C14408T" ] } + }, +"node_attrs": { + "div":2, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1"}}, +"children":[ { +"name": "France/40002VJ/2020|MT470179.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "C2416T,G12079C,C23220A" }, +"mutations": { "nuc" : [ "C2416T","G12079C","C23220A" ] } + }, +"node_attrs": { "div": 5, "date": {"value": "20-03"}, "country": {"value": "France"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "27", +"branch_attrs": { + "labels": { "nuc mutations": "A23403G" }, +"mutations": { "nuc" : [ "A23403G" ] } + }, +"node_attrs": { + "div":3, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Wales/PHWC-310CA/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "A2480G,A12529G,T14408C,G26144T" }, +"mutations": { "nuc" : [ "A2480G","A12529G","T14408C","G26144T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-11"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "28", +"branch_attrs": { + "labels": { "nuc mutations": "C3037T" }, +"mutations": { "nuc" : [ "C3037T" ] } + }, +"node_attrs": { + "div":4, "MAT_Clade_0": {"value": "20A"}, "MAT_Clade_1": {"value": "B.1.108"}}, +"children":[ { +"name": "29", +"branch_attrs": { + "labels": { "nuc mutations": "G7042T,G8861T" }, +"mutations": { "nuc" : [ "G7042T","G8861T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/BRIS-123965/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C5806T,C10450T" }, +"mutations": { "nuc" : [ "C5806T","C10450T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-125347/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "30", +"branch_attrs": { + "labels": { "nuc mutations": "C4809T" }, +"mutations": { "nuc" : [ "C4809T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "IND/Isolate_9088/2020|MW555597.1|20-06-30", +"branch_attrs": { + "labels": { "nuc mutations": "G14245A,G28325A" }, +"mutations": { "nuc" : [ "G14245A","G28325A" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-06-30"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/763/2020|MT577009.1|20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 5, "date": {"value": "20"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "31", +"branch_attrs": { + "labels": { "nuc mutations": "G25429T" }, +"mutations": { "nuc" : [ "G25429T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "32", +"branch_attrs": { + "labels": { "nuc mutations": "C16289T" }, +"mutations": { "nuc" : [ "C16289T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.391"}}, +"children":[ { +"name": "England/CAMB-76515/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "T25429G" }, +"mutations": { "nuc" : [ "T25429G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AE294/2020|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "T4587A,G12833A,C15824T" }, +"mutations": { "nuc" : [ "T4587A","G12833A","C15824T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "33", +"branch_attrs": { + "labels": { "nuc mutations": "C13730T" }, +"mutations": { "nuc" : [ "C13730T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.104"}}, +"children":[ { +"name": "England/LEED-2A8D10/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C25916T" }, +"mutations": { "nuc" : [ "C25916T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AC6F4/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C6558T,G9130T,G26529T" }, +"mutations": { "nuc" : [ "C6558T","G9130T","G26529T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "34", +"branch_attrs": { + "labels": { "nuc mutations": "C25916T" }, +"mutations": { "nuc" : [ "C25916T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.88"}}, +"children":[ { +"name": "35", +"branch_attrs": { + "labels": { "nuc mutations": "A10874G,T26677C" }, +"mutations": { "nuc" : [ "A10874G","T26677C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.254"}}, +"children":[ { +"name": "36", +"branch_attrs": { + "labels": { "nuc mutations": "G25440A,G29745T" }, +"mutations": { "nuc" : [ "G25440A","G29745T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/EDB2049/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "T25916C" }, +"mutations": { "nuc" : [ "T25916C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-18"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB2100/2020|20-04-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-19"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/CAMB-1AC7D3/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "A13863G" }, +"mutations": { "nuc" : [ "A13863G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/CAMB-7EBDF/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "A13433G,C18377T" }, +"mutations": { "nuc" : [ "A13433G","C18377T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "37", +"branch_attrs": { + "labels": { "nuc mutations": "C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T" }, +"mutations": { "nuc" : [ "C1288T","G5230T","G10705T","C10747T","G25996A","C28854T","C29284T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.88.1"}}, +"children":[ { +"name": "England/MILK-BB0F16/2020|20-11-17", +"branch_attrs": { + "labels": { "nuc mutations": "G7675T,C12406T" }, +"mutations": { "nuc" : [ "G7675T","C12406T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-11-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-BBDD4C/2020|20-11-22", +"branch_attrs": { + "labels": { "nuc mutations": "C2939T,C5934T,C21635T,T27988C,C28775T" }, +"mutations": { "nuc" : [ "C2939T","C5934T","C21635T","T27988C","C28775T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "38", +"branch_attrs": { + "labels": { "nuc mutations": "G17278T,C19610T,T26906C,G29688T,G29757T" }, +"mutations": { "nuc" : [ "G17278T","C19610T","T26906C","G29688T","G29757T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.79"}}, +"children":[ { +"name": "Scotland/CVR2381/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1848T" }, +"mutations": { "nuc" : [ "C1848T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR2197/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "G21776T" }, +"mutations": { "nuc" : [ "G21776T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-11"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "39", +"branch_attrs": { + "labels": { "nuc mutations": "A28841G" }, +"mutations": { "nuc" : [ "A28841G" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.248"}}, +"children":[ { +"name": "Scotland/CVR3417/2020|20-05-07", +"branch_attrs": { + "labels": { "nuc mutations": "G3689A,T11660A,C29743T" }, +"mutations": { "nuc" : [ "G3689A","T11660A","C29743T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-07"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR1519/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A6441G" }, +"mutations": { "nuc" : [ "A6441G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-03"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "40", +"branch_attrs": { + "labels": { "nuc mutations": "G1141T" }, +"mutations": { "nuc" : [ "G1141T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.251"}}, +"children":[ { +"name": "England/MILK-93B73B/2020|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "C3817T,C25160T,C28099T" }, +"mutations": { "nuc" : [ "C3817T","C25160T","C28099T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9589F6/2020|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "C7488T,C14396T" }, +"mutations": { "nuc" : [ "C7488T","C14396T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "41", +"branch_attrs": { + "labels": { "nuc mutations": "C28045T" }, +"mutations": { "nuc" : [ "C28045T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.250"}}, +"children":[ { +"name": "England/BRIS-128441/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "G10324T,C22713T" }, +"mutations": { "nuc" : [ "G10324T","C22713T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7C39D/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "G2885T,G26458C,C29253T" }, +"mutations": { "nuc" : [ "G2885T","G26458C","C29253T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "42", +"branch_attrs": { + "labels": { "nuc mutations": "C3602T,A24232G" }, +"mutations": { "nuc" : [ "C3602T","A24232G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.392"}}, +"children":[ { +"name": "England/NORW-E8C37/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C11460T" }, +"mutations": { "nuc" : [ "C11460T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-E75A6/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "T3602C,C6538T,T21206G" }, +"mutations": { "nuc" : [ "T3602C","C6538T","T21206G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "43", +"branch_attrs": { + "labels": { "nuc mutations": "G1589A,G29474T" }, +"mutations": { "nuc" : [ "G1589A","G29474T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.252"}}, +"children":[ { +"name": "Wales/PHWC-3122E/2020|20-04-10", +"branch_attrs": { + "labels": { "nuc mutations": "A22457G" }, +"mutations": { "nuc" : [ "A22457G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-10"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-1645EC/2020|20-05-10", +"branch_attrs": { + "labels": { "nuc mutations": "A11438G" }, +"mutations": { "nuc" : [ "A11438G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-10"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "44", +"branch_attrs": { + "labels": { "nuc mutations": "G21538T" }, +"mutations": { "nuc" : [ "G21538T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.249"}}, +"children":[ { +"name": "England/ALDP-50085E/2020|20-06-27", +"branch_attrs": { + "labels": { "nuc mutations": "T11164G,G15406T,G22332A,G27583T,G29427T" }, +"mutations": { "nuc" : [ "T11164G","G15406T","G22332A","G27583T","G29427T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-127E8/2020|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "45", +"branch_attrs": { + "labels": { "nuc mutations": "G28514T" }, +"mutations": { "nuc" : [ "G28514T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.105"}}, +"children":[ { +"name": "England/CAMB-75BD8/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C18060T" }, +"mutations": { "nuc" : [ "C18060T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "T4579A,C5175T,T18552C,C25521T,G27877T" }, +"mutations": { "nuc" : [ "T4579A","C5175T","T18552C","C25521T","G27877T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-01"}, "country": {"value": "UnitedKingdom"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "46", +"branch_attrs": { + "labels": { "nuc mutations": "G1914A,T16456C" }, +"mutations": { "nuc" : [ "G1914A","T16456C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.152"}}, +"children":[ { +"name": "England/ALDP-9ED9F6/2020|20-05-05", +"branch_attrs": { + "labels": { "nuc mutations": "C10681T,G16855T,C26060T,C29614T" }, +"mutations": { "nuc" : [ "C10681T","G16855T","C26060T","C29614T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-944BD9/2020|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "G4399T,G27746T" }, +"mutations": { "nuc" : [ "G4399T","G27746T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "47", +"branch_attrs": { + "labels": { "nuc mutations": "C25665T,G28325T" }, +"mutations": { "nuc" : [ "C25665T","G28325T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.103"}}, +"children":[ { +"name": "USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C15540T" }, +"mutations": { "nuc" : [ "C15540T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "G16075T" }, +"mutations": { "nuc" : [ "G16075T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "48", +"branch_attrs": { + "labels": { "nuc mutations": "C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T" }, +"mutations": { "nuc" : [ "C3487T","C11308T","T15264C","C16332T","C19170T","C25791T","C28854T","C29614T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.188"}}, +"children":[ { +"name": "USA/WA-S3017/2020|MW474188.1|20-08-15", +"branch_attrs": { + "labels": { "nuc mutations": "G4508A,T7884C,C21811T" }, +"mutations": { "nuc" : [ "G4508A","T7884C","C21811T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2852/2020|MW079820.1|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C17795T,G26230T" }, +"mutations": { "nuc" : [ "C17795T","G26230T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "49", +"branch_attrs": { + "labels": { "nuc mutations": "G3871T" }, +"mutations": { "nuc" : [ "G3871T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.378"}}, +"children":[ { +"name": "USA/WI-UW-26/2020|MT706147.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "A29797G" }, +"mutations": { "nuc" : [ "A29797G" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/IL-QDX-2568/2020|MW191367.1|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "C19862T" }, +"mutations": { "nuc" : [ "C19862T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "50", +"branch_attrs": { + "labels": { "nuc mutations": "C2939T" }, +"mutations": { "nuc" : [ "C2939T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.199"}}, +"children":[ { +"name": "USA/ID-QDX-1727/2020|MW190466.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "C6401T,C18877T,G28882T" }, +"mutations": { "nuc" : [ "C6401T","C18877T","G28882T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "T11698C,C18322T" }, +"mutations": { "nuc" : [ "T11698C","C18322T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "51", +"branch_attrs": { + "labels": { "nuc mutations": "A696C" }, +"mutations": { "nuc" : [ "A696C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.139"}}, +"children":[ { +"name": "USA/IN-QDX-184/2020|MT786818.1|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "G3871T,T27299C" }, +"mutations": { "nuc" : [ "G3871T","T27299C" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-558/2020|MT750137.1|20-06-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 5, "date": {"value": "20-06-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "52", +"branch_attrs": { + "labels": { "nuc mutations": "G24077T" }, +"mutations": { "nuc" : [ "G24077T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.91"}}, +"children":[ { +"name": "AUS/VIC2260/2020|MT972173.1|20-06-22", +"branch_attrs": { + "labels": { "nuc mutations": "G14294A,A23746G,T24077A,A29622C" }, +"mutations": { "nuc" : [ "G14294A","A23746G","T24077A","A29622C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-22"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/EXET-1358BE/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "A20092G,T28630G" }, +"mutations": { "nuc" : [ "A20092G","T28630G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "53", +"branch_attrs": { + "labels": { "nuc mutations": "G25563T" }, +"mutations": { "nuc" : [ "G25563T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.350"}}, +"children":[ { +"name": "54", +"branch_attrs": { + "labels": { "nuc mutations": "C8389T" }, +"mutations": { "nuc" : [ "C8389T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110"}}, +"children":[ { +"name": "55", +"branch_attrs": { + "labels": { "nuc mutations": "G27915A" }, +"mutations": { "nuc" : [ "G27915A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/FL-BPHL-0553/2020|MT834693.1|20-06-30", +"branch_attrs": { + "labels": { "nuc mutations": "C815T,C3411T,T10795C,A17521G,C18452T" }, +"mutations": { "nuc" : [ "C815T","C3411T","T10795C","A17521G","C18452T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "56", +"branch_attrs": { + "labels": { "nuc mutations": "C601T" }, +"mutations": { "nuc" : [ "C601T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/FL-BPHL-0540/2020|MT834625.1|20-03-21", +"branch_attrs": { + "labels": { "nuc mutations": "A17521G,A22206G" }, +"mutations": { "nuc" : [ "A17521G","A22206G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "57", +"branch_attrs": { + "labels": { "nuc mutations": "G12832T" }, +"mutations": { "nuc" : [ "G12832T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110.3"}}, +"children":[ { +"name": "USA/COVID20-0537/2020|MT981422.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C29503T" }, +"mutations": { "nuc" : [ "C29503T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/COVID20-1129/2020|MW067826.1|20-07-10", +"branch_attrs": { + "labels": { "nuc mutations": "A28165G" }, +"mutations": { "nuc" : [ "A28165G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "58", +"branch_attrs": { + "labels": { "nuc mutations": "G1319A" }, +"mutations": { "nuc" : [ "G1319A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C23551T,G27084T" }, +"mutations": { "nuc" : [ "C23551T","G27084T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-02"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "59", +"branch_attrs": { + "labels": { "nuc mutations": "G2945A,C10156T" }, +"mutations": { "nuc" : [ "G2945A","C10156T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110.1"}}, +"children":[ { +"name": "CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "T17208C" }, +"mutations": { "nuc" : [ "T17208C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-18"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-269/2020|MT429191.1|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "A23588T,C27657T" }, +"mutations": { "nuc" : [ "A23588T","C27657T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "60", +"branch_attrs": { + "labels": { "nuc mutations": "C23453T" }, +"mutations": { "nuc" : [ "C23453T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110.2"}}, +"children":[ { +"name": "England/LEED-2A91D7/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "T1778C,C6762T,C28849T" }, +"mutations": { "nuc" : [ "T1778C","C6762T","C28849T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LEED-2A87C7/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "G3230A" }, +"mutations": { "nuc" : [ "G3230A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "C1997T" }, +"mutations": { "nuc" : [ "C1997T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-06-02"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "61", +"branch_attrs": { + "labels": { "nuc mutations": "C1059T" }, +"mutations": { "nuc" : [ "C1059T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": "20C"}, "MAT_Clade_1": {"value": "B.1.371"}}, +"children":[ { +"name": "62", +"branch_attrs": { + "labels": { "nuc mutations": "C24381T" }, +"mutations": { "nuc" : [ "C24381T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/CA-CZB-1434/2020|MT628140.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "C23718T" }, +"mutations": { "nuc" : [ "C23718T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "63", +"branch_attrs": { + "labels": { "nuc mutations": "C24442T" }, +"mutations": { "nuc" : [ "C24442T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/VA-DCLS-0676/2020|MT911804.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-QDX-476/2020|MW064508.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "64", +"branch_attrs": { + "labels": { "nuc mutations": "A13512T,G13513T,G13514A" }, +"mutations": { "nuc" : [ "A13512T","G13513T","G13514A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.446"}}, +"children":[ { +"name": "USA/WA-UW-4105/2020|MT358746.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "T1333A,T1334A" }, +"mutations": { "nuc" : [ "T1333A","T1334A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-2220/2020|MT345839.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "T1059C,C15763T,T25563G" }, +"mutations": { "nuc" : [ "T1059C","C15763T","T25563G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "65", +"branch_attrs": { + "labels": { "nuc mutations": "G1298A" }, +"mutations": { "nuc" : [ "G1298A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.437"}}, +"children":[ { +"name": "USA/FL-BPHL-1565/2020|MW056116.1|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T" }, +"mutations": { "nuc" : [ "G12694A","C17639T","A18529G","A20742T","C21637T","C27752T","G29628T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-0510/2020|MT834668.1|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "C344T,C5090T,C10228T,A22001G" }, +"mutations": { "nuc" : [ "C344T","C5090T","C10228T","A22001G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "66", +"branch_attrs": { + "labels": { "nuc mutations": "T20037C" }, +"mutations": { "nuc" : [ "T20037C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.485"}}, +"children":[ { +"name": "USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "G2900T,C23179T" }, +"mutations": { "nuc" : [ "G2900T","C23179T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "G28073T" }, +"mutations": { "nuc" : [ "G28073T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "67", +"branch_attrs": { + "labels": { "nuc mutations": "T1059C,C1594T,C11109T" }, +"mutations": { "nuc" : [ "T1059C","C1594T","C11109T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.22"}}, +"children":[ { +"name": "England/CAMB-7A7DF/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G8578A" }, +"mutations": { "nuc" : [ "G8578A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_18/2020|LR878352.1|20-03-09", +"branch_attrs": { + "labels": { "nuc mutations": "C23506T" }, +"mutations": { "nuc" : [ "C23506T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-09"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "68", +"branch_attrs": { + "labels": { "nuc mutations": "C18555T,C28892T" }, +"mutations": { "nuc" : [ "C18555T","C28892T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.349"}}, +"children":[ { +"name": "USA/VA-DCLS-1557/2020|MW208010.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "C25207T" }, +"mutations": { "nuc" : [ "C25207T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1018/2020|MT966219.1|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "A6035G" }, +"mutations": { "nuc" : [ "A6035G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "69", +"branch_attrs": { + "labels": { "nuc mutations": "C2668T" }, +"mutations": { "nuc" : [ "C2668T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.453"}}, +"children":[ { +"name": "USA/CA-CZB-11119/2020|MW276517.1|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,G2867T,C12651T" }, +"mutations": { "nuc" : [ "C1912T","G2867T","C12651T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11132/2020|MW276510.1|20-05-23", +"branch_attrs": { + "labels": { "nuc mutations": "T18240C,T28009C" }, +"mutations": { "nuc" : [ "T18240C","T28009C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "70", +"branch_attrs": { + "labels": { "nuc mutations": "G24368T" }, +"mutations": { "nuc" : [ "G24368T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "71", +"branch_attrs": { + "labels": { "nuc mutations": "C10376T,G18583T,G29773T" }, +"mutations": { "nuc" : [ "C10376T","G18583T","G29773T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.44"}}, +"children":[ { +"name": "Wales/PHWC-340A9/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "G7675T,G18318T,T21745C,C27610T" }, +"mutations": { "nuc" : [ "G7675T","G18318T","T21745C","C27610T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-20"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-1667A8/2020|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C" }, +"mutations": { "nuc" : [ "C2065T","G4207T","T9485C","T10376C","A21515G","G23868T","G27390C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-26"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "72", +"branch_attrs": { + "labels": { "nuc mutations": "A3103C,C5893T,A28117T" }, +"mutations": { "nuc" : [ "A3103C","C5893T","A28117T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.491"}}, +"children":[ { +"name": "England/CAMB-83FBD/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AD004/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "A28356G" }, +"mutations": { "nuc" : [ "A28356G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "73", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G" }, +"mutations": { "nuc" : [ "A10323G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "74", +"branch_attrs": { + "labels": { "nuc mutations": "T15276A,G28842T" }, +"mutations": { "nuc" : [ "T15276A","G28842T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.361"}}, +"children":[ { +"name": "USA/FL-BPHL-1022/2020|MT966234.1|20-07-20", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T,A15276T,G20679T,T21291C" }, +"mutations": { "nuc" : [ "G11417T","A15276T","G20679T","T21291C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T" }, +"mutations": { "nuc" : [ "G1882T","C5178T","T9694C","C13923T","G15543T","A19080G","A27778G","G28321T","G29511T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-12-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "75", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T" }, +"mutations": { "nuc" : [ "G174T","G5230T","A21801C","G22813T","G23012A","A23063T","C23664T","C25904T","C26456T","C28887T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": "20H/501Y.V2"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/PHEC-14F5D8/2020|20-12-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A" }, +"mutations": { "nuc" : [ "C6525T","G13122A","A15657G","C21801A","G22205C","T23905A","T25171C","G27516A","G27933A" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-12-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "76", +"branch_attrs": { + "labels": { "nuc mutations": "A22206G" }, +"mutations": { "nuc" : [ "A22206G" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.351"}}, +"children":[ { +"name": "77", +"branch_attrs": { + "labels": { "nuc mutations": "A2692T,C21614T,C26645T" }, +"mutations": { "nuc" : [ "A2692T","C21614T","C26645T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/EDB11343/2020|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "G9049T,C20405T,A25806G" }, +"mutations": { "nuc" : [ "G9049T","C20405T","A25806G" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-26"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB11342/2020|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "A4459G,A18846G" }, +"mutations": { "nuc" : [ "A4459G","A18846G" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-26"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/QEUH-CAF17D/2020|20-12-15", +"branch_attrs": { + "labels": { "nuc mutations": "C9142T,C19524T" }, +"mutations": { "nuc" : [ "C9142T","C19524T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "78", +"branch_attrs": { + "labels": { "nuc mutations": "C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T" }, +"mutations": { "nuc" : [ "C683T","T10249C","G17427T","C25546T","G25970T","G25971A","C28854T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.362"}}, +"children":[ { +"name": "England/LIVE-DAB556/2020|20-10-18", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C" }, +"mutations": { "nuc" : [ "G174T","T683C","C10249T","T17427G","T25970G","A25971G","T28854C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-14DE93/2020|20-11-11", +"branch_attrs": { + "labels": { "nuc mutations": "G204T,C6286T,C21614T,C22227T,T26424C" }, +"mutations": { "nuc" : [ "G204T","C6286T","C21614T","C22227T","T26424C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "79", +"branch_attrs": { + "labels": { "nuc mutations": "G24368T,C24621T" }, +"mutations": { "nuc" : [ "G24368T","C24621T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.489"}}, +"children":[ { +"name": "Wales/PHWC-1658A6/2020|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "G2830A,A2903G,C7869T" }, +"mutations": { "nuc" : [ "G2830A","A2903G","C7869T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-19"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2E0A2/2020|20-04-10", +"branch_attrs": { + "labels": { "nuc mutations": "C18568T" }, +"mutations": { "nuc" : [ "C18568T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-10"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "80", +"branch_attrs": { + "labels": { "nuc mutations": "C18744T,A18978G,A29391G" }, +"mutations": { "nuc" : [ "C18744T","A18978G","A29391G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.302"}}, +"children":[ { +"name": "England/ALDP-952A53/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1190T,G25273T,C29249T" }, +"mutations": { "nuc" : [ "C1190T","G25273T","C29249T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-95A745/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G11708A,C14724T,C17550T" }, +"mutations": { "nuc" : [ "G11708A","C14724T","C17550T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "81", +"branch_attrs": { + "labels": { "nuc mutations": "C4999T,C13730T" }, +"mutations": { "nuc" : [ "C4999T","C13730T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.431"}}, +"children":[ { +"name": "Scotland/EDB3137/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "G25494T,C29719T" }, +"mutations": { "nuc" : [ "G25494T","C29719T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-06"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB2810/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C19113T,T21752C" }, +"mutations": { "nuc" : [ "C19113T","T21752C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-30"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "82", +"branch_attrs": { + "labels": { "nuc mutations": "A2018G,C18029T" }, +"mutations": { "nuc" : [ "A2018G","C18029T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.314"}}, +"children":[ { +"name": "USA/CA-QDX-434/2020|MW064457.1|20-03-20", +"branch_attrs": { + "labels": { "nuc mutations": "C8697T,T18029C" }, +"mutations": { "nuc" : [ "C8697T","T18029C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-02231/2020|MT444626.1|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C2445T,G20890A,G25947T,G28373T,G28374T" }, +"mutations": { "nuc" : [ "C2445T","G20890A","G25947T","G28373T","G28374T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "83", +"branch_attrs": { + "labels": { "nuc mutations": "C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T" }, +"mutations": { "nuc" : [ "C2939T","C3736T","G7037A","C7732T","C25517T","C26110T","C28310T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.333"}}, +"children":[ { +"name": "USA/WA-S2850/2020|MW079819.1|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "A4935G,T26510C,G29736T,C29762G" }, +"mutations": { "nuc" : [ "A4935G","T26510C","G29736T","C29762G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2746/2020|MT947577.1|20-07-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "84", +"branch_attrs": { + "labels": { "nuc mutations": "G19542T,C23551T,C28821A" }, +"mutations": { "nuc" : [ "G19542T","C23551T","C28821A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.448"}}, +"children":[ { +"name": "USA/WI-UW-879/2020|MT846567.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "G3403T,G13201T,C26527T" }, +"mutations": { "nuc" : [ "G3403T","G13201T","C26527T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-05590/2020|MW084605.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "A2151G" }, +"mutations": { "nuc" : [ "A2151G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "85", +"branch_attrs": { + "labels": { "nuc mutations": "G18281A,A20755C,G25784T" }, +"mutations": { "nuc" : [ "G18281A","A20755C","G25784T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.310"}}, +"children":[ { +"name": "Netherlands/NA_588/2020|LR883860.1|20", +"branch_attrs": { + "labels": { "nuc mutations": "A20742G" }, +"mutations": { "nuc" : [ "A20742G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_583/2020|LR883819.1|20", +"branch_attrs": { + "labels": { "nuc mutations": "C4113T,C6555T,C25731T" }, +"mutations": { "nuc" : [ "C4113T","C6555T","C25731T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "86", +"branch_attrs": { + "labels": { "nuc mutations": "C11916T" }, +"mutations": { "nuc" : [ "C11916T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "87", +"branch_attrs": { + "labels": { "nuc mutations": "G1990T,C2939T,A5264G,C16457T" }, +"mutations": { "nuc" : [ "G1990T","C2939T","A5264G","C16457T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.309"}}, +"children":[ { +"name": "USA/WA-S2992/2020|MW474166.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A" }, +"mutations": { "nuc" : [ "G521T","T847C","A2166G","C5221T","C6582T","G11521T","C22712T","C26010T","G26262A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-08-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-5698/2020|MW276260.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "G596A,G1820A,G9526T,C14183T,C28344T" }, +"mutations": { "nuc" : [ "G596A","G1820A","G9526T","C14183T","C28344T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "88", +"branch_attrs": { + "labels": { "nuc mutations": "G28376T" }, +"mutations": { "nuc" : [ "G28376T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.359"}}, +"children":[ { +"name": "USA/GA-CDC-4459/2020|MW130876.1|20-09-11", +"branch_attrs": { + "labels": { "nuc mutations": "T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T" }, +"mutations": { "nuc" : [ "T241A","C10039T","A12916T","C17733T","G18520A","T23431C","G26828A","A27224G","G27915A","C29077T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NY-QDX-1993/2020|MW190794.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "89", +"branch_attrs": { + "labels": { "nuc mutations": "G26020T" }, +"mutations": { "nuc" : [ "G26020T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.493"}}, +"children":[ { +"name": "USA/FL-BPHL-0321/2020|MT757040.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "T29128C" }, +"mutations": { "nuc" : [ "T29128C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1841/2020|MW206510.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C4012T" }, +"mutations": { "nuc" : [ "C4012T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "90", +"branch_attrs": { + "labels": { "nuc mutations": "G1186A,T4033C,C8986T,C25413T,C28674T,G28857T" }, +"mutations": { "nuc" : [ "G1186A","T4033C","C8986T","C25413T","C28674T","G28857T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.496"}}, +"children":[ { +"name": "USA/MN-MDH-1583/2020|MT997701.1|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "C8109T" }, +"mutations": { "nuc" : [ "C8109T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1585/2020|MT997703.1|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "T12925C" }, +"mutations": { "nuc" : [ "T12925C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "91", +"branch_attrs": { + "labels": { "nuc mutations": "C18998T,G29540A" }, +"mutations": { "nuc" : [ "C18998T","G29540A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "92", +"branch_attrs": { + "labels": { "nuc mutations": "A20553G" }, +"mutations": { "nuc" : [ "A20553G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.507"}}, +"children":[ { +"name": "USA/COVID20-0777/2020|MW002812.1|20-06-26", +"branch_attrs": { + "labels": { "nuc mutations": "G4285A,G6421C,C16173T" }, +"mutations": { "nuc" : [ "G4285A","G6421C","C16173T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1147/2020|MT992749.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "G22487C" }, +"mutations": { "nuc" : [ "G22487C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "93", +"branch_attrs": { + "labels": { "nuc mutations": "G25947C" }, +"mutations": { "nuc" : [ "G25947C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.503"}}, +"children":[ { +"name": "USA/VA-DCLS-1512/2020|MW197472.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G526T,T6949C,C29366T,C29750T" }, +"mutations": { "nuc" : [ "G526T","T6949C","C29366T","C29750T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-1275/2020|MT533209.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C23685T,G27703T" }, +"mutations": { "nuc" : [ "C23685T","G27703T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "94", +"branch_attrs": { + "labels": { "nuc mutations": "C28863T" }, +"mutations": { "nuc" : [ "C28863T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.499"}}, +"children":[ { +"name": "USA/NY-QDX-2365/2020|MW191144.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ARG/Cordoba-891/2020|MW633900.1|20-09-14", +"branch_attrs": { + "labels": { "nuc mutations": "A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T" }, +"mutations": { "nuc" : [ "A642G","A2647G","C7279T","C7528T","C9803T","C10450T","C29445T","C29555T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-14"}, "country": {"value": "ARG"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "95", +"branch_attrs": { + "labels": { "nuc mutations": "C19145T" }, +"mutations": { "nuc" : [ "C19145T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.508"}}, +"children":[ { +"name": "USA/CA-CZB-5668/2020|MW276489.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "G4285T,T5059C,C16230T,C23525T,G25471T" }, +"mutations": { "nuc" : [ "G4285T","T5059C","C16230T","C23525T","G25471T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2139/2020|MT750510.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5540A" }, +"mutations": { "nuc" : [ "C5540A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "96", +"branch_attrs": { + "labels": { "nuc mutations": "T13914C" }, +"mutations": { "nuc" : [ "T13914C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.502"}}, +"children":[ { +"name": "USA/FL-BPHL-1324/2020|MW023523.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T" }, +"mutations": { "nuc" : [ "C4276T","G7936T","C14928T","C15960T","C19186T","T20838C","C23536T","C23595T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1988/2020|MW286761.1|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "G3638A,C16217T" }, +"mutations": { "nuc" : [ "G3638A","C16217T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "97", +"branch_attrs": { + "labels": { "nuc mutations": "C10458T,G26828T" }, +"mutations": { "nuc" : [ "C10458T","G26828T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.501"}}, +"children":[ { +"name": "USA/NC-QDX-174/2020|MT786825.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "C18693A" }, +"mutations": { "nuc" : [ "C18693A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/1453xE2/2020|MW521402.1|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "G7042T,C11396A,C21855T,G28655T" }, +"mutations": { "nuc" : [ "G7042T","C11396A","C21855T","G28655T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "98", +"branch_attrs": { + "labels": { "nuc mutations": "A9984C,G25445T" }, +"mutations": { "nuc" : [ "A9984C","G25445T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.500"}}, +"children":[ { +"name": "USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "A9935G,T16632C,C19185T,C28824T,G29628T" }, +"mutations": { "nuc" : [ "A9935G","T16632C","C19185T","C28824T","G29628T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2867/2020|MW173410.1|20-09-20", +"branch_attrs": { + "labels": { "nuc mutations": "G9278A,G11693T,C14937T,C21017T,C21219T" }, +"mutations": { "nuc" : [ "G9278A","G11693T","C14937T","C21017T","C21219T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "99", +"branch_attrs": { + "labels": { "nuc mutations": "C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T" }, +"mutations": { "nuc" : [ "C66A","C4455T","C7768T","A8773G","C17304T","T24805C","C26270T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.505"}}, +"children":[ { +"name": "England/MILK-6166F0/2020|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "T22912G" }, +"mutations": { "nuc" : [ "T22912G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9BCA93/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C782T,G1210T,C28045T" }, +"mutations": { "nuc" : [ "C782T","G1210T","C28045T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "100", +"branch_attrs": { + "labels": { "nuc mutations": "G26217T" }, +"mutations": { "nuc" : [ "G26217T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.504"}}, +"children":[ { +"name": "ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19", +"branch_attrs": { + "labels": { "nuc mutations": "C21731T,G29645T" }, +"mutations": { "nuc" : [ "C21731T","G29645T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-19"}, "country": {"value": "ISR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-947D3A/2020|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "G105T,T10288C,C13821T,C26625T,A29752T" }, +"mutations": { "nuc" : [ "G105T","T10288C","C13821T","C26625T","A29752T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "101", +"branch_attrs": { + "labels": { "nuc mutations": "C715T,A23586G" }, +"mutations": { "nuc" : [ "C715T","A23586G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.3"}}, +"children":[ { +"name": "USA/WI-UW-1126/2020|MT929103.1|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "G487A,C4876T,A5877G,C18555T,A27489G,C28045T" }, +"mutations": { "nuc" : [ "G487A","C4876T","A5877G","C18555T","A27489G","C28045T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-1071/2020|MT929023.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "G1957T,C2623T,C13115T,G22026T" }, +"mutations": { "nuc" : [ "G1957T","C2623T","C13115T","G22026T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "102", +"branch_attrs": { + "labels": { "nuc mutations": "C13252T" }, +"mutations": { "nuc" : [ "C13252T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.494"}}, +"children":[ { +"name": "USA/VA-DCLS-0481/2020|MT951936.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "C799T,C6701T,C23604T" }, +"mutations": { "nuc" : [ "C799T","C6701T","C23604T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "103", +"branch_attrs": { + "labels": { "nuc mutations": "C16650T,A20675T,G29179T,G29779T" }, +"mutations": { "nuc" : [ "C16650T","A20675T","G29179T","G29779T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.497"}}, +"children":[ { +"name": "KOR/YS006/2020|MW345824.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C26261T" }, +"mutations": { "nuc" : [ "C26261T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-04"}, "country": {"value": "KOR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "KOR/YS008/2020|MW345825.1|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-07"}, "country": {"value": "KOR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "104", +"branch_attrs": { + "labels": { "nuc mutations": "G28027T,G29742T" }, +"mutations": { "nuc" : [ "G28027T","G29742T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.495"}}, +"children":[ { +"name": "USA/OR-QDX-3447/2020|MW521776.1|20-08-11", +"branch_attrs": { + "labels": { "nuc mutations": "C12754T,A14012T,G14250T,C22687T" }, +"mutations": { "nuc" : [ "C12754T","A14012T","G14250T","C22687T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1037/2020|MT642186.1|20-05-03", +"branch_attrs": { + "labels": { "nuc mutations": "A18671C,C25466T" }, +"mutations": { "nuc" : [ "A18671C","C25466T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "105", +"branch_attrs": { + "labels": { "nuc mutations": "G1738T,C11916T,C28087T" }, +"mutations": { "nuc" : [ "G1738T","C11916T","C28087T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.509"}}, +"children":[ { +"name": "USA/FL-BPHL-1680/2020|MW166145.1|20-08-11", +"branch_attrs": { + "labels": { "nuc mutations": "G3242A,T11449C,T14508C,A26126T,T28087C" }, +"mutations": { "nuc" : [ "G3242A","T11449C","T14508C","A26126T","T28087C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1350/2020|MW023549.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "G9928T,A20716G,A24383G,G25538T,G28123T" }, +"mutations": { "nuc" : [ "G9928T","A20716G","A24383G","G25538T","G28123T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "106", +"branch_attrs": { + "labels": { "nuc mutations": "A12820G,C16762T,A17637G,C20762T,C28887T" }, +"mutations": { "nuc" : [ "A12820G","C16762T","A17637G","C20762T","C28887T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.346"}}, +"children":[ { +"name": "USA/NMDOH-2020305755/2020|MW070069.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "C676T,A3536G,C29370G" }, +"mutations": { "nuc" : [ "C676T","A3536G","C29370G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NMDOH-2020308468/2020|MW228235.1|20-08-24", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "107", +"branch_attrs": { + "labels": { "nuc mutations": "C379A" }, +"mutations": { "nuc" : [ "C379A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.320"}}, +"children":[ { +"name": "USA/CA-CZB-1517/2020|MT628191.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C10369T,C12115T,G12202T" }, +"mutations": { "nuc" : [ "C10369T","C12115T","G12202T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-1793/2020|MT750334.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "A20503G" }, +"mutations": { "nuc" : [ "A20503G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "108", +"branch_attrs": { + "labels": { "nuc mutations": "C27964T" }, +"mutations": { "nuc" : [ "C27964T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.521"}}, +"children":[ { +"name": "USA/WA-UW-2108/2020|MT345811.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "G3259T,T27964C" }, +"mutations": { "nuc" : [ "G3259T","T27964C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1434/2020|MT893000.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "G14580A,T19527C,A19821G,G22346T,C28099T,C29722T" }, +"mutations": { "nuc" : [ "G14580A","T19527C","A19821G","G22346T","C28099T","C29722T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "109", +"branch_attrs": { + "labels": { "nuc mutations": "C10319T,A18424G,C21304T,G25907T,C28472T,C28869T" }, +"mutations": { "nuc" : [ "C10319T","A18424G","C21304T","G25907T","C28472T","C28869T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": "20G"}, "MAT_Clade_1": {"value": "B.1.2"}}, +"children":[ { +"name": "USA/AK-PHL660/2020|MW173157.1|20-06-27", +"branch_attrs": { + "labels": { "nuc mutations": "A16872C" }, +"mutations": { "nuc" : [ "A16872C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "110", +"branch_attrs": { + "labels": { "nuc mutations": "G9928T" }, +"mutations": { "nuc" : [ "G9928T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/WI-UW-1194/2020|MT981478.1|20-08-11", +"branch_attrs": { + "labels": { "nuc mutations": "C10377T" }, +"mutations": { "nuc" : [ "C10377T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3284/2020|MW134086.1|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "A16148G,C16928T,G29422T" }, +"mutations": { "nuc" : [ "A16148G","C16928T","G29422T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "111", +"branch_attrs": { + "labels": { "nuc mutations": "T833C" }, +"mutations": { "nuc" : [ "T833C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "112", +"branch_attrs": { + "labels": { "nuc mutations": "A22320G" }, +"mutations": { "nuc" : [ "A22320G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.426"}}, +"children":[ { +"name": "USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26", +"branch_attrs": { + "labels": { "nuc mutations": "C3411T,G8114A,C11095T,G15908A" }, +"mutations": { "nuc" : [ "C3411T","G8114A","C11095T","G15908A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T" }, +"mutations": { "nuc" : [ "G2525A","C2788T","G6443A","C6539T","C6690T","C10440T","G15451T","C18463T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "113", +"branch_attrs": { + "labels": { "nuc mutations": "G9705T" }, +"mutations": { "nuc" : [ "G9705T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.425"}}, +"children":[ { +"name": "USA/UT-05592/2020|MW054143.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "A3121C,G23009T,G27637A,C29743T" }, +"mutations": { "nuc" : [ "A3121C","G23009T","G27637A","C29743T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C8389T,T19839C,G25523T,T29685G" }, +"mutations": { "nuc" : [ "C8389T","T19839C","G25523T","T29685G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "114", +"branch_attrs": { + "labels": { "nuc mutations": "C28833T" }, +"mutations": { "nuc" : [ "C28833T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.265"}}, +"children":[ { +"name": "USA/MN-QDX-981/2020|MW065078.1|20-03-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0164/2020|MT937827.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C3817T,A23813G" }, +"mutations": { "nuc" : [ "C3817T","A23813G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "115", +"branch_attrs": { + "labels": { "nuc mutations": "C9967T" }, +"mutations": { "nuc" : [ "C9967T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.336"}}, +"children":[ { +"name": "USA/VA-DCLS-1006/2020|MT952676.1|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "T18641C,C23208T,G25793T,C27807G" }, +"mutations": { "nuc" : [ "T18641C","C23208T","G25793T","C27807G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2685/2020|MW191430.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G17590T" }, +"mutations": { "nuc" : [ "G17590T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "116", +"branch_attrs": { + "labels": { "nuc mutations": "G10902A" }, +"mutations": { "nuc" : [ "G10902A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.514"}}, +"children":[ { +"name": "USA/FL-BPHL-0876/2020|MT890355.1|20-07-09", +"branch_attrs": { + "labels": { "nuc mutations": "C7173T,G11596T,C13994T,C25546T" }, +"mutations": { "nuc" : [ "C7173T","G11596T","C13994T","C25546T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0347/2020|MW114984.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G2659T,C3622T,G7936T,T9379A,A12148G,C18687T" }, +"mutations": { "nuc" : [ "G2659T","C3622T","G7936T","T9379A","A12148G","C18687T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "117", +"branch_attrs": { + "labels": { "nuc mutations": "G17808T" }, +"mutations": { "nuc" : [ "G17808T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.450"}}, +"children":[ { +"name": "USA/MN-QDX-1328/2020|MW065415.1|20-03-15", +"branch_attrs": { + "labels": { "nuc mutations": "C9693T" }, +"mutations": { "nuc" : [ "C9693T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1210/2020|MW246004.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C15352T" }, +"mutations": { "nuc" : [ "C15352T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "118", +"branch_attrs": { + "labels": { "nuc mutations": "C24378T" }, +"mutations": { "nuc" : [ "C24378T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.370"}}, +"children":[ { +"name": "USA/UT-00495/2020|MT444543.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G27717A" }, +"mutations": { "nuc" : [ "G27717A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-00353/2020|MT444564.1|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "T11131A" }, +"mutations": { "nuc" : [ "T11131A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "119", +"branch_attrs": { + "labels": { "nuc mutations": "C4878T,A22525G,C29272T,G29449T" }, +"mutations": { "nuc" : [ "C4878T","A22525G","C29272T","G29449T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.435"}}, +"children":[ { +"name": "USA/UT-02970/2020|MW053933.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "A22681C,G28202A" }, +"mutations": { "nuc" : [ "A22681C","G28202A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-08378/2020|MW206039.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C222T,A454G,C11750T,T17772C,G21099T,T29449G" }, +"mutations": { "nuc" : [ "C222T","A454G","C11750T","T17772C","G21099T","T29449G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "120", +"branch_attrs": { + "labels": { "nuc mutations": "G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T" }, +"mutations": { "nuc" : [ "G4520T","A6442G","T6934C","C12374T","C14786T","T15624C","C25904T","C28099T","C28932T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.423"}}, +"children":[ { +"name": "USA/IL-UW-1064/2020|MT929016.1|20-07-26", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1666/2020|MW280480.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "G7936A,A8040G,G29402T" }, +"mutations": { "nuc" : [ "G7936A","A8040G","G29402T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "121", +"branch_attrs": { + "labels": { "nuc mutations": "A19899T,A21464G" }, +"mutations": { "nuc" : [ "A19899T","A21464G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.294"}}, +"children":[ { +"name": "USA/WI-UW-1119/2020|MT929068.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-07-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-1005/2020|MT846691.1|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "G4232T,C9120T,A18500G,G22093A,T23296C,G25444A" }, +"mutations": { "nuc" : [ "G4232T","C9120T","A18500G","G22093A","T23296C","G25444A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "122", +"branch_attrs": { + "labels": { "nuc mutations": "C25777T,C29614T" }, +"mutations": { "nuc" : [ "C25777T","C29614T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.306"}}, +"children":[ { +"name": "USA/FL-BPHL-1651/2020|MW166116.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "G23311T,G24977C" }, +"mutations": { "nuc" : [ "G23311T","G24977C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-2138/2020|MW286694.1|20-06-27", +"branch_attrs": { + "labels": { "nuc mutations": "G25471C,G28899T,G29779T" }, +"mutations": { "nuc" : [ "G25471C","G28899T","G29779T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "123", +"branch_attrs": { + "labels": { "nuc mutations": "T8788C,G26951A" }, +"mutations": { "nuc" : [ "T8788C","G26951A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.39"}}, +"children":[ { +"name": "England/CAMB-7771E/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C4586T" }, +"mutations": { "nuc" : [ "C4586T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7DC91/2020|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "C4321T" }, +"mutations": { "nuc" : [ "C4321T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "124", +"branch_attrs": { + "labels": { "nuc mutations": "C7528T" }, +"mutations": { "nuc" : [ "C7528T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.324"}}, +"children":[ { +"name": "USA/WI-UW-1092/2020|MT929042.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "G271T,T13270C,C28093T,C28890T" }, +"mutations": { "nuc" : [ "G271T","T13270C","C28093T","C28890T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1232/2020|MW309089.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "G8213A" }, +"mutations": { "nuc" : [ "G8213A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "125", +"branch_attrs": { + "labels": { "nuc mutations": "C775T,C27923T,G28975T" }, +"mutations": { "nuc" : [ "C775T","C27923T","G28975T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.328"}}, +"children":[ { +"name": "USA/MD-MDH-0071/2020|MT827237.1|20-05-25", +"branch_attrs": { + "labels": { "nuc mutations": "C23683T" }, +"mutations": { "nuc" : [ "C23683T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0066/2020|MT827232.1|20-05-25", +"branch_attrs": { + "labels": { "nuc mutations": "C3044T,C9979T,C10369T,G19072T" }, +"mutations": { "nuc" : [ "C3044T","C9979T","C10369T","G19072T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "126", +"branch_attrs": { + "labels": { "nuc mutations": "A12557C" }, +"mutations": { "nuc" : [ "A12557C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.341"}}, +"children":[ { +"name": "USA/WA-QDX-235/2020|MT806806.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "A23534T" }, +"mutations": { "nuc" : [ "A23534T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1266/2020|MT821676.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "T4441C,G6125A,C17639T" }, +"mutations": { "nuc" : [ "T4441C","G6125A","C17639T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "127", +"branch_attrs": { + "labels": { "nuc mutations": "C1917T" }, +"mutations": { "nuc" : [ "C1917T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.332"}}, +"children":[ { +"name": "USA/VA-DCLS-0426/2020|MT679166.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "C8327T" }, +"mutations": { "nuc" : [ "C8327T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-0187/2020|MT450889.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "G29431T" }, +"mutations": { "nuc" : [ "G29431T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "128", +"branch_attrs": { + "labels": { "nuc mutations": "C23191T" }, +"mutations": { "nuc" : [ "C23191T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.325"}}, +"children":[ { +"name": "USA/UT-QDX-2224/2020|MW191025.1|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "A25910C" }, +"mutations": { "nuc" : [ "A25910C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0313/2020|MW115058.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C9907T,C17125T,T18144C" }, +"mutations": { "nuc" : [ "C9907T","C17125T","T18144C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "129", +"branch_attrs": { + "labels": { "nuc mutations": "G15906T" }, +"mutations": { "nuc" : [ "G15906T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.293"}}, +"children":[ { +"name": "USA/FL-QDX-1620/2020|MW190373.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C5548T,C28153T" }, +"mutations": { "nuc" : [ "C5548T","C28153T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-0109/2020|MT872200.1|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T" }, +"mutations": { "nuc" : [ "T5260A","C7169T","G13604C","C13876T","A16085G","C19273T","A28081T","C28754T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-04-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "130", +"branch_attrs": { + "labels": { "nuc mutations": "C10582T" }, +"mutations": { "nuc" : [ "C10582T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "131", +"branch_attrs": { + "labels": { "nuc mutations": "C1076T" }, +"mutations": { "nuc" : [ "C1076T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.40"}}, +"children":[ { +"name": "Scotland/EDB3598/2020|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "G22244T,C26461T" }, +"mutations": { "nuc" : [ "G22244T","C26461T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-27"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB2451/2020|20-04-23", +"branch_attrs": { + "labels": { "nuc mutations": "T10963A" }, +"mutations": { "nuc" : [ "T10963A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-23"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "132", +"branch_attrs": { + "labels": { "nuc mutations": "C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T" }, +"mutations": { "nuc" : [ "C3099T","G4960T","C4965T","C6070T","C7303T","C7564T","C10279T","C10301A","C10525T","G10688T","G11851T","C14230A","G21800T","G27632T","C27804T","C28830A","G29402T","G29779T" ] } + }, +"node_attrs": { + "div":25, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.367"}}, +"children":[ { +"name": "England/MILK-9934B2/2020|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "C9246T,C11747T,C13378T,G19056T,C28744T" }, +"mutations": { "nuc" : [ "C9246T","C11747T","C13378T","G19056T","C28744T" ] } + }, +"node_attrs": { "div": 30, "date": {"value": "20-08-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/240029/2020|LR880608.1|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "T27622C" }, +"mutations": { "nuc" : [ "T27622C" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-08-10"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "133", +"branch_attrs": { + "labels": { "nuc mutations": "C28887T" }, +"mutations": { "nuc" : [ "C28887T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "134", +"branch_attrs": { + "labels": { "nuc mutations": "C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T" }, +"mutations": { "nuc" : [ "C1302T","C1519T","A2526G","T3049C","G3689A","A11061G","C11747T","T13345C","A14774G","C15026T","G15438T","T16062C","G17334T","G17721T","G19962T","C25037T","C27945T" ] } + }, +"node_attrs": { + "div":24, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.411"}}, +"children":[ { +"name": "England/RAND-12B3F28/2021|21-02-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-02-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/RAND-12B3CF4/2021|21-02-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-02-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "135", +"branch_attrs": { + "labels": { "nuc mutations": "G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T" }, +"mutations": { "nuc" : [ "G17014T","G21600T","G22018T","T22917G","C26681T","A28272T","C29362T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "136", +"branch_attrs": { + "labels": { "nuc mutations": "G9738C,G13713A,C16394T" }, +"mutations": { "nuc" : [ "G9738C","G13713A","C16394T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.427"}}, +"children":[ { +"name": "USA/CA-QDX-2817/2020|MW460624.1|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "A9492C,C21638T,C25919T" }, +"mutations": { "nuc" : [ "A9492C","C21638T","C25919T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2803/2020|MW460610.1|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "C11345T,C13860T" }, +"mutations": { "nuc" : [ "C11345T","C13860T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "137", +"branch_attrs": { + "labels": { "nuc mutations": "C2395T,T2597C,A12878G,T24349C,G27890T" }, +"mutations": { "nuc" : [ "C2395T","T2597C","A12878G","T24349C","G27890T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.94"}}, +"children":[ { +"name": "USA/CA-QDX-3684/2021|MW545275.1|21-01-08", +"branch_attrs": { + "labels": { "nuc mutations": "T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C" }, +"mutations": { "nuc" : [ "T2395C","G2516T","A3712G","A5780G","A5999G","C7528T","A10323G","C11866T","C13378T","G15452T","T17014G","C19164T","A20268G","T21600G","G21974T","G22917T","T26681C","T27890G","T29362C" ] } + }, +"node_attrs": { "div": 38, "date": {"value": "21-01-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13", +"branch_attrs": { + "labels": { "nuc mutations": "A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T" }, +"mutations": { "nuc" : [ "A1194G","A2406G","A5780G","G15452T","T17014G","A20268G","G22917T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-07-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "138", +"branch_attrs": { + "labels": { "nuc mutations": "C8947T,C12100T" }, +"mutations": { "nuc" : [ "C8947T","C12100T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.429"}}, +"children":[ { +"name": "USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08", +"branch_attrs": { + "labels": { "nuc mutations": "C1380T,C6539T,T7813C,A10417G,A19476G,C21638T,G22708T,G28628T,T29362C" }, +"mutations": { "nuc" : [ "C1380T","C6539T","T7813C","A10417G","A19476G","C21638T","G22708T","G28628T","T29362C" ] } + }, +"node_attrs": { "div": 30, "date": {"value": "21-01-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20", +"branch_attrs": { + "labels": { "nuc mutations": "C1601T,C4918T" }, +"mutations": { "nuc" : [ "C1601T","C4918T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "139", +"branch_attrs": { + "labels": { "nuc mutations": "T1171C,A5747G,C10789T,G17259T,G24007A" }, +"mutations": { "nuc" : [ "T1171C","A5747G","C10789T","G17259T","G24007A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.375"}}, +"children":[ { +"name": "USA/OH-UHTL-3/2020|MW585340.1|20-01-05", +"branch_attrs": { + "labels": { "nuc mutations": "C10228T,C13335T,T14408C,C25611T,G29705T" }, +"mutations": { "nuc" : [ "C10228T","C13335T","T14408C","C25611T","G29705T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-01-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18", +"branch_attrs": { + "labels": { "nuc mutations": "C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G" }, +"mutations": { "nuc" : [ "C1437T","G3231T","C6385A","C14805T","C21431T","C25844T","A26664G" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "140", +"branch_attrs": { + "labels": { "nuc mutations": "C6843T,T11764C,G29402T" }, +"mutations": { "nuc" : [ "C6843T","T11764C","G29402T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.433"}}, +"children":[ { +"name": "USA/MA-MGH-02814/2020|MW454549.1|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "T21294C,G28936A,A29115T" }, +"mutations": { "nuc" : [ "T21294C","G28936A","A29115T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA-MGH-03386/2020|MW454697.1|20-11-09", +"branch_attrs": { + "labels": { "nuc mutations": "C13176T,T17040C,C24106T" }, +"mutations": { "nuc" : [ "C13176T","T17040C","C24106T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-11-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "141", +"branch_attrs": { + "labels": { "nuc mutations": "C28893T" }, +"mutations": { "nuc" : [ "C28893T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.311"}}, +"children":[ { +"name": "USA/TX-DSHS-0780/2020|MW147526.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "G22021A,C22998T,G23501T" }, +"mutations": { "nuc" : [ "G22021A","C22998T","G23501T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1557/2020|MT958254.1|20-08-03", +"branch_attrs": { + "labels": { "nuc mutations": "T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T" }, +"mutations": { "nuc" : [ "T83C","C583T","G2468A","C17410T","A23998G","C25553T","T27856C","G29543T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "142", +"branch_attrs": { + "labels": { "nuc mutations": "T9070C" }, +"mutations": { "nuc" : [ "T9070C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.323"}}, +"children":[ { +"name": "USA/MN-MDH-1596/2020|MT997714.1|20-05-12", +"branch_attrs": { + "labels": { "nuc mutations": "C20325T" }, +"mutations": { "nuc" : [ "C20325T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB0731/2020|MT385450.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "G9049T,T10960C" }, +"mutations": { "nuc" : [ "G9049T","T10960C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "143", +"branch_attrs": { + "labels": { "nuc mutations": "C25688T" }, +"mutations": { "nuc" : [ "C25688T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "144", +"branch_attrs": { + "labels": { "nuc mutations": "C4320T" }, +"mutations": { "nuc" : [ "C4320T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.12"}}, +"children":[ { +"name": "England/MILK-958598/2020|20-06-09", +"branch_attrs": { + "labels": { "nuc mutations": "C5175T,A15283G,G16861T,C20844T,T27539C" }, +"mutations": { "nuc" : [ "C5175T","A15283G","G16861T","C20844T","T27539C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-4F4092/2020|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "C1627T,C11494T,C14076T,T18309C,G20670A,C29529T" }, +"mutations": { "nuc" : [ "C1627T","C11494T","C14076T","T18309C","G20670A","C29529T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "145", +"branch_attrs": { + "labels": { "nuc mutations": "T13006C" }, +"mutations": { "nuc" : [ "T13006C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.356"}}, +"children":[ { +"name": "England/LIVE-A91F7/2020|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "C19186T" }, +"mutations": { "nuc" : [ "C19186T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AE865/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "C1437T,A24070T,C26013T,C27945T" }, +"mutations": { "nuc" : [ "C1437T","A24070T","C26013T","C27945T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "146", +"branch_attrs": { + "labels": { "nuc mutations": "G3892T" }, +"mutations": { "nuc" : [ "G3892T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.268"}}, +"children":[ { +"name": "USA/MA_MGH_00458/2020|MT520347.1|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "G26787A" }, +"mutations": { "nuc" : [ "G26787A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00445/2020|MT520273.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G20062T" }, +"mutations": { "nuc" : [ "G20062T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "147", +"branch_attrs": { + "labels": { "nuc mutations": "C2536T,C10376T,C14931T,C24082T,C27005T,A28880G" }, +"mutations": { "nuc" : [ "C2536T","C10376T","C14931T","C24082T","C27005T","A28880G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.318"}}, +"children":[ { +"name": "USA/FL-BPHL-1724/2020|MW206414.1|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "G2272A,C7267T,G21193T" }, +"mutations": { "nuc" : [ "G2272A","C7267T","G21193T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1147/2020|MT956757.1|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "A5368G,C14220T,G21193T,C29363T" }, +"mutations": { "nuc" : [ "A5368G","C14220T","G21193T","C29363T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "148", +"branch_attrs": { + "labels": { "nuc mutations": "C16260T,C28821A" }, +"mutations": { "nuc" : [ "C16260T","C28821A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.369"}}, +"children":[ { +"name": "USA/CA-CZB-3886/2020|MW134282.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5979T,A9337G,C18695T" }, +"mutations": { "nuc" : [ "C5979T","A9337G","C18695T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/IL-UW-385/2020|MT772536.1|20-05-23", +"branch_attrs": { + "labels": { "nuc mutations": "C12525T,G21604T,C25728T,G28378T" }, +"mutations": { "nuc" : [ "C12525T","G21604T","C25728T","G28378T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "149", +"branch_attrs": { + "labels": { "nuc mutations": "C20555T,C21772T" }, +"mutations": { "nuc" : [ "C20555T","C21772T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.287"}}, +"children":[ { +"name": "USA/NMDOH-2020135004/2020|MW006582.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "A6414G,A22101T,G24872T" }, +"mutations": { "nuc" : [ "A6414G","A22101T","G24872T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NMDOH-2020126568/2020|MW006567.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "C16428T" }, +"mutations": { "nuc" : [ "C16428T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "150", +"branch_attrs": { + "labels": { "nuc mutations": "G25523T,T27869C" }, +"mutations": { "nuc" : [ "G25523T","T27869C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.38"}}, +"children":[ { +"name": "USA/MN-MDH-1464/2020|MT919997.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "C3044T" }, +"mutations": { "nuc" : [ "C3044T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-2008/2020|MT326031.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "G4975T,T29194C" }, +"mutations": { "nuc" : [ "G4975T","T29194C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "151", +"branch_attrs": { + "labels": { "nuc mutations": "T20049C,C21627A,C23655T" }, +"mutations": { "nuc" : [ "T20049C","C21627A","C23655T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.515"}}, +"children":[ { +"name": "USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C11102T,A12174G" }, +"mutations": { "nuc" : [ "C11102T","A12174G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-03041/2020|MW053962.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C22295T,C22323T" }, +"mutations": { "nuc" : [ "C22295T","C22323T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "152", +"branch_attrs": { + "labels": { "nuc mutations": "C66T,C17069T,C26801T" }, +"mutations": { "nuc" : [ "C66T","C17069T","C26801T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.348"}}, +"children":[ { +"name": "USA/MD-MDH-0129/2020|MT937319.1|20-07-08", +"branch_attrs": { + "labels": { "nuc mutations": "C13761T" }, +"mutations": { "nuc" : [ "C13761T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1524/2020|MW349179.1|20-06-23", +"branch_attrs": { + "labels": { "nuc mutations": "A26864T" }, +"mutations": { "nuc" : [ "A26864T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "153", +"branch_attrs": { + "labels": { "nuc mutations": "C26625T" }, +"mutations": { "nuc" : [ "C26625T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.413"}}, +"children":[ { +"name": "USA/WA-UW-6327/2020|MT412324.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C5240G" }, +"mutations": { "nuc" : [ "C5240G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-3832/2020|MT358685.1|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "C3141A,C17766T" }, +"mutations": { "nuc" : [ "C3141A","C17766T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "154", +"branch_attrs": { + "labels": { "nuc mutations": "C27847T" }, +"mutations": { "nuc" : [ "C27847T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.360"}}, +"children":[ { +"name": "USA/MI-QDX-371/2020|MW064412.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "A2948G" }, +"mutations": { "nuc" : [ "A2948G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-QDX-298/2020|MW064340.1|20-03-21", +"branch_attrs": { + "labels": { "nuc mutations": "C6628T" }, +"mutations": { "nuc" : [ "C6628T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "155", +"branch_attrs": { + "labels": { "nuc mutations": "T8041C,G22225T" }, +"mutations": { "nuc" : [ "T8041C","G22225T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.366"}}, +"children":[ { +"name": "USA/TX-QDX-261/2020|MT806804.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C18029T" }, +"mutations": { "nuc" : [ "C18029T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NMDOH-2020174703/2020|MW070044.1|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "G26828A,C28005T" }, +"mutations": { "nuc" : [ "G26828A","C28005T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "156", +"branch_attrs": { + "labels": { "nuc mutations": "C335T,T16425G" }, +"mutations": { "nuc" : [ "C335T","T16425G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.363"}}, +"children":[ { +"name": "USA/WA-S2725/2020|MT947550.1|20-07-07", +"branch_attrs": { + "labels": { "nuc mutations": "G248T,T4138G,C9120T,A12197C,C15951T,G16425T,G22918T" }, +"mutations": { "nuc" : [ "G248T","T4138G","C9120T","A12197C","C15951T","G16425T","G22918T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0675/2020|MW093567.1|20-07-16", +"branch_attrs": { + "labels": { "nuc mutations": "G526C" }, +"mutations": { "nuc" : [ "G526C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "157", +"branch_attrs": { + "labels": { "nuc mutations": "T6905G,C13994T,C17518T,G21724T,G23120T,C25667T" }, +"mutations": { "nuc" : [ "T6905G","C13994T","C17518T","G21724T","G23120T","C25667T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.305"}}, +"children":[ { +"name": "USA/CA-CZB-10856/2020|MW276376.1|20-07-28", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C21058T,G21468T,G25681A,C27603T" }, +"mutations": { "nuc" : [ "C1912T","C21058T","G21468T","G25681A","C27603T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-994/2020|MT846680.1|20-07-20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "158", +"branch_attrs": { + "labels": { "nuc mutations": "C1968T,G29705T" }, +"mutations": { "nuc" : [ "C1968T","G29705T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.117"}}, +"children":[ { +"name": "England/BRIS-128CA3/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4586T,C29738T" }, +"mutations": { "nuc" : [ "C4586T","C29738T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12B1CF/2020|20-05-15", +"branch_attrs": { + "labels": { "nuc mutations": "C7843T,C9438T,T15254C,T16062C" }, +"mutations": { "nuc" : [ "C7843T","C9438T","T15254C","T16062C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "159", +"branch_attrs": { + "labels": { "nuc mutations": "G28808T,G29434C" }, +"mutations": { "nuc" : [ "G28808T","G29434C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.519"}}, +"children":[ { +"name": "England/BRIS-12C762/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "G10096A,G23755T,G24199T" }, +"mutations": { "nuc" : [ "G10096A","G23755T","G24199T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-127AD7/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "G3638T" }, +"mutations": { "nuc" : [ "G3638T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "160", +"branch_attrs": { + "labels": { "nuc mutations": "C5310T,C12294T,C25511T" }, +"mutations": { "nuc" : [ "C5310T","C12294T","C25511T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.304"}}, +"children":[ { +"name": "USA/WI-UW-491/2020|MT750074.1|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "C2003T,T22825C" }, +"mutations": { "nuc" : [ "C2003T","T22825C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-522/2020|MT750102.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "161", +"branch_attrs": { + "labels": { "nuc mutations": "C11919T" }, +"mutations": { "nuc" : [ "C11919T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.264"}}, +"children":[ { +"name": "USA/DC-HP00089/2020|MT509482.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C9510T" }, +"mutations": { "nuc" : [ "C9510T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-03817/2020|MT873871.1|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A13440G,C21998T" }, +"mutations": { "nuc" : [ "A13440G","C21998T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "162", +"branch_attrs": { + "labels": { "nuc mutations": "G1463A,G7557A,C8818T" }, +"mutations": { "nuc" : [ "G1463A","G7557A","C8818T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.330"}}, +"children":[ { +"name": "USA/MN-MDH-1643/2020|MW020074.1|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "C3264T,G21204T" }, +"mutations": { "nuc" : [ "C3264T","G21204T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1610/2020|MT997728.1|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "A20284G,C22477T,C23604T" }, +"mutations": { "nuc" : [ "A20284G","C22477T","C23604T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "163", +"branch_attrs": { + "labels": { "nuc mutations": "C5183T" }, +"mutations": { "nuc" : [ "C5183T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.313"}}, +"children":[ { +"name": "USA/IL-UW-1065/2020|MT929017.1|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "G28878T" }, +"mutations": { "nuc" : [ "G28878T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2335/2020|MW191073.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "A361G,C27596T" }, +"mutations": { "nuc" : [ "A361G","C27596T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "164", +"branch_attrs": { + "labels": { "nuc mutations": "C25976A" }, +"mutations": { "nuc" : [ "C25976A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.331"}}, +"children":[ { +"name": "USA/MI-QDX-620/2020|MW064645.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G3091A" }, +"mutations": { "nuc" : [ "G3091A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-QDX-595/2020|MW064630.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C18981T" }, +"mutations": { "nuc" : [ "C18981T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "165", +"branch_attrs": { + "labels": { "nuc mutations": "C7851T,C20233T" }, +"mutations": { "nuc" : [ "C7851T","C20233T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.165"}}, +"children":[ { +"name": "England/BRIS-12D9F2/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A20262G" }, +"mutations": { "nuc" : [ "A20262G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12B156/2020|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "A13707G" }, +"mutations": { "nuc" : [ "A13707G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "166", +"branch_attrs": { + "labels": { "nuc mutations": "C25572T" }, +"mutations": { "nuc" : [ "C25572T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.338"}}, +"children":[ { +"name": "USA/WA-QDX-2548/2020|MW191307.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "G29747T" }, +"mutations": { "nuc" : [ "G29747T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1161/2020|MT451779.1|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "C18744T,C29284T" }, +"mutations": { "nuc" : [ "C18744T","C29284T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-09"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "167", +"branch_attrs": { + "labels": { "nuc mutations": "C16762T" }, +"mutations": { "nuc" : [ "C16762T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.452"}}, +"children":[ { +"name": "USA/CA-CZB-2223/2020|MW035933.1|20-05-31", +"branch_attrs": { + "labels": { "nuc mutations": "G4105A,C4878T,G10759T,G18803T,A24478T,C29296T" }, +"mutations": { "nuc" : [ "G4105A","C4878T","G10759T","G18803T","A24478T","C29296T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-4063/2020|MW134429.1|20-08-04", +"branch_attrs": { + "labels": { "nuc mutations": "A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T" }, +"mutations": { "nuc" : [ "A964G","C2433T","C3602T","C19572T","G22112A","A24894C","G27583T","G29024T","C29095T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "168", +"branch_attrs": { + "labels": { "nuc mutations": "G29291A" }, +"mutations": { "nuc" : [ "G29291A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.321"}}, +"children":[ { +"name": "England/OXON-B15A5/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6627T,A11740T,G18984T,C24023T" }, +"mutations": { "nuc" : [ "C6627T","A11740T","G18984T","C24023T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-129D72/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C1593T,C10440T" }, +"mutations": { "nuc" : [ "C1593T","C10440T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "169", +"branch_attrs": { + "labels": { "nuc mutations": "A27821G" }, +"mutations": { "nuc" : [ "A27821G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.283"}}, +"children":[ { +"name": "USA/MN-MDH-1616/2020|MT997734.1|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "C2878T,G3146A" }, +"mutations": { "nuc" : [ "C2878T","G3146A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-CDC-6364/2020|MT967959.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "G7405T,G11113A,C12225T,G25437T,C25516T" }, +"mutations": { "nuc" : [ "G7405T","G11113A","C12225T","G25437T","C25516T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "170", +"branch_attrs": { + "labels": { "nuc mutations": "G2286A,A4197G,G7954T,A10552G,A28715T" }, +"mutations": { "nuc" : [ "G2286A","A4197G","G7954T","A10552G","A28715T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.340"}}, +"children":[ { +"name": "USA/VA-DCLS-1282/2020|MW067700.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T" }, +"mutations": { "nuc" : [ "C619T","A2286G","C2523T","G12892T","C13335T","C23053T","C23683T","C27845T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/COVID20-1144/2020|MW067817.1|20-07-10", +"branch_attrs": { + "labels": { "nuc mutations": "T25577G" }, +"mutations": { "nuc" : [ "T25577G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "171", +"branch_attrs": { + "labels": { "nuc mutations": "C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T" }, +"mutations": { "nuc" : [ "C823T","A2466G","C4084T","C6196T","G10753A","G11365A","C17145T","G27955A","C28854T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.444"}}, +"children":[ { +"name": "USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G26730T" }, +"mutations": { "nuc" : [ "G26730T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C5140T,G29290A" }, +"mutations": { "nuc" : [ "C5140T","G29290A" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "172", +"branch_attrs": { + "labels": { "nuc mutations": "C1887T" }, +"mutations": { "nuc" : [ "C1887T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.166"}}, +"children":[ { +"name": "USA/CA-QDX-2032/2020|MW190749.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G533A" }, +"mutations": { "nuc" : [ "G533A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2576/2020|MW191310.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "A27979T" }, +"mutations": { "nuc" : [ "A27979T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "173", +"branch_attrs": { + "labels": { "nuc mutations": "C829T,G28371T" }, +"mutations": { "nuc" : [ "C829T","G28371T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.120"}}, +"children":[ { +"name": "Wales/PHWC-1662B6/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A" }, +"mutations": { "nuc" : [ "G419A","G2281A","G3994A","C10956T","G11670A","C18508T","G27415A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-13"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-26B12/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-29"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "174", +"branch_attrs": { + "labels": { "nuc mutations": "C10851T" }, +"mutations": { "nuc" : [ "C10851T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.319"}}, +"children":[ { +"name": "USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09", +"branch_attrs": { + "labels": { "nuc mutations": "T3037C" }, +"mutations": { "nuc" : [ "T3037C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CT-UW-4372/2020|MT345874.1|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C3768T,C25584T" }, +"mutations": { "nuc" : [ "C3768T","C25584T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "175", +"branch_attrs": { + "labels": { "nuc mutations": "C5312T,G27852T" }, +"mutations": { "nuc" : [ "C5312T","G27852T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.167"}}, +"children":[ { +"name": "England/BRIS-12BF3E/2020|20-05-09", +"branch_attrs": { + "labels": { "nuc mutations": "G4960T,C6633T,T10732C,T20285G,C28005T" }, +"mutations": { "nuc" : [ "G4960T","C6633T","T10732C","T20285G","C28005T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12DF1E/2020|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "A5452G,C21846T,G28337A,G28378T" }, +"mutations": { "nuc" : [ "A5452G","C21846T","G28337A","G28378T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "176", +"branch_attrs": { + "labels": { "nuc mutations": "A8252G" }, +"mutations": { "nuc" : [ "A8252G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.267"}}, +"children":[ { +"name": "USA/CA-CZB-3630/2020|MW134171.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "C8637T,C9360T,G11540T,A23299G,G25311T,G29745T" }, +"mutations": { "nuc" : [ "C8637T","C9360T","G11540T","A23299G","G25311T","G29745T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "G15193A,C25626G" }, +"mutations": { "nuc" : [ "G15193A","C25626G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "177", +"branch_attrs": { + "labels": { "nuc mutations": "C1734T,C23664T" }, +"mutations": { "nuc" : [ "C1734T","C23664T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.487"}}, +"children":[ { +"name": "USA/TX-DSHS-1035/2020|MW228203.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "G840A,C19032T" }, +"mutations": { "nuc" : [ "G840A","C19032T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1428/2020|MW326536.1|20-06-23", +"branch_attrs": { + "labels": { "nuc mutations": "G12160T" }, +"mutations": { "nuc" : [ "G12160T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "178", +"branch_attrs": { + "labels": { "nuc mutations": "G1495T,T7332C,T7831A,G28845T" }, +"mutations": { "nuc" : [ "G1495T","T7332C","T7831A","G28845T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.355"}}, +"children":[ { +"name": "USA/TX-DSHS-0051/2020|MW039116.1|20-05-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1673/2020|MW406726.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "C9996T,C27498T,G28362C" }, +"mutations": { "nuc" : [ "C9996T","C27498T","G28362C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "179", +"branch_attrs": { + "labels": { "nuc mutations": "C28609T,G28621A,G28899T,C29171T,G29395A,G29628T" }, +"mutations": { "nuc" : [ "C28609T","G28621A","G28899T","C29171T","G29395A","G29628T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.516"}}, +"children":[ { +"name": "USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "C1060T,C2358T,C4543T,C9226T,C22227T,T24326C,T25510A,T29171C,G29511T" }, +"mutations": { "nuc" : [ "C1060T","C2358T","C4543T","C9226T","C22227T","T24326C","T25510A","T29171C","G29511T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1517/2020|MW197475.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "A10912G,C12733T" }, +"mutations": { "nuc" : [ "A10912G","C12733T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "180", +"branch_attrs": { + "labels": { "nuc mutations": "C475T,C5986T,A28389T" }, +"mutations": { "nuc" : [ "C475T","C5986T","A28389T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.337"}}, +"children":[ { +"name": "USA/WI-UW-1268/2020|MW035438.1|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "C9491T,C12754T,G15100T,C15154T,C20970T,C28657T" }, +"mutations": { "nuc" : [ "C9491T","C12754T","G15100T","C15154T","C20970T","C28657T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31", +"branch_attrs": { + "labels": { "nuc mutations": "C775T,C2488T" }, +"mutations": { "nuc" : [ "C775T","C2488T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "181", +"branch_attrs": { + "labels": { "nuc mutations": "G20709T" }, +"mutations": { "nuc" : [ "G20709T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.513"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-1021DD/2020|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "A6360G" }, +"mutations": { "nuc" : [ "A6360G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2429/2020|MW036038.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "C4002T,G17338T,A21080C,G22104T" }, +"mutations": { "nuc" : [ "C4002T","G17338T","A21080C","G22104T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "182", +"branch_attrs": { + "labels": { "nuc mutations": "G3231T,A12850G,C21364T,A23064C,C28890T" }, +"mutations": { "nuc" : [ "G3231T","A12850G","C21364T","A23064C","C28890T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.517"}}, +"children":[ { +"name": "USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30", +"branch_attrs": { + "labels": { "nuc mutations": "T16752G,C23064A" }, +"mutations": { "nuc" : [ "T16752G","C23064A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-12-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA-MGH-03346/2020|MW454682.1|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "C823T,A9397G,A23362T,G26654T,G29140A" }, +"mutations": { "nuc" : [ "C823T","A9397G","A23362T","G26654T","G29140A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-11-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "183", +"branch_attrs": { + "labels": { "nuc mutations": "G18213T,A18818G" }, +"mutations": { "nuc" : [ "G18213T","A18818G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.168"}}, +"children":[ { +"name": "Scotland/EDB6146/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "T7814C,C11339T,A21137G" }, +"mutations": { "nuc" : [ "T7814C","C11339T","A21137G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB6052/2020|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-08"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "184", +"branch_attrs": { + "labels": { "nuc mutations": "C9286T,G28899C" }, +"mutations": { "nuc" : [ "C9286T","G28899C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.312"}}, +"children":[ { +"name": "England/CAMB-7FBCF/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "A12556G" }, +"mutations": { "nuc" : [ "A12556G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-784BC/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "A13852G" }, +"mutations": { "nuc" : [ "A13852G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "185", +"branch_attrs": { + "labels": { "nuc mutations": "C25731T,C29625T" }, +"mutations": { "nuc" : [ "C25731T","C29625T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.512"}}, +"children":[ { +"name": "England/PHEC-15A73/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C7735T,C11757T,C18501T" }, +"mutations": { "nuc" : [ "C7735T","C11757T","C18501T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-796/2020|MW064788.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "C16329T,C23536T,G27906T" }, +"mutations": { "nuc" : [ "C16329T","C23536T","G27906T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "186", +"branch_attrs": { + "labels": { "nuc mutations": "C6406T,G18972A" }, +"mutations": { "nuc" : [ "C6406T","G18972A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.329"}}, +"children":[ { +"name": "B90|LR898037.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "A21360C" }, +"mutations": { "nuc" : [ "A21360C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "?"}, "country": {"value": "B90|LR898037.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "O9|LR963074.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "A1925C,C5796T" }, +"mutations": { "nuc" : [ "A1925C","C5796T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "?"}, "country": {"value": "O9|LR963074.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "187", +"branch_attrs": { + "labels": { "nuc mutations": "A24129G" }, +"mutations": { "nuc" : [ "A24129G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.315"}}, +"children":[ { +"name": "USA/TX-DSHS-1331/2020|MW322992.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G1325T,A6351C,C12741T" }, +"mutations": { "nuc" : [ "G1325T","A6351C","C12741T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-738/2020|MT772509.1|20-06-30", +"branch_attrs": { + "labels": { "nuc mutations": "T3049C,G4972A" }, +"mutations": { "nuc" : [ "T3049C","G4972A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "188", +"branch_attrs": { + "labels": { "nuc mutations": "C66T,A538G,T9107C" }, +"mutations": { "nuc" : [ "C66T","A538G","T9107C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.335"}}, +"children":[ { +"name": "USA/TX-DSHS-0596/2020|MW075691.1|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "T4324G,C23029T,T26543A,A28254G" }, +"mutations": { "nuc" : [ "T4324G","C23029T","T26543A","A28254G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0971/2020|MW217406.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "G23426C,A26070G" }, +"mutations": { "nuc" : [ "G23426C","A26070G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "189", +"branch_attrs": { + "labels": { "nuc mutations": "T4888A,G28727T" }, +"mutations": { "nuc" : [ "T4888A","G28727T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.492"}}, +"children":[ { +"name": "USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07", +"branch_attrs": { + "labels": { "nuc mutations": "T5674C,C8290T" }, +"mutations": { "nuc" : [ "T5674C","C8290T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18", +"branch_attrs": { + "labels": { "nuc mutations": "C466T,A17691G" }, +"mutations": { "nuc" : [ "C466T","A17691G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "190", +"branch_attrs": { + "labels": { "nuc mutations": "G7295T" }, +"mutations": { "nuc" : [ "G7295T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.115"}}, +"children":[ { +"name": "ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09", +"branch_attrs": { + "labels": { "nuc mutations": "C28290T" }, +"mutations": { "nuc" : [ "C28290T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-09"}, "country": {"value": "ISR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-946515/2020|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T" }, +"mutations": { "nuc" : [ "C4455T","C12784T","G21809A","T22150C","G23678T","G25523T","C27297T","G28001T","G28346T","G28917T","C29247T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "191", +"branch_attrs": { + "labels": { "nuc mutations": "C2416T" }, +"mutations": { "nuc" : [ "C2416T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "192", +"branch_attrs": { + "labels": { "nuc mutations": "G26233T,C27881T" }, +"mutations": { "nuc" : [ "G26233T","C27881T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.276"}}, +"children":[ { +"name": "USA/FL-BPHL-1462/2020|MW040672.1|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1813/2020|MW206463.1|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A16766G,T28250G,G28681A" }, +"mutations": { "nuc" : [ "A16766G","T28250G","G28681A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "193", +"branch_attrs": { + "labels": { "nuc mutations": "G8371T" }, +"mutations": { "nuc" : [ "G8371T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "194", +"branch_attrs": { + "labels": { "nuc mutations": "C2937T" }, +"mutations": { "nuc" : [ "C2937T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.281"}}, +"children":[ { +"name": "BHR/600023154_S29/2020|MW237743.1|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G" }, +"mutations": { "nuc" : [ "G1550A","G2494A","G7320A","G20247T","C23893T","C26645T","T27499C","T28120C","A28959G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-14"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BHR/920262933_S19_L001/2020|MW228054.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C21310A" }, +"mutations": { "nuc" : [ "C21310A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-19"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "195", +"branch_attrs": { + "labels": { "nuc mutations": "C22477T" }, +"mutations": { "nuc" : [ "C22477T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "196", +"branch_attrs": { + "labels": { "nuc mutations": "C882T,C17746T,G19962T,G28907T" }, +"mutations": { "nuc" : [ "C882T","C17746T","G19962T","G28907T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.282"}}, +"children":[ { +"name": "England/ALDP-955F15/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "G25793A" }, +"mutations": { "nuc" : [ "G25793A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9A6856/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "T2533C,T3873G,A8031G,G23126T,C26340T" }, +"mutations": { "nuc" : [ "T2533C","T3873G","A8031G","G23126T","C26340T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "197", +"branch_attrs": { + "labels": { "nuc mutations": "C3811T,G22225A" }, +"mutations": { "nuc" : [ "C3811T","G22225A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.477"}}, +"children":[ { +"name": "England/ALDP-94EB75/2020|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6E2806/2020|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "T16456G,C27769G" }, +"mutations": { "nuc" : [ "T16456G","C27769G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "198", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A" }, +"mutations": { "nuc" : [ "C9430T","A15477T","C18395T","A20622T","G20623T","A20624T","C23730T","A26319G","C28854T","G29044A" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.389"}}, +"children":[ { +"name": "Scotland/QEUH-969725/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2135T,G23856T" }, +"mutations": { "nuc" : [ "C2135T","G23856T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AD1648/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "C1514T,T6141A,C11490T,G13397T,C27577T" }, +"mutations": { "nuc" : [ "C1514T","T6141A","C11490T","G13397T","C27577T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "199", +"branch_attrs": { + "labels": { "nuc mutations": "T15366C" }, +"mutations": { "nuc" : [ "T15366C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.483"}}, +"children":[ { +"name": "USA/WI-UW-249/2020|MT706376.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C8016T,G28903T" }, +"mutations": { "nuc" : [ "C8016T","G28903T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-84/2020|MT706205.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "C18481T,G25687A,C29296T" }, +"mutations": { "nuc" : [ "C18481T","G25687A","C29296T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "200", +"branch_attrs": { + "labels": { "nuc mutations": "C10712T" }, +"mutations": { "nuc" : [ "C10712T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.37"}}, +"children":[ { +"name": "USA/VA-DCLS-0593/2020|MT951960.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "T25304C,C28890T" }, +"mutations": { "nuc" : [ "T25304C","C28890T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-CDC-3009/2020|MT512440.1|20-03-10", +"branch_attrs": { + "labels": { "nuc mutations": "T9708C" }, +"mutations": { "nuc" : [ "T9708C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "201", +"branch_attrs": { + "labels": { "nuc mutations": "C16616T,C26885T,C27603T,C28887T" }, +"mutations": { "nuc" : [ "C16616T","C26885T","C27603T","C28887T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.280"}}, +"children":[ { +"name": "USA/FL-BPHL-1673/2020|MW166138.1|20-07-06", +"branch_attrs": { + "labels": { "nuc mutations": "C7267T,A25201G,C29719T,C29774T" }, +"mutations": { "nuc" : [ "C7267T","A25201G","C29719T","C29774T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0286/2020|MW240750.1|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "A7209G,C8950T,T17262C,T22645C,T29010C" }, +"mutations": { "nuc" : [ "A7209G","C8950T","T17262C","T22645C","T29010C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "202", +"branch_attrs": { + "labels": { "nuc mutations": "C14786T,G20578T" }, +"mutations": { "nuc" : [ "C14786T","G20578T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.13"}}, +"children":[ { +"name": "England/PHEC-1C872/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C2453T,C11102T" }, +"mutations": { "nuc" : [ "C2453T","C11102T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-130015/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "C6361T" }, +"mutations": { "nuc" : [ "C6361T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "203", +"branch_attrs": { + "labels": { "nuc mutations": "A716G" }, +"mutations": { "nuc" : [ "A716G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.274"}}, +"children":[ { +"name": "USA/UT-04888/2020|MW084559.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "G4960T,G21604T" }, +"mutations": { "nuc" : [ "G4960T","G21604T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-04282/2020|MW084509.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C10456T,G19816T,G25494T" }, +"mutations": { "nuc" : [ "C10456T","G19816T","G25494T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "204", +"branch_attrs": { + "labels": { "nuc mutations": "G10631T" }, +"mutations": { "nuc" : [ "G10631T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.479"}}, +"children":[ { +"name": "USA/MA_MGH_00136/2020|MT520439.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00486/2020|MT520279.1|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "G8131T" }, +"mutations": { "nuc" : [ "G8131T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "205", +"branch_attrs": { + "labels": { "nuc mutations": "C19884T" }, +"mutations": { "nuc" : [ "C19884T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.277"}}, +"children":[ { +"name": "Wales/PHWC-15DFD9/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T" }, +"mutations": { "nuc" : [ "G3969A","G14785A","C14786T","C17000T","G18960T","C28657T","C29614T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-14"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2AF12/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C26447A" }, +"mutations": { "nuc" : [ "C26447A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-06"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "206", +"branch_attrs": { + "labels": { "nuc mutations": "C875T,A10904G,G25249T,C28854T" }, +"mutations": { "nuc" : [ "C875T","A10904G","G25249T","C28854T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.480"}}, +"children":[ { +"name": "England/CAMC-B533A0/2020|20-11-08", +"branch_attrs": { + "labels": { "nuc mutations": "C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C" }, +"mutations": { "nuc" : [ "C1191A","T6989C","C14230T","A18366G","C20429T","A22842T","G25785T","T27328C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9781E9/2020|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1150T,C6525T,C13274T,C18555T,G19962C,C24378T" }, +"mutations": { "nuc" : [ "C1150T","C6525T","C13274T","C18555T","G19962C","C24378T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "207", +"branch_attrs": { + "labels": { "nuc mutations": "C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T" }, +"mutations": { "nuc" : [ "C539T","C5884T","C7834T","G8618A","C14322T","C15579T","G16912T","C23604A","G23948T","C25207T","T26038C","C26600T","C27970A","C28887T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.474"}}, +"children":[ { +"name": "321398|LR962930.1|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C22208T" }, +"mutations": { "nuc" : [ "C22208T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-13"}, "country": {"value": "321398|LR962930.1|20-10-13"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-B8053B/2020|20-11-14", +"branch_attrs": { + "labels": { "nuc mutations": "G22225T" }, +"mutations": { "nuc" : [ "G22225T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "208", +"branch_attrs": { + "labels": { "nuc mutations": "C6401T,C13458T,C20946T" }, +"mutations": { "nuc" : [ "C6401T","C13458T","C20946T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.273"}}, +"children":[ { +"name": "IHUCOVID-0441|LR794655.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "T2578C,C13105T" }, +"mutations": { "nuc" : [ "T2578C","C13105T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0441|LR794655.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IHUCOVID-0428|LR794641.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "T10480C" }, +"mutations": { "nuc" : [ "T10480C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0428|LR794641.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "209", +"branch_attrs": { + "labels": { "nuc mutations": "T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G" }, +"mutations": { "nuc" : [ "T2300C","G5425T","C10594T","C10755T","C14120T","C14407T","G16647T","A19674G","A20396G","C21811T","C25544T","C28770T","C28869T","A29143G" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.158"}}, +"children":[ { +"name": "USA/WA-S4490/2021|MW648014.1|21-01-21", +"branch_attrs": { + "labels": { "nuc mutations": "T17607C,G20396A" }, +"mutations": { "nuc" : [ "T17607C","G20396A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "21-01-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S3458/2020|MW494078.1|20-12-07", +"branch_attrs": { + "labels": { "nuc mutations": "C3535T" }, +"mutations": { "nuc" : [ "C3535T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "210", +"branch_attrs": { + "labels": { "nuc mutations": "T17838C,G26450T" }, +"mutations": { "nuc" : [ "T17838C","G26450T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.481"}}, +"children":[ { +"name": "hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "?"}, "country": {"value": "hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100363/2020|LR884411.1|20-03-20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-20"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "211", +"branch_attrs": { + "labels": { "nuc mutations": "C18877T" }, +"mutations": { "nuc" : [ "C18877T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.440"}}, +"children":[ { +"name": "USA/FL-BPHL-0401/2020|MT757087.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "T18877C,C25904T" }, +"mutations": { "nuc" : [ "T18877C","C25904T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-14951/2020|MW565126.1|20-06-06", +"branch_attrs": { + "labels": { "nuc mutations": "T1683C,C22224T,C28367T" }, +"mutations": { "nuc" : [ "T1683C","C22224T","C28367T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "212", +"branch_attrs": { + "labels": { "nuc mutations": "C26735T" }, +"mutations": { "nuc" : [ "C26735T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "213", +"branch_attrs": { + "labels": { "nuc mutations": "C882T,C6990T" }, +"mutations": { "nuc" : [ "C882T","C6990T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.457"}}, +"children":[ { +"name": "England/CAMC-A3E658/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T" }, +"mutations": { "nuc" : [ "T3499C","C7279T","C7749T","C12513T","A14109G","C17156T","T20362C","C25710T","C26060T","T27216A","G28968T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A47DDF/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T" }, +"mutations": { "nuc" : [ "T511C","C7081T","C9907T","C12473T","T14610C","G20578T","G22801T","G28083T","C28887T","G28936T","G29742T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "214", +"branch_attrs": { + "labels": { "nuc mutations": "G24197T" }, +"mutations": { "nuc" : [ "G24197T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "215", +"branch_attrs": { + "labels": { "nuc mutations": "C21614T" }, +"mutations": { "nuc" : [ "C21614T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.466"}}, +"children":[ { +"name": "England/MILK-5642D2/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "T1834C,C11783A,C25413T" }, +"mutations": { "nuc" : [ "T1834C","C11783A","C25413T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1B3593/2020|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "A5829G,C6651T,C8326T,A11730G,T25732G" }, +"mutations": { "nuc" : [ "A5829G","C6651T","C8326T","A11730G","T25732G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "216", +"branch_attrs": { + "labels": { "nuc mutations": "T241C,A8821G,C15752T,T26066C" }, +"mutations": { "nuc" : [ "T241C","A8821G","C15752T","T26066C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.465"}}, +"children":[ { +"name": "England/SHEF-CDD62/2020|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C25665T,T28098C,G29254T" }, +"mutations": { "nuc" : [ "C25665T","T28098C","G29254T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-10B22B9/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "G3482A" }, +"mutations": { "nuc" : [ "G3482A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "217", +"branch_attrs": { + "labels": { "nuc mutations": "G1659T,C3884T,C20199T,C26139T,T27634C,G28975T" }, +"mutations": { "nuc" : [ "G1659T","C3884T","C20199T","C26139T","T27634C","G28975T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.523"}}, +"children":[ { +"name": "England/LOND-DC4E3/2020|20-11-04", +"branch_attrs": { + "labels": { "nuc mutations": "A11923G,G19009T,C20233T,T21976C,C26645T" }, +"mutations": { "nuc" : [ "A11923G","G19009T","C20233T","T21976C","C26645T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-99D3AC/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G6446T,C9811T,C21234A,C22713T,C29580T" }, +"mutations": { "nuc" : [ "G6446T","C9811T","C21234A","C22713T","C29580T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "218", +"branch_attrs": { + "labels": { "nuc mutations": "G28851T" }, +"mutations": { "nuc" : [ "G28851T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.454"}}, +"children":[ { +"name": "IND/GBRC-366a/2020|MT951170.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "C26058T" }, +"mutations": { "nuc" : [ "C26058T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-18"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC-392b/2020|MT954593.1|20-07-06", +"branch_attrs": { + "labels": { "nuc mutations": "C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T" }, +"mutations": { "nuc" : [ "C4048T","T4660C","C4890T","T8634C","G15906T","G28307A","G28975T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-06"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "219", +"branch_attrs": { + "labels": { "nuc mutations": "G5206T,C26885T,G28875T" }, +"mutations": { "nuc" : [ "G5206T","C26885T","G28875T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.467"}}, +"children":[ { +"name": "Switzerland/310517/2020|LR898824.1|20-10-08", +"branch_attrs": { + "labels": { "nuc mutations": "G370T,A8993G,C14763T,G25690A,C29370T" }, +"mutations": { "nuc" : [ "G370T","A8993G","C14763T","G25690A","C29370T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-08"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9AB1A1/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T" }, +"mutations": { "nuc" : [ "G5629T","C6636T","G9928T","G20275T","C20544A","G20940T","C25553T","C27431T","G28321T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "220", +"branch_attrs": { + "labels": { "nuc mutations": "C22444T" }, +"mutations": { "nuc" : [ "C22444T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.468"}}, +"children":[ { +"name": "SAU/596/2020|MT755893.1|20-02-18", +"branch_attrs": { + "labels": { "nuc mutations": "A23503G" }, +"mutations": { "nuc" : [ "A23503G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-02-18"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BHR/920265546_S18_L001/2020|MW228055.1|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T,G28960T" }, +"mutations": { "nuc" : [ "G11417T","G28960T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-21"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "221", +"branch_attrs": { + "labels": { "nuc mutations": "C593T,T3118C,T10200C,A12547G,C21772T,C28854T" }, +"mutations": { "nuc" : [ "C593T","T3118C","T10200C","A12547G","C21772T","C28854T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.20"}}, +"children":[ { +"name": "Scotland/QEUH-A9E7BD/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "A3120C" }, +"mutations": { "nuc" : [ "A3120C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-20"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB7778/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "C28045T" }, +"mutations": { "nuc" : [ "C28045T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-16"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "222", +"branch_attrs": { + "labels": { "nuc mutations": "T181C,C8664T,C12525T,C15120T,G28975T" }, +"mutations": { "nuc" : [ "T181C","C8664T","C12525T","C15120T","G28975T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.460"}}, +"children":[ { +"name": "England/ALDP-B75065/2020|20-11-12", +"branch_attrs": { + "labels": { "nuc mutations": "G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A" }, +"mutations": { "nuc" : [ "G3080A","C3587T","C8655T","C18555T","G22205C","G22487C","G27281T","G27420A","C28214A" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-AD4AFE/2020|20-10-27", +"branch_attrs": { + "labels": { "nuc mutations": "A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T" }, +"mutations": { "nuc" : [ "A3180G","C9430T","A12130G","G15193T","T20982C","C25904T","C26571T","G27165T","G28280T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-27"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "223", +"branch_attrs": { + "labels": { "nuc mutations": "C22444T,C28854T" }, +"mutations": { "nuc" : [ "C22444T","C28854T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36"}}, +"children":[ { +"name": "SAU/578/2020|MT755891.1|20-02-17", +"branch_attrs": { + "labels": { "nuc mutations": "C27527T,C29421T" }, +"mutations": { "nuc" : [ "C27527T","C29421T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-02-17"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB6640/2020|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "T838C,G1729A,C1973T,C2919T,C23191T,T23605C" }, +"mutations": { "nuc" : [ "T838C","G1729A","C1973T","C2919T","C23191T","T23605C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "224", +"branch_attrs": { + "labels": { "nuc mutations": "T1947C" }, +"mutations": { "nuc" : [ "T1947C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "225", +"branch_attrs": { + "labels": { "nuc mutations": "G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T" }, +"mutations": { "nuc" : [ "G2659T","G5008T","G19549T","G22918T","C25349A","G25947C","G26062T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.1"}}, +"children":[ { +"name": "England/CAMC-A65DDB/2020|20-10-11", +"branch_attrs": { + "labels": { "nuc mutations": "T22918G" }, +"mutations": { "nuc" : [ "T22918G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-AAF5A0/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C4672T,C8605T,C11003T" }, +"mutations": { "nuc" : [ "C4672T","C8605T","C11003T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "226", +"branch_attrs": { + "labels": { "nuc mutations": "T7292C,T8410C,C10833T,C11572T,C16293T,T23986C" }, +"mutations": { "nuc" : [ "T7292C","T8410C","C10833T","C11572T","C16293T","T23986C" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.28"}}, +"children":[ { +"name": "England/MILK-A192C8/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "A538G,A1098C,C2910T,G9092A" }, +"mutations": { "nuc" : [ "A538G","A1098C","C2910T","G9092A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9F3FDD/2020|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "227", +"branch_attrs": { + "labels": { "nuc mutations": "C7528T,C29555T" }, +"mutations": { "nuc" : [ "C7528T","C29555T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.17"}}, +"children":[ { +"name": "England/MILK-ABBF2B/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C10474T,C13536T" }, +"mutations": { "nuc" : [ "C10474T","C13536T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96A85E/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "T23986C" }, +"mutations": { "nuc" : [ "T23986C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "228", +"branch_attrs": { + "labels": { "nuc mutations": "G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T" }, +"mutations": { "nuc" : [ "G922A","G3431T","T5653C","G5950A","C7504T","T24175C","C26060T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.27"}}, +"children":[ { +"name": "HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "C14724T" }, +"mutations": { "nuc" : [ "C14724T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-06"}, "country": {"value": "HongKong"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "A6391G" }, +"mutations": { "nuc" : [ "A6391G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-06"}, "country": {"value": "HongKong"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "229", +"branch_attrs": { + "labels": { "nuc mutations": "C2836T,G21724T" }, +"mutations": { "nuc" : [ "C2836T","G21724T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "230", +"branch_attrs": { + "labels": { "nuc mutations": "C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T" }, +"mutations": { "nuc" : [ "C1122T","T2836C","T4057C","G6077T","A10323G","G13858T","C27092T","C27434T","G28975T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.21"}}, +"children":[ { +"name": "England/PHEC-149F0D/2020|20-11-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-11-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-BE717A/2020|20-11-29", +"branch_attrs": { + "labels": { "nuc mutations": "C11003T,C26404T,G26754A" }, +"mutations": { "nuc" : [ "C11003T","C26404T","G26754A" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-11-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "231", +"branch_attrs": { + "labels": { "nuc mutations": "G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T" }, +"mutations": { "nuc" : [ "G61T","C913T","C1541T","C11259T","C25000T","G26144A","G26849T","C29358T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.26"}}, +"children":[ { +"name": "CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04", +"branch_attrs": { + "labels": { "nuc mutations": "C9745T,C10440T" }, +"mutations": { "nuc" : [ "C9745T","C10440T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-04"}, "country": {"value": "CAN"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-BEAF22/2020|20-12-04", +"branch_attrs": { + "labels": { "nuc mutations": "G4105T,C4754T,C5730T,C21597T,T21841A" }, +"mutations": { "nuc" : [ "G4105T","C4754T","C5730T","C21597T","T21841A" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "232", +"branch_attrs": { + "labels": { "nuc mutations": "C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C" }, +"mutations": { "nuc" : [ "C6312T","C12513T","G14122T","A20559G","C23127T","T26876C","C28311T","A28900C" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.23"}}, +"children":[ { +"name": "England/QEUH-9B703C/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C25466A,C25614T,A29101G" }, +"mutations": { "nuc" : [ "C25466A","C25614T","A29101G" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-970CE0/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "G26389T" }, +"mutations": { "nuc" : [ "G26389T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "233", +"branch_attrs": { + "labels": { "nuc mutations": "G25494T" }, +"mutations": { "nuc" : [ "G25494T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.16"}}, +"children":[ { +"name": "BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C1593T,C2940T,C10456T,G23611A" }, +"mutations": { "nuc" : [ "C1593T","C2940T","C10456T","G23611A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-26"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "T15585A,C15613T,A24062G,T27484C" }, +"mutations": { "nuc" : [ "T15585A","C15613T","A24062G","T27484C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-14"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "234", +"branch_attrs": { + "labels": { "nuc mutations": "C2523T,G3994A,C5730T,C9924T,C11109T,C24138A" }, +"mutations": { "nuc" : [ "C2523T","G3994A","C5730T","C9924T","C11109T","C24138A" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.9"}}, +"children":[ { +"name": "England/CAMC-1263B05/2021|21-02-10", +"branch_attrs": { + "labels": { "nuc mutations": "G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A" }, +"mutations": { "nuc" : [ "G4300T","A5146G","T5347C","T6103C","A8133G","C11379T","G15543T","G19656A","T22345C","C27849T","G29212A" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-02-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AD3822/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "G2035T,A2805G,C18555T,C21365T" }, +"mutations": { "nuc" : [ "G2035T","A2805G","C18555T","C21365T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "235", +"branch_attrs": { + "labels": { "nuc mutations": "A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C" }, +"mutations": { "nuc" : [ "A749G","C2113T","C6268A","C6701T","C7318T","C9438T","C14724T","A17637G","C20555T","C21660A","G22201T","C22480A","G23522C","A25856C" ] } + }, +"node_attrs": { + "div":23, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.24"}}, +"children":[ { +"name": "England/SHEF-10C9BD2/2020|20-12-20", +"branch_attrs": { + "labels": { "nuc mutations": "C15081T,A19963G" }, +"mutations": { "nuc" : [ "C15081T","A19963G" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "20-12-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-10CC3AA/2020|20-12-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1420T" }, +"mutations": { "nuc" : [ "C1420T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "236", +"branch_attrs": { + "labels": { "nuc mutations": "C11514T,C13168T,G24764T" }, +"mutations": { "nuc" : [ "C11514T","C13168T","G24764T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.12"}}, +"children":[ { +"name": "England/MILK-9A94E6/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C7764T,C27059T,G27806T,C28087T" }, +"mutations": { "nuc" : [ "C7764T","C27059T","G27806T","C28087T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-566C5A/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "237", +"branch_attrs": { + "labels": { "nuc mutations": "C2898T,C6681T,C7728T,G12191T,T16993C,G25311T" }, +"mutations": { "nuc" : [ "C2898T","C6681T","C7728T","G12191T","T16993C","G25311T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.10"}}, +"children":[ { +"name": "England/CAMC-C2CDFC/2020|20-12-07", +"branch_attrs": { + "labels": { "nuc mutations": "T3366C" }, +"mutations": { "nuc" : [ "T3366C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-12-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-CAA0EE/2020|20-12-18", +"branch_attrs": { + "labels": { "nuc mutations": "C28411T" }, +"mutations": { "nuc" : [ "C28411T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-12-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "238", +"branch_attrs": { + "labels": { "nuc mutations": "C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A" }, +"mutations": { "nuc" : [ "C4543T","G9526T","C11497T","G15766T","A16889G","G17019T","G22992A","C25710T","T26876C","G28975C","G29399A" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.160"}}, +"children":[ { +"name": "England/PHEC-1491AD/2020|20-10-17", +"branch_attrs": { + "labels": { "nuc mutations": "G4006T,T18877C,T25563G" }, +"mutations": { "nuc" : [ "G4006T","T18877C","T25563G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "239", +"branch_attrs": { + "labels": { "nuc mutations": "G13993T" }, +"mutations": { "nuc" : [ "G13993T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-A1BC04/2020|20-10-03", +"branch_attrs": { + "labels": { "nuc mutations": "G204T,T961C,G6288T,T9651G,T13880C,C16163T,A22992G,C27263T,C28975G,A29399G" }, +"mutations": { "nuc" : [ "G204T","T961C","G6288T","T9651G","T13880C","C16163T","A22992G","C27263T","C28975G","A29399G" ] } + }, +"node_attrs": { "div": 29, "date": {"value": "20-10-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "240", +"branch_attrs": { + "labels": { "nuc mutations": "G5629T" }, +"mutations": { "nuc" : [ "G5629T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": "20A.EU2"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "241", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-97356A/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C15720T" }, +"mutations": { "nuc" : [ "C15720T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-08-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "242", +"branch_attrs": { + "labels": { "nuc mutations": "C556T,C23525T" }, +"mutations": { "nuc" : [ "C556T","C23525T" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.160.7"}}, +"children":[ { +"name": "England/CAMC-A649C9/2020|20-10-10", +"branch_attrs": { + "labels": { "nuc mutations": "C6813T,C13620T" }, +"mutations": { "nuc" : [ "C6813T","C13620T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-10-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B04890/2020|20-10-24", +"branch_attrs": { + "labels": { "nuc mutations": "G8371A,C23679T" }, +"mutations": { "nuc" : [ "G8371A","C23679T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-10-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/MILK-A230C1/2020|20-10-03", +"branch_attrs": { + "labels": { "nuc mutations": "A2175G" }, +"mutations": { "nuc" : [ "A2175G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "243", +"branch_attrs": { + "labels": { "nuc mutations": "C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T" }, +"mutations": { "nuc" : [ "C1427T","A2285T","G5329A","G7328T","C10369T","C12513T","C14120T","C17676T","C19955T","A20916G","G23593T","G26056T","A27107T","T27384C","C28760A","C29642T" ] } + }, +"node_attrs": { + "div":23, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.470"}}, +"children":[ { +"name": "England/TFCI-26FA9B7/2020|20-12-31", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B94ACC/2020|20-11-13", +"branch_attrs": { + "labels": { "nuc mutations": "C15237T" }, +"mutations": { "nuc" : [ "C15237T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-11-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "244", +"branch_attrs": { + "labels": { "nuc mutations": "T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T" }, +"mutations": { "nuc" : [ "T790C","A12075G","G19542T","G19816T","A21137G","C23604A","T25705C","C28866T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.469"}}, +"children":[ { +"name": "England/MILK-EB78C6/2021|21-01-02", +"branch_attrs": { + "labels": { "nuc mutations": "C6310T,C10369T" }, +"mutations": { "nuc" : [ "C6310T","C10369T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "21-01-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-C44338/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "T1908C,C2947T,C17550T,C29509T" }, +"mutations": { "nuc" : [ "T1908C","C2947T","C17550T","C29509T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "245", +"branch_attrs": { + "labels": { "nuc mutations": "C16915T,T24202C,G28899T" }, +"mutations": { "nuc" : [ "C16915T","T24202C","G28899T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "246", +"branch_attrs": { + "labels": { "nuc mutations": "G21204T,G29692T" }, +"mutations": { "nuc" : [ "G21204T","G29692T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.471"}}, +"children":[ { +"name": "England/QEUH-96A29C/2020|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "C15654T" }, +"mutations": { "nuc" : [ "C15654T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9EA6D4/2020|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "C8240T,C8357T" }, +"mutations": { "nuc" : [ "C8240T","C8357T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "247", +"branch_attrs": { + "labels": { "nuc mutations": "C26534T" }, +"mutations": { "nuc" : [ "C26534T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.472"}}, +"children":[ { +"name": "England/MILK-A6AEC4/2020|20-10-09", +"branch_attrs": { + "labels": { "nuc mutations": "C2910T,C16393T,A19387G,G20491A,C24378T" }, +"mutations": { "nuc" : [ "C2910T","C16393T","A19387G","G20491A","C24378T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B889A0/2020|20-11-14", +"branch_attrs": { + "labels": { "nuc mutations": "A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T" }, +"mutations": { "nuc" : [ "A169G","C5192T","C7224T","C8240T","C11962T","C18555T","C24916T","G25012T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-11-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "248", +"branch_attrs": { + "labels": { "nuc mutations": "C3811T,A6608G,A28911T" }, +"mutations": { "nuc" : [ "C3811T","A6608G","A28911T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.462"}}, +"children":[ { +"name": "England/ALDP-EEACDD/2021|21-01-03", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T" }, +"mutations": { "nuc" : [ "C1912T","C11758T","C19862T","C25511T","T25911G","G28027T","A29086T","G29402T","C29541T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "21-01-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LIVE-DDCD09/2021|21-01-02", +"branch_attrs": { + "labels": { "nuc mutations": "A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T" }, +"mutations": { "nuc" : [ "A901T","C1377T","A4414G","C6285T","A7483G","G7936T","C9430T","C15240T","C18183T","C21772T","G23593C","T25306C","G25740T","G26951T","C28087T","C28453T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "249", +"branch_attrs": { + "labels": { "nuc mutations": "G28086T" }, +"mutations": { "nuc" : [ "G28086T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.442"}}, +"children":[ { +"name": "USA/VA-DCLS-0229/2020|MT558657.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "C10582T,C11747T,G25459T,G25555T" }, +"mutations": { "nuc" : [ "C10582T","C11747T","G25459T","G25555T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C27416T" }, +"mutations": { "nuc" : [ "C27416T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "250", +"branch_attrs": { + "labels": { "nuc mutations": "T8296C,C12076T,G28690T,C28854T" }, +"mutations": { "nuc" : [ "T8296C","C12076T","G28690T","C28854T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.441"}}, +"children":[ { +"name": "Scotland/CVR3970/2020|20-08-22", +"branch_attrs": { + "labels": { "nuc mutations": "G19846A,G20060T,C22227T,G22332T" }, +"mutations": { "nuc" : [ "G19846A","G20060T","C22227T","G22332T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A7D5AB/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1929T,C3777T,G8102T,C26165T,C26681T,G28916A" }, +"mutations": { "nuc" : [ "C1929T","C3777T","G8102T","C26165T","C26681T","G28916A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "251", +"branch_attrs": { + "labels": { "nuc mutations": "A6512C" }, +"mutations": { "nuc" : [ "A6512C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.112"}}, +"children":[ { +"name": "USA/UT-01683/2020|MT536956.1|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "G370T,A3841T" }, +"mutations": { "nuc" : [ "G370T","A3841T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-03892/2020|MT711875.1|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C683T" }, +"mutations": { "nuc" : [ "C683T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "252", +"branch_attrs": { + "labels": { "nuc mutations": "G10793T" }, +"mutations": { "nuc" : [ "G10793T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.163"}}, +"children":[ { +"name": "USA/CA-CZB-1414/2020|MT628125.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C29311T" }, +"mutations": { "nuc" : [ "C29311T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11962/2020|MW276532.1|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "G21724T,G25186A" }, +"mutations": { "nuc" : [ "G21724T","G25186A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "253", +"branch_attrs": { + "labels": { "nuc mutations": "A2161G,C16376T" }, +"mutations": { "nuc" : [ "A2161G","C16376T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.124"}}, +"children":[ { +"name": "USA/WA-S1281/2020|MT821642.1|20-05-12", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T" }, +"mutations": { "nuc" : [ "G11417T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2367/2020|MT831837.1|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "C5758T,T18453C,A28901G" }, +"mutations": { "nuc" : [ "C5758T","T18453C","A28901G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "254", +"branch_attrs": { + "labels": { "nuc mutations": "T1918C,C6402T,C8320T,C12171T" }, +"mutations": { "nuc" : [ "T1918C","C6402T","C8320T","C12171T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.439"}}, +"children":[ { +"name": "USA/VA-DCLS-0804/2020|MT925987.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G28079T,G29540A" }, +"mutations": { "nuc" : [ "G28079T","G29540A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1454/2020|MW067779.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "G9190T,A11782G,G21893A,G26937A" }, +"mutations": { "nuc" : [ "G9190T","A11782G","G21893A","G26937A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "255", +"branch_attrs": { + "labels": { "nuc mutations": "C10507T" }, +"mutations": { "nuc" : [ "C10507T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.111"}}, +"children":[ { +"name": "England/NORW-E7EBA/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A476G,A16638G,G17893T" }, +"mutations": { "nuc" : [ "A476G","A16638G","G17893T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-1044/2020|MW065007.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1403T,G7798T" }, +"mutations": { "nuc" : [ "C1403T","G7798T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "256", +"branch_attrs": { + "labels": { "nuc mutations": "C9195T,T15354C" }, +"mutations": { "nuc" : [ "C9195T","T15354C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.162"}}, +"children":[ { +"name": "USA/WI-UW-413/2020|MT772562.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C5884T,T9195C" }, +"mutations": { "nuc" : [ "C5884T","T9195C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-288/2020|MT706396.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C21855T" }, +"mutations": { "nuc" : [ "C21855T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "257", +"branch_attrs": { + "labels": { "nuc mutations": "C1288T,G1298A,G25445T,G28851T,G29254T" }, +"mutations": { "nuc" : [ "C1288T","G1298A","G25445T","G28851T","G29254T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.385"}}, +"children":[ { +"name": "USA/GA-CDC-5095/2020|MW053297.1|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C7162T,G29745A" }, +"mutations": { "nuc" : [ "C7162T","G29745A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1097/2020|MT956684.1|20-08-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "258", +"branch_attrs": { + "labels": { "nuc mutations": "A1154G,G29474T" }, +"mutations": { "nuc" : [ "A1154G","G29474T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.438"}}, +"children":[ { +"name": "England/MILK-99DB3B/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "T5785A,G15705A,G25687T,G27598T" }, +"mutations": { "nuc" : [ "T5785A","G15705A","G25687T","G27598T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-5D3DEC/2020|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "259", +"branch_attrs": { + "labels": { "nuc mutations": "A1096G,G14874T" }, +"mutations": { "nuc" : [ "A1096G","G14874T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.245"}}, +"children":[ { +"name": "USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "C1420T" }, +"mutations": { "nuc" : [ "C1420T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "G15982T,G24914T" }, +"mutations": { "nuc" : [ "G15982T","G24914T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "260", +"branch_attrs": { + "labels": { "nuc mutations": "C2113T,C7765T,C17690T" }, +"mutations": { "nuc" : [ "C2113T","C7765T","C17690T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "261", +"branch_attrs": { + "labels": { "nuc mutations": "T2113C,G9190T,G28851C" }, +"mutations": { "nuc" : [ "T2113C","G9190T","G28851C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.5"}}, +"children":[ { +"name": "England/MILK-ACEE55/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T" }, +"mutations": { "nuc" : [ "C1812T","G22992T","T23599A","C24844T","G25687T","G28307T","C28708T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/260079/2020|LR882418.1|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "C842T,T1359C,C10702T,C11109T,C25886T,C27429T" }, +"mutations": { "nuc" : [ "C842T","T1359C","C10702T","C11109T","C25886T","C27429T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-25"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "262", +"branch_attrs": { + "labels": { "nuc mutations": "T24923C" }, +"mutations": { "nuc" : [ "T24923C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.1"}}, +"children":[ { +"name": "Scotland/EDB6391/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C12194T,C13968T,C14189T" }, +"mutations": { "nuc" : [ "C12194T","C13968T","C14189T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB5108/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "263", +"branch_attrs": { + "labels": { "nuc mutations": "T5941C,A22438T" }, +"mutations": { "nuc" : [ "T5941C","A22438T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.2"}}, +"children":[ { +"name": "USA/VA-DCLS-0489/2020|MT951943.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "G21600T,T27672C" }, +"mutations": { "nuc" : [ "G21600T","T27672C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1388/2020|MW067734.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G1659A,A4838G,C5548T,C14220T,C14724T" }, +"mutations": { "nuc" : [ "G1659A","A4838G","C5548T","C14220T","C14724T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "264", +"branch_attrs": { + "labels": { "nuc mutations": "C346T,A28959G" }, +"mutations": { "nuc" : [ "C346T","A28959G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.4"}}, +"children":[ { +"name": "Scotland/QEUH-961BB8/2020|20-08-02", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T,G23782T,A28336G" }, +"mutations": { "nuc" : [ "C9430T","G23782T","A28336G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-02"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/250091/2020|LR881897.1|20-08-19", +"branch_attrs": { + "labels": { "nuc mutations": "G11521T,T16059C,C23896T,T25078C,T27919C" }, +"mutations": { "nuc" : [ "G11521T","T16059C","C23896T","T25078C","T27919C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-19"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "265", +"branch_attrs": { + "labels": { "nuc mutations": "A25524G,C26801T,G29449T" }, +"mutations": { "nuc" : [ "A25524G","C26801T","G29449T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.436"}}, +"children":[ { +"name": "USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "C10741T" }, +"mutations": { "nuc" : [ "C10741T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "266", +"branch_attrs": { + "labels": { "nuc mutations": "A11246T,A23949G,C29013T" }, +"mutations": { "nuc" : [ "A11246T","A23949G","C29013T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.443"}}, +"children":[ { +"name": "USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C9967T" }, +"mutations": { "nuc" : [ "C9967T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-QDX-3305/2020|MW522496.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "C5392T,C18654T,C19983T,G25177T" }, +"mutations": { "nuc" : [ "C5392T","C18654T","C19983T","G25177T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "267", +"branch_attrs": { + "labels": { "nuc mutations": "T3011C,G22205T,T27869C,T28853G" }, +"mutations": { "nuc" : [ "T3011C","G22205T","T27869C","T28853G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.216"}}, +"children":[ { +"name": "USA/WI-UW-1105/2020|MT929055.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C1824T,C19718T,C25919T,C29149T" }, +"mutations": { "nuc" : [ "C1824T","C19718T","C25919T","C29149T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/RML-22/2020|MW221270.1|20-08-30", +"branch_attrs": { + "labels": { "nuc mutations": "T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T" }, +"mutations": { "nuc" : [ "T1847C","T5119C","C5585A","C6449T","C13059T","C18928T","C26256T","G28079T","G29755T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "268", +"branch_attrs": { + "labels": { "nuc mutations": "C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T" }, +"mutations": { "nuc" : [ "C3602T","C6941T","C15324T","C21855T","A25505G","G25906C","G25996T","C28651T","C28869T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.221"}}, +"children":[ { +"name": "England/MILK-9750EF/2020|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "G2407C,C2902T" }, +"mutations": { "nuc" : [ "G2407C","C2902T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "269", +"branch_attrs": { + "labels": { "nuc mutations": "G4442T,C6525T,A16044T" }, +"mutations": { "nuc" : [ "G4442T","C6525T","A16044T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.221.1"}}, +"children":[ { +"name": "270", +"branch_attrs": { + "labels": { "nuc mutations": "G2407T,G11761T" }, +"mutations": { "nuc" : [ "G2407T","G11761T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-9C3D45/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C11494T,C20468T" }, +"mutations": { "nuc" : [ "C11494T","C20468T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9C7EA8/2020|20-09-11", +"branch_attrs": { + "labels": { "nuc mutations": "T2924C" }, +"mutations": { "nuc" : [ "T2924C" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/MILK-9A8AB8/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C222T" }, +"mutations": { "nuc" : [ "C222T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "271", +"branch_attrs": { + "labels": { "nuc mutations": "G4504T,T8983G,G11761T,T12655C,C26461T,A28133T" }, +"mutations": { "nuc" : [ "G4504T","T8983G","G11761T","T12655C","C26461T","A28133T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.221.2"}}, +"children":[ { +"name": "England/CAMC-106415F/2021|21-01-15", +"branch_attrs": { + "labels": { "nuc mutations": "C12116T,C12459T,A23503T,A23989T,C24023T,G28899A" }, +"mutations": { "nuc" : [ "C12116T","C12459T","A23503T","A23989T","C24023T","G28899A" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "21-01-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-C470F2/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "C6794T,C8814T,C13452T" }, +"mutations": { "nuc" : [ "C6794T","C8814T","C13452T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "272", +"branch_attrs": { + "labels": { "nuc mutations": "C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T" }, +"mutations": { "nuc" : [ "C1498T","G2659A","C6285T","T8593C","C14407T","C18171T","A20724G","A21717G","C21762T","G23012A","G23593C","T24224C","C24748T","C26305T","T26767C","C28308G","A28699G","C28887T","G29543T" ] } + }, +"node_attrs": { + "div":23, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.525"}}, +"children":[ { +"name": "BHR/740704818/2021|MW661071.1|21-01-26", +"branch_attrs": { + "labels": { "nuc mutations": "C1593T,T16138C,C25667T" }, +"mutations": { "nuc" : [ "C1593T","T16138C","C25667T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-26"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-E93C6A/2021|21-01-04", +"branch_attrs": { + "labels": { "nuc mutations": "A1807G,C9565T,G18670A,C22480T,T23176C,G27916T" }, +"mutations": { "nuc" : [ "A1807G","C9565T","G18670A","C22480T","T23176C","G27916T" ] } + }, +"node_attrs": { "div": 29, "date": {"value": "21-01-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "273", +"branch_attrs": { + "labels": { "nuc mutations": "C1545T,C22879A" }, +"mutations": { "nuc" : [ "C1545T","C22879A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.222"}}, +"children":[ { +"name": "Scotland/CVR2931/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "T1545C,C8334T,C19089T" }, +"mutations": { "nuc" : [ "T1545C","C8334T","C19089T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/GCVR-172150/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-30"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "274", +"branch_attrs": { + "labels": { "nuc mutations": "A11782G,G22203T" }, +"mutations": { "nuc" : [ "A11782G","G22203T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.379"}}, +"children":[ { +"name": "England/BRIS-124885/2020|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "T2815C,T6892C" }, +"mutations": { "nuc" : [ "T2815C","T6892C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-122C4F/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G27754T" }, +"mutations": { "nuc" : [ "G27754T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "275", +"branch_attrs": { + "labels": { "nuc mutations": "A20268G" }, +"mutations": { "nuc" : [ "A20268G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.182"}}, +"children":[ { +"name": "USA/RI-CDC-0556/2020|MT304488.1|20-03-01", +"branch_attrs": { + "labels": { "nuc mutations": "C27684T" }, +"mutations": { "nuc" : [ "C27684T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100198/2020|LR884312.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G28881A" }, +"mutations": { "nuc" : [ "G28881A" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-17"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "276", +"branch_attrs": { + "labels": { "nuc mutations": "G15732T,T19143C" }, +"mutations": { "nuc" : [ "G15732T","T19143C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.415"}}, +"children":[ { +"name": "USA/WI-UW-1046/2020|MT928999.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T" }, +"mutations": { "nuc" : [ "G2549A","C9448T","C10815T","A13712G","C14599T","C19806T","C29614T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0409/2020|MW127871.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T" }, +"mutations": { "nuc" : [ "G669T","C3096T","A11714G","C20823T","C22286T","A24014G","G29332T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "277", +"branch_attrs": { + "labels": { "nuc mutations": "C28854T" }, +"mutations": { "nuc" : [ "C28854T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "278", +"branch_attrs": { + "labels": { "nuc mutations": "G27987T" }, +"mutations": { "nuc" : [ "G27987T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.232"}}, +"children":[ { +"name": "Scotland/EDB3341/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-08"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB6880/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "G6461T,C17550T,C24865T" }, +"mutations": { "nuc" : [ "G6461T","C17550T","C24865T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-30"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "279", +"branch_attrs": { + "labels": { "nuc mutations": "T24076C" }, +"mutations": { "nuc" : [ "T24076C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.243"}}, +"children":[ { +"name": "USA/CA-CDC-4728/2020|MW001919.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "G7393T,C27804T" }, +"mutations": { "nuc" : [ "G7393T","C27804T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "C390T,A9984C,A15250G,G15253A,G18412T" }, +"mutations": { "nuc" : [ "C390T","A9984C","A15250G","G15253A","G18412T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "280", +"branch_attrs": { + "labels": { "nuc mutations": "C18486T,T22162C" }, +"mutations": { "nuc" : [ "C18486T","T22162C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.240"}}, +"children":[ { +"name": "England/ALDP-B252AA/2020|20-11-04", +"branch_attrs": { + "labels": { "nuc mutations": "C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T" }, +"mutations": { "nuc" : [ "C147T","C934T","C2536T","G3496T","C4331T","C6738T","A13712G","T14769C","G17790T","C20259T","G21753T","C27903T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-11-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11549/2020|MW276537.1|20-07-12", +"branch_attrs": { + "labels": { "nuc mutations": "C4898T,A11934T,G23868T" }, +"mutations": { "nuc" : [ "C4898T","A11934T","G23868T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "281", +"branch_attrs": { + "labels": { "nuc mutations": "G16741A" }, +"mutations": { "nuc" : [ "G16741A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.239"}}, +"children":[ { +"name": "USA/CA-CZB-11793/2020|MW276612.1|20-09-22", +"branch_attrs": { + "labels": { "nuc mutations": "G3259T,C7720T,G11146T,G22992T,G24781T,C25584T" }, +"mutations": { "nuc" : [ "G3259T","C7720T","G11146T","G22992T","G24781T","C25584T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2502/2020|MW035993.1|20-05-25", +"branch_attrs": { + "labels": { "nuc mutations": "C1060T,C8334T,T21000C" }, +"mutations": { "nuc" : [ "C1060T","C8334T","T21000C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "282", +"branch_attrs": { + "labels": { "nuc mutations": "C4633T,T14643C,C22482T" }, +"mutations": { "nuc" : [ "C4633T","T14643C","C22482T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.402"}}, +"children":[ { +"name": "USA/CA-CZB-11521/2020|MW276549.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "G27506T" }, +"mutations": { "nuc" : [ "G27506T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11513/2020|MW276567.1|20-08-02", +"branch_attrs": { + "labels": { "nuc mutations": "G23126T,G25775T" }, +"mutations": { "nuc" : [ "G23126T","G25775T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "283", +"branch_attrs": { + "labels": { "nuc mutations": "G1135T" }, +"mutations": { "nuc" : [ "G1135T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.397"}}, +"children":[ { +"name": "USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "G1148T,G28109T" }, +"mutations": { "nuc" : [ "G1148T","G28109T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0227/2020|MW157244.1|20-09-23", +"branch_attrs": { + "labels": { "nuc mutations": "G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T" }, +"mutations": { "nuc" : [ "G199T","C1288T","C3096T","A3867T","C8208T","C10641T","C21952T","A25050T","C28310T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "284", +"branch_attrs": { + "labels": { "nuc mutations": "G7798T" }, +"mutations": { "nuc" : [ "G7798T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.229"}}, +"children":[ { +"name": "England/LOND-D5444/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C12789T" }, +"mutations": { "nuc" : [ "C12789T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3238/2020|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "G22992T" }, +"mutations": { "nuc" : [ "G22992T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-26"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "285", +"branch_attrs": { + "labels": { "nuc mutations": "G19969A" }, +"mutations": { "nuc" : [ "G19969A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.400"}}, +"children":[ { +"name": "USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T" }, +"mutations": { "nuc" : [ "C1627T","C9430T","C14925T","C24031T","G28001C","T28251G","A28254C","C28744T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3893/2020|MW134296.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "A4143G,C6627T,C15960T,T19341C,A27834T,C28724T" }, +"mutations": { "nuc" : [ "A4143G","C6627T","C15960T","T19341C","A27834T","C28724T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "286", +"branch_attrs": { + "labels": { "nuc mutations": "C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T" }, +"mutations": { "nuc" : [ "C593T","C2445T","C5301T","C5365T","A6391G","A10399G","G11266A","C22120T","G28086T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.421"}}, +"children":[ { +"name": "USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22", +"branch_attrs": { + "labels": { "nuc mutations": "C16362T" }, +"mutations": { "nuc" : [ "C16362T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "G25775T" }, +"mutations": { "nuc" : [ "G25775T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "287", +"branch_attrs": { + "labels": { "nuc mutations": "T5507A" }, +"mutations": { "nuc" : [ "T5507A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.235"}}, +"children":[ { +"name": "Scotland/EDB3662/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "A19855G" }, +"mutations": { "nuc" : [ "A19855G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6FB8FB/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C335T,C9024T,G15906T,C21614T" }, +"mutations": { "nuc" : [ "C335T","C9024T","G15906T","C21614T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "288", +"branch_attrs": { + "labels": { "nuc mutations": "C4596A,G19086T" }, +"mutations": { "nuc" : [ "C4596A","G19086T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.403"}}, +"children":[ { +"name": "USA/CA-CDC-4704/2020|MW001903.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C23114T" }, +"mutations": { "nuc" : [ "C23114T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-4000/2020|MW134394.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "G9111A,C13517T,C17639T,A20649T" }, +"mutations": { "nuc" : [ "G9111A","C13517T","C17639T","A20649T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "289", +"branch_attrs": { + "labels": { "nuc mutations": "C8683T" }, +"mutations": { "nuc" : [ "C8683T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.238"}}, +"children":[ { +"name": "England/LIVE-A00F3/2020|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C6336T,C12672T,C13335T,G26173T" }, +"mutations": { "nuc" : [ "C6336T","C12672T","C13335T","G26173T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-544733/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C7564T,C12400T" }, +"mutations": { "nuc" : [ "C7564T","C12400T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "290", +"branch_attrs": { + "labels": { "nuc mutations": "C11575T" }, +"mutations": { "nuc" : [ "C11575T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.241"}}, +"children":[ { +"name": "USA/TX-DSHS-1179/2020|MW246020.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "G6884A,C13487T,A16840C,C19029T,T22222C,C28115T" }, +"mutations": { "nuc" : [ "G6884A","C13487T","A16840C","C19029T","T22222C","C28115T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-2008/2020|MW279332.1|20-09-29", +"branch_attrs": { + "labels": { "nuc mutations": "A1291G,A2342G,A7291G,T7645C,C7768T" }, +"mutations": { "nuc" : [ "A1291G","A2342G","A7291G","T7645C","C7768T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "291", +"branch_attrs": { + "labels": { "nuc mutations": "C1714T" }, +"mutations": { "nuc" : [ "C1714T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.231"}}, +"children":[ { +"name": "England/MILK-654007/2020|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C" }, +"mutations": { "nuc" : [ "C841T","C2048T","T5092C","C5724T","C8092T","A13516G","G18816T","G19999T","C20451T","A27675C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/OXON-B1781/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "C27213T" }, +"mutations": { "nuc" : [ "C27213T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "292", +"branch_attrs": { + "labels": { "nuc mutations": "C28887T" }, +"mutations": { "nuc" : [ "C28887T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.399"}}, +"children":[ { +"name": "USA/CA-CZB-3624/2020|MW134177.1|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "G1843A,C3828T,C12880T,C19386T,G25252T" }, +"mutations": { "nuc" : [ "G1843A","C3828T","C12880T","C19386T","G25252T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-4040/2020|MW134375.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T" }, +"mutations": { "nuc" : [ "C2462T","G3994T","A18174G","G19086T","A19815G","A26105G","C26395T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "293", +"branch_attrs": { + "labels": { "nuc mutations": "G208T" }, +"mutations": { "nuc" : [ "G208T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "294", +"branch_attrs": { + "labels": { "nuc mutations": "T2845C" }, +"mutations": { "nuc" : [ "T2845C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.401"}}, +"children":[ { +"name": "USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "C6500T,C17125T,C21145T,C29708T" }, +"mutations": { "nuc" : [ "C6500T","C17125T","C21145T","C29708T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-2857/2020|MW566820.1|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "G9805T,G11273A,G17944T" }, +"mutations": { "nuc" : [ "G9805T","G11273A","G17944T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-09-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "295", +"branch_attrs": { + "labels": { "nuc mutations": "G23522A" }, +"mutations": { "nuc" : [ "G23522A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.405"}}, +"children":[ { +"name": "USA/CA-CZB-3903/2020|MW134295.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C24106T,C25162A,C25163A,A26927G" }, +"mutations": { "nuc" : [ "C24106T","C25162A","C25163A","A26927G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "A25747C" }, +"mutations": { "nuc" : [ "A25747C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "296", +"branch_attrs": { + "labels": { "nuc mutations": "G11842A,A12759G,G18292T" }, +"mutations": { "nuc" : [ "G11842A","A12759G","G18292T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.236"}}, +"children":[ { +"name": "Switzerland/220021/2020|LR882232.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "A2679G,C11767T" }, +"mutations": { "nuc" : [ "A2679G","C11767T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-27"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96E08F/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "G11230T,G13459T,G26450T" }, +"mutations": { "nuc" : [ "G11230T","G13459T","G26450T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "297", +"branch_attrs": { + "labels": { "nuc mutations": "A8884G,C16694A,C26177T" }, +"mutations": { "nuc" : [ "A8884G","C16694A","C26177T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.447"}}, +"children":[ { +"name": "USA/TX-DSHS-0945/2020|MW190134.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "C24258T" }, +"mutations": { "nuc" : [ "C24258T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1150/2020|MW252120.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "298", +"branch_attrs": { + "labels": { "nuc mutations": "G25049T" }, +"mutations": { "nuc" : [ "G25049T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.406"}}, +"children":[ { +"name": "England/MILK-977645/2020|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C3695T,C18744T" }, +"mutations": { "nuc" : [ "C3695T","C18744T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B325A1/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "G5504A,T25570C,C27303A,C28697T" }, +"mutations": { "nuc" : [ "G5504A","T25570C","C27303A","C28697T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "299", +"branch_attrs": { + "labels": { "nuc mutations": "C29200T,C29451T" }, +"mutations": { "nuc" : [ "C29200T","C29451T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.408"}}, +"children":[ { +"name": "England/CAMC-B34141/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T" }, +"mutations": { "nuc" : [ "G2995T","G3638T","C5833T","C15763T","C18981T","C19160T","A21352C","G21641T","A23998G","G26217T","C26645T","G28083T","G29751T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A795AF/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T" }, +"mutations": { "nuc" : [ "C643T","C3261T","G8264T","C8950T","A9650G","G11310A","A23947G","A24369T","A27256G","C27847T","C28348T","C29535T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "300", +"branch_attrs": { + "labels": { "nuc mutations": "A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T" }, +"mutations": { "nuc" : [ "A5877G","G8017T","C11008T","C20283T","C25714T","G25855T","C27434T","C27998T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.409"}}, +"children":[ { +"name": "USA/MD-MDH-0853/2021|MW621444.1|21-01-20", +"branch_attrs": { + "labels": { "nuc mutations": "C3397T,C18591T" }, +"mutations": { "nuc" : [ "C3397T","C18591T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "21-01-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-14F392/2020|20-12-24", +"branch_attrs": { + "labels": { "nuc mutations": "G3527A,T11008C,C13059T,A26594T" }, +"mutations": { "nuc" : [ "G3527A","T11008C","C13059T","A26594T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-12-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "301", +"branch_attrs": { + "labels": { "nuc mutations": "C1191T,C9521A,G29422T,A29567G" }, +"mutations": { "nuc" : [ "C1191T","C9521A","G29422T","A29567G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.396"}}, +"children":[ { +"name": "USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29", +"branch_attrs": { + "labels": { "nuc mutations": "C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T" }, +"mutations": { "nuc" : [ "C2037T","A2271G","G6566T","C7945T","C9246T","C10116T","C10128T","C11620T","C13554T","G19648T","C23053T","G23441A","G26062T","G26113C","C26801T","G28851T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1114/2020|MW228282.1|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "C24904T,A26986T" }, +"mutations": { "nuc" : [ "C24904T","A26986T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "302", +"branch_attrs": { + "labels": { "nuc mutations": "G2258A,A6441G,C8140T,A9204G,C29445T" }, +"mutations": { "nuc" : [ "G2258A","A6441G","C8140T","A9204G","C29445T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.234"}}, +"children":[ { +"name": "USA/WI-UW-1288/2020|MW035458.1|20-09-02", +"branch_attrs": { + "labels": { "nuc mutations": "C884T" }, +"mutations": { "nuc" : [ "C884T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2808/2020|MW077495.1|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "A19137T,C19366T,G29384T" }, +"mutations": { "nuc" : [ "A19137T","C19366T","G29384T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "303", +"branch_attrs": { + "labels": { "nuc mutations": "C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T" }, +"mutations": { "nuc" : [ "C832T","C2252A","G11243T","T18723C","G25720T","C27532T","C29085T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.407"}}, +"children":[ { +"name": "England/CAMC-94C02D/2020|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C27371T" }, +"mutations": { "nuc" : [ "C27371T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-95DBDD/2020|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "A20667G" }, +"mutations": { "nuc" : [ "A20667G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "304", +"branch_attrs": { + "labels": { "nuc mutations": "G15438T" }, +"mutations": { "nuc" : [ "G15438T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.223"}}, +"children":[ { +"name": "Scotland/CVR3054/2020|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "T6673C,C28887T" }, +"mutations": { "nuc" : [ "T6673C","C28887T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-24"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-95698F/2020|20-06-06", +"branch_attrs": { + "labels": { "nuc mutations": "G3340T,T7258C,T8941C,G12911A" }, +"mutations": { "nuc" : [ "G3340T","T7258C","T8941C","G12911A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "305", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G,C28854T" }, +"mutations": { "nuc" : [ "A10323G","C28854T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.404"}}, +"children":[ { +"name": "306", +"branch_attrs": { + "labels": { "nuc mutations": "G21778A,T28854C" }, +"mutations": { "nuc" : [ "G21778A","T28854C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.419"}}, +"children":[ { +"name": "England/CAMB-79ECC/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-224A2/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "C9979T,G21853T,G29195T,C29272T" }, +"mutations": { "nuc" : [ "C9979T","G21853T","G29195T","C29272T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09", +"branch_attrs": { + "labels": { "nuc mutations": "C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A" }, +"mutations": { "nuc" : [ "C1943T","G5572T","G7042T","G11417T","T16743C","G19086T","G22992A","C24621T","G25311T","C28697T","G28907A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "21-01-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "307", +"branch_attrs": { + "labels": { "nuc mutations": "C2143T,C29370G" }, +"mutations": { "nuc" : [ "C2143T","C29370G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.181"}}, +"children":[ { +"name": "USA/AK-PHL414/2020|MT946886.1|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "G26062T,C29119T" }, +"mutations": { "nuc" : [ "G26062T","C29119T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/AK-PHL689/2020|MW173160.1|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6336T,G16853T,A21794G,G21800T,G25244T" }, +"mutations": { "nuc" : [ "C6336T","G16853T","A21794G","G21800T","G25244T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "308", +"branch_attrs": { + "labels": { "nuc mutations": "C28833T" }, +"mutations": { "nuc" : [ "C28833T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.416"}}, +"children":[ { +"name": "England/MILK-974596/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1625T,C19170T,A20829G,A25255G,C26469T,G27666T" }, +"mutations": { "nuc" : [ "C1625T","C19170T","A20829G","A25255G","C26469T","G27666T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "309", +"branch_attrs": { + "labels": { "nuc mutations": "C25731T,G28703C" }, +"mutations": { "nuc" : [ "C25731T","G28703C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Switzerland/310363/2020|LR898676.1|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "G542A,A4372C,C10277T,G14268A,G29747T" }, +"mutations": { "nuc" : [ "G542A","A4372C","C10277T","G14268A","G29747T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-07"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "310", +"branch_attrs": { + "labels": { "nuc mutations": "C2706T,C28703G" }, +"mutations": { "nuc" : [ "C2706T","C28703G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.416.1"}}, +"children":[ { +"name": "Switzerland/300264/2020|LR898541.1|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "C2470T,C4084T" }, +"mutations": { "nuc" : [ "C2470T","C4084T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-01"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-963433/2020|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "C5339T" }, +"mutations": { "nuc" : [ "C5339T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "311", +"branch_attrs": { + "labels": { "nuc mutations": "C12915T,G21255T" }, +"mutations": { "nuc" : [ "C12915T","G21255T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.225"}}, +"children":[ { +"name": "England/NORW-ECD21/2020|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1684T,C6593T,G14829T,C23525T,G29744A" }, +"mutations": { "nuc" : [ "C1684T","C6593T","G14829T","C23525T","G29744A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-E755B/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "A4198C,C7011T" }, +"mutations": { "nuc" : [ "A4198C","C7011T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "312", +"branch_attrs": { + "labels": { "nuc mutations": "T9697C" }, +"mutations": { "nuc" : [ "T9697C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.180"}}, +"children":[ { +"name": "England/MILK-978626/2020|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "C147T,C12473T,C19602T,C23266T,A29517G" }, +"mutations": { "nuc" : [ "C147T","C12473T","C19602T","C23266T","A29517G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9A565D/2020|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "A2140G,C3015T,C9165T,C10448T,C11866T,T28813G" }, +"mutations": { "nuc" : [ "A2140G","C3015T","C9165T","C10448T","C11866T","T28813G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "313", +"branch_attrs": { + "labels": { "nuc mutations": "C4582T" }, +"mutations": { "nuc" : [ "C4582T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.189"}}, +"children":[ { +"name": "USA/NM-QDX-264/2020|MT806796.1|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "G6404T,C17999T,T25123C,G28378T" }, +"mutations": { "nuc" : [ "G6404T","C17999T","T25123C","G28378T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-10902/2020|MW276406.1|20-08-19", +"branch_attrs": { + "labels": { "nuc mutations": "C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A" }, +"mutations": { "nuc" : [ "C854T","A6659G","G12731A","A13276G","G14656T","G21295T","A25442T","C28093T","G29227A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "314", +"branch_attrs": { + "labels": { "nuc mutations": "T17126C" }, +"mutations": { "nuc" : [ "T17126C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.157"}}, +"children":[ { +"name": "Scotland/EDB1198/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "T5161A,C25046T,G29742T" }, +"mutations": { "nuc" : [ "T5161A","C25046T","G29742T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-20A84/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C28201T,C28546A" }, +"mutations": { "nuc" : [ "C28201T","C28546A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "315", +"branch_attrs": { + "labels": { "nuc mutations": "C6472T,C7815T" }, +"mutations": { "nuc" : [ "C6472T","C7815T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.418"}}, +"children":[ { +"name": "Scotland/EDB6324/2020|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G22363T,T23406C,T26972C" }, +"mutations": { "nuc" : [ "G22363T","T23406C","T26972C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-01"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB4579/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "G13397A,C21682T" }, +"mutations": { "nuc" : [ "G13397A","C21682T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-06"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "316", +"branch_attrs": { + "labels": { "nuc mutations": "G29734C" }, +"mutations": { "nuc" : [ "G29734C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "317", +"branch_attrs": { + "labels": { "nuc mutations": "C17104T" }, +"mutations": { "nuc" : [ "C17104T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "318", +"branch_attrs": { + "labels": { "nuc mutations": "T7767C,C8047T,C22879A" }, +"mutations": { "nuc" : [ "T7767C","C8047T","C22879A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "319", +"branch_attrs": { + "labels": { "nuc mutations": "C27800A" }, +"mutations": { "nuc" : [ "C27800A" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258"}}, +"children":[ { +"name": "England/MILK-ACC08E/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T" }, +"mutations": { "nuc" : [ "G5578A","A6707G","A19116G","C22664T","T27207C","G27962T","G28812T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "320", +"branch_attrs": { + "labels": { "nuc mutations": "C7844T,T24925C,C27920T" }, +"mutations": { "nuc" : [ "C7844T","T24925C","C27920T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/QEUH-9696CE/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2644A,C5221T,C26985T" }, +"mutations": { "nuc" : [ "C2644A","C5221T","C26985T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "321", +"branch_attrs": { + "labels": { "nuc mutations": "C4893T,C29762T" }, +"mutations": { "nuc" : [ "C4893T","C29762T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.16"}}, +"children":[ { +"name": "England/MILK-9A9F7C/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G19879A,C25433T" }, +"mutations": { "nuc" : [ "G19879A","C25433T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/OXON-F42364/2020|20-12-18", +"branch_attrs": { + "labels": { "nuc mutations": "G1306T,G4510T,T8662C,C8733T,C18032T" }, +"mutations": { "nuc" : [ "G1306T","G4510T","T8662C","C8733T","C18032T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "322", +"branch_attrs": { + "labels": { "nuc mutations": "G12988T,G15598A,G18028T,T24910C,T26972C" }, +"mutations": { "nuc" : [ "G12988T","G15598A","G18028T","T24910C","T26972C" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "323", +"branch_attrs": { + "labels": { "nuc mutations": "G25494T" }, +"mutations": { "nuc" : [ "G25494T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "324", +"branch_attrs": { + "labels": { "nuc mutations": "C25386T" }, +"mutations": { "nuc" : [ "C25386T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.6"}}, +"children":[ { +"name": "England/CAMC-A57F03/2020|20-10-09", +"branch_attrs": { + "labels": { "nuc mutations": "T505C,A2419G,G17058T" }, +"mutations": { "nuc" : [ "T505C","A2419G","G17058T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A7D15C/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C21302T,C21304A,C26256T,C27119T,C28453T" }, +"mutations": { "nuc" : [ "C21302T","C21304A","C26256T","C27119T","C28453T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "325", +"branch_attrs": { + "labels": { "nuc mutations": "G28817T" }, +"mutations": { "nuc" : [ "G28817T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.7"}}, +"children":[ { +"name": "Wales/PHWC-47F3A5/2020|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "T9655C,G28198T" }, +"mutations": { "nuc" : [ "T9655C","G28198T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-07"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A85BCC/2020|20-10-17", +"branch_attrs": { + "labels": { "nuc mutations": "T209C,T11857C" }, +"mutations": { "nuc" : [ "T209C","T11857C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "326", +"branch_attrs": { + "labels": { "nuc mutations": "C20451T,G21770A" }, +"mutations": { "nuc" : [ "C20451T","G21770A" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "327", +"branch_attrs": { + "labels": { "nuc mutations": "T7919G" }, +"mutations": { "nuc" : [ "T7919G" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.10"}}, +"children":[ { +"name": "England/ALDP-A2FCA3/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "C24734T" }, +"mutations": { "nuc" : [ "C24734T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/MILK-A69E6B/2020|20-10-09", +"branch_attrs": { + "labels": { "nuc mutations": "A28483G,A28877G" }, +"mutations": { "nuc" : [ "A28483G","A28877G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-09"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "328", +"branch_attrs": { + "labels": { "nuc mutations": "G18583A" }, +"mutations": { "nuc" : [ "G18583A" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.12"}}, +"children":[ { +"name": "England/MILK-A7D1A7/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "T4579A,T27835C" }, +"mutations": { "nuc" : [ "T4579A","T27835C" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A91486/2020|20-10-16", +"branch_attrs": { + "labels": { "nuc mutations": "G2272T,G20679T,G24586T" }, +"mutations": { "nuc" : [ "G2272T","G20679T","G24586T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "329", +"branch_attrs": { + "labels": { "nuc mutations": "C16394T,C22127T,G23876A,G25947T" }, +"mutations": { "nuc" : [ "C16394T","C22127T","G23876A","G25947T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "330", +"branch_attrs": { + "labels": { "nuc mutations": "C29274T" }, +"mutations": { "nuc" : [ "C29274T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "331", +"branch_attrs": { + "labels": { "nuc mutations": "G25218T" }, +"mutations": { "nuc" : [ "G25218T" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.4"}}, +"children":[ { +"name": "England/ALDP-AA169C/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C23191T,G23909A" }, +"mutations": { "nuc" : [ "C23191T","G23909A" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A474DA/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "A6659G" }, +"mutations": { "nuc" : [ "A6659G" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "332", +"branch_attrs": { + "labels": { "nuc mutations": "T8110C" }, +"mutations": { "nuc" : [ "T8110C" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.5"}}, +"children":[ { +"name": "England/ALDP-B483EA/2020|20-11-07", +"branch_attrs": { + "labels": { "nuc mutations": "C10039A,T18402C,C29738T" }, +"mutations": { "nuc" : [ "C10039A","T18402C","C29738T" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "20-11-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AA0035/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T" }, +"mutations": { "nuc" : [ "G11417T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "333", +"branch_attrs": { + "labels": { "nuc mutations": "C829T,C14697T,C18176T,G19398T,G28083T,G28975T" }, +"mutations": { "nuc" : [ "C829T","C14697T","C18176T","G19398T","G28083T","G28975T" ] } + }, +"node_attrs": { + "div":26, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.17"}}, +"children":[ { +"name": "AUT/2021006354/2021|MW672357.1|21-02", +"branch_attrs": { + "labels": { "nuc mutations": "C878T,C12374T,C20384T,C21639T,C29367T" }, +"mutations": { "nuc" : [ "C878T","C12374T","C20384T","C21639T","C29367T" ] } + }, +"node_attrs": { "div": 31, "date": {"value": "21-02"}, "country": {"value": "AUT"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-E7F4C6/2021|21-01-02", +"branch_attrs": { + "labels": { "nuc mutations": "T9070C,C10296T" }, +"mutations": { "nuc" : [ "T9070C","C10296T" ] } + }, +"node_attrs": { "div": 28, "date": {"value": "21-01-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "334", +"branch_attrs": { + "labels": { "nuc mutations": "G18186T,C28854T" }, +"mutations": { "nuc" : [ "G18186T","C28854T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.14"}}, +"children":[ { +"name": "England/CAMC-B3582D/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "A9859G,C14531T" }, +"mutations": { "nuc" : [ "A9859G","C14531T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A796E8/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T" }, +"mutations": { "nuc" : [ "G7360T","G18255T","C22264T","C23929T","G25302T","C25672T","C27519A","C28512T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "335", +"branch_attrs": { + "labels": { "nuc mutations": "G1464A,A10978T,T20799C" }, +"mutations": { "nuc" : [ "G1464A","A10978T","T20799C" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "336", +"branch_attrs": { + "labels": { "nuc mutations": "G5572T,G28375T" }, +"mutations": { "nuc" : [ "G5572T","G28375T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.2"}}, +"children":[ { +"name": "337", +"branch_attrs": { + "labels": { "nuc mutations": "G2072A,C27294T" }, +"mutations": { "nuc" : [ "G2072A","C27294T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "G.1"}}, +"children":[ { +"name": "England/MILK-9C2766/2020|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "T22189C,G27382C,A27383T,T27384C" }, +"mutations": { "nuc" : [ "T22189C","G27382C","A27383T","T27384C" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A95A9F/2020|20-10-19", +"branch_attrs": { + "labels": { "nuc mutations": "T14499C,C17118T,C23854T,A27865T,T27866A" }, +"mutations": { "nuc" : [ "T14499C","C17118T","C23854T","A27865T","T27866A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "Northern_Ireland/QEUH-969C53/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C19545T,C26408T" }, +"mutations": { "nuc" : [ "C19545T","C26408T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "338", +"branch_attrs": { + "labels": { "nuc mutations": "G18803T" }, +"mutations": { "nuc" : [ "G18803T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.3"}}, +"children":[ { +"name": "England/ALDP-9E79B0/2020|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "C5817T,T10321C,A10724G,C16469T,C21635T,G25320T" }, +"mutations": { "nuc" : [ "C5817T","T10321C","A10724G","C16469T","C21635T","G25320T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B561FE/2020|20-11-06", +"branch_attrs": { + "labels": { "nuc mutations": "C1288T,T16213C,A23631G,C26681T,G27882T" }, +"mutations": { "nuc" : [ "C1288T","T16213C","A23631G","C26681T","G27882T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-11-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "339", +"branch_attrs": { + "labels": { "nuc mutations": "C3411T,C3885T" }, +"mutations": { "nuc" : [ "C3411T","C3885T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.256"}}, +"children":[ { +"name": "Scotland/CVR2213/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "T3411C,A3413T,A5353G" }, +"mutations": { "nuc" : [ "T3411C","A3413T","A5353G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-11"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR1909/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C7279T,A14001G,C26801T" }, +"mutations": { "nuc" : [ "C7279T","A14001G","C26801T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-06"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "340", +"branch_attrs": { + "labels": { "nuc mutations": "G12550A,C20740A" }, +"mutations": { "nuc" : [ "G12550A","C20740A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.190"}}, +"children":[ { +"name": "Netherlands/Friesland_9/2020|LR878060.1|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C6628T,C18483T" }, +"mutations": { "nuc" : [ "C6628T","C18483T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-30"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/Friesland_6/2020|LR878056.1|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "C17977T,G28975T" }, +"mutations": { "nuc" : [ "C17977T","G28975T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-28"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "341", +"branch_attrs": { + "labels": { "nuc mutations": "C15324T" }, +"mutations": { "nuc" : [ "C15324T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.5"}}, +"children":[ { +"name": "England/NOTT-10E1B3/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "T3952C,C6268T,T15324C" }, +"mutations": { "nuc" : [ "T3952C","C6268T","T15324C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-37/2020|MT706158.1|20-03-22", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T" }, +"mutations": { "nuc" : [ "G11417T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "342", +"branch_attrs": { + "labels": { "nuc mutations": "C18904T,G25606T" }, +"mutations": { "nuc" : [ "C18904T","G25606T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.151"}}, +"children":[ { +"name": "Wales/PHWC-360E3/2020|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "A3260G,T7185C,G21867T,G25266T,A26513G,G29462C" }, +"mutations": { "nuc" : [ "A3260G","T7185C","G21867T","G25266T","A26513G","G29462C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-26"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2630/2020|MW191335.1|20-03-15", +"branch_attrs": { + "labels": { "nuc mutations": "C21646T,C22208T" }, +"mutations": { "nuc" : [ "C21646T","C22208T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "343", +"branch_attrs": { + "labels": { "nuc mutations": "T10561C" }, +"mutations": { "nuc" : [ "T10561C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.220"}}, +"children":[ { +"name": "Netherlands/NA_289/2020|LR878031.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C12085T,A23173G,C28844T" }, +"mutations": { "nuc" : [ "C12085T","A23173G","C28844T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-31"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "France/10065EE/2020|MT470176.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "C26895T,C29013T" }, +"mutations": { "nuc" : [ "C26895T","C29013T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03"}, "country": {"value": "France"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "344", +"branch_attrs": { + "labels": { "nuc mutations": "C3634T,C28854T" }, +"mutations": { "nuc" : [ "C3634T","C28854T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.210"}}, +"children":[ { +"name": "IND/nimh-19510/2020|MW181843.1|20-05-16", +"branch_attrs": { + "labels": { "nuc mutations": "C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T" }, +"mutations": { "nuc" : [ "C1684T","G2819T","T4949C","C8025T","T28854C","G28899T","C29376T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-16"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC174b/2020|MT607610.1|20-06-05", +"branch_attrs": { + "labels": { "nuc mutations": "C22444T" }, +"mutations": { "nuc" : [ "C22444T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-05"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "345", +"branch_attrs": { + "labels": { "nuc mutations": "G28202A" }, +"mutations": { "nuc" : [ "G28202A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.178"}}, +"children":[ { +"name": "France/10036BG/2020|MT470106.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03"}, "country": {"value": "France"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IHUCOVID-0033|LR794417.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "G16089A,G24794T" }, +"mutations": { "nuc" : [ "G16089A","G24794T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0033|LR794417.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "346", +"branch_attrs": { + "labels": { "nuc mutations": "C25433T" }, +"mutations": { "nuc" : [ "C25433T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.147"}}, +"children":[ { +"name": "England/PORT-2D0D4C/2020|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "A10781G,A16169G,G21600T,C29546T" }, +"mutations": { "nuc" : [ "A10781G","A16169G","G21600T","C29546T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100210/2020|LR884314.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C1191A,G15260A" }, +"mutations": { "nuc" : [ "C1191A","G15260A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "347", +"branch_attrs": { + "labels": { "nuc mutations": "A7031G,G13617T" }, +"mutations": { "nuc" : [ "A7031G","G13617T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.213"}}, +"children":[ { +"name": "POL/PL_MCB_72/2020|MW273854.1|20-05-10", +"branch_attrs": { + "labels": { "nuc mutations": "A2848G,C9286T,C23202T" }, +"mutations": { "nuc" : [ "A2848G","C9286T","C23202T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-10"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "POL/PL_MCB_97/2020|MW273879.1|20-05-10", +"branch_attrs": { + "labels": { "nuc mutations": "C2570T" }, +"mutations": { "nuc" : [ "C2570T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-10"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "348", +"branch_attrs": { + "labels": { "nuc mutations": "G19542T,G20679A,T27576G" }, +"mutations": { "nuc" : [ "G19542T","G20679A","T27576G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.209"}}, +"children":[ { +"name": "Scotland/CVR3629/2020|20-05-24", +"branch_attrs": { + "labels": { "nuc mutations": "G18380T" }, +"mutations": { "nuc" : [ "G18380T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-24"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-5456F9/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C6606T" }, +"mutations": { "nuc" : [ "C6606T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "349", +"branch_attrs": { + "labels": { "nuc mutations": "C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T" }, +"mutations": { "nuc" : [ "C622T","G4657T","T5182C","C11758T","C12043T","G16846T","C25075T","C25904T","C28269T","C29733T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.149"}}, +"children":[ { +"name": "England/QEUH-9CE80D/2020|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "A21018G,C21302T,C21304A,G21305A,C27167T,C28708T" }, +"mutations": { "nuc" : [ "A21018G","C21302T","C21304A","G21305A","C27167T","C28708T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-990752/2020|20-08-29", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "350", +"branch_attrs": { + "labels": { "nuc mutations": "C15277T" }, +"mutations": { "nuc" : [ "C15277T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.6"}}, +"children":[ { +"name": "AUS/VIC38/2020|MT450953.1|20-03-11", +"branch_attrs": { + "labels": { "nuc mutations": "C10350T" }, +"mutations": { "nuc" : [ "C10350T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-11"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IHUCOVID-0133|LR794459.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "C8394T" }, +"mutations": { "nuc" : [ "C8394T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0133|LR794459.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "351", +"branch_attrs": { + "labels": { "nuc mutations": "A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T" }, +"mutations": { "nuc" : [ "A4457G","C4891T","C5907T","C12312T","A15187G","C23709T","T27576C","A28273T","A28274G","G28276C","G28280A","C28846T","C28887T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.214"}}, +"children":[ { +"name": "England/PHEC-1555C0/2021|21-01-16", +"branch_attrs": { + "labels": { "nuc mutations": "C673T,A11430G,C21846T,C22995A,C25504G,G25894A" }, +"mutations": { "nuc" : [ "C673T","A11430G","C21846T","C22995A","C25504G","G25894A" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-01-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-E6578E/2020|20-12-30", +"branch_attrs": { + "labels": { "nuc mutations": "C5184T,A9204G,A10248G,C19975A" }, +"mutations": { "nuc" : [ "C5184T","A9204G","A10248G","C19975A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "352", +"branch_attrs": { + "labels": { "nuc mutations": "G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T" }, +"mutations": { "nuc" : [ "G521T","A761G","A1904G","G4904A","C6681T","C6726T","C9559T","C16762T","G16912T","G19735T","C23934T","C25642T","C26110T","G26221A","A26332G","G28380A","G29764T" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.208"}}, +"children":[ { +"name": "England/CAMC-106052A/2021|21-01-16", +"branch_attrs": { + "labels": { "nuc mutations": "C14184T,A15402G,C23170T,C24138A,C24381T,T25303C" }, +"mutations": { "nuc" : [ "C14184T","A15402G","C23170T","C24138A","C24381T","T25303C" ] } + }, +"node_attrs": { "div": 28, "date": {"value": "21-01-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LOND-12F6633/2020|20-12-15", +"branch_attrs": { + "labels": { "nuc mutations": "G9425T,C21997T,G24116A,C29200T" }, +"mutations": { "nuc" : [ "G9425T","C21997T","G24116A","C29200T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-12-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "353", +"branch_attrs": { + "labels": { "nuc mutations": "G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A" }, +"mutations": { "nuc" : [ "G3239A","G7042T","T17142A","T17688C","G21334T","G28655A","G28881A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.218"}}, +"children":[ { +"name": "Switzerland/240009/2020|LR880588.1|20-08-07", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-07"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/240084/2020|LR880634.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "C815T,C8752T,C25904T,G27147T" }, +"mutations": { "nuc" : [ "C815T","C8752T","C25904T","G27147T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-12"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "354", +"branch_attrs": { + "labels": { "nuc mutations": "A26530G" }, +"mutations": { "nuc" : [ "A26530G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "355", +"branch_attrs": { + "labels": { "nuc mutations": "G11596T" }, +"mutations": { "nuc" : [ "G11596T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.96"}}, +"children":[ { +"name": "USA/MN67-MDH67/2020|MT911566.1|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_292/2020|LR878032.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G20568A" }, +"mutations": { "nuc" : [ "G20568A" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-01"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "356", +"branch_attrs": { + "labels": { "nuc mutations": "C8293T,T18488C,T24739C" }, +"mutations": { "nuc" : [ "C8293T","T18488C","T24739C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.128"}}, +"children":[ { +"name": "Switzerland/101166/2020|LR824397.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C22323T" }, +"mutations": { "nuc" : [ "C22323T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-31"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100154/2020|LR824311.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C17118T" }, +"mutations": { "nuc" : [ "C17118T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-16"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "357", +"branch_attrs": { + "labels": { "nuc mutations": "C15277T,A21917G" }, +"mutations": { "nuc" : [ "C15277T","A21917G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.205"}}, +"children":[ { +"name": "PER/covper020/2020|MW030251.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T" }, +"mutations": { "nuc" : [ "T1147C","C5907T","A17429G","G21917A","C25872T","C27881T","C28651T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-03"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/covper091/2020|MW030227.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-17"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "358", +"branch_attrs": { + "labels": { "nuc mutations": "A2775G,G4255T,C13568T,A20355G" }, +"mutations": { "nuc" : [ "A2775G","G4255T","C13568T","A20355G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.97"}}, +"children":[ { +"name": "England/CAMB-737D6/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C6861T" }, +"mutations": { "nuc" : [ "C6861T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1B08D9/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "C14235T,G25699T" }, +"mutations": { "nuc" : [ "C14235T","G25699T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "359", +"branch_attrs": { + "labels": { "nuc mutations": "G3831A" }, +"mutations": { "nuc" : [ "G3831A" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.215"}}, +"children":[ { +"name": "Scotland/CVR2927/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "A1801G,C9857T,C18568T" }, +"mutations": { "nuc" : [ "A1801G","C9857T","C18568T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/GCVR-173C30/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "T7441C" }, +"mutations": { "nuc" : [ "T7441C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-07"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "360", +"branch_attrs": { + "labels": { "nuc mutations": "T445C,C6286T,G21255C,C22227T,C28932T,G29645T" }, +"mutations": { "nuc" : [ "T445C","C6286T","G21255C","C22227T","C28932T","G29645T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.24"}}, +"children":[ { +"name": "361", +"branch_attrs": { + "labels": { "nuc mutations": "C26801G" }, +"mutations": { "nuc" : [ "C26801G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": "20E.EU1"}, "MAT_Clade_1": {"value": "B.1.177.14"}}, +"children":[ { +"name": "362", +"branch_attrs": { + "labels": { "nuc mutations": "C3426T,C19862T" }, +"mutations": { "nuc" : [ "C3426T","C19862T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "363", +"branch_attrs": { + "labels": { "nuc mutations": "C11050A" }, +"mutations": { "nuc" : [ "C11050A" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-BB0022/2020|20-11-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-BB0031/2020|20-11-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/PHEC-152C73/2020|20-11-16", +"branch_attrs": { + "labels": { "nuc mutations": "C21682T" }, +"mutations": { "nuc" : [ "C21682T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "364", +"branch_attrs": { + "labels": { "nuc mutations": "T12226C" }, +"mutations": { "nuc" : [ "T12226C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/QEUH-96B4E0/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C3093T,C11102T,C18555T" }, +"mutations": { "nuc" : [ "C3093T","C11102T","C18555T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-17"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9AA782/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C16362T,C19164T,G21786T,C24904T" }, +"mutations": { "nuc" : [ "C16362T","C19164T","G21786T","C24904T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "365", +"branch_attrs": { + "labels": { "nuc mutations": "T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T" }, +"mutations": { "nuc" : [ "T4195A","C10977T","G25049T","G25062T","C26151T","C28657T","C29366T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.11"}}, +"children":[ { +"name": "Scotland/QEUH-9D11C0/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "C24334T" }, +"mutations": { "nuc" : [ "C24334T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-16"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-A0077A/2020|20-10-02", +"branch_attrs": { + "labels": { "nuc mutations": "C6027T,T10977C,A25327G" }, +"mutations": { "nuc" : [ "C6027T","T10977C","A25327G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "366", +"branch_attrs": { + "labels": { "nuc mutations": "C27944T" }, +"mutations": { "nuc" : [ "C27944T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177"}}, +"children":[ { +"name": "England/ALDP-AA0ED1/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C445T,G28079T" }, +"mutations": { "nuc" : [ "C445T","G28079T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-A4CF6B/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "C4534T,C5544T" }, +"mutations": { "nuc" : [ "C4534T","C5544T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "367", +"branch_attrs": { + "labels": { "nuc mutations": "G204T" }, +"mutations": { "nuc" : [ "G204T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "368", +"branch_attrs": { + "labels": { "nuc mutations": "T16242A" }, +"mutations": { "nuc" : [ "T16242A" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.21"}}, +"children":[ { +"name": "England/ALDP-9BE8B5/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "G28745A" }, +"mutations": { "nuc" : [ "G28745A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB10724/2020|20-12-04", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,C10615T,T12134C,C21365T,C22987T" }, +"mutations": { "nuc" : [ "C2509T","C10615T","T12134C","C21365T","C22987T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "369", +"branch_attrs": { + "labels": { "nuc mutations": "C21614T" }, +"mutations": { "nuc" : [ "C21614T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.22"}}, +"children":[ { +"name": "Scotland/CVR4309/2020|20-09-14", +"branch_attrs": { + "labels": { "nuc mutations": "C7471T" }, +"mutations": { "nuc" : [ "C7471T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "370", +"branch_attrs": { + "labels": { "nuc mutations": "C6317T" }, +"mutations": { "nuc" : [ "C6317T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.6"}}, +"children":[ { +"name": "England/CAMC-9DFBC4/2020|20-09-21", +"branch_attrs": { + "labels": { "nuc mutations": "G9658T,T21841C" }, +"mutations": { "nuc" : [ "G9658T","T21841C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AD1165/2020|20-10-25", +"branch_attrs": { + "labels": { "nuc mutations": "C4795T,T5471C,A21631T" }, +"mutations": { "nuc" : [ "C4795T","T5471C","A21631T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "371", +"branch_attrs": { + "labels": { "nuc mutations": "G17944T,C24334T,T24814C,C27769T" }, +"mutations": { "nuc" : [ "G17944T","C24334T","T24814C","C27769T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.12"}}, +"children":[ { +"name": "England/ALDP-FB5E3E/2021|21-01-11", +"branch_attrs": { + "labels": { "nuc mutations": "G1141A,T11522G,A13315G,C18744T,T21973C" }, +"mutations": { "nuc" : [ "G1141A","T11522G","A13315G","C18744T","T21973C" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-E8756E/2021|21-01-04", +"branch_attrs": { + "labels": { "nuc mutations": "C12781T,G17632A,C28453T" }, +"mutations": { "nuc" : [ "C12781T","G17632A","C28453T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "21-01-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "372", +"branch_attrs": { + "labels": { "nuc mutations": "T24769C,C25460T" }, +"mutations": { "nuc" : [ "T24769C","C25460T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.5"}}, +"children":[ { +"name": "England/ALDP-A2EAE6/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "C337T,T21294A,G21295A,G21296A,A25008G" }, +"mutations": { "nuc" : [ "C337T","T21294A","G21295A","G21296A","A25008G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-A636C3/2020|20-10-10", +"branch_attrs": { + "labels": { "nuc mutations": "C593T,T26903C,C26936T" }, +"mutations": { "nuc" : [ "C593T","T26903C","C26936T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-10"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "373", +"branch_attrs": { + "labels": { "nuc mutations": "C15480T" }, +"mutations": { "nuc" : [ "C15480T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.7"}}, +"children":[ { +"name": "England/QEUH-A76C07/2020|20-10-12", +"branch_attrs": { + "labels": { "nuc mutations": "G21777A" }, +"mutations": { "nuc" : [ "G21777A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-AC7997/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C125T" }, +"mutations": { "nuc" : [ "C125T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "374", +"branch_attrs": { + "labels": { "nuc mutations": "G8179T" }, +"mutations": { "nuc" : [ "G8179T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.8"}}, +"children":[ { +"name": "Scotland/QEUH-9DC927/2020|20-09-22", +"branch_attrs": { + "labels": { "nuc mutations": "C4794T,T8179G,G23006A" }, +"mutations": { "nuc" : [ "C4794T","T8179G","G23006A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-9B75D3/2020|20-09-04", +"branch_attrs": { + "labels": { "nuc mutations": "G29778T" }, +"mutations": { "nuc" : [ "G29778T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "375", +"branch_attrs": { + "labels": { "nuc mutations": "C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T" }, +"mutations": { "nuc" : [ "C10507T","C11152T","C11824T","A18840G","G23309C","G26918T","G27589A","G28436T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.26"}}, +"children":[ { +"name": "England/QEUH-9B3A8D/2020|20-09-04", +"branch_attrs": { + "labels": { "nuc mutations": "T11152C,T11824C" }, +"mutations": { "nuc" : [ "T11152C","T11824C" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-09-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-F1F9C/2020|20-10-24", +"branch_attrs": { + "labels": { "nuc mutations": "C203T,C5183T,A8031G,C9207T,C25521T,G26690T" }, +"mutations": { "nuc" : [ "C203T","C5183T","A8031G","C9207T","C25521T","G26690T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-10-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "376", +"branch_attrs": { + "labels": { "nuc mutations": "A1987G" }, +"mutations": { "nuc" : [ "A1987G" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "377", +"branch_attrs": { + "labels": { "nuc mutations": "T14721C,T25519G" }, +"mutations": { "nuc" : [ "T14721C","T25519G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.2"}}, +"children":[ { +"name": "England/QEUH-AE4EA4/2020|20-10-27", +"branch_attrs": { + "labels": { "nuc mutations": "C26894T,T28277C,A28612G" }, +"mutations": { "nuc" : [ "C26894T","T28277C","A28612G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9BECB9/2020|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "C23029T" }, +"mutations": { "nuc" : [ "C23029T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "378", +"branch_attrs": { + "labels": { "nuc mutations": "G6344T" }, +"mutations": { "nuc" : [ "G6344T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.3"}}, +"children":[ { +"name": "Wales/PHWC-16E6A3/2020|20-10-02", +"branch_attrs": { + "labels": { "nuc mutations": "C3768T,C5031T,C18555T,T20976C" }, +"mutations": { "nuc" : [ "C3768T","C5031T","C18555T","T20976C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-02"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9A9D09/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "A1230G" }, +"mutations": { "nuc" : [ "A1230G" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "379", +"branch_attrs": { + "labels": { "nuc mutations": "C66T,G10870T,A11781G,C25614T" }, +"mutations": { "nuc" : [ "C66T","G10870T","A11781G","C25614T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.4"}}, +"children":[ { +"name": "England/QEUH-B6C0E9/2020|20-11-11", +"branch_attrs": { + "labels": { "nuc mutations": "C5730T,C14318T,C23644T,C29739T" }, +"mutations": { "nuc" : [ "C5730T","C14318T","C23644T","C29739T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-AEA62E/2020|20-10-25", +"branch_attrs": { + "labels": { "nuc mutations": "C18329T" }, +"mutations": { "nuc" : [ "C18329T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "380", +"branch_attrs": { + "labels": { "nuc mutations": "A1866G,A6889C,C12923T,C18029T,C19269T,A27137G" }, +"mutations": { "nuc" : [ "A1866G","A6889C","C12923T","C18029T","C19269T","A27137G" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.25"}}, +"children":[ { +"name": "England/PHEC-14E15D/2020|20-12-09", +"branch_attrs": { + "labels": { "nuc mutations": "C20178T" }, +"mutations": { "nuc" : [ "C20178T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-149635/2020|20-10-28", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "381", +"branch_attrs": { + "labels": { "nuc mutations": "C13671T,C14805T,G17278T,A20284T,T20285C,A27755T" }, +"mutations": { "nuc" : [ "C13671T","C14805T","G17278T","A20284T","T20285C","A27755T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.23"}}, +"children":[ { +"name": "Switzerland/270068/2020|LR882987.1|20-09-02", +"branch_attrs": { + "labels": { "nuc mutations": "G17058T" }, +"mutations": { "nuc" : [ "G17058T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-02"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/332169/2020|LR898966.1|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "G21830T,C27881T" }, +"mutations": { "nuc" : [ "G21830T","C27881T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-22"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "382", +"branch_attrs": { + "labels": { "nuc mutations": "A408G" }, +"mutations": { "nuc" : [ "A408G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "383", +"branch_attrs": { + "labels": { "nuc mutations": "C22088T,C29686T" }, +"mutations": { "nuc" : [ "C22088T","C29686T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.17"}}, +"children":[ { +"name": "England/ALDP-A95DE1/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "G21193T,G24794T,G25135T,G26801C,T26843C" }, +"mutations": { "nuc" : [ "G21193T","G24794T","G25135T","G26801C","T26843C" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9E75E9/2020|20-09-25", +"branch_attrs": { + "labels": { "nuc mutations": "G2764T" }, +"mutations": { "nuc" : [ "G2764T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "384", +"branch_attrs": { + "labels": { "nuc mutations": "G27877T" }, +"mutations": { "nuc" : [ "G27877T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.13"}}, +"children":[ { +"name": "England/MILK-AC7B0A/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C7528T,G24098T,C28315T,G28939T" }, +"mutations": { "nuc" : [ "C7528T","G24098T","C28315T","G28939T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NOTT-11336A/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "G713A,A21127G,T26163C" }, +"mutations": { "nuc" : [ "G713A","A21127G","T26163C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "385", +"branch_attrs": { + "labels": { "nuc mutations": "C28310A" }, +"mutations": { "nuc" : [ "C28310A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.16"}}, +"children":[ { +"name": "England/MILK-ABB8D5/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C9857A,A28304T" }, +"mutations": { "nuc" : [ "C9857A","A28304T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-2884A8/2020|20-11-22", +"branch_attrs": { + "labels": { "nuc mutations": "C6525T,C10376T,G17032A,C23557T,C24106T" }, +"mutations": { "nuc" : [ "C6525T","C10376T","G17032A","C23557T","C24106T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-11-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "386", +"branch_attrs": { + "labels": { "nuc mutations": "G23311C" }, +"mutations": { "nuc" : [ "G23311C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "387", +"branch_attrs": { + "labels": { "nuc mutations": "T29185A" }, +"mutations": { "nuc" : [ "T29185A" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.19"}}, +"children":[ { +"name": "England/MILK-A799FE/2020|20-10-15", +"branch_attrs": { + "labels": { "nuc mutations": "A2658G,C17004T,C17125T" }, +"mutations": { "nuc" : [ "A2658G","C17004T","C17125T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-A417F5/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "T23062C,G27459T,G29755T" }, +"mutations": { "nuc" : [ "T23062C","G27459T","G29755T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "388", +"branch_attrs": { + "labels": { "nuc mutations": "C10626T" }, +"mutations": { "nuc" : [ "C10626T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.20"}}, +"children":[ { +"name": "England/QEUH-AE2A48/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "C6114A,T17208C" }, +"mutations": { "nuc" : [ "C6114A","T17208C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A68CF9/2020|20-10-12", +"branch_attrs": { + "labels": { "nuc mutations": "G6476T" }, +"mutations": { "nuc" : [ "G6476T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "389", +"branch_attrs": { + "labels": { "nuc mutations": "G25440T,C27752T" }, +"mutations": { "nuc" : [ "G25440T","C27752T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.18"}}, +"children":[ { +"name": "England/CAMB-1B6439/2020|20-09-22", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G,C28310A" }, +"mutations": { "nuc" : [ "A10323G","C28310A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9F1898/2020|20-09-25", +"branch_attrs": { + "labels": { "nuc mutations": "C5239T" }, +"mutations": { "nuc" : [ "C5239T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "390", +"branch_attrs": { + "labels": { "nuc mutations": "G22346T" }, +"mutations": { "nuc" : [ "G22346T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "391", +"branch_attrs": { + "labels": { "nuc mutations": "G28321A" }, +"mutations": { "nuc" : [ "G28321A" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.10"}}, +"children":[ { +"name": "England/MILK-A7CDC2/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "G10996T,G24867T" }, +"mutations": { "nuc" : [ "G10996T","G24867T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-A5845E/2020|20-10-08", +"branch_attrs": { + "labels": { "nuc mutations": "C13009T,G17721T,G18462T,C21234T,G23675C" }, +"mutations": { "nuc" : [ "C13009T","G17721T","G18462T","C21234T","G23675C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "392", +"branch_attrs": { + "labels": { "nuc mutations": "G21800T,A22053C" }, +"mutations": { "nuc" : [ "G21800T","A22053C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.9"}}, +"children":[ { +"name": "England/ALDP-AA10DA/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "T7549C,C9073T,G10870T" }, +"mutations": { "nuc" : [ "T7549C","C9073T","G10870T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-4815AA/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C12049T" }, +"mutations": { "nuc" : [ "C12049T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-13"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "393", +"branch_attrs": { + "labels": { "nuc mutations": "C5170T,C10078T,G11132T,G11417T,G22051T,G29179T" }, +"mutations": { "nuc" : [ "C5170T","C10078T","G11132T","G11417T","G22051T","G29179T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.15"}}, +"children":[ { +"name": "England/QEUH-AD0DDB/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "G14187A,A25948T,C29274T" }, +"mutations": { "nuc" : [ "G14187A","A25948T","C29274T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/MILK-9E3240/2020|20-09-21", +"branch_attrs": { + "labels": { "nuc mutations": "A9409G,T29604C" }, +"mutations": { "nuc" : [ "A9409G","T29604C" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-21"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/ALDP-A6CC8C/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "C6627T,C25791T,C26270T" }, +"mutations": { "nuc" : [ "C6627T","C25791T","C26270T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "394", +"branch_attrs": { + "labels": { "nuc mutations": "A24862G" }, +"mutations": { "nuc" : [ "A24862G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.8"}}, +"children":[ { +"name": "USA/CA-CZB-2091/2020|MT750490.1|20-05-07", +"branch_attrs": { + "labels": { "nuc mutations": "T7132C,C8327T,C9112T,C24442T,G25429T" }, +"mutations": { "nuc" : [ "T7132C","C8327T","C9112T","C24442T","G25429T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/140091/2020|LR824563.1|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "T658C,A2655C,C28629T" }, +"mutations": { "nuc" : [ "T658C","A2655C","C28629T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "395", +"branch_attrs": { + "labels": { "nuc mutations": "C7834T,C16997T,G25429T" }, +"mutations": { "nuc" : [ "C7834T","C16997T","G25429T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.179"}}, +"children":[ { +"name": "England/ALDP-49A5AE/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C2983T,G10565A,C17336T" }, +"mutations": { "nuc" : [ "C2983T","G10565A","C17336T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-4A2A77/2020|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "396", +"branch_attrs": { + "labels": { "nuc mutations": "C1909T" }, +"mutations": { "nuc" : [ "C1909T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.81"}}, +"children":[ { +"name": "England/BRIS-12755E/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C9438T,G16647T,C22264T" }, +"mutations": { "nuc" : [ "C9438T","G16647T","C22264T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12468B/2020|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "T27576C" }, +"mutations": { "nuc" : [ "T27576C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "397", +"branch_attrs": { + "labels": { "nuc mutations": "C2940T" }, +"mutations": { "nuc" : [ "C2940T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.201"}}, +"children":[ { +"name": "England/NORW-E9DF7/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "C7765T" }, +"mutations": { "nuc" : [ "C7765T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB156/2020|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "C4276T,C26822T,G29227A" }, +"mutations": { "nuc" : [ "C4276T","C26822T","G29227A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-23"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "398", +"branch_attrs": { + "labels": { "nuc mutations": "C6990T" }, +"mutations": { "nuc" : [ "C6990T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.395"}}, +"children":[ { +"name": "Wales/PHWC-27B20/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "T22435C" }, +"mutations": { "nuc" : [ "T22435C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-30"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2624A/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "C27476T" }, +"mutations": { "nuc" : [ "C27476T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-27"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "399", +"branch_attrs": { + "labels": { "nuc mutations": "C29200T" }, +"mutations": { "nuc" : [ "C29200T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.35"}}, +"children":[ { +"name": "Wales/PHWC-16930B/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "C3264T" }, +"mutations": { "nuc" : [ "C3264T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-34285/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "A6616G,C12915T" }, +"mutations": { "nuc" : [ "A6616G","C12915T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-14"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "400", +"branch_attrs": { + "labels": { "nuc mutations": "C26256T,C29668T" }, +"mutations": { "nuc" : [ "C26256T","C29668T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.384"}}, +"children":[ { +"name": "USA/UT-08320/2020|MW206019.1|20-05-15", +"branch_attrs": { + "labels": { "nuc mutations": "A11782G,G27987T,C28292A,G29755T" }, +"mutations": { "nuc" : [ "A11782G","G27987T","C28292A","G29755T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C5184T,C5416T,G8017T" }, +"mutations": { "nuc" : [ "C5184T","C5416T","G8017T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "401", +"branch_attrs": { + "labels": { "nuc mutations": "T26512C" }, +"mutations": { "nuc" : [ "T26512C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.67"}}, +"children":[ { +"name": "Wales/PHWC-2BF8A/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C19011T,C22323T,C26415T" }, +"mutations": { "nuc" : [ "C19011T","C22323T","C26415T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-02"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-29E43/2020|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "G9220A" }, +"mutations": { "nuc" : [ "G9220A" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-04"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "402", +"branch_attrs": { + "labels": { "nuc mutations": "C25350T" }, +"mutations": { "nuc" : [ "C25350T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.98"}}, +"children":[ { +"name": "England/LOND-D3534/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "T27280C" }, +"mutations": { "nuc" : [ "T27280C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-20C24/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C3096T,G3939A,G8179T" }, +"mutations": { "nuc" : [ "C3096T","G3939A","G8179T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "403", +"branch_attrs": { + "labels": { "nuc mutations": "T17835C" }, +"mutations": { "nuc" : [ "T17835C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.76"}}, +"children":[ { +"name": "England/CAMB-7D2EA/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "G26273T,C26408T,C29370T" }, +"mutations": { "nuc" : [ "G26273T","C26408T","C29370T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LIVE-A63E5/2020|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "G680T" }, +"mutations": { "nuc" : [ "G680T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "404", +"branch_attrs": { + "labels": { "nuc mutations": "A25575C" }, +"mutations": { "nuc" : [ "A25575C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.383"}}, +"children":[ { +"name": "Wales/PHWC-260C8/2020|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "C12242T,C22264T" }, +"mutations": { "nuc" : [ "C12242T","C22264T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-26"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12F969/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C96T,C4113T,G14857T" }, +"mutations": { "nuc" : [ "C96T","C4113T","G14857T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "405", +"branch_attrs": { + "labels": { "nuc mutations": "C14741T" }, +"mutations": { "nuc" : [ "C14741T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.142"}}, +"children":[ { +"name": "England/PHEC-2083F/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "A187G,A5650G,C25350T" }, +"mutations": { "nuc" : [ "A187G","A5650G","C25350T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-16C6F0/2020|20-06-09", +"branch_attrs": { + "labels": { "nuc mutations": "T8944C,G25552T" }, +"mutations": { "nuc" : [ "T8944C","G25552T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-06-09"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "406", +"branch_attrs": { + "labels": { "nuc mutations": "A1610G,C9344T,C13335T,C28887T" }, +"mutations": { "nuc" : [ "A1610G","C9344T","C13335T","C28887T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.131"}}, +"children":[ { +"name": "England/QEUH-B2DD0B/2020|20-11-03", +"branch_attrs": { + "labels": { "nuc mutations": "G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G" }, +"mutations": { "nuc" : [ "G2086T","G2995T","G12031A","A17759G","A17799G","G19816T","A21231G","C21742T","T21760C","C22000T","C24370T","A25814G" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-11-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A7B0BB/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T" }, +"mutations": { "nuc" : [ "C222T","C841T","G1958A","A4870G","C6543T","C7955T","C12488T","A25946C","C29095T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "407", +"branch_attrs": { + "labels": { "nuc mutations": "C5506T,G14241T" }, +"mutations": { "nuc" : [ "C5506T","G14241T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.376"}}, +"children":[ { +"name": "Wales/PHWC-27461/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C19374T" }, +"mutations": { "nuc" : [ "C19374T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-31"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-29F13/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "C19151T,G23612A" }, +"mutations": { "nuc" : [ "C19151T","G23612A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "408", +"branch_attrs": { + "labels": { "nuc mutations": "T7438C,C29353T" }, +"mutations": { "nuc" : [ "T7438C","C29353T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.23"}}, +"children":[ { +"name": "AUS/VIC989/2020|MT451674.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "A26864G,C27630T" }, +"mutations": { "nuc" : [ "A26864G","C27630T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-31"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1056/2020|MT451723.1|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A21944T" }, +"mutations": { "nuc" : [ "A21944T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-03"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "409", +"branch_attrs": { + "labels": { "nuc mutations": "A187G" }, +"mutations": { "nuc" : [ "A187G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "410", +"branch_attrs": { + "labels": { "nuc mutations": "C16017T,T27212C,G27561T" }, +"mutations": { "nuc" : [ "C16017T","T27212C","G27561T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.207"}}, +"children":[ { +"name": "USA/TX-DSHS-0342/2020|MW114979.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C16393T,G18546T,C24718A,C27600T,C29421T" }, +"mutations": { "nuc" : [ "C16393T","G18546T","C24718A","C27600T","C29421T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1397/2020|MW309099.1|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "A10770G" }, +"mutations": { "nuc" : [ "A10770G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "411", +"branch_attrs": { + "labels": { "nuc mutations": "C19066A" }, +"mutations": { "nuc" : [ "C19066A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.198"}}, +"children":[ { +"name": "England/BRIS-12B2BD/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "A1699G,C6361T,C25797T,C27577T,C27641T" }, +"mutations": { "nuc" : [ "A1699G","C6361T","C25797T","C27577T","C27641T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-128DCE/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C12213T" }, +"mutations": { "nuc" : [ "C12213T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "412", +"branch_attrs": { + "labels": { "nuc mutations": "G14580T" }, +"mutations": { "nuc" : [ "G14580T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.153"}}, +"children":[ { +"name": "England/LIVE-A65EF/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "G10523C" }, +"mutations": { "nuc" : [ "G10523C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2B7CE/2020|20-04-12", +"branch_attrs": { + "labels": { "nuc mutations": "C9857T,G28903C" }, +"mutations": { "nuc" : [ "C9857T","G28903C" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-12"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "413", +"branch_attrs": { + "labels": { "nuc mutations": "A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T" }, +"mutations": { "nuc" : [ "A2292C","C2836T","G4300T","C18568T","C18877T","G21724T","C29750T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.113"}}, +"children":[ { +"name": "IND/GBRC238b/2020|MT676367.1|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "T18877C,C22444T,C28887T,T29750C" }, +"mutations": { "nuc" : [ "T18877C","C22444T","C28887T","T29750C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-12"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC209a/2020|MT664202.1|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "G25563T" }, +"mutations": { "nuc" : [ "G25563T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-11"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "414", +"branch_attrs": { + "labels": { "nuc mutations": "C1884T,T26497C" }, +"mutations": { "nuc" : [ "C1884T","T26497C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.70"}}, +"children":[ { +"name": "Scotland/GCVR-1725BE/2020|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "C6730T,G28001T" }, +"mutations": { "nuc" : [ "C6730T","G28001T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR30/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "415", +"branch_attrs": { + "labels": { "nuc mutations": "G4866T,C14425A" }, +"mutations": { "nuc" : [ "G4866T","C14425A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.145"}}, +"children":[ { +"name": "IND/GBRC99/2020|MT509504.1|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A21511G" }, +"mutations": { "nuc" : [ "A21511G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-06"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC31/2020|MT467247.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C3737T,C12710T,T21890C" }, +"mutations": { "nuc" : [ "C3737T","C12710T","T21890C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-29"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "416", +"branch_attrs": { + "labels": { "nuc mutations": "C6723T,T26094C" }, +"mutations": { "nuc" : [ "C6723T","T26094C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.197"}}, +"children":[ { +"name": "AUS/VIC1239/2020|MT451821.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G28476T" }, +"mutations": { "nuc" : [ "G28476T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-02"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1282/2020|MW153048.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "G6650T,T7034C,T18974G" }, +"mutations": { "nuc" : [ "G6650T","T7034C","T18974G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "417", +"branch_attrs": { + "labels": { "nuc mutations": "C4084T" }, +"mutations": { "nuc" : [ "C4084T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.143"}}, +"children":[ { +"name": "IND/GBRC128/2020|MT539172.1|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "G5572T" }, +"mutations": { "nuc" : [ "G5572T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-05-02"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC123/2020|MT539176.1|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "G5194T,C22326T" }, +"mutations": { "nuc" : [ "G5194T","C22326T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-02"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "418", +"branch_attrs": { + "labels": { "nuc mutations": "A544G,C17104T" }, +"mutations": { "nuc" : [ "A544G","C17104T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.187"}}, +"children":[ { +"name": "POL/PL_MCB_32/2020|MW273814.1|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C1594T,A3090T,C23635T" }, +"mutations": { "nuc" : [ "C1594T","A3090T","C23635T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "POL/PL_MCB_75/2020|MW273857.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-16"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "419", +"branch_attrs": { + "labels": { "nuc mutations": "G20275A" }, +"mutations": { "nuc" : [ "G20275A" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.414"}}, +"children":[ { +"name": "England/CAMB-7BED9/2020|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "A6672G,C10641T" }, +"mutations": { "nuc" : [ "A6672G","C10641T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_302/2020|LR878041.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "A3058G" }, +"mutations": { "nuc" : [ "A3058G" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-01"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "420", +"branch_attrs": { + "labels": { "nuc mutations": "C13862T,C28836T" }, +"mutations": { "nuc" : [ "C13862T","C28836T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.93"}}, +"children":[ { +"name": "England/NORT-289814/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "C9165T,T21033C" }, +"mutations": { "nuc" : [ "C9165T","T21033C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9ED57A/2020|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "A23796G,G23824T,C29095T" }, +"mutations": { "nuc" : [ "A23796G","G23824T","C29095T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "421", +"branch_attrs": { + "labels": { "nuc mutations": "G2282A,T9742C,C17639T" }, +"mutations": { "nuc" : [ "G2282A","T9742C","C17639T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.206"}}, +"children":[ { +"name": "USA/WI-UW-1385/2020|MW035549.1|20-09-06", +"branch_attrs": { + "labels": { "nuc mutations": "C18508T,G19174T,G24883T,C26370T,C28868T" }, +"mutations": { "nuc" : [ "C18508T","G19174T","G24883T","C26370T","C28868T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0975/2020|MW217385.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "G20160T" }, +"mutations": { "nuc" : [ "G20160T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "422", +"branch_attrs": { + "labels": { "nuc mutations": "C28603T,G28899T" }, +"mutations": { "nuc" : [ "C28603T","G28899T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.390"}}, +"children":[ { +"name": "USA/MA_MGH_00165/2020|MT520528.1|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "C10279T,C12132T,T16077C,T20401C" }, +"mutations": { "nuc" : [ "C10279T","C12132T","T16077C","T20401C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00711/2020|MT520198.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "A2104G,T21656C,G25244C" }, +"mutations": { "nuc" : [ "A2104G","T21656C","G25244C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "423", +"branch_attrs": { + "labels": { "nuc mutations": "C23422T,T23849C,C29686T" }, +"mutations": { "nuc" : [ "C23422T","T23849C","C29686T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.69"}}, +"children":[ { +"name": "Scotland/CVR129/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "G29227A" }, +"mutations": { "nuc" : [ "G29227A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR52/2020|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "C25667T" }, +"mutations": { "nuc" : [ "C25667T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "424", +"branch_attrs": { + "labels": { "nuc mutations": "G3338T,C3511T,A22301G,G29508A" }, +"mutations": { "nuc" : [ "G3338T","C3511T","A22301G","G29508A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.77"}}, +"children":[ { +"name": "England/ALDP-94D8D9/2020|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "C19698T,C27393T" }, +"mutations": { "nuc" : [ "C19698T","C27393T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9442D4/2020|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "T3616A,T23686C,T27634C" }, +"mutations": { "nuc" : [ "T3616A","T23686C","T27634C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "425", +"branch_attrs": { + "labels": { "nuc mutations": "G29422T" }, +"mutations": { "nuc" : [ "G29422T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.78"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-1022CB/2020|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "C1997T,C28708T" }, +"mutations": { "nuc" : [ "C1997T","C28708T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-25"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,G12311T,C12357T,C20148T,C27925A" }, +"mutations": { "nuc" : [ "C2509T","G12311T","C12357T","C20148T","C27925A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-27"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "426", +"branch_attrs": { + "labels": { "nuc mutations": "G28882A,G28883C" }, +"mutations": { "nuc" : [ "G28882A","G28883C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": "20B"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "T241C" }, +"mutations": { "nuc" : [ "T241C" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-20"}, "country": {"value": "Poland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "427", +"branch_attrs": { + "labels": { "nuc mutations": "G28881A" }, +"mutations": { "nuc" : [ "G28881A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.119"}}, +"children":[ { +"name": "428", +"branch_attrs": { + "labels": { "nuc mutations": "C28887T" }, +"mutations": { "nuc" : [ "C28887T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "GRC/202_32984/2020|MT459870.1|20-03-12", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-12"}, "country": {"value": "GRC"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "GRC/208_33922/2020|MT459876.1|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-14"}, "country": {"value": "GRC"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/CAMC-947875/2020|20-07-13", +"branch_attrs": { + "labels": { "nuc mutations": "G25699T,G28884T,C28896T,C29738T" }, +"mutations": { "nuc" : [ "G25699T","G28884T","C28896T","C29738T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "429", +"branch_attrs": { + "labels": { "nuc mutations": "T19839C" }, +"mutations": { "nuc" : [ "T19839C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.4"}}, +"children":[ { +"name": "England/PORT-2D3B4F/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "C17410T,C18788T,G21830C,C27688T,G29742T" }, +"mutations": { "nuc" : [ "C17410T","C18788T","G21830C","C27688T","G29742T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/EXET-136EE8/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C4784T,C15720T,C23664T" }, +"mutations": { "nuc" : [ "C4784T","C15720T","C23664T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "430", +"branch_attrs": { + "labels": { "nuc mutations": "G3242A,G8120C,C21646T,A24205T,G28083T" }, +"mutations": { "nuc" : [ "G3242A","G8120C","C21646T","A24205T","G28083T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.74"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FB967/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C4927T,C15738T,C27527T" }, +"mutations": { "nuc" : [ "C4927T","C15738T","C27527T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-17"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-7A4BBB/2020|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2511T" }, +"mutations": { "nuc" : [ "C2511T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "431", +"branch_attrs": { + "labels": { "nuc mutations": "G242T,C18086T" }, +"mutations": { "nuc" : [ "G242T","C18086T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.158"}}, +"children":[ { +"name": "USA/WA-S2264/2020|MT831437.1|20-06-09", +"branch_attrs": { + "labels": { "nuc mutations": "T242G,C5020T" }, +"mutations": { "nuc" : [ "T242G","C5020T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1922/2020|MT831459.1|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "C12528A" }, +"mutations": { "nuc" : [ "C12528A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "432", +"branch_attrs": { + "labels": { "nuc mutations": "G25552T" }, +"mutations": { "nuc" : [ "G25552T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "433", +"branch_attrs": { + "labels": { "nuc mutations": "G11801A" }, +"mutations": { "nuc" : [ "G11801A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.289"}}, +"children":[ { +"name": "Wales/PHWC-360A7/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "T4330C,T24063C" }, +"mutations": { "nuc" : [ "T4330C","T24063C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-29"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-260AA/2020|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "T7168C" }, +"mutations": { "nuc" : [ "T7168C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-24"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "434", +"branch_attrs": { + "labels": { "nuc mutations": "A26332G,A28877T,G28878C" }, +"mutations": { "nuc" : [ "A26332G","A28877T","G28878C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.2"}}, +"children":[ { +"name": "England/BRIS-185470D/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12AF02/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "G27670T" }, +"mutations": { "nuc" : [ "G27670T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "435", +"branch_attrs": { + "labels": { "nuc mutations": "G10262A,C22995T,A27669G" }, +"mutations": { "nuc" : [ "G10262A","C22995T","A27669G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.3"}}, +"children":[ { +"name": "England/CAMB-83FF9/2020|20-04-25", +"branch_attrs": { + "labels": { "nuc mutations": "C8290T,C12242T" }, +"mutations": { "nuc" : [ "C8290T","C12242T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-75895/2020|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C4965T,C8956T" }, +"mutations": { "nuc" : [ "C4965T","C8956T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-03-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "436", +"branch_attrs": { + "labels": { "nuc mutations": "C28256T,C29784T" }, +"mutations": { "nuc" : [ "C28256T","C29784T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.290"}}, +"children":[ { +"name": "USA/WA-S2012/2020|MT831128.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T" }, +"mutations": { "nuc" : [ "T8559A","G8561A","T10190C","C10507T","C19145T","G27014T","T28256C","G28690T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-06-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1775/2020|MT834200.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G13513A" }, +"mutations": { "nuc" : [ "G13513A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "437", +"branch_attrs": { + "labels": { "nuc mutations": "C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T" }, +"mutations": { "nuc" : [ "C14340T","G17551A","C18877T","A19167G","C19274A","G22017T","G23012A","G23868T","T26604C","C27213T","C28833T","G29527T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "R.1"}}, +"children":[ { +"name": "England/ALDP-B82A0D/2020|20-11-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4456T" }, +"mutations": { "nuc" : [ "C4456T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0664/2021|MW524034.1|21-01-04", +"branch_attrs": { + "labels": { "nuc mutations": "G8015A,C9803T,C25797T" }, +"mutations": { "nuc" : [ "G8015A","C9803T","C25797T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "438", +"branch_attrs": { + "labels": { "nuc mutations": "T25713C" }, +"mutations": { "nuc" : [ "T25713C" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.316"}}, +"children":[ { +"name": "England/MILK-11A5634/2021|21-01-29", +"branch_attrs": { + "labels": { "nuc mutations": "C683T,C11747T,G22022A,T24991A,T25039C" }, +"mutations": { "nuc" : [ "C683T","C11747T","G22022A","T24991A","T25039C" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12", +"branch_attrs": { + "labels": { "nuc mutations": "C5796T,C9360T" }, +"mutations": { "nuc" : [ "C5796T","C9360T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-12"}, "country": {"value": "GHA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "439", +"branch_attrs": { + "labels": { "nuc mutations": "A11839G" }, +"mutations": { "nuc" : [ "A11839G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.5"}}, +"children":[ { +"name": "England/LOND-D6EBE/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "C8293T,C16575T" }, +"mutations": { "nuc" : [ "C8293T","C16575T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-C88A2/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "T3037C,C5878T,C7735T,C10645T" }, +"mutations": { "nuc" : [ "T3037C","C5878T","C7735T","C10645T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "440", +"branch_attrs": { + "labels": { "nuc mutations": "A23756G" }, +"mutations": { "nuc" : [ "A23756G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.222"}}, +"children":[ { +"name": "USA/WA-S860/2020|MT642111.1|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "C4886T,C16178T" }, +"mutations": { "nuc" : [ "C4886T","C16178T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0380/2020|MW292639.1|20-10-27", +"branch_attrs": { + "labels": { "nuc mutations": "T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C" }, +"mutations": { "nuc" : [ "T1169C","G3122T","C14491T","G21641T","G25644T","G26062A","C26270T","T27900C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "441", +"branch_attrs": { + "labels": { "nuc mutations": "C28905T" }, +"mutations": { "nuc" : [ "C28905T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.184"}}, +"children":[ { +"name": "England/QEUH-A0AFB4/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C" }, +"mutations": { "nuc" : [ "G210T","A7040T","C12534T","C21005T","T22588C","A25448G","G25595A","T27685C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-C48747/2020|20-12-12", +"branch_attrs": { + "labels": { "nuc mutations": "G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C" }, +"mutations": { "nuc" : [ "G872A","A2031G","C4320T","G7452T","A7863G","G12872A","A18468C","G23126T","A23586G","G24368C","G28451C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "442", +"branch_attrs": { + "labels": { "nuc mutations": "C3411T,A12519G,C21757T,G23593C,A23756T,G29751T" }, +"mutations": { "nuc" : [ "C3411T","A12519G","C21757T","G23593C","A23756T","G29751T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.85"}}, +"children":[ { +"name": "USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06", +"branch_attrs": { + "labels": { "nuc mutations": "G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T" }, +"mutations": { "nuc" : [ "G2324A","A3069G","C5777T","C12439T","T12703C","C17518A","C17762T","C18647T","T25577C","A28707T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-01-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15", +"branch_attrs": { + "labels": { "nuc mutations": "G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T" }, +"mutations": { "nuc" : [ "G1729A","T2545C","A5695G","G8131T","T11078C","C13724T","G19684A","G29628T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "21-01-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "443", +"branch_attrs": { + "labels": { "nuc mutations": "G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C" }, +"mutations": { "nuc" : [ "G3871T","C4999T","A5040G","G14371T","C15240T","G23012A","A25048G","G25166C" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "R.2"}}, +"children":[ { +"name": "USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08", +"branch_attrs": { + "labels": { "nuc mutations": "C22264T" }, +"mutations": { "nuc" : [ "C22264T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA-MGH-03951/2021|MW617773.1|21-01-22", +"branch_attrs": { + "labels": { "nuc mutations": "T27824C" }, +"mutations": { "nuc" : [ "T27824C" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "444", +"branch_attrs": { + "labels": { "nuc mutations": "C6573T" }, +"mutations": { "nuc" : [ "C6573T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "445", +"branch_attrs": { + "labels": { "nuc mutations": "T2537G,G12191T,T16479C" }, +"mutations": { "nuc" : [ "T2537G","G12191T","T16479C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.232"}}, +"children":[ { +"name": "Switzerland/230051/2020|LR882355.1|20-08-04", +"branch_attrs": { + "labels": { "nuc mutations": "T7396C,C14120T,G25471T" }, +"mutations": { "nuc" : [ "T7396C","C14120T","G25471T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-04"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/MILK-9C729D/2020|20-09-12", +"branch_attrs": { + "labels": { "nuc mutations": "A6659G,C6883T,C13261T,C15774T" }, +"mutations": { "nuc" : [ "A6659G","C6883T","C13261T","C15774T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-12"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "446", +"branch_attrs": { + "labels": { "nuc mutations": "C25528T" }, +"mutations": { "nuc" : [ "C25528T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.8"}}, +"children":[ { +"name": "England/BRIS-12A70A/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C21077T" }, +"mutations": { "nuc" : [ "C21077T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-77F61/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G22299A" }, +"mutations": { "nuc" : [ "G22299A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "447", +"branch_attrs": { + "labels": { "nuc mutations": "C18115T" }, +"mutations": { "nuc" : [ "C18115T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.131"}}, +"children":[ { +"name": "England/PHEC-215FB/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "A5855G,C18110T,A27277G" }, +"mutations": { "nuc" : [ "A5855G","C18110T","A27277G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-1B7C1/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "448", +"branch_attrs": { + "labels": { "nuc mutations": "C27046T" }, +"mutations": { "nuc" : [ "C27046T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.257"}}, +"children":[ { +"name": "Switzerland/120182/2020|LR860799.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "G13897T,C24621T,T26038C,G26550A,T27046C" }, +"mutations": { "nuc" : [ "G13897T","C24621T","T26038C","G26550A","T27046C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-27"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9545BA/2020|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C" }, +"mutations": { "nuc" : [ "T1623C","C3961T","C4577T","T7009A","C15010T","C15173T","C16568A","G17058T","C20474T","G20977T","C27143T","T28026C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-06-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "449", +"branch_attrs": { + "labels": { "nuc mutations": "T27264G" }, +"mutations": { "nuc" : [ "T27264G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.125"}}, +"children":[ { +"name": "England/ALDP-651C9D/2020|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C3698T,A28765T" }, +"mutations": { "nuc" : [ "C3698T","A28765T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3919/2020|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "A22330G" }, +"mutations": { "nuc" : [ "A22330G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-21"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "450", +"branch_attrs": { + "labels": { "nuc mutations": "C1800A,C23854T,G25972A,G27842T" }, +"mutations": { "nuc" : [ "C1800A","C23854T","G25972A","G27842T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.203"}}, +"children":[ { +"name": "England/ALDP-9558ED/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "G2398A" }, +"mutations": { "nuc" : [ "G2398A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-286255/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "C5000T,C13883T,C18395T" }, +"mutations": { "nuc" : [ "C5000T","C13883T","C18395T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "451", +"branch_attrs": { + "labels": { "nuc mutations": "T11638C" }, +"mutations": { "nuc" : [ "T11638C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.71"}}, +"children":[ { +"name": "England/BRIS-12F78D/2020|20-03-10", +"branch_attrs": { + "labels": { "nuc mutations": "C25584A" }, +"mutations": { "nuc" : [ "C25584A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100802/2020|LR824314.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "C8389T,C29708T" }, +"mutations": { "nuc" : [ "C8389T","C29708T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-25"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "452", +"branch_attrs": { + "labels": { "nuc mutations": "C17678T" }, +"mutations": { "nuc" : [ "C17678T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.157"}}, +"children":[ { +"name": "England/NORT-282972/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-80554/2020|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "T3745C" }, +"mutations": { "nuc" : [ "T3745C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "453", +"branch_attrs": { + "labels": { "nuc mutations": "C21597T,C29144T" }, +"mutations": { "nuc" : [ "C21597T","C29144T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.63"}}, +"children":[ { +"name": "PHL/UPMNIH_C1/2020|MW243995.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T" }, +"mutations": { "nuc" : [ "C1869T","C4686T","A12820G","C13176T","T18513A","C18606T","C18981T","C19164T","G25166C","G28209T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-07"}, "country": {"value": "PHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PHL/COVID-6009/2020|MT919790.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "C3736T,T10771C,C13051T,C26305T" }, +"mutations": { "nuc" : [ "C3736T","T10771C","C13051T","C26305T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-18"}, "country": {"value": "PHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "454", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T" }, +"mutations": { "nuc" : [ "C1912T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.250"}}, +"children":[ { +"name": "England/PHEC-20E4C/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C7200T,C8290T" }, +"mutations": { "nuc" : [ "C7200T","C8290T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-283B7B/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "T28118C,G29227A" }, +"mutations": { "nuc" : [ "T28118C","G29227A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "455", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T" }, +"mutations": { "nuc" : [ "C9430T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.189"}}, +"children":[ { +"name": "England/ALDP-95665B/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "G571A,G9575A,C10074T" }, +"mutations": { "nuc" : [ "G571A","G9575A","C10074T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7767B/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C23802T,C28045T" }, +"mutations": { "nuc" : [ "C23802T","C28045T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "456", +"branch_attrs": { + "labels": { "nuc mutations": "T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T" }, +"mutations": { "nuc" : [ "T1094C","C3429T","G8578T","C8917T","A10720G","G17280T","C18129T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.201"}}, +"children":[ { +"name": "England/CAMC-94328A/2020|20-07-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-9424A3/2020|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "457", +"branch_attrs": { + "labels": { "nuc mutations": "T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T" }, +"mutations": { "nuc" : [ "T760C","A1673G","C1884T","C16329T","C18120T","C18267T","C20762T","C22713T","C29296T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.238"}}, +"children":[ { +"name": "USA/MA-QDX-3180/2021|MW505247.1|21-01-05", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "21-01-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06", +"branch_attrs": { + "labels": { "nuc mutations": "G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T" }, +"mutations": { "nuc" : [ "G2086T","C11005A","C11195T","C16111T","C20936T","G27827A","A28624T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "458", +"branch_attrs": { + "labels": { "nuc mutations": "G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T" }, +"mutations": { "nuc" : [ "G3152A","G4255A","G4510T","C5884T","C6983T","C11308T","C13019T","A22155G","C29353T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.196"}}, +"children":[ { +"name": "England/MILK-A79D10/2020|20-10-15", +"branch_attrs": { + "labels": { "nuc mutations": "C4113T,T17214C,C19324A,G28044T" }, +"mutations": { "nuc" : [ "C4113T","T17214C","C19324A","G28044T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-148F95/2020|20-10-15", +"branch_attrs": { + "labels": { "nuc mutations": "C2644T,C9319T,G13348T,C19113A" }, +"mutations": { "nuc" : [ "C2644T","C9319T","G13348T","C19113A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "459", +"branch_attrs": { + "labels": { "nuc mutations": "T4711C,A6709G" }, +"mutations": { "nuc" : [ "T4711C","A6709G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.172"}}, +"children":[ { +"name": "USA/CA-CZB-1932/2020|MT750412.1|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C2842T,C18570T" }, +"mutations": { "nuc" : [ "C2842T","C18570T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-1885/2020|MT750387.1|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "C17125T" }, +"mutations": { "nuc" : [ "C17125T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "460", +"branch_attrs": { + "labels": { "nuc mutations": "G5539A,G21468A" }, +"mutations": { "nuc" : [ "G5539A","G21468A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.205"}}, +"children":[ { +"name": "USA/CA-CZB-2288/2020|MW036089.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "T1937C,A15820G,T22441G" }, +"mutations": { "nuc" : [ "T1937C","A15820G","T22441G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3891/2020|MW134292.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "C6578T,C16049T,G19872C,C26768T" }, +"mutations": { "nuc" : [ "C6578T","C16049T","G19872C","C26768T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "461", +"branch_attrs": { + "labels": { "nuc mutations": "C936T,G3259T" }, +"mutations": { "nuc" : [ "C936T","G3259T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.304"}}, +"children":[ { +"name": "USA/VA-DCLS-1485/2020|MW205988.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "C8326T,G21641T,C26681T" }, +"mutations": { "nuc" : [ "C8326T","G21641T","C26681T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1212/2020|MW067767.1|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "A20860G,C28087T" }, +"mutations": { "nuc" : [ "A20860G","C28087T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "462", +"branch_attrs": { + "labels": { "nuc mutations": "C673T" }, +"mutations": { "nuc" : [ "C673T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.192"}}, +"children":[ { +"name": "USA/FL-BPHL-1506/2020|MW056153.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C379T,T4125C,C14220T,T25479A" }, +"mutations": { "nuc" : [ "C379T","T4125C","C14220T","T25479A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1469/2020|MW040679.1|20-05-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "463", +"branch_attrs": { + "labels": { "nuc mutations": "G9130T,T27319C,G28487A,C28868T" }, +"mutations": { "nuc" : [ "G9130T","T27319C","G28487A","C28868T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.39"}}, +"children":[ { +"name": "Switzerland/250060/2020|LR881882.1|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "G1186A,C3738T,C16111T,G29706T" }, +"mutations": { "nuc" : [ "G1186A","C3738T","C16111T","G29706T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-A77F0D/2020|20-10-12", +"branch_attrs": { + "labels": { "nuc mutations": "C6091T,G9389A,G12845A,C18713T,G24095T,G25249T" }, +"mutations": { "nuc" : [ "C6091T","G9389A","G12845A","C18713T","G24095T","G25249T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "464", +"branch_attrs": { + "labels": { "nuc mutations": "G443A,G28378T" }, +"mutations": { "nuc" : [ "G443A","G28378T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.174"}}, +"children":[ { +"name": "USA/CA-CZB-11677/2020|MW276577.1|20-08-16", +"branch_attrs": { + "labels": { "nuc mutations": "C21614T,C21855T,T23042C" }, +"mutations": { "nuc" : [ "C21614T","C21855T","T23042C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-13945/2020|MW565647.1|20-06-22", +"branch_attrs": { + "labels": { "nuc mutations": "T6579C" }, +"mutations": { "nuc" : [ "T6579C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "465", +"branch_attrs": { + "labels": { "nuc mutations": "G24781T,G29706T" }, +"mutations": { "nuc" : [ "G24781T","G29706T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.194"}}, +"children":[ { +"name": "466", +"branch_attrs": { + "labels": { "nuc mutations": "A20742C,C28087T,C28310T,A29521T,G29645T,T29706G" }, +"mutations": { "nuc" : [ "A20742C","C28087T","C28310T","A29521T","G29645T","T29706G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.240"}}, +"children":[ { +"name": "England/QEUH-9AE4E1/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C18267T,G29736T" }, +"mutations": { "nuc" : [ "C18267T","G29736T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A180DE/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "A4764G,C21952T,G26257A" }, +"mutations": { "nuc" : [ "A4764G","C21952T","G26257A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/OXON-AEBC7/2020|20-04-12", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T" }, +"mutations": { "nuc" : [ "C9430T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "467", +"branch_attrs": { + "labels": { "nuc mutations": "C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T" }, +"mutations": { "nuc" : [ "C829T","C1960T","C5301T","C13247T","C14937T","T18144C","C26681T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.138"}}, +"children":[ { +"name": "England/QEUH-96E27A/2020|20-08-20", +"branch_attrs": { + "labels": { "nuc mutations": "C936T,G25785T,G28857T" }, +"mutations": { "nuc" : [ "C936T","G25785T","G28857T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-74C001/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C21789T,G29779T" }, +"mutations": { "nuc" : [ "C21789T","G29779T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "468", +"branch_attrs": { + "labels": { "nuc mutations": "C9438T,G29777T" }, +"mutations": { "nuc" : [ "C9438T","G29777T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.38"}}, +"children":[ { +"name": "England/LOND-D4C6B/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "A8681G,C10369T" }, +"mutations": { "nuc" : [ "A8681G","C10369T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-164485/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "A16653G" }, +"mutations": { "nuc" : [ "A16653G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-02"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "469", +"branch_attrs": { + "labels": { "nuc mutations": "G922T,C6541T,C19983T" }, +"mutations": { "nuc" : [ "G922T","C6541T","C19983T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.155"}}, +"children":[ { +"name": "England/ALDP-5C701F/2020|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "T1863C,T19983C" }, +"mutations": { "nuc" : [ "T1863C","T19983C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-51F142/2020|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "470", +"branch_attrs": { + "labels": { "nuc mutations": "C3170T,C6336T,C27673T" }, +"mutations": { "nuc" : [ "C3170T","C6336T","C27673T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.145"}}, +"children":[ { +"name": "England/ALDP-955FAC/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "A2130T,C11572T,C19961T,G20006T,C25207T" }, +"mutations": { "nuc" : [ "A2130T","C11572T","C19961T","G20006T","C25207T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-49E391/2020|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "T26260G" }, +"mutations": { "nuc" : [ "T26260G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "471", +"branch_attrs": { + "labels": { "nuc mutations": "C6781T,C11916T,C19185T" }, +"mutations": { "nuc" : [ "C6781T","C11916T","C19185T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.128"}}, +"children":[ { +"name": "USA/CA-CZB-10287/2020|MW276300.1|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T" }, +"mutations": { "nuc" : [ "A2871C","C5575T","C8299T","C12400T","G24743A","G28086T","G28884T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3356/2020|MW134125.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "A16920G,G25906T" }, +"mutations": { "nuc" : [ "A16920G","G25906T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "472", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,T9151C,C9693T,C13887T,T16456C,C23248T" }, +"mutations": { "nuc" : [ "C1912T","T9151C","C9693T","C13887T","T16456C","C23248T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.153"}}, +"children":[ { +"name": "England/LOND-126DFA5/2020|20-12-27", +"branch_attrs": { + "labels": { "nuc mutations": "C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T" }, +"mutations": { "nuc" : [ "C1457T","T10939C","G18292T","C21910T","A23324T","T27346C","C29741T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-4846A4/2020|20-10-24", +"branch_attrs": { + "labels": { "nuc mutations": "C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T" }, +"mutations": { "nuc" : [ "C1348T","G5830A","C17750T","G25552T","C27005T","G28884T","T28897C","G29260T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-24"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "473", +"branch_attrs": { + "labels": { "nuc mutations": "C10376T,C26208T" }, +"mutations": { "nuc" : [ "C10376T","C26208T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.160"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-10677D/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "G18148A" }, +"mutations": { "nuc" : [ "G18148A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-106740/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C11259T,C26681T" }, +"mutations": { "nuc" : [ "C11259T","C26681T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "474", +"branch_attrs": { + "labels": { "nuc mutations": "C26447T" }, +"mutations": { "nuc" : [ "C26447T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.261"}}, +"children":[ { +"name": "England/SHEF-C9FBB/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "C1190T,A25410C,C25831T,T26447C" }, +"mutations": { "nuc" : [ "C1190T","A25410C","C25831T","T26447C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LOND-D6531/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C2710T,T2872C,C3041A" }, +"mutations": { "nuc" : [ "C2710T","T2872C","C3041A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "475", +"branch_attrs": { + "labels": { "nuc mutations": "A27932G,G29705T" }, +"mutations": { "nuc" : [ "A27932G","G29705T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.165"}}, +"children":[ { +"name": "England/MILK-9705F4/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "C15045T" }, +"mutations": { "nuc" : [ "C15045T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9B6440/2020|20-08-28", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-08-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "476", +"branch_attrs": { + "labels": { "nuc mutations": "G25088T" }, +"mutations": { "nuc" : [ "G25088T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.28"}}, +"children":[ { +"name": "477", +"branch_attrs": { + "labels": { "nuc mutations": "A6319G,T26149C" }, +"mutations": { "nuc" : [ "A6319G","T26149C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-99D597/2020|20-08-30", +"branch_attrs": { + "labels": { "nuc mutations": "C6629T,C15720T,G27877T,G27996T,A29424T,G29688A" }, +"mutations": { "nuc" : [ "C6629T","C15720T","G27877T","G27996T","A29424T","G29688A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "478", +"branch_attrs": { + "labels": { "nuc mutations": "T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C" }, +"mutations": { "nuc" : [ "T733C","C2749T","C3828T","A5648C","A6613G","C12778T","C13860T","G17259T","C21614T","C21621A","C21638T","G21974T","G22132T","G23012A","A23063T","C23525T","C24642T","G28167A","C28512G","A28877T","G28878C" ] } + }, +"node_attrs": { + "div":31, "MAT_Clade_0": {"value": "20J/501Y.V3"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/MD-MDH-0841/2021|MW621433.1|21-01-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 31, "date": {"value": "21-01-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11", +"branch_attrs": { + "labels": { "nuc mutations": "G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T" }, +"mutations": { "nuc" : [ "G2664A","C6627T","C15352T","C16428T","C20703T","G21786T","A22812C","C28826T" ] } + }, +"node_attrs": { "div": 39, "date": {"value": "21-01-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "Scotland/EDB6515/2020|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-15"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "479", +"branch_attrs": { + "labels": { "nuc mutations": "C12053T" }, +"mutations": { "nuc" : [ "C12053T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "480", +"branch_attrs": { + "labels": { "nuc mutations": "C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T" }, +"mutations": { "nuc" : [ "C100T","T10667G","C11824T","G23012A","G28628T","G28975T","C29754T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "P.2"}}, +"children":[ { +"name": "England/NORW-222D0F/2020|20-12-20", +"branch_attrs": { + "labels": { "nuc mutations": "C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T" }, +"mutations": { "nuc" : [ "C2340T","T3766C","T12302C","A12964G","A27237G","G28077T","T28245C","C28892T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-F72F49/2021|21-01-05", +"branch_attrs": { + "labels": { "nuc mutations": "C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T" }, +"mutations": { "nuc" : [ "C556T","C1628A","A8233G","T14313C","A17612G","C25117T","A25575G","C25613G","C28315T","G28378T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "481", +"branch_attrs": { + "labels": { "nuc mutations": "T22020C,G23628T,C25728T,G26063T" }, +"mutations": { "nuc" : [ "T22020C","G23628T","C25728T","G26063T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.143"}}, +"children":[ { +"name": "USA/FL-CDC-21490280/2021|MW667214.1|21-01-27", +"branch_attrs": { + "labels": { "nuc mutations": "G2155T,C6541T,C10029T,C20844T,A24775C,G28914T" }, +"mutations": { "nuc" : [ "G2155T","C6541T","C10029T","C20844T","A24775C","G28914T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "21-01-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NY-CDC-21712201/2021|MW668883.1|21-02-04", +"branch_attrs": { + "labels": { "nuc mutations": "C6541T,C6606T,G11926A,G27933T,G27990A" }, +"mutations": { "nuc" : [ "C6541T","C6606T","G11926A","G27933T","G27990A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "21-02-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "482", +"branch_attrs": { + "labels": { "nuc mutations": "C24904T,T25088G" }, +"mutations": { "nuc" : [ "C24904T","T25088G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.251"}}, +"children":[ { +"name": "England/NORW-EE34B/2020|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "G18315A" }, +"mutations": { "nuc" : [ "G18315A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-E8693/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C1348T,C3653T" }, +"mutations": { "nuc" : [ "C1348T","C3653T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "483", +"branch_attrs": { + "labels": { "nuc mutations": "T772C,A2869G,C10868T,G15652T,C29095T" }, +"mutations": { "nuc" : [ "T772C","A2869G","C10868T","G15652T","C29095T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.277"}}, +"children":[ { +"name": "England/QEUH-AD487C/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "C186T,C12025T,C28819T" }, +"mutations": { "nuc" : [ "C186T","C12025T","C28819T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B7B2C/2020|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "T14313C,G23438T" }, +"mutations": { "nuc" : [ "T14313C","G23438T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "484", +"branch_attrs": { + "labels": { "nuc mutations": "A11782G,T21570G,T25473C" }, +"mutations": { "nuc" : [ "A11782G","T21570G","T25473C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.241"}}, +"children":[ { +"name": "Switzerland/250070/2020|LR881870.1|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "C512T,T28297C" }, +"mutations": { "nuc" : [ "C512T","T28297C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B5344/2020|20-09-02", +"branch_attrs": { + "labels": { "nuc mutations": "C27641T,G28913T" }, +"mutations": { "nuc" : [ "C27641T","G28913T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "485", +"branch_attrs": { + "labels": { "nuc mutations": "A2576T,C5175T,C6401T" }, +"mutations": { "nuc" : [ "A2576T","C5175T","C6401T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.255"}}, +"children":[ { +"name": "England/ALDP-6839B9/2020|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "A27691T" }, +"mutations": { "nuc" : [ "A27691T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6BAB59/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C11620T,C22993T" }, +"mutations": { "nuc" : [ "C11620T","C22993T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "486", +"branch_attrs": { + "labels": { "nuc mutations": "C1427T" }, +"mutations": { "nuc" : [ "C1427T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.254"}}, +"children":[ { +"name": "FRA/Env-Di/2020|MT709105.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "G3419A,G3871T,C13517T" }, +"mutations": { "nuc" : [ "G3419A","G3871T","C13517T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-14"}, "country": {"value": "FRA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1786/2020|MT612326.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C6195T,C10969T,T17568C,G20679T,T28098C,C29722T" }, +"mutations": { "nuc" : [ "C6195T","C10969T","T17568C","G20679T","T28098C","C29722T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-27"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "487", +"branch_attrs": { + "labels": { "nuc mutations": "C12809T" }, +"mutations": { "nuc" : [ "C12809T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.105"}}, +"children":[ { +"name": "England/CAMB-7620F/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C4876T,T12809C" }, +"mutations": { "nuc" : [ "C4876T","T12809C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C4795T,C29171T" }, +"mutations": { "nuc" : [ "C4795T","C29171T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-15"}, "country": {"value": "TUR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "488", +"branch_attrs": { + "labels": { "nuc mutations": "C1471T" }, +"mutations": { "nuc" : [ "C1471T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.54"}}, +"children":[ { +"name": "Scotland/QEUH-96C6AD/2020|20-08-07", +"branch_attrs": { + "labels": { "nuc mutations": "C19524T,C20759T,G25088T,C26912T,C28292A,C29739T" }, +"mutations": { "nuc" : [ "C19524T","C20759T","G25088T","C26912T","C28292A","C29739T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-07"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/270108/2020|LR882077.1|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "G2782T,C15251A,C21034T,C21590T,G23302A" }, +"mutations": { "nuc" : [ "G2782T","C15251A","C21034T","C21590T","G23302A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-03"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "489", +"branch_attrs": { + "labels": { "nuc mutations": "G25912T" }, +"mutations": { "nuc" : [ "G25912T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.274"}}, +"children":[ { +"name": "England/PHEC-1DF03/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C18568T,G24348T" }, +"mutations": { "nuc" : [ "C18568T","G24348T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AB21F/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "C6385T,C12880T" }, +"mutations": { "nuc" : [ "C6385T","C12880T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "490", +"branch_attrs": { + "labels": { "nuc mutations": "T22843C" }, +"mutations": { "nuc" : [ "T22843C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.180"}}, +"children":[ { +"name": "USA/FL-BPHL-0838/2020|MT890317.1|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "T28010A,T28127C" }, +"mutations": { "nuc" : [ "T28010A","T28127C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1607/2020|MW166073.1|20-07-28", +"branch_attrs": { + "labels": { "nuc mutations": "C18652T" }, +"mutations": { "nuc" : [ "C18652T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "491", +"branch_attrs": { + "labels": { "nuc mutations": "G3323T,C10369T,G18674A" }, +"mutations": { "nuc" : [ "G3323T","C10369T","G18674A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.286"}}, +"children":[ { +"name": "England/QEUH-9DE381/2020|20-09-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G" }, +"mutations": { "nuc" : [ "C5183T","C9246T","C9891T","C17125T","G19480T","T26409C","C27418T","A28860G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-95E7D8/2020|20-08-06", +"branch_attrs": { + "labels": { "nuc mutations": "C14177T,C25553T,C28121T" }, +"mutations": { "nuc" : [ "C14177T","C25553T","C28121T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "492", +"branch_attrs": { + "labels": { "nuc mutations": "A2526C,C10440T,T25316C" }, +"mutations": { "nuc" : [ "A2526C","C10440T","T25316C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.55"}}, +"children":[ { +"name": "England/NOTT-111E3E/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "G199T,C9474T,C17163T,G25186T,G29688T" }, +"mutations": { "nuc" : [ "G199T","C9474T","C17163T","G25186T","G29688T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NOTT-111117/2020|20-05-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "493", +"branch_attrs": { + "labels": { "nuc mutations": "T13827C,G18756T" }, +"mutations": { "nuc" : [ "T13827C","G18756T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.95"}}, +"children":[ { +"name": "England/ALDP-68EFBC/2020|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "C23430T" }, +"mutations": { "nuc" : [ "C23430T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-91F278/2020|20-06-23", +"branch_attrs": { + "labels": { "nuc mutations": "A5695G,C10116T,C23855T" }, +"mutations": { "nuc" : [ "A5695G","C10116T","C23855T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "494", +"branch_attrs": { + "labels": { "nuc mutations": "C4113T,G21974C,C23191T" }, +"mutations": { "nuc" : [ "C4113T","G21974C","C23191T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.186"}}, +"children":[ { +"name": "USA/GA-CDC-6435/2020|MT967964.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1347T,C6190T,C11758T,C12741T" }, +"mutations": { "nuc" : [ "C1347T","C6190T","C11758T","C12741T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-1202/2020|MW035373.1|20-08-06", +"branch_attrs": { + "labels": { "nuc mutations": "C23910T,G27327T,G28690T" }, +"mutations": { "nuc" : [ "C23910T","G27327T","G28690T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "495", +"branch_attrs": { + "labels": { "nuc mutations": "G3230A,T24076A" }, +"mutations": { "nuc" : [ "G3230A","T24076A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.275"}}, +"children":[ { +"name": "England/PHEC-16F19/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C4570A" }, +"mutations": { "nuc" : [ "C4570A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/GSTT-265D4DF/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "496", +"branch_attrs": { + "labels": { "nuc mutations": "C4391A,C15848T,T19893C" }, +"mutations": { "nuc" : [ "C4391A","C15848T","T19893C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.253"}}, +"children":[ { +"name": "England/LIVE-A2765/2020|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "C16084T,C19185T,C26625T" }, +"mutations": { "nuc" : [ "C16084T","C19185T","C26625T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-658C87/2020|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "C1263T,G19254T,C25889T" }, +"mutations": { "nuc" : [ "C1263T","G19254T","C25889T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "497", +"branch_attrs": { + "labels": { "nuc mutations": "C1420T" }, +"mutations": { "nuc" : [ "C1420T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.83"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-1038B9/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "G25947C,C28312T" }, +"mutations": { "nuc" : [ "G25947C","C28312T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-16"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-FCE85/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C12747T,G18028T" }, +"mutations": { "nuc" : [ "C12747T","G18028T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-28"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "498", +"branch_attrs": { + "labels": { "nuc mutations": "C19366T" }, +"mutations": { "nuc" : [ "C19366T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.81"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FBB52/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C26270T" }, +"mutations": { "nuc" : [ "C26270T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-13"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-FAC7E/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C6114T" }, +"mutations": { "nuc" : [ "C6114T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-15"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "499", +"branch_attrs": { + "labels": { "nuc mutations": "G10097A,C23731T" }, +"mutations": { "nuc" : [ "G10097A","C23731T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.1"}}, +"children":[ { +"name": "England/NORT-283BE4/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "C24026T" }, +"mutations": { "nuc" : [ "C24026T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "500", +"branch_attrs": { + "labels": { "nuc mutations": "C4002T,C13536T" }, +"mutations": { "nuc" : [ "C4002T","C13536T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": "20D"}, "MAT_Clade_1": {"value": "C.6"}}, +"children":[ { +"name": "England/CAMB-81070/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C4698T" }, +"mutations": { "nuc" : [ "C4698T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "501", +"branch_attrs": { + "labels": { "nuc mutations": "T28110C" }, +"mutations": { "nuc" : [ "T28110C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/CAMB-72B44/2020|20-03-22", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-822D3/2020|20-04-12", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "502", +"branch_attrs": { + "labels": { "nuc mutations": "G2447T,G22199T" }, +"mutations": { "nuc" : [ "G2447T","G22199T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.3"}}, +"children":[ { +"name": "England/ALDP-94DD07/2020|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "G3164T,C7528T,G20569T,C29625T" }, +"mutations": { "nuc" : [ "G3164T","C7528T","G20569T","C29625T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-49EC3C/2020|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "G29392T,C29541T" }, +"mutations": { "nuc" : [ "G29392T","C29541T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "503", +"branch_attrs": { + "labels": { "nuc mutations": "G29179T" }, +"mutations": { "nuc" : [ "G29179T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.14"}}, +"children":[ { +"name": "PER/covper024/2020|MW030255.1|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C17436T,G27478T" }, +"mutations": { "nuc" : [ "C17436T","G27478T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-04"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G,G27160T" }, +"mutations": { "nuc" : [ "A10323G","G27160T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-08"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "504", +"branch_attrs": { + "labels": { "nuc mutations": "A21131G" }, +"mutations": { "nuc" : [ "A21131G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.13"}}, +"children":[ { +"name": "PER/covper011/2020|MW030242.1|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C3768T,C14265T,G17721T,C27213T,C27513T" }, +"mutations": { "nuc" : [ "C3768T","C14265T","G17721T","C27213T","C27513T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-04"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/covper040/2020|MW030271.1|20-05-05", +"branch_attrs": { + "labels": { "nuc mutations": "C12854T,G20752T" }, +"mutations": { "nuc" : [ "C12854T","G20752T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-05"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "505", +"branch_attrs": { + "labels": { "nuc mutations": "C18747T" }, +"mutations": { "nuc" : [ "C18747T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.1"}}, +"children":[ { +"name": "England/MILK-B1553B/2020|20-10-23", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A" }, +"mutations": { "nuc" : [ "C2509T","G5029C","C6781T","G17027T","G20164A","G22992A","A23233G","T23629G","G25606T","G28048A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-66F889/2020|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "G14547A,G14869A,A24879G,C29421T" }, +"mutations": { "nuc" : [ "G14547A","G14869A","A24879G","C29421T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "506", +"branch_attrs": { + "labels": { "nuc mutations": "G3302A,C9693T,C11758T,C12789T,T22917G,G29422T" }, +"mutations": { "nuc" : [ "G3302A","C9693T","C11758T","C12789T","T22917G","G29422T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.16"}}, +"children":[ { +"name": "USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31", +"branch_attrs": { + "labels": { "nuc mutations": "A235C,T1921C,C22522T,C29259T" }, +"mutations": { "nuc" : [ "A235C","T1921C","C22522T","C29259T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "21-01-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LOND-12F65DC/2021|21-01-19", +"branch_attrs": { + "labels": { "nuc mutations": "G8591T,G15906T,A18594G,G23868T,G25906T,C26060T,G28079A,T28124C,T28723C,G29260T,G29543T" }, +"mutations": { "nuc" : [ "G8591T","G15906T","A18594G","G23868T","G25906T","C26060T","G28079A","T28124C","T28723C","G29260T","G29543T" ] } + }, +"node_attrs": { "div": 28, "date": {"value": "21-01-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "507", +"branch_attrs": { + "labels": { "nuc mutations": "G2995T,T4871C,C6449T,C10252T,C19366T,T27808C" }, +"mutations": { "nuc" : [ "G2995T","T4871C","C6449T","C10252T","C19366T","T27808C" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.5"}}, +"children":[ { +"name": "Switzerland/310500/2020|LR898805.1|20-10-08", +"branch_attrs": { + "labels": { "nuc mutations": "C9286T,G18210T,C21306T,G28541T" }, +"mutations": { "nuc" : [ "C9286T","G18210T","C21306T","G28541T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-08"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/300433/2020|LR898634.1|20-09-29", +"branch_attrs": { + "labels": { "nuc mutations": "G27382T" }, +"mutations": { "nuc" : [ "G27382T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-29"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "508", +"branch_attrs": { + "labels": { "nuc mutations": "T8323C,C10369T,T14345C,T15437C,G18292T,C25624T" }, +"mutations": { "nuc" : [ "T8323C","C10369T","T14345C","T15437C","G18292T","C25624T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.2"}}, +"children":[ { +"name": "England/QEUH-96BAA2/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "G1042T,C8895T,G25250T" }, +"mutations": { "nuc" : [ "G1042T","C8895T","G25250T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-08-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/ALDP-B19FFD/2020|20-11-01", +"branch_attrs": { + "labels": { "nuc mutations": "G922T,T10369C,A23064C,G23608T,C28453T,C29642T" }, +"mutations": { "nuc" : [ "G922T","T10369C","A23064C","G23608T","C28453T","C29642T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-11-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "509", +"branch_attrs": { + "labels": { "nuc mutations": "G24794T" }, +"mutations": { "nuc" : [ "G24794T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.4"}}, +"children":[ { +"name": "SRB/NS19622-16-06/2020|MW327528.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-15"}, "country": {"value": "SRB"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/covper018/2020|MW030249.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "G3755T,G11552T,A28356G" }, +"mutations": { "nuc" : [ "G3755T","G11552T","A28356G" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-03"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "510", +"branch_attrs": { + "labels": { "nuc mutations": "C15656T,C25936T" }, +"mutations": { "nuc" : [ "C15656T","C25936T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.298"}}, +"children":[ { +"name": "DK/AD3_Farm1/2020|MT919525.1|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "A5421G,A22920T" }, +"mutations": { "nuc" : [ "A5421G","A22920T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-14"}, "country": {"value": "DK"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "DK/KL14_Farm1/2020|MT919536.1|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-17"}, "country": {"value": "DK"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "511", +"branch_attrs": { + "labels": { "nuc mutations": "A1630C,C27679T" }, +"mutations": { "nuc" : [ "A1630C","C27679T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.270"}}, +"children":[ { +"name": "England/BRIS-123EDF/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T" }, +"mutations": { "nuc" : [ "C2509T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-123F09/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C9118T" }, +"mutations": { "nuc" : [ "C9118T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "512", +"branch_attrs": { + "labels": { "nuc mutations": "C3373A,C15960T" }, +"mutations": { "nuc" : [ "C3373A","C15960T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.247"}}, +"children":[ { +"name": "EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T" }, +"mutations": { "nuc" : [ "C3045T","A11305G","G16110A","C16428T","C18788T","G21786T","T22369C","A29521T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-20"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "513", +"branch_attrs": { + "labels": { "nuc mutations": "T15960C" }, +"mutations": { "nuc" : [ "T15960C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.292"}}, +"children":[ { +"name": "514", +"branch_attrs": { + "labels": { "nuc mutations": "C2706T,G9968T,G16647T,T23480G" }, +"mutations": { "nuc" : [ "C2706T","G9968T","G16647T","T23480G" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-02"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-02"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "Scotland/CVR41/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "C823T" }, +"mutations": { "nuc" : [ "C823T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "515", +"branch_attrs": { + "labels": { "nuc mutations": "G1820A,C6883T,G21724A,G28003C" }, +"mutations": { "nuc" : [ "G1820A","C6883T","G21724A","G28003C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.294"}}, +"children":[ { +"name": "516", +"branch_attrs": { + "labels": { "nuc mutations": "C12249T" }, +"mutations": { "nuc" : [ "C12249T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/CAMC-AEACFF/2020|20-10-25", +"branch_attrs": { + "labels": { "nuc mutations": "C3141T,C4683T,C8683T,C17690T,T19935C,C24130T,A27979G" }, +"mutations": { "nuc" : [ "C3141T","C4683T","C8683T","C17690T","T19935C","C24130T","A27979G" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "517", +"branch_attrs": { + "labels": { "nuc mutations": "G3431T,T25577C,C25626T,C27002T" }, +"mutations": { "nuc" : [ "G3431T","T25577C","C25626T","C27002T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "M.1"}}, +"children":[ { +"name": "England/PHEC-149FA3/2020|20-11-20", +"branch_attrs": { + "labels": { "nuc mutations": "G3433A,G8084A,C11941T,C18555T,A26174C" }, +"mutations": { "nuc" : [ "G3433A","G8084A","C11941T","C18555T","A26174C" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-11-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-C9332B/2020|20-12-17", +"branch_attrs": { + "labels": { "nuc mutations": "G9314A,C13605T,G14490A" }, +"mutations": { "nuc" : [ "G9314A","C13605T","G14490A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/MILK-9A699F/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C1457T,G3286A,C8290T,C8626T,C9298T,C24378T,G26648A,C28657T" }, +"mutations": { "nuc" : [ "C1457T","G3286A","C8290T","C8626T","C9298T","C24378T","G26648A","C28657T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "518", +"branch_attrs": { + "labels": { "nuc mutations": "C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T" }, +"mutations": { "nuc" : [ "C643T","C4897T","C4898T","C9561T","G22349T","C25904T","C27920T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.293"}}, +"children":[ { +"name": "England/CAMC-C3E586/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "C3736T,C6336T,G19735T,G23611T,C26735T,C26858T" }, +"mutations": { "nuc" : [ "C3736T","C6336T","G19735T","G23611T","C26735T","C26858T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-DE5550/2020|20-12-29", +"branch_attrs": { + "labels": { "nuc mutations": "G6320T,C10582T,C12194T,C25603T" }, +"mutations": { "nuc" : [ "G6320T","C10582T","C12194T","C25603T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "519", +"branch_attrs": { + "labels": { "nuc mutations": "C1437T,G29745T" }, +"mutations": { "nuc" : [ "C1437T","G29745T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.171"}}, +"children":[ { +"name": "England/ALDP-9ECEAD/2020|20-05-05", +"branch_attrs": { + "labels": { "nuc mutations": "C3874T,A6659G,T8008C,C27944T" }, +"mutations": { "nuc" : [ "C3874T","A6659G","T8008C","C27944T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12DC53/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "G4720A,A4928T" }, +"mutations": { "nuc" : [ "G4720A","A4928T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "520", +"branch_attrs": { + "labels": { "nuc mutations": "C2062T,C5184A,C13887T,C18687T,C23248T" }, +"mutations": { "nuc" : [ "C2062T","C5184A","C13887T","C18687T","C23248T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.170"}}, +"children":[ { +"name": "Scotland/QEUH-7B078B/2020|20-07-19", +"branch_attrs": { + "labels": { "nuc mutations": "G14055T,C19269T" }, +"mutations": { "nuc" : [ "G14055T","C19269T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-19"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-993EA5/2020|20-08-22", +"branch_attrs": { + "labels": { "nuc mutations": "C10252T,C16733T,G25595T" }, +"mutations": { "nuc" : [ "C10252T","C16733T","G25595T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "521", +"branch_attrs": { + "labels": { "nuc mutations": "C313T" }, +"mutations": { "nuc" : [ "C313T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.114"}}, +"children":[ { +"name": "England/BRIS-124C89/2020|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "T313C,C29119T,C29585T" }, +"mutations": { "nuc" : [ "T313C","C29119T","C29585T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-6243/2020|MT412316.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C3096T" }, +"mutations": { "nuc" : [ "C3096T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "522", +"branch_attrs": { + "labels": { "nuc mutations": "G4510A" }, +"mutations": { "nuc" : [ "G4510A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "523", +"branch_attrs": { + "labels": { "nuc mutations": "G15438T,G25785T" }, +"mutations": { "nuc" : [ "G15438T","G25785T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.50"}}, +"children":[ { +"name": "England/ALDP-A525BB/2020|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "C1758T,G18337T,G24757T,G28903T,G29260T" }, +"mutations": { "nuc" : [ "C1758T","G18337T","G24757T","G28903T","G29260T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ISR/NH_M2_0614/2020|MW194121.1|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "C541T,C1528T,C2836T,C8905T,A23125T,G28851T" }, +"mutations": { "nuc" : [ "C541T","C1528T","C2836T","C8905T","A23125T","G28851T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-14"}, "country": {"value": "ISR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "524", +"branch_attrs": { + "labels": { "nuc mutations": "G19480A" }, +"mutations": { "nuc" : [ "G19480A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.209"}}, +"children":[ { +"name": "England/MILK-A45AF8/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "G18985T,C21844T,T23084C,C25318T,G27358T" }, +"mutations": { "nuc" : [ "G18985T","C21844T","T23084C","C25318T","G27358T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-A613BF/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T" }, +"mutations": { "nuc" : [ "C1912T","C3619T","C4158T","G17259T","G21193T","C21846T","C25584T","C26060T","G27008T","G27827T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "525", +"branch_attrs": { + "labels": { "nuc mutations": "C9286T" }, +"mutations": { "nuc" : [ "C9286T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "526", +"branch_attrs": { + "labels": { "nuc mutations": "C19763T" }, +"mutations": { "nuc" : [ "C19763T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.47"}}, +"children":[ { +"name": "Switzerland/180039/2020|LR861669.1|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C10252T,C14178T" }, +"mutations": { "nuc" : [ "C1912T","C10252T","C14178T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-01"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/220022/2020|LR882244.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "C2062T,G6877T,T8082C,C13945T,C22687T" }, +"mutations": { "nuc" : [ "C2062T","G6877T","T8082C","C13945T","C22687T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-27"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "527", +"branch_attrs": { + "labels": { "nuc mutations": "T4346C,C10376T,C14708T,C28725T,G29692T" }, +"mutations": { "nuc" : [ "T4346C","C10376T","C14708T","C28725T","G29692T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.284"}}, +"children":[ { +"name": "Japan/TKYE627000_2020/2020|LC593811.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "C7728T" }, +"mutations": { "nuc" : [ "C7728T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Japan/TKYE624705_2020/2020|LC593810.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "A158G,C706T,C5974T,A26459G" }, +"mutations": { "nuc" : [ "A158G","C706T","C5974T","A26459G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "528", +"branch_attrs": { + "labels": { "nuc mutations": "G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G" }, +"mutations": { "nuc" : [ "G10886A","G17278T","C18032T","G18105T","G18662C","C23625T","A25910G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.303"}}, +"children":[ { +"name": "England/QEUH-962E81/2020|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "G24755T,A27973G" }, +"mutations": { "nuc" : [ "G24755T","A27973G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96E605/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C2841T" }, +"mutations": { "nuc" : [ "C2841T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "529", +"branch_attrs": { + "labels": { "nuc mutations": "G28396A" }, +"mutations": { "nuc" : [ "G28396A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.305"}}, +"children":[ { +"name": "England/QEUH-9F9265/2020|20-09-26", +"branch_attrs": { + "labels": { "nuc mutations": "C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T" }, +"mutations": { "nuc" : [ "C10156T","G13459T","G15380T","G16917T","C18252T","T22756C","C27741T","G29759T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-98EE43/2020|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "C2453T,G22918T,G27708T" }, +"mutations": { "nuc" : [ "C2453T","G22918T","G27708T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "530", +"branch_attrs": { + "labels": { "nuc mutations": "G1820A,C6541T" }, +"mutations": { "nuc" : [ "G1820A","C6541T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.215"}}, +"children":[ { +"name": "England/NORW-E8709/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "A9737G,A29242G" }, +"mutations": { "nuc" : [ "A9737G","A29242G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A3740G,C12786T,C26333T" }, +"mutations": { "nuc" : [ "A3740G","C12786T","C26333T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-06"}, "country": {"value": "UnitedKingdom"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "531", +"branch_attrs": { + "labels": { "nuc mutations": "A11348G" }, +"mutations": { "nuc" : [ "A11348G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.113"}}, +"children":[ { +"name": "USA/ME-HETL-J0061/2020|MT886346.1|20-03-20", +"branch_attrs": { + "labels": { "nuc mutations": "G28690T" }, +"mutations": { "nuc" : [ "G28690T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-1599/2020|MW190335.1|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "G2534T,G9130A,G29422A" }, +"mutations": { "nuc" : [ "G2534T","G9130A","G29422A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "532", +"branch_attrs": { + "labels": { "nuc mutations": "C5700A" }, +"mutations": { "nuc" : [ "C5700A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.281"}}, +"children":[ { +"name": "England/QEUH-9600C9/2020|20-08-05", +"branch_attrs": { + "labels": { "nuc mutations": "C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T" }, +"mutations": { "nuc" : [ "C2113T","C6696T","G11761T","C14724T","C22450T","C25791T","C26894T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B92F8/2020|20-09-07", +"branch_attrs": { + "labels": { "nuc mutations": "C245T,G3250T,C11020T,C11109T,G16377T,C27874T" }, +"mutations": { "nuc" : [ "C245T","G3250T","C11020T","C11109T","G16377T","C27874T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "533", +"branch_attrs": { + "labels": { "nuc mutations": "T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T" }, +"mutations": { "nuc" : [ "T682C","C900T","G3259T","C4048T","C14937T","C17802T","C23604A","C24130T","C25721T","G25767T","G28903T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.179"}}, +"children":[ { +"name": "IND/GBRC455b/2020|MW600453.1|20-12-24", +"branch_attrs": { + "labels": { "nuc mutations": "G160T,T313C" }, +"mutations": { "nuc" : [ "G160T","T313C" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-24"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC455a/2020|MW600436.1|20-12-24", +"branch_attrs": { + "labels": { "nuc mutations": "G160T" }, +"mutations": { "nuc" : [ "G160T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-24"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "534", +"branch_attrs": { + "labels": { "nuc mutations": "C823T" }, +"mutations": { "nuc" : [ "C823T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.285"}}, +"children":[ { +"name": "USA/FL-BPHL-0905/2020|MT966149.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "A8565C,A28847T" }, +"mutations": { "nuc" : [ "A8565C","A28847T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-0303/2020|MT757111.1|20-05-30", +"branch_attrs": { + "labels": { "nuc mutations": "A11023G" }, +"mutations": { "nuc" : [ "A11023G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "535", +"branch_attrs": { + "labels": { "nuc mutations": "C27128T" }, +"mutations": { "nuc" : [ "C27128T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.213"}}, +"children":[ { +"name": "England/CAMB-76490/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "G8171A,A16541G,A17730G" }, +"mutations": { "nuc" : [ "G8171A","A16541G","A17730G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7CBD1/2020|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "G960T,G26589C" }, +"mutations": { "nuc" : [ "G960T","G26589C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "536", +"branch_attrs": { + "labels": { "nuc mutations": "C8917T,C18167T,G21518T,G28975T" }, +"mutations": { "nuc" : [ "C8917T","C18167T","G21518T","G28975T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.214"}}, +"children":[ { +"name": "Japan/TKYE630414_2020/2020|LC593818.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "G27604A,C29679T" }, +"mutations": { "nuc" : [ "G27604A","C29679T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Japan/TKYE622411_2020/2020|LC593808.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G29773T" }, +"mutations": { "nuc" : [ "G29773T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "537", +"branch_attrs": { + "labels": { "nuc mutations": "G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T" }, +"mutations": { "nuc" : [ "G3056A","G11221T","G12514T","G17259T","C19089T","G23120T","A28338G","G29690T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.272"}}, +"children":[ { +"name": "England/MILK-A18C8F/2020|20-10-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-C3C1FD/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "C19264T,T22672C,A23869G,T28340C" }, +"mutations": { "nuc" : [ "C19264T","T22672C","A23869G","T28340C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "538", +"branch_attrs": { + "labels": { "nuc mutations": "G22627A,G28628T" }, +"mutations": { "nuc" : [ "G22627A","G28628T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.49"}}, +"children":[ { +"name": "Wales/PHWC-15E0B7/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1063T,G16117T,C27849T" }, +"mutations": { "nuc" : [ "C1063T","G16117T","C27849T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-30957/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "T11654C" }, +"mutations": { "nuc" : [ "T11654C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-08"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "539", +"branch_attrs": { + "labels": { "nuc mutations": "G25563C,G28178T" }, +"mutations": { "nuc" : [ "G25563C","G28178T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.283"}}, +"children":[ { +"name": "Japan/TKYVE11964_2020/2020|LC556322.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "G20134T,C24621A,G28300T" }, +"mutations": { "nuc" : [ "G20134T","C24621A","G28300T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "LC573289.2|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "G2305T" }, +"mutations": { "nuc" : [ "G2305T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06"}, "country": {"value": "LC573289.2|20-06"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "540", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,C14724T,G24262T,G27703T" }, +"mutations": { "nuc" : [ "C2509T","C14724T","G24262T","G27703T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.181"}}, +"children":[ { +"name": "TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "G5015A" }, +"mutations": { "nuc" : [ "G5015A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-15"}, "country": {"value": "TUR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "G4148T,G5015A,C13620T,G28166A" }, +"mutations": { "nuc" : [ "G4148T","G5015A","C13620T","G28166A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-15"}, "country": {"value": "TUR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "541", +"branch_attrs": { + "labels": { "nuc mutations": "T27645A,G27666A" }, +"mutations": { "nuc" : [ "T27645A","G27666A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.139"}}, +"children":[ { +"name": "USA/CA-CZB-4049/2020|MW134382.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5979T,G29648T" }, +"mutations": { "nuc" : [ "C5979T","G29648T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3294/2020|MW134115.1|20-07-20", +"branch_attrs": { + "labels": { "nuc mutations": "T14127C,T14745G,G19180T,G22154T" }, +"mutations": { "nuc" : [ "T14127C","T14745G","G19180T","G22154T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "542", +"branch_attrs": { + "labels": { "nuc mutations": "T29148C" }, +"mutations": { "nuc" : [ "T29148C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.314"}}, +"children":[ { +"name": "543", +"branch_attrs": { + "labels": { "nuc mutations": "G25793T,T27299C" }, +"mutations": { "nuc" : [ "G25793T","T27299C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.33"}}, +"children":[ { +"name": "544", +"branch_attrs": { + "labels": { "nuc mutations": "T25793G" }, +"mutations": { "nuc" : [ "T25793G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "C28969T" }, +"mutations": { "nuc" : [ "C28969T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-08"}, "country": {"value": "BRA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-114/2020|MT706234.1|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "A14330G,A27989G" }, +"mutations": { "nuc" : [ "A14330G","A27989G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-03-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "545", +"branch_attrs": { + "labels": { "nuc mutations": "C25916T,C29769T" }, +"mutations": { "nuc" : [ "C25916T","C29769T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "N.1"}}, +"children":[ { +"name": "USA/FL-BPHL-2014/2020|MW286586.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T" }, +"mutations": { "nuc" : [ "C3828T","C4456T","T6055C","G8131T","C13051T","C18647T","G21204T","C28367T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00693/2020|MT520290.1|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "T28360C" }, +"mutations": { "nuc" : [ "T28360C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "546", +"branch_attrs": { + "labels": { "nuc mutations": "A2475G" }, +"mutations": { "nuc" : [ "A2475G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "N.4"}}, +"children":[ { +"name": "CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C14805T" }, +"mutations": { "nuc" : [ "C14805T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C11750T,C18183T,C25731T" }, +"mutations": { "nuc" : [ "C11750T","C18183T","C25731T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-27"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "547", +"branch_attrs": { + "labels": { "nuc mutations": "G26416T" }, +"mutations": { "nuc" : [ "G26416T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "N.3"}}, +"children":[ { +"name": "ARG/Cordoba-2858/2020|MW633904.1|20-09-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2044T,C10626T,C11824T,A22052C,C26645T,C29555T" }, +"mutations": { "nuc" : [ "C2044T","C10626T","C11824T","A22052C","C26645T","C29555T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-14"}, "country": {"value": "ARG"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ARG/Cordoba-1484/2020|MW633909.1|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1663T,G3155T,A4485G,C5493T,G14020T,C27431T" }, +"mutations": { "nuc" : [ "C1663T","G3155T","A4485G","C5493T","G14020T","C27431T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-17"}, "country": {"value": "ARG"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/CAMB-74D5B/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/LOND-D53CF/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G621A" }, +"mutations": { "nuc" : [ "G621A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "548", +"branch_attrs": { + "labels": { "nuc mutations": "G18907T" }, +"mutations": { "nuc" : [ "G18907T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "549", +"branch_attrs": { + "labels": { "nuc mutations": "G18898T" }, +"mutations": { "nuc" : [ "G18898T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.61"}}, +"children":[ { +"name": "USA/CA-CZB-1871/2020|MT750377.1|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "G1323T,T18907G,C21772T" }, +"mutations": { "nuc" : [ "G1323T","T18907G","C21772T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2358/2020|MW036004.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C823T,C1457T,G3304T,A20055G,C22208T,C29095T" }, +"mutations": { "nuc" : [ "C823T","C1457T","G3304T","A20055G","C22208T","C29095T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "550", +"branch_attrs": { + "labels": { "nuc mutations": "C22314T,T24796C" }, +"mutations": { "nuc" : [ "C22314T","T24796C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.249"}}, +"children":[ { +"name": "Wales/PHWC-1645BF/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "C5192T,C12400T,C25710T,C28432T" }, +"mutations": { "nuc" : [ "C5192T","C12400T","C25710T","C28432T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-06"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-33C88/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "G6358A,A14328G,G29736A" }, +"mutations": { "nuc" : [ "G6358A","A14328G","G29736A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-17"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "551", +"branch_attrs": { + "labels": { "nuc mutations": "G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T" }, +"mutations": { "nuc" : [ "G6356A","C7113T","C8991T","T14238C","A18270C","T18989C","C21058T","C23525T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.98"}}, +"children":[ { +"name": "USA/WA-S2724/2020|MT947562.1|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2728/2020|MT947566.1|20-07-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "552", +"branch_attrs": { + "labels": { "nuc mutations": "G26615T" }, +"mutations": { "nuc" : [ "G26615T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.43"}}, +"children":[ { +"name": "Scotland/EDB5196/2020|20-05-18", +"branch_attrs": { + "labels": { "nuc mutations": "C13384T,A18902C,C27644A,A29767C" }, +"mutations": { "nuc" : [ "C13384T","A18902C","C27644A","A29767C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-18"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3185/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C16946T" }, +"mutations": { "nuc" : [ "C16946T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "553", +"branch_attrs": { + "labels": { "nuc mutations": "C17249T,G17722T" }, +"mutations": { "nuc" : [ "C17249T","G17722T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.150"}}, +"children":[ { +"name": "England/BRIS-127363/2020|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,G5572T,G12202T,T16521C" }, +"mutations": { "nuc" : [ "G174T","G5572T","G12202T","T16521C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-127A40/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "G2659T" }, +"mutations": { "nuc" : [ "G2659T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "554", +"branch_attrs": { + "labels": { "nuc mutations": "A10260G,A10880G" }, +"mutations": { "nuc" : [ "A10260G","A10880G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.187"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FB9C1/2020|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "G16197T,C24382T" }, +"mutations": { "nuc" : [ "G16197T","C24382T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-13"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-99DE32/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C2880T,A4044C,C6896T,A8413G,G19086T" }, +"mutations": { "nuc" : [ "C2880T","A4044C","C6896T","A8413G","G19086T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "555", +"branch_attrs": { + "labels": { "nuc mutations": "G2164A" }, +"mutations": { "nuc" : [ "G2164A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.164"}}, +"children":[ { +"name": "England/CAMB-83A9E/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G7761A,C14931T" }, +"mutations": { "nuc" : [ "G7761A","C14931T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/EXET-136ED9/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C8733T" }, +"mutations": { "nuc" : [ "C8733T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "556", +"branch_attrs": { + "labels": { "nuc mutations": "G3896T" }, +"mutations": { "nuc" : [ "G3896T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.200"}}, +"children":[ { +"name": "England/ALDP-955D39/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "G5629T,G19889T,C27673T" }, +"mutations": { "nuc" : [ "G5629T","G19889T","C27673T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/300258/2020|LR898536.1|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "C6701T,C12116T,C14352T,G17334T" }, +"mutations": { "nuc" : [ "C6701T","C12116T","C14352T","G17334T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-01"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "557", +"branch_attrs": { + "labels": { "nuc mutations": "C18713T" }, +"mutations": { "nuc" : [ "C18713T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.137"}}, +"children":[ { +"name": "England/SHEF-D1D3E/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C21618T,C25047T,C29095T,G29747T" }, +"mutations": { "nuc" : [ "C21618T","C25047T","C29095T","G29747T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-CBE43/2020|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "C11396T,C17676T" }, +"mutations": { "nuc" : [ "C11396T","C17676T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "558", +"branch_attrs": { + "labels": { "nuc mutations": "G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T" }, +"mutations": { "nuc" : [ "G625T","C13665T","C15960T","G16741T","C26464T","G29747T","C29750T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.227"}}, +"children":[ { +"name": "England/CAMC-949688/2020|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "T3694C,G20580T" }, +"mutations": { "nuc" : [ "T3694C","G20580T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-C3AED/2020|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "C401T,T1438C" }, +"mutations": { "nuc" : [ "C401T","T1438C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "559", +"branch_attrs": { + "labels": { "nuc mutations": "A8072G" }, +"mutations": { "nuc" : [ "A8072G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.133"}}, +"children":[ { +"name": "England/ALDP-90D6AE/2020|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "A3776G,C21855T,G25166C,C25831T,C26111T,C26195T" }, +"mutations": { "nuc" : [ "A3776G","C21855T","G25166C","C25831T","C26111T","C26195T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "POL/PL_P12/2020|MT511068.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C106T,C8025T" }, +"mutations": { "nuc" : [ "C106T","C8025T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "560", +"branch_attrs": { + "labels": { "nuc mutations": "T3873C,G3880A" }, +"mutations": { "nuc" : [ "T3873C","G3880A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.204"}}, +"children":[ { +"name": "England/MILK-ABBCCA/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "A14144G,T20196C,C23536A" }, +"mutations": { "nuc" : [ "A14144G","T20196C","C23536A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-ACCF27/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C18131T,G26640T" }, +"mutations": { "nuc" : [ "C18131T","G26640T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "561", +"branch_attrs": { + "labels": { "nuc mutations": "C9120T,C18032T,C20233T,G24926T,A27674T,A29350G" }, +"mutations": { "nuc" : [ "C9120T","C18032T","C20233T","G24926T","A27674T","A29350G" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.302"}}, +"children":[ { +"name": "England/QEUH-99923A/2020|20-08-24", +"branch_attrs": { + "labels": { "nuc mutations": "G974A,C7267T" }, +"mutations": { "nuc" : [ "G974A","C7267T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-825C54/2020|20-07-16", +"branch_attrs": { + "labels": { "nuc mutations": "G680A,C14120T" }, +"mutations": { "nuc" : [ "G680A","C14120T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "562", +"branch_attrs": { + "labels": { "nuc mutations": "A20742C" }, +"mutations": { "nuc" : [ "A20742C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.297"}}, +"children":[ { +"name": "England/MILK-9E2BDD/2020|20-09-20", +"branch_attrs": { + "labels": { "nuc mutations": "A9337G,A27086T" }, +"mutations": { "nuc" : [ "A9337G","A27086T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-09-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-1088C3/2020|20-09-13", +"branch_attrs": { + "labels": { "nuc mutations": "C16260T,G25340T,C27684T" }, +"mutations": { "nuc" : [ "C16260T","G25340T","C27684T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-09-13"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "563", +"branch_attrs": { + "labels": { "nuc mutations": "T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T" }, +"mutations": { "nuc" : [ "T505C","G872T","C3261T","T7783C","A15984T","C20946T","C22075T","G25552T","C27945T","G28221T","C29750T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.198"}}, +"children":[ { +"name": "England/MILK-99D755/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "T4303C,C25553T,G25599T" }, +"mutations": { "nuc" : [ "T4303C","C25553T","G25599T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-99D764/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G20125A,G22484T" }, +"mutations": { "nuc" : [ "G20125A","G22484T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "564", +"branch_attrs": { + "labels": { "nuc mutations": "G569A,C5482T,G17944T,C18747T,A22182G" }, +"mutations": { "nuc" : [ "G569A","C5482T","G17944T","C18747T","A22182G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.97"}}, +"children":[ { +"name": "England/ALDP-907D09/2020|20-06-22", +"branch_attrs": { + "labels": { "nuc mutations": "C20320T" }, +"mutations": { "nuc" : [ "C20320T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-85E3E4/2020|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "G2144T" }, +"mutations": { "nuc" : [ "G2144T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "565", +"branch_attrs": { + "labels": { "nuc mutations": "A2641G,C3622T,C25844T,C28087T" }, +"mutations": { "nuc" : [ "A2641G","C3622T","C25844T","C28087T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.256"}}, +"children":[ { +"name": "England/MILK-95862C/2020|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "G28557T" }, +"mutations": { "nuc" : [ "G28557T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-94EF88/2020|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "C2106T,C12073T,C14676T,T20989C" }, +"mutations": { "nuc" : [ "C2106T","C12073T","C14676T","T20989C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "566", +"branch_attrs": { + "labels": { "nuc mutations": "G21624T" }, +"mutations": { "nuc" : [ "G21624T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.237"}}, +"children":[ { +"name": "England/PHEC-219E0/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "T23227C" }, +"mutations": { "nuc" : [ "T23227C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LEED-2AA59E/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C28969T" }, +"mutations": { "nuc" : [ "C28969T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "567", +"branch_attrs": { + "labels": { "nuc mutations": "T5465C,G24102A" }, +"mutations": { "nuc" : [ "T5465C","G24102A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.264"}}, +"children":[ { +"name": "Wales/PHWC-16578B/2020|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "A489G,G6387A,C19185T,A25800T,A25801T" }, +"mutations": { "nuc" : [ "A489G","G6387A","C19185T","A25800T","A25801T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-07"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-166104/2020|20-05-15", +"branch_attrs": { + "labels": { "nuc mutations": "T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T" }, +"mutations": { "nuc" : [ "T6025C","A9361T","G10255T","C13264T","G17572T","G19398A","G28703T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-15"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "568", +"branch_attrs": { + "labels": { "nuc mutations": "G18859T" }, +"mutations": { "nuc" : [ "G18859T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.279"}}, +"children":[ { +"name": "England/BRIS-125D67/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6347T" }, +"mutations": { "nuc" : [ "C6347T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12C841/2020|20-05-12", +"branch_attrs": { + "labels": { "nuc mutations": "A14691G,T19473C,T22325C" }, +"mutations": { "nuc" : [ "A14691G","T19473C","T22325C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "569", +"branch_attrs": { + "labels": { "nuc mutations": "G1874T,C8683T,C28093T" }, +"mutations": { "nuc" : [ "G1874T","C8683T","C28093T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.149"}}, +"children":[ { +"name": "England/ALDP-94D8F7/2020|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "A9997C" }, +"mutations": { "nuc" : [ "A9997C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NOTT-111BFB/2020|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "G26426A" }, +"mutations": { "nuc" : [ "G26426A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "570", +"branch_attrs": { + "labels": { "nuc mutations": "A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C" }, +"mutations": { "nuc" : [ "A2641G","C9803A","A10786G","C10833T","C18687T","C25844T","T27811C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.86"}}, +"children":[ { +"name": "England/ALDP-95A754/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "T20764C" }, +"mutations": { "nuc" : [ "T20764C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-95CEA8/2020|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "C14931T" }, +"mutations": { "nuc" : [ "C14931T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "571", +"branch_attrs": { + "labels": { "nuc mutations": "T29464C" }, +"mutations": { "nuc" : [ "T29464C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.115"}}, +"children":[ { +"name": "572", +"branch_attrs": { + "labels": { "nuc mutations": "G26918T" }, +"mutations": { "nuc" : [ "G26918T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.235"}}, +"children":[ { +"name": "England/MILK-8664D7/2020|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "C29733T" }, +"mutations": { "nuc" : [ "C29733T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-993300/2020|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "C8290T,C19367T,C23525T" }, +"mutations": { "nuc" : [ "C8290T","C19367T","C23525T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "573", +"branch_attrs": { + "labels": { "nuc mutations": "C7843T,G15438T,C25207T,C28453T" }, +"mutations": { "nuc" : [ "C7843T","G15438T","C25207T","C28453T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.146"}}, +"children":[ { +"name": "England/CAMC-947392/2020|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "T25949C" }, +"mutations": { "nuc" : [ "T25949C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-977469/2020|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C2536T,T7843C,C8318A,T26160C" }, +"mutations": { "nuc" : [ "C2536T","T7843C","C8318A","T26160C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/MILK-629D13/2020|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "G1820A,C11003T,T13417C,G22409T,C25896T,G25963A" }, +"mutations": { "nuc" : [ "G1820A","C11003T","T13417C","G22409T","C25896T","G25963A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "574", +"branch_attrs": { + "labels": { "nuc mutations": "G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G" }, +"mutations": { "nuc" : [ "G4181T","G5326T","C5694T","C5812T","C6573T","C16293T","G22021T","T23633G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.234"}}, +"children":[ { +"name": "England/PORT-2F5752/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C18329T,G20062T,C23185T" }, +"mutations": { "nuc" : [ "C18329T","G20062T","C23185T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96A4C3/2020|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "G3403T,C5691T" }, +"mutations": { "nuc" : [ "G3403T","C5691T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "575", +"branch_attrs": { + "labels": { "nuc mutations": "A10948G" }, +"mutations": { "nuc" : [ "A10948G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "576", +"branch_attrs": { + "labels": { "nuc mutations": "T9172C,G26730T" }, +"mutations": { "nuc" : [ "T9172C","G26730T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.207"}}, +"children":[ { +"name": "USA/VA-DCLS-1073/2020|MT981458.1|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "T27846C,C29171T" }, +"mutations": { "nuc" : [ "T27846C","C29171T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-0120/2020|MT482111.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "C10818T,C21998T" }, +"mutations": { "nuc" : [ "C10818T","C21998T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "577", +"branch_attrs": { + "labels": { "nuc mutations": "C6312A" }, +"mutations": { "nuc" : [ "C6312A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.41"}}, +"children":[ { +"name": "Wales/PHWC-162751/2020|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "G18538T,A20136G" }, +"mutations": { "nuc" : [ "G18538T","A20136G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-27"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-497D12/2020|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "T3334A,A6375G,G24926T,C25665T" }, +"mutations": { "nuc" : [ "T3334A","A6375G","G24926T","C25665T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "578", +"branch_attrs": { + "labels": { "nuc mutations": "G20931A" }, +"mutations": { "nuc" : [ "G20931A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.173"}}, +"children":[ { +"name": "England/SHEF-C13B7/2020|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "G10870T,C15315T" }, +"mutations": { "nuc" : [ "G10870T","C15315T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-10B2E79/2020|20-05-16", +"branch_attrs": { + "labels": { "nuc mutations": "A9272C,G26416T" }, +"mutations": { "nuc" : [ "A9272C","G26416T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "579", +"branch_attrs": { + "labels": { "nuc mutations": "C6582T" }, +"mutations": { "nuc" : [ "C6582T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.134"}}, +"children":[ { +"name": "England/OXON-AEF9E/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C140T,T6582A" }, +"mutations": { "nuc" : [ "C140T","T6582A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-162E7A/2020|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "C5497T" }, +"mutations": { "nuc" : [ "C5497T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-19"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "580", +"branch_attrs": { + "labels": { "nuc mutations": "C12488T,C25528T,G27084A" }, +"mutations": { "nuc" : [ "C12488T","C25528T","G27084A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.287"}}, +"children":[ { +"name": "USA/WI-UW-982/2020|MT846668.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "G17964T,G22801T" }, +"mutations": { "nuc" : [ "G17964T","G22801T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "A22108G,C28344T" }, +"mutations": { "nuc" : [ "A22108G","C28344T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "581", +"branch_attrs": { + "labels": { "nuc mutations": "A25505C" }, +"mutations": { "nuc" : [ "A25505C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.231"}}, +"children":[ { +"name": "USA/FL-QDX-228/2020|MT806770.1|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "G675T,C4456T,A21625G" }, +"mutations": { "nuc" : [ "G675T","C4456T","A21625G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-0920/2020|MT929088.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "C8664A,G8851A,C19983T,G29755T" }, +"mutations": { "nuc" : [ "C8664A","G8851A","C19983T","G29755T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "582", +"branch_attrs": { + "labels": { "nuc mutations": "C21637T,A28169G" }, +"mutations": { "nuc" : [ "C21637T","A28169G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.37"}}, +"children":[ { +"name": "England/ALDP-71D072/2020|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "T26156C" }, +"mutations": { "nuc" : [ "T26156C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9573DB/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "T9292C,C21910T" }, +"mutations": { "nuc" : [ "T9292C","C21910T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "583", +"branch_attrs": { + "labels": { "nuc mutations": "G25617T" }, +"mutations": { "nuc" : [ "G25617T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.151"}}, +"children":[ { +"name": "England/ALDP-954C6A/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G27857T" }, +"mutations": { "nuc" : [ "G27857T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A524EB/2020|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "C3099T,C17678T,G19816A,C25728T" }, +"mutations": { "nuc" : [ "C3099T","C17678T","G19816A","C25728T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "584", +"branch_attrs": { + "labels": { "nuc mutations": "G1590T,A11120G" }, +"mutations": { "nuc" : [ "G1590T","A11120G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.308"}}, +"children":[ { +"name": "England/ALDP-9D9104/2020|20-09-18", +"branch_attrs": { + "labels": { "nuc mutations": "C2462A,C10615T,G27047T" }, +"mutations": { "nuc" : [ "C2462A","C10615T","G27047T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-A40F67/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "A12529G" }, +"mutations": { "nuc" : [ "A12529G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "585", +"branch_attrs": { + "labels": { "nuc mutations": "G11230T,G11401T,T24088C" }, +"mutations": { "nuc" : [ "G11230T","G11401T","T24088C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.311"}}, +"children":[ { +"name": "Scotland/QEUH-A00DF0/2020|20-10-02", +"branch_attrs": { + "labels": { "nuc mutations": "A11546G,C29730G" }, +"mutations": { "nuc" : [ "A11546G","C29730G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-02"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9CC5BD/2020|20-09-15", +"branch_attrs": { + "labels": { "nuc mutations": "C11224T,G28307C" }, +"mutations": { "nuc" : [ "C11224T","G28307C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "586", +"branch_attrs": { + "labels": { "nuc mutations": "C835T" }, +"mutations": { "nuc" : [ "C835T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.309"}}, +"children":[ { +"name": "England/QEUH-9B6EAC/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "A29700G" }, +"mutations": { "nuc" : [ "A29700G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-2A4CAE/2020|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "C27945T" }, +"mutations": { "nuc" : [ "C27945T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-09-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "587", +"branch_attrs": { + "labels": { "nuc mutations": "A6900G" }, +"mutations": { "nuc" : [ "A6900G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.310"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FB3A5/2020|20-08-29", +"branch_attrs": { + "labels": { "nuc mutations": "A3801G,C26985T" }, +"mutations": { "nuc" : [ "A3801G","C26985T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-29"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-FB369/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G25456T" }, +"mutations": { "nuc" : [ "G25456T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-31"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "588", +"branch_attrs": { + "labels": { "nuc mutations": "C2638T" }, +"mutations": { "nuc" : [ "C2638T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.59"}}, +"children":[ { +"name": "Wales/ALDP-6C3E72/2020|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "C13329T,C29675T" }, +"mutations": { "nuc" : [ "C13329T","C29675T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-5A15D0/2020|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "G6589A,A22528G" }, +"mutations": { "nuc" : [ "G6589A","A22528G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "589", +"branch_attrs": { + "labels": { "nuc mutations": "G21724T" }, +"mutations": { "nuc" : [ "G21724T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "590", +"branch_attrs": { + "labels": { "nuc mutations": "G11230T,G23587C" }, +"mutations": { "nuc" : [ "G11230T","G23587C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.260"}}, +"children":[ { +"name": "England/LEED-2AA4EC/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C22326T,C27128T" }, +"mutations": { "nuc" : [ "C22326T","C27128T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LEED-2AA394/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C20941T" }, +"mutations": { "nuc" : [ "C20941T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "591", +"branch_attrs": { + "labels": { "nuc mutations": "T7792C" }, +"mutations": { "nuc" : [ "T7792C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.199"}}, +"children":[ { +"name": "England/BRIS-1854318/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C4780T,G22468T" }, +"mutations": { "nuc" : [ "C4780T","G22468T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12E6FA/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C14676T,C17119T" }, +"mutations": { "nuc" : [ "C14676T","C17119T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "592", +"branch_attrs": { + "labels": { "nuc mutations": "G17302T,C25046T" }, +"mutations": { "nuc" : [ "G17302T","C25046T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.259"}}, +"children":[ { +"name": "England/WSFT-25C13CB/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PORT-2F5D9C/2020|20-06-05", +"branch_attrs": { + "labels": { "nuc mutations": "A5277G" }, +"mutations": { "nuc" : [ "A5277G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "593", +"branch_attrs": { + "labels": { "nuc mutations": "C222T,C21780T" }, +"mutations": { "nuc" : [ "C222T","C21780T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.16"}}, +"children":[ { +"name": "Wales/PHWC-16881C/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C19602T,G29779A" }, +"mutations": { "nuc" : [ "C19602T","G29779A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-21"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-3612C/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C7932T,C8964T,C13274T,C14097T" }, +"mutations": { "nuc" : [ "C7932T","C8964T","C13274T","C14097T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-28"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "594", +"branch_attrs": { + "labels": { "nuc mutations": "C20474T" }, +"mutations": { "nuc" : [ "C20474T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.148"}}, +"children":[ { +"name": "England/PHEC-20B81/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-992E97/2020|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "A5128G,T6376A,C16329T,G25012A,C25728T,C27509T" }, +"mutations": { "nuc" : [ "A5128G","T6376A","C16329T","G25012A","C25728T","C27509T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "595", +"branch_attrs": { + "labels": { "nuc mutations": "T3163C" }, +"mutations": { "nuc" : [ "T3163C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.12"}}, +"children":[ { +"name": "England/QEUH-95DD9B/2020|20-08-07", +"branch_attrs": { + "labels": { "nuc mutations": "C2113T,T27856G" }, +"mutations": { "nuc" : [ "C2113T","T27856G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9570D4/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "C7768T" }, +"mutations": { "nuc" : [ "C7768T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "596", +"branch_attrs": { + "labels": { "nuc mutations": "C3737T,A3959G,C11758T,G12769T,G25785T,G29402T" }, +"mutations": { "nuc" : [ "C3737T","A3959G","C11758T","G12769T","G25785T","G29402T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.229"}}, +"children":[ { +"name": "ITA/APU-POLBA09/2020|MW485806.1|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "C4551T,G20238T" }, +"mutations": { "nuc" : [ "C4551T","G20238T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-26"}, "country": {"value": "ITA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "DV_IZSPB_236_S50|LR992121.1|20-08-29", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-29"}, "country": {"value": "DV_IZSPB_236_S50|LR992121.1|20-08-29"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "597", +"branch_attrs": { + "labels": { "nuc mutations": "G1210T,G9802T,G12067T" }, +"mutations": { "nuc" : [ "G1210T","G9802T","G12067T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.307"}}, +"children":[ { +"name": "England/SHEF-C184F/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G12907A,C13667T,C22450T,G25687A,T29785A" }, +"mutations": { "nuc" : [ "G12907A","C13667T","C22450T","G25687A","T29785A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9D8FFC/2020|20-09-18", +"branch_attrs": { + "labels": { "nuc mutations": "T20613C" }, +"mutations": { "nuc" : [ "T20613C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-09-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "598", +"branch_attrs": { + "labels": { "nuc mutations": "C3177T,G22093A" }, +"mutations": { "nuc" : [ "C3177T","G22093A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.168"}}, +"children":[ { +"name": "England/NORT-28B1EA/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "C27741T" }, +"mutations": { "nuc" : [ "C27741T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-28B28D/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "A8734G" }, +"mutations": { "nuc" : [ "A8734G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "599", +"branch_attrs": { + "labels": { "nuc mutations": "G10265A" }, +"mutations": { "nuc" : [ "G10265A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "600", +"branch_attrs": { + "labels": { "nuc mutations": "T13794G" }, +"mutations": { "nuc" : [ "T13794G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.300"}}, +"children":[ { +"name": "England/ALDP-5D52BE/2020|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "T28494C" }, +"mutations": { "nuc" : [ "T28494C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6FAF24/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6633T,C19862T" }, +"mutations": { "nuc" : [ "C6633T","C19862T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "601", +"branch_attrs": { + "labels": { "nuc mutations": "A15972G,C19718T,T28759C" }, +"mutations": { "nuc" : [ "A15972G","C19718T","T28759C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.70"}}, +"children":[ { +"name": "England/MILK-B01F25/2020|20-10-23", +"branch_attrs": { + "labels": { "nuc mutations": "C1722T,T3843C,G4300T,A4819G,C10277T,C15720T,C16114T,C17172T,A25351T,C27612T,A29031T,C29555T" }, +"mutations": { "nuc" : [ "C1722T","T3843C","G4300T","A4819G","C10277T","C15720T","C16114T","C17172T","A25351T","C27612T","A29031T","C29555T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/210050/2020|LR882268.1|20-07-19", +"branch_attrs": { + "labels": { "nuc mutations": "C203T,T3095C,C12880T,C23896T,C25831T,G28077T,C28603T" }, +"mutations": { "nuc" : [ "C203T","T3095C","C12880T","C23896T","C25831T","G28077T","C28603T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-19"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "602", +"branch_attrs": { + "labels": { "nuc mutations": "A23207G" }, +"mutations": { "nuc" : [ "A23207G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.299"}}, +"children":[ { +"name": "England/ALDP-691499/2020|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "C8650T,A21177G,C28603T" }, +"mutations": { "nuc" : [ "C8650T","A21177G","C28603T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-4A2BFC/2020|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "A20826G" }, +"mutations": { "nuc" : [ "A20826G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "603", +"branch_attrs": { + "labels": { "nuc mutations": "A19650G" }, +"mutations": { "nuc" : [ "A19650G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.301"}}, +"children":[ { +"name": "England/ALDP-9B5BC4/2020|20-08-28", +"branch_attrs": { + "labels": { "nuc mutations": "A9433T,G11837T,C18807T,C21595T,A22024C,C22096T,C25546T" }, +"mutations": { "nuc" : [ "A9433T","G11837T","C18807T","C21595T","A22024C","C22096T","C25546T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-49F5B8/2020|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "T21368C" }, +"mutations": { "nuc" : [ "T21368C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "604", +"branch_attrs": { + "labels": { "nuc mutations": "C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G" }, +"mutations": { "nuc" : [ "C4084T","G5716A","C6568T","C6628T","C7528T","C8139T","C9298T","A10286G","C19524T","A22116G" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.147"}}, +"children":[ { +"name": "England/MILK-62FD59/2020|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "T17313C,C17502T,C20320T" }, +"mutations": { "nuc" : [ "T17313C","C17502T","C20320T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-07-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-90DDC7/2020|20-06-26", +"branch_attrs": { + "labels": { "nuc mutations": "G488T,C1514T,C18744T" }, +"mutations": { "nuc" : [ "G488T","C1514T","C18744T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-06-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "605", +"branch_attrs": { + "labels": { "nuc mutations": "C815T,C3411T,G25437T" }, +"mutations": { "nuc" : [ "C815T","C3411T","G25437T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.225"}}, +"children":[ { +"name": "USA/IL-UW-1082/2020|MT929034.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "C2388T,G19656A,C26527T" }, +"mutations": { "nuc" : [ "C2388T","G19656A","C26527T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1773/2020|MW206588.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "T10795C,C12374T,C18452T,G25775T,C28153T" }, +"mutations": { "nuc" : [ "T10795C","C12374T","C18452T","G25775T","C28153T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "606", +"branch_attrs": { + "labels": { "nuc mutations": "C11620T" }, +"mutations": { "nuc" : [ "C11620T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.239"}}, +"children":[ { +"name": "England/LIVE-9BC33/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0361/2020|MW114997.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C4540T,C28006T" }, +"mutations": { "nuc" : [ "C4540T","C28006T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "607", +"branch_attrs": { + "labels": { "nuc mutations": "C1170T" }, +"mutations": { "nuc" : [ "C1170T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.313"}}, +"children":[ { +"name": "England/CAMB-1B087F/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "T8416C,C11379T,C16178T,G27651C" }, +"mutations": { "nuc" : [ "T8416C","C11379T","C16178T","G27651C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-2223F/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "C2488T,T7582C,C13671T" }, +"mutations": { "nuc" : [ "C2488T","T7582C","C13671T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "608", +"branch_attrs": { + "labels": { "nuc mutations": "T3154C" }, +"mutations": { "nuc" : [ "T3154C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.92"}}, +"children":[ { +"name": "England/ALDP-5A2A49/2020|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "C18981T" }, +"mutations": { "nuc" : [ "C18981T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-5A2D6E/2020|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "T15231C,G19670A,G25687T" }, +"mutations": { "nuc" : [ "T15231C","G19670A","G25687T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "609", +"branch_attrs": { + "labels": { "nuc mutations": "G16813A" }, +"mutations": { "nuc" : [ "G16813A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.26"}}, +"children":[ { +"name": "USA/WA-S1407/2020|MT821568.1|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "T6023C,C19041T,A21312G,C28312T" }, +"mutations": { "nuc" : [ "T6023C","C19041T","A21312G","C28312T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1434/2020|MT821707.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "C8802T" }, +"mutations": { "nuc" : [ "C8802T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "610", +"branch_attrs": { + "labels": { "nuc mutations": "C6445T,G16852T" }, +"mutations": { "nuc" : [ "C6445T","G16852T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.233"}}, +"children":[ { +"name": "USA/WA-S2598/2020|MT831859.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "G29254T" }, +"mutations": { "nuc" : [ "G29254T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1840/2020|MT834024.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "T5335C,G14186A,C27059T" }, +"mutations": { "nuc" : [ "T5335C","G14186A","C27059T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "611", +"branch_attrs": { + "labels": { "nuc mutations": "A5538T,T25783C" }, +"mutations": { "nuc" : [ "A5538T","T25783C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.65"}}, +"children":[ { +"name": "USA/WA-S1246/2020|MT821587.1|20-05-11", +"branch_attrs": { + "labels": { "nuc mutations": "C10408T,T21802C,C26022T,C27059T" }, +"mutations": { "nuc" : [ "C10408T","T21802C","C26022T","C27059T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S820/2020|MT641503.1|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G17261A" }, +"mutations": { "nuc" : [ "G17261A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "612", +"branch_attrs": { + "labels": { "nuc mutations": "G27281T" }, +"mutations": { "nuc" : [ "G27281T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.89"}}, +"children":[ { +"name": "England/CAMB-80B43/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "C2334T,C23121T" }, +"mutations": { "nuc" : [ "C2334T","C23121T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7666D/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "G10870T,C21614T" }, +"mutations": { "nuc" : [ "G10870T","C21614T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "613", +"branch_attrs": { + "labels": { "nuc mutations": "G18803T,A22606G" }, +"mutations": { "nuc" : [ "G18803T","A22606G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.116"}}, +"children":[ { +"name": "USA/WA-S2573/2020|MT831840.1|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2761/2020|MT947580.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "A5101G,A9830G,A12358T,G25922T" }, +"mutations": { "nuc" : [ "A5101G","A9830G","A12358T","G25922T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "614", +"branch_attrs": { + "labels": { "nuc mutations": "C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A" }, +"mutations": { "nuc" : [ "C313T","C2445T","C9430T","T15156C","C20368T","C26527T","C29149T","G29239A" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.236"}}, +"children":[ { +"name": "England/ALDP-9BEB16/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "G14428T" }, +"mutations": { "nuc" : [ "G14428T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A95376/2020|20-10-19", +"branch_attrs": { + "labels": { "nuc mutations": "A9436T,C15848T,C17550T,G26153T" }, +"mutations": { "nuc" : [ "A9436T","C15848T","C17550T","G26153T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "615", +"branch_attrs": { + "labels": { "nuc mutations": "G11447A,C21648T" }, +"mutations": { "nuc" : [ "G11447A","C21648T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.67"}}, +"children":[ { +"name": "England/QEUH-A9F5D0/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "C5717T,C10138T,C12559T,A19098G,C24130T" }, +"mutations": { "nuc" : [ "C5717T","C10138T","C12559T","A19098G","C24130T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96AEF2/2020|20-08-15", +"branch_attrs": { + "labels": { "nuc mutations": "G7037T,C12488T" }, +"mutations": { "nuc" : [ "G7037T","C12488T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "616", +"branch_attrs": { + "labels": { "nuc mutations": "C19170T,G19509A" }, +"mutations": { "nuc" : [ "C19170T","G19509A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.10"}}, +"children":[ { +"name": "Scotland/CVR1557/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "G23401T" }, +"mutations": { "nuc" : [ "G23401T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-03"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-34610/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "G16014A" }, +"mutations": { "nuc" : [ "G16014A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-21"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "617", +"branch_attrs": { + "labels": { "nuc mutations": "C26313T" }, +"mutations": { "nuc" : [ "C26313T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "L.2"}}, +"children":[ { +"name": "Netherlands/NA_436/2020|LR883367.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "G29628T" }, +"mutations": { "nuc" : [ "G29628T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-07"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/Friesland_33/2020|LR883315.1|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4824T" }, +"mutations": { "nuc" : [ "C4824T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-14"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "618", +"branch_attrs": { + "labels": { "nuc mutations": "C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T" }, +"mutations": { "nuc" : [ "C913T","C3267T","C5388A","C5986T","T6954C","C14676T","C15279T","T16176C","A23063T","C23271A","C23604A","C23709T","T24506G","G24914C","C27972T","G28048T","A28111G","G28280C","A28281T","T28282A","C28977T" ] } + }, +"node_attrs": { + "div":28, "MAT_Clade_0": {"value": "20I/501Y.V1"}, "MAT_Clade_1": {"value": "B.1.1.7"}}, +"children":[ { +"name": "619", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,G210T,C2453T" }, +"mutations": { "nuc" : [ "G174T","G210T","C2453T" ] } + }, +"node_attrs": { + "div":31, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/CAMC-B36516/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "C2918T" }, +"mutations": { "nuc" : [ "C2918T" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B362D3/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "C29311T" }, +"mutations": { "nuc" : [ "C29311T" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "620", +"branch_attrs": { + "labels": { "nuc mutations": "T8603C,A17615G,G25437T" }, +"mutations": { "nuc" : [ "T8603C","A17615G","G25437T" ] } + }, +"node_attrs": { + "div":31, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-B3A284/2020|20-11-01", +"branch_attrs": { + "labels": { "nuc mutations": "C27046T" }, +"mutations": { "nuc" : [ "C27046T" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B365AD/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "T19232C" }, +"mutations": { "nuc" : [ "T19232C" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "621", +"branch_attrs": { + "labels": { "nuc mutations": "A1163T" }, +"mutations": { "nuc" : [ "A1163T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.25"}}, +"children":[ { +"name": "BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "C19273T" }, +"mutations": { "nuc" : [ "C19273T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-07"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "G15260T,G26268T" }, +"mutations": { "nuc" : [ "G15260T","G26268T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-18"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "622", +"branch_attrs": { + "labels": { "nuc mutations": "C7600T,G7798T,T23548C" }, +"mutations": { "nuc" : [ "C7600T","G7798T","T23548C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "D.3"}}, +"children":[ { +"name": "AUS/VIC3114/2020|MT972550.1|20-07-06", +"branch_attrs": { + "labels": { "nuc mutations": "C24912T,T27484C" }, +"mutations": { "nuc" : [ "C24912T","T27484C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-06"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC9664/2020|MW156172.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "C506T,G29072T" }, +"mutations": { "nuc" : [ "C506T","G29072T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-12"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "623", +"branch_attrs": { + "labels": { "nuc mutations": "T7540C,G16647T,G22992A,G23401A" }, +"mutations": { "nuc" : [ "T7540C","G16647T","G22992A","G23401A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": "20F"}, "MAT_Clade_1": {"value": "D.2"}}, +"children":[ { +"name": "AUS/VIC13094/2020|MW185501.1|20-07-31", +"branch_attrs": { + "labels": { "nuc mutations": "G6662A" }, +"mutations": { "nuc" : [ "G6662A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-31"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "624", +"branch_attrs": { + "labels": { "nuc mutations": "C18555T,C22987T" }, +"mutations": { "nuc" : [ "C18555T","C22987T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "AUS/VIC9179/2020|MW153248.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "G1338C,C5691T,A11425T,C20089T" }, +"mutations": { "nuc" : [ "G1338C","C5691T","A11425T","C20089T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-21"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC11646/2020|MW155572.1|20-07-22", +"branch_attrs": { + "labels": { "nuc mutations": "G6617T" }, +"mutations": { "nuc" : [ "G6617T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-22"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "625", +"branch_attrs": { + "labels": { "nuc mutations": "C19488T" }, +"mutations": { "nuc" : [ "C19488T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.217"}}, +"children":[ { +"name": "England/CAMB-82060/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5575T,A5991G,C13329T" }, +"mutations": { "nuc" : [ "C5575T","A5991G","C13329T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-82E1B/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "A8374T" }, +"mutations": { "nuc" : [ "A8374T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "626", +"branch_attrs": { + "labels": { "nuc mutations": "G5572A,A6366T,G11410A,G25776T" }, +"mutations": { "nuc" : [ "G5572A","A6366T","G11410A","G25776T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.219"}}, +"children":[ { +"name": "covid_hub_pl_ibch_0157|LR991987.1|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "A4228G,A11410G,G23403A" }, +"mutations": { "nuc" : [ "A4228G","A11410G","G23403A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-19"}, "country": {"value": "covid_hub_pl_ibch_0157|LR991987.1|20-05-19"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Poland/1/2020|LR899030.1|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "T241C,T9440G,G17964T,T19488C,G29747T" }, +"mutations": { "nuc" : [ "T241C","T9440G","G17964T","T19488C","G29747T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-20"}, "country": {"value": "Poland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "627", +"branch_attrs": { + "labels": { "nuc mutations": "A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C" }, +"mutations": { "nuc" : [ "A8244G","G8408A","G12191T","T26171A","C28500T","G29254A","G29474T","G29751C" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.218"}}, +"children":[ { +"name": "England/CAMC-947259/2020|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9927C9/2020|20-08-27", +"branch_attrs": { + "labels": { "nuc mutations": "T595C,G2659T,G15773A,C21789T,G24197T,G26172T" }, +"mutations": { "nuc" : [ "T595C","G2659T","G15773A","C21789T","G24197T","G26172T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-08-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "628", +"branch_attrs": { + "labels": { "nuc mutations": "A11869G,T27484C" }, +"mutations": { "nuc" : [ "A11869G","T27484C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.96"}}, +"children":[ { +"name": "SAU/KFSHRC44/2020|MT820480.1|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-11"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "SAU/KAIMRC67/2020|MT820487.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G29422T" }, +"mutations": { "nuc" : [ "G29422T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "629", +"branch_attrs": { + "labels": { "nuc mutations": "C2399T" }, +"mutations": { "nuc" : [ "C2399T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.20"}}, +"children":[ { +"name": "Scotland/EDB300/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C15240T" }, +"mutations": { "nuc" : [ "C15240T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-29"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3194/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C10335T,A11430G,G19117T,G25429A,A27232G,C28940T" }, +"mutations": { "nuc" : [ "C10335T","A11430G","G19117T","G25429A","A27232G","C28940T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "630", +"branch_attrs": { + "labels": { "nuc mutations": "T4149C,C12525T,G25599T" }, +"mutations": { "nuc" : [ "T4149C","C12525T","G25599T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.178"}}, +"children":[ { +"name": "England/CAMB-1AA438/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AFB7A/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "C6016T,A8031G,C29353T" }, +"mutations": { "nuc" : [ "C6016T","A8031G","C29353T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "631", +"branch_attrs": { + "labels": { "nuc mutations": "A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G" }, +"mutations": { "nuc" : [ "A1163T","T3256C","C5622T","G14202T","G19542T","C19718T","C22388T","C26060T","G29227T","C29466T","A29771G" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.315"}}, +"children":[ { +"name": "Wales/PHWC-48212D/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "G22381T,C26029A" }, +"mutations": { "nuc" : [ "G22381T","C26029A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-20"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9C80B0/2020|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "G22471T,T22896C" }, +"mutations": { "nuc" : [ "G22471T","T22896C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "632", +"branch_attrs": { + "labels": { "nuc mutations": "T1543A,T4369C,T22020C,C27911T" }, +"mutations": { "nuc" : [ "T1543A","T4369C","T22020C","C27911T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.280"}}, +"children":[ { +"name": "England/MILK-9C4087/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C1938T" }, +"mutations": { "nuc" : [ "C1938T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96F349/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "G21606T,C21910T,T21976C,G28230T" }, +"mutations": { "nuc" : [ "G21606T","C21910T","T21976C","G28230T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "633", +"branch_attrs": { + "labels": { "nuc mutations": "T15978C,G24794T" }, +"mutations": { "nuc" : [ "T15978C","G24794T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.56"}}, +"children":[ { +"name": "England/BIRM-5FC3B/2020|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "A8390G,C18676T,C19366T,C28311T,G29764A" }, +"mutations": { "nuc" : [ "A8390G","C18676T","C19366T","C28311T","G29764A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-13ADF/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "634", +"branch_attrs": { + "labels": { "nuc mutations": "C8917T" }, +"mutations": { "nuc" : [ "C8917T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.182"}}, +"children":[ { +"name": "England/BIRM-6529A/2020|20-09-30", +"branch_attrs": { + "labels": { "nuc mutations": "C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T" }, +"mutations": { "nuc" : [ "C147T","G9389A","C15720T","G27955T","C27972T","G28628T","G29645T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2831/2020|MW077478.1|20-09-08", +"branch_attrs": { + "labels": { "nuc mutations": "C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C" }, +"mutations": { "nuc" : [ "C478T","C1076T","C1218T","T2484C","C9924T","C10279T","G11596T","G12769A","C14724T","A19540G","G25906T","C27110T","T27384C" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "635", +"branch_attrs": { + "labels": { "nuc mutations": "G27996T" }, +"mutations": { "nuc" : [ "G27996T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.193"}}, +"children":[ { +"name": "England/NORT-282796/2020|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "A1755G,C15824T" }, +"mutations": { "nuc" : [ "A1755G","C15824T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-2839AE/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G29315T,G29468C" }, +"mutations": { "nuc" : [ "G29315T","G29468C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "636", +"branch_attrs": { + "labels": { "nuc mutations": "C527T,C1962T,C7735T,T23255C,A28065C" }, +"mutations": { "nuc" : [ "C527T","C1962T","C7735T","T23255C","A28065C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.120"}}, +"children":[ { +"name": "England/ALDP-951E49/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "C16045T,C28732T" }, +"mutations": { "nuc" : [ "C16045T","C28732T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9557A4/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "C19454T,T19538C" }, +"mutations": { "nuc" : [ "C19454T","T19538C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "637", +"branch_attrs": { + "labels": { "nuc mutations": "G21255C,G28960T" }, +"mutations": { "nuc" : [ "G21255C","G28960T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.132"}}, +"children":[ { +"name": "USA/CA-CZB-2205/2020|MW035956.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C21364T,C26625T,C28744T" }, +"mutations": { "nuc" : [ "C21364T","C26625T","C28744T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2184/2020|MW035923.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C21205T" }, +"mutations": { "nuc" : [ "C21205T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "638", +"branch_attrs": { + "labels": { "nuc mutations": "C5700A" }, +"mutations": { "nuc" : [ "C5700A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.32"}}, +"children":[ { +"name": "IND/GBRC203a/2020|MT669321.1|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "A2292C,C2836T,G25563T,C29750T" }, +"mutations": { "nuc" : [ "A2292C","C2836T","G25563T","C29750T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-07"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2809/2020|MW077484.1|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C313T,C1489T,G3287T,C9693T,C10815T,C15346A,C16626T,C25728T,G29474T,C29750T" }, +"mutations": { "nuc" : [ "C313T","C1489T","G3287T","C9693T","C10815T","C15346A","C16626T","C25728T","G29474T","C29750T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "639", +"branch_attrs": { + "labels": { "nuc mutations": "G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T" }, +"mutations": { "nuc" : [ "G5554T","G19891T","C22938A","C24034T","G25249T","G26152T","C27532T","G28321T","C29614T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.266"}}, +"children":[ { +"name": "England/QEUH-96E025/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "T1088C,C20736T" }, +"mutations": { "nuc" : [ "T1088C","C20736T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-94375E/2020|20-08-02", +"branch_attrs": { + "labels": { "nuc mutations": "G25785T" }, +"mutations": { "nuc" : [ "G25785T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-02"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "640", +"branch_attrs": { + "labels": { "nuc mutations": "A20288G,C21721T,C26894T,C28638A" }, +"mutations": { "nuc" : [ "A20288G","C21721T","C26894T","C28638A" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.228"}}, +"children":[ { +"name": "USA/CA-CZB-4099/2020|MW134393.1|20-08-15", +"branch_attrs": { + "labels": { "nuc mutations": "C478T,T2698C,G16068T,G16935T,G20679A,G29227T" }, +"mutations": { "nuc" : [ "C478T","T2698C","G16068T","G16935T","G20679A","G29227T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "G2635A,T7426C,A23234G" }, +"mutations": { "nuc" : [ "G2635A","T7426C","A23234G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "641", +"branch_attrs": { + "labels": { "nuc mutations": "T3615C,G22256T,C23802T,A27403T,C27741T" }, +"mutations": { "nuc" : [ "T3615C","G22256T","C23802T","A27403T","C27741T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.72"}}, +"children":[ { +"name": "England/CAMB-7C12A/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-83348/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "642", +"branch_attrs": { + "labels": { "nuc mutations": "C20233T,C22210T" }, +"mutations": { "nuc" : [ "C20233T","C22210T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.58"}}, +"children":[ { +"name": "Switzerland/220001/2020|LR882220.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "G94T,C5365T,C13708A,A26097G,G28003T" }, +"mutations": { "nuc" : [ "G94T","C5365T","C13708A","A26097G","G28003T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-24"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BIRM-6BECD/2020|20-11-17", +"branch_attrs": { + "labels": { "nuc mutations": "G1738T,G4960T,A15477G,C22858T,C23705T,T25312C,C26681T,G27762C,G28056A,G28085T,C28603T,G29449A" }, +"mutations": { "nuc" : [ "G1738T","G4960T","A15477G","C22858T","C23705T","T25312C","C26681T","G27762C","G28056A","G28085T","C28603T","G29449A" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "643", +"branch_attrs": { + "labels": { "nuc mutations": "A23063T" }, +"mutations": { "nuc" : [ "A23063T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.136"}}, +"children":[ { +"name": "England/CAMC-946506/2020|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C913T,C6636T,G21800T,C27972T,G28048T" }, +"mutations": { "nuc" : [ "C913T","C6636T","G21800T","C27972T","G28048T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC2173/2020|MT972184.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "G10540A,C26984T,T28196C" }, +"mutations": { "nuc" : [ "G10540A","C26984T","T28196C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-24"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "644", +"branch_attrs": { + "labels": { "nuc mutations": "G596T,T18231C" }, +"mutations": { "nuc" : [ "G596T","T18231C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.169"}}, +"children":[ { +"name": "USA/MS-CDC-6546/2020|MW279423.1|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "G1589T" }, +"mutations": { "nuc" : [ "G1589T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1780/2020|MW425014.1|20-07-07", +"branch_attrs": { + "labels": { "nuc mutations": "T3127C" }, +"mutations": { "nuc" : [ "T3127C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "645", +"branch_attrs": { + "labels": { "nuc mutations": "T10513C,T27851C,C29541T,C29739T" }, +"mutations": { "nuc" : [ "T10513C","T27851C","C29541T","C29739T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.109"}}, +"children":[ { +"name": "England/ALDP-94A63C/2020|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "A7291G,C7423T,C9979T,C26447T,C29077T" }, +"mutations": { "nuc" : [ "A7291G","C7423T","C9979T","C26447T","C29077T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-06-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-52A636/2020|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "A2756G,C17550T" }, +"mutations": { "nuc" : [ "A2756G","C17550T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "646", +"branch_attrs": { + "labels": { "nuc mutations": "C16101T" }, +"mutations": { "nuc" : [ "C16101T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.154"}}, +"children":[ { +"name": "England/SHEF-D1CE6/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C5339T,A29571T,C29572T,G29573A" }, +"mutations": { "nuc" : [ "C5339T","A29571T","C29572T","G29573A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-C0F96/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G12514T,A18616G,C28256T,G29779C" }, +"mutations": { "nuc" : [ "G12514T","A18616G","C28256T","G29779C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "647", +"branch_attrs": { + "labels": { "nuc mutations": "C21302T,C21304A,G21305A,G28884T" }, +"mutations": { "nuc" : [ "C21302T","C21304A","G21305A","G28884T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.44"}}, +"children":[ { +"name": "England/QEUH-B10460/2020|20-11-02", +"branch_attrs": { + "labels": { "nuc mutations": "A15753G,A19655G,G27798T" }, +"mutations": { "nuc" : [ "A15753G","A19655G","G27798T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-96D5CD/2020|20-08-20", +"branch_attrs": { + "labels": { "nuc mutations": "C4655T,G5305A,A5958G,C28887T" }, +"mutations": { "nuc" : [ "C4655T","G5305A","A5958G","C28887T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-20"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "648", +"branch_attrs": { + "labels": { "nuc mutations": "G5950T,C19164T,A21137G,T27447C,T29661C" }, +"mutations": { "nuc" : [ "G5950T","C19164T","A21137G","T27447C","T29661C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.111"}}, +"children":[ { +"name": "ZW-6983|LR963462.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C10341T" }, +"mutations": { "nuc" : [ "C10341T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "ZW-6983|LR963462.1|20-05-01"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ZW-6978|LR963455.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "A13833G" }, +"mutations": { "nuc" : [ "A13833G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "ZW-6978|LR963455.1|20-05-01"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "649", +"branch_attrs": { + "labels": { "nuc mutations": "A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C" }, +"mutations": { "nuc" : [ "A3852T","C3961T","G7798T","C9891T","C10116T","C21846T","G23012A","T23287C","C23604A","C25276A","T26767C" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.318"}}, +"children":[ { +"name": "USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02", +"branch_attrs": { + "labels": { "nuc mutations": "C28720T" }, +"mutations": { "nuc" : [ "C28720T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "21-02-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-1169960/2021|21-01-25", +"branch_attrs": { + "labels": { "nuc mutations": "T4895C,C9072T,G20578A,G23948C,C24382T,G28209T,A28271G,C29769T" }, +"mutations": { "nuc" : [ "T4895C","C9072T","G20578A","G23948C","C24382T","G28209T","A28271G","C29769T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "650", +"branch_attrs": { + "labels": { "nuc mutations": "G5924A,T21775G" }, +"mutations": { "nuc" : [ "G5924A","T21775G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.263"}}, +"children":[ { +"name": "England/ALDP-952A44/2020|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "G16852T,G18984T" }, +"mutations": { "nuc" : [ "G16852T","G18984T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B4A22/2020|20-09-07", +"branch_attrs": { + "labels": { "nuc mutations": "G2885A,C15026T,G17427T,G19635T,C21846T" }, +"mutations": { "nuc" : [ "G2885A","C15026T","G17427T","G19635T","C21846T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "651", +"branch_attrs": { + "labels": { "nuc mutations": "C7095T,A16179G" }, +"mutations": { "nuc" : [ "C7095T","A16179G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.185"}}, +"children":[ { +"name": "Netherlands/NA_359/2020|LR883961.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C13502T" }, +"mutations": { "nuc" : [ "C13502T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-07"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_589/2020|LR883868.1|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "C21588T,G25012T" }, +"mutations": { "nuc" : [ "C21588T","G25012T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-05"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "652", +"branch_attrs": { + "labels": { "nuc mutations": "G4207T,A4208C,G11842T" }, +"mutations": { "nuc" : [ "G4207T","A4208C","G11842T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.13"}}, +"children":[ { +"name": "England/CAMB-1AE7FF/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6033T" }, +"mutations": { "nuc" : [ "C6033T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-762D2/2020|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "C14757T,G16072T,A19743C,C22498T" }, +"mutations": { "nuc" : [ "C14757T","G16072T","A19743C","C22498T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-03-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "653", +"branch_attrs": { + "labels": { "nuc mutations": "G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T" }, +"mutations": { "nuc" : [ "G1599T","C4965T","A6466G","A6616G","A7319G","G7954T","C12651T","G14371A","G21624T","G23587T","G28914T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.195"}}, +"children":[ { +"name": "England/ALDP-BCA4B0/2020|20-11-23", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-11-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-119985B/2021|21-01-27", +"branch_attrs": { + "labels": { "nuc mutations": "G7319A,G26526T,C27213T" }, +"mutations": { "nuc" : [ "G7319A","G26526T","C27213T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "21-01-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "654", +"branch_attrs": { + "labels": { "nuc mutations": "C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T" }, +"mutations": { "nuc" : [ "C15933T","G16968T","T19839C","G28881A","G28882A","G28883C","C29784T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.291"}}, +"children":[ { +"name": "USA/WA-S1222/2020|MT821613.1|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "C186T" }, +"mutations": { "nuc" : [ "C186T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1655/2020|MT834136.1|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C15240T,C26607T" }, +"mutations": { "nuc" : [ "C15240T","C26607T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "655", +"branch_attrs": { + "labels": { "nuc mutations": "T15933C,T16968G,T29784C" }, +"mutations": { "nuc" : [ "T15933C","T16968G","T29784C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.77"}}, +"children":[ { +"name": "Spain/R60/2020|LR884131.1|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "G3849A,G27506T,C29203T" }, +"mutations": { "nuc" : [ "G3849A","G27506T","C29203T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-04-17"}, "country": {"value": "Spain"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-5682/2020|MW276261.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "A14424G,G18880T,C28057T,C29774T" }, +"mutations": { "nuc" : [ "A14424G","G18880T","C28057T","C29774T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "656", +"branch_attrs": { + "labels": { "nuc mutations": "C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T" }, +"mutations": { "nuc" : [ "C4321T","T8800C","T15801C","C17746T","C26801T","G27703T","C28320T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.224"}}, +"children":[ { +"name": "England/MILK-A06194/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "C12513T,T29059C" }, +"mutations": { "nuc" : [ "C12513T","T29059C" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B32AA2/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "G14528A,C16393T,T16695G,C24023T" }, +"mutations": { "nuc" : [ "G14528A","C16393T","T16695G","C24023T" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "657", +"branch_attrs": { + "labels": { "nuc mutations": "G20980A" }, +"mutations": { "nuc" : [ "G20980A" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.134"}}, +"children":[ { +"name": "USA/FHCRC-19442/2020|MW593677.1|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "T5028C,C8818T,G9398T,C15952T" }, +"mutations": { "nuc" : [ "T5028C","C8818T","G9398T","C15952T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07", +"branch_attrs": { + "labels": { "nuc mutations": "A1005G,T6407A,G20476T" }, +"mutations": { "nuc" : [ "A1005G","T6407A","G20476T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-07-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +] +} +, +{ +"name": "658", +"branch_attrs": { + "labels": { "nuc mutations": "T241C,G1440A,G2891A" }, +"mutations": { "nuc" : [ "T241C","G1440A","G2891A" ] } + }, +"node_attrs": { + "div":4, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.3"}}, +"children":[ { +"name": "England/CAMB-7772D/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C4668T,C21742T,C25931A" }, +"mutations": { "nuc" : [ "C4668T","C21742T","C25931A" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12208F/2020|20-03-21", +"branch_attrs": { + "labels": { "nuc mutations": "C14585T,C27603T" }, +"mutations": { "nuc" : [ "C14585T","C27603T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "659", +"branch_attrs": { + "labels": { "nuc mutations": "G28851T" }, +"mutations": { "nuc" : [ "G28851T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.3.1"}}, +"children":[ { +"name": "Wales/PHWC-31CB7/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C9180T,C16466T,G19670A" }, +"mutations": { "nuc" : [ "C9180T","C16466T","G19670A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-14"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-26D2B/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C5183T,G18651T" }, +"mutations": { "nuc" : [ "C5183T","G18651T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-30"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +] +} +}