Mercurial > repos > iuc > usher_matutils
diff test-data/test_18_path_clades.tabular @ 0:79e2ee4e6ebb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"
| author | iuc |
|---|---|
| date | Tue, 11 May 2021 17:54:51 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_18_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,360 @@ +clade root_id from_tree_root +19A 1 +B 1 +B.26 Scotland/EDB354/2020|20-03-30 > C7423T,A29780C +B.48 5 > C20270T +B.15 8 > T4949C +B.5 9 > C29635T +B.54 10 > C14805T,G26144T +20A 28 > C241T,C3037T,C14408T,A23403G +B.1.108 28 > C241T,C3037T,C14408T,A23403G +B.20 660 > A14940G +B.11 USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 > T514C,C22033A +B.46 USA/CA-QDX-1986/2020|MW190732.1|20-03-18 > C11050T,A12557G,C24904T,A27359G +B.1.14 USA/CA-CZB-1015/2020|MT438733.1|20-04-22 > T15867A,C25692T +B.19 USA/CA-CZB-1051/2020|MT449644.1|20-04-06 > G7273A,C10277T +B.6 674 > C6312A,C13730T,C23929T,C28311T +19B 676 > C8782T,T28144C +A 676 > C8782T,T28144C +B.4 699 > G1397A,T28688C,G29742T +B.23 England/SHEF-BFF21/2020|20-03-25 > C20270T > A18671G,A29683T +B.33 11 > C14805T,G26144T > T17247C +B.29 England/ALDP-9EE3AC/2020|20-05-06 > C14805T,G26144T > G20991T,C23707T +B.40 England/CAMB-8042A/2020|20-04-10 > C14805T,G26144T > A2480G,C2558T,A4015T +B.41 SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 > C14805T,G26144T > G5572T,C28311T +B.1.105 England/CAMB-75BD8/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > C18060T,G28514T +B.1.103 47 > C241T,C3037T,C14408T,A23403G > C25665T,G28325T +B.1.378 49 > C241T,C3037T,C14408T,A23403G > G3871T +B.1.139 USA/WI-UW-558/2020|MT750137.1|20-06-25 > C241T,C3037T,C14408T,A23403G > A696C +B.1.350 53 > C241T,C3037T,C14408T,A23403G > G25563T +B.1.221.1 269 > C241T,C3037T,C14408T,A23403G > C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.222 Scotland/GCVR-172150/2020|20-03-30 > C241T,C3037T,C14408T,A23403G > C1545T,C22879A +B.1.379 England/BRIS-122C4F/2020|20-04-02 > C241T,C3037T,C14408T,A23403G > A11782G,G22203T,G27754T +B.1.182 275 > C241T,C3037T,C14408T,A23403G > A20268G +B.1.5 341 > C241T,C3037T,C14408T,A23403G > C15324T +B.1.215 Scotland/GCVR-173C30/2020|20-04-07 > C241T,C3037T,C14408T,A23403G > G3831A,T7441C +20E.EU1 361 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.177.14 361 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.179 England/ALDP-4A2A77/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > C7834T,C16997T,G25429T +B.1.81 England/BRIS-12468B/2020|20-04-09 > C241T,C3037T,C14408T,A23403G > C1909T,T27576C +B.1.201 England/NORW-E9DF7/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > C2940T,C7765T +B.1.395 398 > C241T,C3037T,C14408T,A23403G > C6990T +B.1.67 Wales/PHWC-29E43/2020|20-04-04 > C241T,C3037T,C14408T,A23403G > G9220A,T26512C +B.1.98 England/LOND-D3534/2020|20-03-27 > C241T,C3037T,C14408T,A23403G > C25350T,T27280C +B.1.76 England/LIVE-A63E5/2020|20-03-18 > C241T,C3037T,C14408T,A23403G > G680T,T17835C +B.1.376 Wales/PHWC-27461/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > C5506T,G14241T,C19374T +B.1.23 AUS/VIC1056/2020|MT451723.1|20-04-03 > C241T,C3037T,C14408T,A23403G > T7438C,A21944T,C29353T +B.1.153 England/LIVE-A65EF/2020|20-03-19 > C241T,C3037T,C14408T,A23403G > G10523C,G14580T +B.1.113 IND/GBRC209a/2020|MT664202.1|20-06-11 > C241T,C3037T,C14408T,A23403G > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,G25563T,C29750T +B.1.70 Scotland/CVR30/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > C1884T,T26497C +B.1.145 IND/GBRC99/2020|MT509504.1|20-05-06 > C241T,C3037T,C14408T,A23403G > G4866T,C14425A,A21511G +B.1.197 AUS/VIC1239/2020|MT451821.1|20-04-02 > C241T,C3037T,C14408T,A23403G > C6723T,T26094C,G28476T +B.1.143 IND/GBRC128/2020|MT539172.1|20-05-02 > C241T,C3037T,C14408T,A23403G > C4084T,G5572T +B.1.187 POL/PL_MCB_75/2020|MW273857.1|20-04-16 > C241T,C3037T,C14408T,A23403G > A544G,C17104T +B.1.414 Netherlands/NA_302/2020|LR878041.1|20-04-01 > C241T,C3037T,C14408T,A23403G > A3058G,G20275A +B.1.206 USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 > C241T,C3037T,C14408T,A23403G > G2282A,T9742C,C17639T,G20160T +B.1.69 423 > C241T,C3037T,C14408T,A23403G > C23422T,T23849C,C29686T +20B 426 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C +B.1.195 England/ALDP-BCA4B0/2020|20-11-23 > C241T,C3037T,C14408T,A23403G > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 USA/WA-S1222/2020|MT821613.1|20-05-08 > C241T,C3037T,C14408T,A23403G > C186T,C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.18 England/LIVE-9D7D6/2020|20-04-15 > G29711T > C1218T,C27493T,G27806T +B.13 USA/WI-UW-314/2020|MT706422.1|20-04-16 > G29711T > A4838G,C7420T,C14937T,C20148T,G25907T +B.45 Scotland/CVR780/2020|20-03-27 > C28854T > C5997T,C12710T +B.12 Japan/TKYE63557_2020/2020|LC581365.1|20-03 > C28854T > C11752T,C25665T,C26447T,A27700G,T28854C,T28912C +B.6.6 MYS/188407/2020|MT372480.1|20-03-18 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T,T25473C +A.2 682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.4 USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 > C8782T,T28144C > G16381A,T17877C,G25500T,C25854T,G28878A,G29742A +A.3 697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.5 AUS/VIC1878/2020|MT745600.1|20-03-29 > G1397A,T28688C,G29742T > C1076T,A28955T +B.37 13 > C14805T,G26144T > T17247C > C8078T +B.32 Scotland/CVR44/2020|20-03-13 > C14805T,G26144T > T17247C > G443A,A1587G +B.34 Scotland/CVR207/2020|20-03-18 > C14805T,G26144T > T17247C > C988T,G12832A +B.1.391 England/CAMB-76515/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25429T > C16289T,T25429G +B.1.104 England/LEED-2A8D10/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G25429T > C13730T,C25916T +B.1.254 35 > C241T,C3037T,C14408T,A23403G > G25429T > A10874G,C25916T,T26677C +B.1.79 38 > C241T,C3037T,C14408T,A23403G > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 Scotland/CVR1519/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25429T > A6441G,A28841G +B.1.392 England/NORW-E8C37/2020|20-04-13 > C241T,C3037T,C14408T,A23403G > G25429T > C3602T,C11460T,A24232G +B.1.252 43 > C241T,C3037T,C14408T,A23403G > G25429T > G1589A,G29474T +B.1.249 England/PHEC-127E8/2020|20-03-28 > C241T,C3037T,C14408T,A23403G > G25429T > G21538T +B.1.110 54 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T +20C 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.371 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.440 211 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T +B.1.419 England/CAMB-79ECC/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > A20268G > A10323G,G21778A +B.1.416.1 England/QEUH-963433/2020|20-08-10 > C241T,C3037T,C14408T,A23403G > A20268G > C2706T,C5339T,C25731T,C28833T +B.1.258 322 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C +B.1.210 IND/GBRC174b/2020|MT607610.1|20-06-05 > C241T,C3037T,C14408T,A23403G > C15324T > C3634T,C22444T,C28854T +B.1.178 France/10036BG/2020|MT470106.1|20-03 > C241T,C3037T,C14408T,A23403G > C15324T > G28202A +B.1.213 POL/PL_MCB_97/2020|MW273879.1|20-05-10 > C241T,C3037T,C14408T,A23403G > C15324T > C2570T,A7031G,G13617T +B.1.209 348 > C241T,C3037T,C14408T,A23403G > C15324T > G19542T,G20679A,T27576G +B.1.149 England/QEUH-990752/2020|20-08-29 > C241T,C3037T,C14408T,A23403G > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 350 > C241T,C3037T,C14408T,A23403G > C15324T > C15277T +B.1.218 Switzerland/240009/2020|LR880588.1|20-08-07 > C241T,C3037T,C14408T,A23403G > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 355 > C241T,C3037T,C14408T,A23403G > A26530G > G11596T +B.1.128 356 > C241T,C3037T,C14408T,A23403G > A26530G > C8293T,T18488C,T24739C +B.1.205 PER/covper091/2020|MW030227.1|20-03-17 > C241T,C3037T,C14408T,A23403G > A26530G > C15277T,A21917G +B.1.97 England/CAMB-737D6/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > A26530G > A2775G,G4255T,C6861T,C13568T,A20355G +B.1.177.11 Scotland/QEUH-9D11C0/2020|20-09-16 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > T4195A,C10977T,C24334T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 366 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T +B.1.177.23 Switzerland/270068/2020|LR882987.1|20-09-02 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C13671T,C14805T,G17058T,G17278T,A20284T,T20285C,A27755T +B.1.177.17 England/ALDP-9E75E9/2020|20-09-25 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > A408G,G2764T,C22088T,C29686T +B.1.177.9 Wales/PHWC-4815AA/2020|20-10-13 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C12049T,G21800T,A22053C,G22346T +B.1.35 Wales/PHWC-16930B/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > C6990T > C3264T,C29200T +B.1.207 USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 > C241T,C3037T,C14408T,A23403G > A187G > A10770G,C16017T,T27212C,G27561T +B.1.198 England/BRIS-128DCE/2020|20-04-14 > C241T,C3037T,C14408T,A23403G > A187G > C12213T,C19066A +B.1.1.119 427 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A +A.5 679 > C8782T,T28144C > A23403G,C26088T > G9928T,G23403A +A.10 680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +B.1.110.3 57 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > C601T,G12832T,G27915A +B.1.110.1 CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G1319A,G2945A,C10156T,T17208C +B.1.110.2 England/LEED-2A87C7/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G3230A,C23453T +B.1.485 USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T20037C,G28073T +B.1.22 67 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 68 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18555T,C28892T +B.1.491 72 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A3103C,C5893T,G24368T,A28117T +B.1.489 Wales/PHWC-2E0A2/2020|20-04-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18568T,G24368T,C24621T +B.1.333 USA/WA-S2746/2020|MT947577.1|20-07-19 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 USA/UT-05590/2020|MW084605.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A2151G,G19542T,C23551T,C28821A +B.1.310 Netherlands/NA_588/2020|LR883860.1|20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18281A,A20742G,A20755C,G25784T +B.1.346 USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 USA/CA-CZB-1793/2020|MT750334.1|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C379A,A20503G +B.1.521 108 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T +B.1.294 USA/WI-UW-1119/2020|MT929068.1|20-07-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A19899T,A21464G +B.1.39 123 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8788C,G26951A +B.1.324 USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7528T,G8213A +B.1.328 USA/MD-MDH-0071/2020|MT827237.1|20-05-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C775T,C23683T,C27923T,G28975T +B.1.341 USA/WA-QDX-235/2020|MT806806.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12557C,A23534T +B.1.332 127 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1917T +B.1.325 USA/UT-QDX-2224/2020|MW191025.1|20-03-13 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C23191T,A25910C +B.1.411 134 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T +B.1.323 USA/MN-MDH-1596/2020|MT997714.1|20-05-12 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T9070C,C20325T +B.1.356 England/LIVE-A91F7/2020|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T13006C,C19186T,C25688T +B.1.268 146 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G3892T +B.1.287 USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C16428T,C20555T,C21772T +B.1.38 USA/MN-MDH-1464/2020|MT919997.1|20-03-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C3044T,G25523T,T27869C +B.1.348 152 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 USA/WA-UW-6327/2020|MT412324.1|20-04-02 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5240G,C26625T +B.1.360 154 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27847T +B.1.366 USA/TX-QDX-261/2020|MT806804.1|20-05-01 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8041C,C18029T,G22225T +B.1.363 USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C335T,G526C,T16425G +B.1.305 USA/WI-UW-994/2020|MT846680.1|20-07-20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.519 England/BRIS-127AD7/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G3638T,G28808T,G29434C,G29705T +B.1.304 USA/WI-UW-522/2020|MT750102.1|20-06-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 USA/DC-HP00089/2020|MT509482.1|20-03-31 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9510T,C11919T +B.1.313 USA/IL-UW-1065/2020|MT929017.1|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5183T,G28878T +B.1.331 164 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25976A +B.1.165 165 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7851T,C20233T +B.1.338 USA/WA-QDX-2548/2020|MW191307.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25572T,G29747T +B.1.340 USA/COVID20-1144/2020|MW067817.1|20-07-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,T25577G,A28715T +B.1.444 USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G26730T,G27955A,C28854T +B.1.166 172 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1887T +B.1.120 Wales/PHWC-26B12/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C829T,G28371T +B.1.319 USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T3037C,C10851T +B.1.487 USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1734T,G12160T,C23664T +B.1.355 USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.513 Northern_Ireland/NIRE-1021DD/2020|20-03-14 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A6360G,G20709T +B.1.168 Scotland/EDB6052/2020|20-05-08 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18213T,A18818G +B.1.312 184 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9286T,G28899C +B.1.329 B90|LR898037.1|? > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C6406T,G18972A,A21360C +B.1.115 ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G7295T,C28290T +B.1.276 USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G26233T,C27881T +B.1.37 USA/TX-CDC-3009/2020|MT512440.1|20-03-10 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T9708C,C10712T +B.1.13 England/BRIS-130015/2020|20-04-11 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C6361T,C14786T,G20578T +B.1.479 204 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G10631T +B.1.277 Wales/PHWC-2AF12/2020|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C19884T,C26447A +B.1.474 207 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 IHUCOVID-0428|LR794641.1|? > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C6401T,T10480C,C13458T,C20946T +B.1.158 USA/WA-S3458/2020|MW494078.1|20-12-07 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T2300C,C3535T,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 210 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T17838C,G26450T +B.1.442 USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C27416T,G28086T +B.1.112 USA/UT-03892/2020|MT711875.1|20-04-13 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C683T,A6512C +B.1.163 USA/CA-CZB-1414/2020|MT628125.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > G10793T,C29311T +B.1.124 USA/WA-S1281/2020|MT821642.1|20-05-12 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A2161G,G11417T,C16376T +B.1.162 USA/WI-UW-288/2020|MT706396.1|20-04-08 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9195T,T15354C,C21855T +B.1.385 USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 England/ALDP-5D3DEC/2020|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1154G,G29474T +B.1.245 USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1096G,C1420T,G14874T +B.1.9.1 Scotland/EDB5108/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C2113T,C7765T,C17690T,T24923C +B.1.436 265 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9967T,A11246T,A23949G,C29013T +B.1.232 Scotland/EDB3341/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G27987T +B.1.402 USA/CA-CZB-11521/2020|MW276549.1|20-07-18 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4633T,T14643C,C22482T,G27506T +B.1.229 284 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7798T +B.1.421 286 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T +B.1.235 Scotland/EDB3662/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > T5507A,A19855G +B.1.403 USA/CA-CDC-4704/2020|MW001903.1|20-06-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4596A,G19086T,C23114T +B.1.231 England/OXON-B1781/2020|20-05-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C1714T,C27213T +B.1.405 USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G208T,G23522A,A25747C +B.1.447 297 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.234 USA/WI-UW-1288/2020|MW035458.1|20-09-02 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C884T,G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 303 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.258.10 England/ALDP-A2FCA3/2020|20-10-05 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > T7919G,C20451T,G21770A,C24734T +B.1.177.25 380 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.20 England/ALDP-A68CF9/2020|20-10-12 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > G23311C > G6476T,C10626T +B.1.177.18 England/MILK-9F1898/2020|20-09-25 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > G23311C > C5239T,G25440T,C27752T +B.1.1.4 429 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C +B.1.1.8 446 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6573T,C25528T +B.1.1.131 England/PHEC-1B7C1/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18115T +B.1.1.125 Scotland/CVR3919/2020|20-06-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A22330G,T27264G +B.1.1.203 England/ALDP-9558ED/2020|20-06-12 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1800A,G2398A,C23854T,G25972A,G27842T +B.1.1.71 England/BRIS-12F78D/2020|20-03-10 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T11638C,C25584A +B.1.1.157 452 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C17678T +B.1.1.201 456 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 USA/MA-QDX-3180/2021|MW505247.1|21-01-05 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.172 USA/CA-CZB-1885/2020|MT750387.1|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4711C,A6709G,C17125T +B.1.1.192 USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C673T +B.1.1.174 USA/CA-CZB-13945/2020|MW565647.1|20-06-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G443A,T6579C,G28378T +B.1.1.194 England/OXON-AEBC7/2020|20-04-12 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,G24781T,G29706T +B.1.1.38 Wales/PHWC-164485/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9438T,A16653G,G29777T +B.1.1.155 England/ALDP-51F142/2020|20-06-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 England/ALDP-49E391/2020|20-05-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3170T,C6336T,T26260G,C27673T +B.1.1.160 Northern_Ireland/NIRE-10677D/2020|20-05-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C10376T,G18148A,C26208T +B.1.1.165 475 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 476 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T +B.1.1.255 England/ALDP-6839B9/2020|20-07-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T,A27691T +B.1.1.180 USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18652T,T22843C +B.1.1.55 England/NOTT-111117/2020|20-05-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 England/ALDP-68EFBC/2020|20-07-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T13827C,G18756T,C23430T +B.1.1.275 495 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.81 498 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T,C19366T +B.1.1.1 499 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 DK/KL14_Farm1/2020|MT919536.1|20-06-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 511 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.292 513 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3373A +B.1.1.114 521 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T +B.1.1.314 542 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C +B.1.1.98 551 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 Scotland/CVR3185/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C16946T,G26615T +B.1.150 England/BRIS-127A40/2020|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2659T,C17249T,G17722T +B.1.1.164 England/EXET-136ED9/2020|20-04-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2164A,C8733T +B.1.1.97 564 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 England/MILK-95862C/2020|20-06-11 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T,G28557T +B.1.1.237 566 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T +B.1.1.86 570 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.235 572 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C +B.1.1.134 Wales/PHWC-162E7A/2020|20-05-19 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C5497T,C6582T +B.1.1.37 England/ALDP-71D072/2020|20-07-01 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21637T,T26156C,A28169G +B.1.1.151 583 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T +B.1.1.148 England/PHEC-20B81/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C20474T +B.1.1.12 England/MILK-9570D4/2020|20-06-10 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3163C,C7768T +B.1.1.229 DV_IZSPB_236_S50|LR992121.1|20-08-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 England/ALDP-9D8FFC/2020|20-09-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T,T20613C +B.1.1.168 598 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.239 England/LIVE-9BC33/2020|20-04-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11620T +B.1.1.92 England/ALDP-5A2A49/2020|20-06-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3154C,C18981T +B.1.1.26 609 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A +B.1.1.116 USA/WA-S2573/2020|MT831840.1|20-06-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 England/ALDP-9BEB16/2020|20-09-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,G14428T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.10 616 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 618 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 618 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 621 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T +B.1.1.217 625 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19488T +B.1.1.96 628 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 Scotland/EDB300/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2399T,C15240T +B.1.1.178 England/CAMB-1AA438/2020|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.280 England/MILK-9C4087/2020|20-09-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T1543A,C1938T,T4369C,T22020C,C27911T +B.1.1.56 England/PHEC-13ADF/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.132 USA/CA-CZB-2184/2020|MW035923.1|20-05-26 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21205T,G21255C,G28960T +B.1.1.266 Scotland/QEUH-94375E/2020|20-08-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G25785T,G26152T,C27532T,G28321T,C29614T +B.1.1.72 641 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.169 644 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.111 648 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C,C28720T +B.1.1.185 Netherlands/NA_359/2020|LR883961.1|20-04-07 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C7095T,C13502T,A16179G +B.1.1.13 England/CAMB-1AE7FF/2020|20-04-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G4207T,A4208C,C6033T,G11842T +B.1.359 USA/NY-QDX-1993/2020|MW190794.1|20-03-18 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G28376T +B.1.493 89 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G26020T +B.1.496 90 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.494 USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C13252T +B.1.497 103 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +20G 109 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 109 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 USA/MN-QDX-981/2020|MW065078.1|20-03-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C28833T +B.1.336 USA/CA-QDX-2685/2020|MW191430.1|20-03-17 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C9967T,G17590T +B.1.450 117 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G17808T +B.1.370 118 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C24378T +B.1.423 USA/IL-UW-1064/2020|MT929016.1|20-07-26 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 Scotland/EDB2451/2020|20-04-23 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10582T > C1076T,T10963A +B.1.367 Switzerland/240029/2020|LR880608.1|20-08-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,T27622C,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.281 BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C2937T,C21310A +B.1.465 England/SHEF-10B22B9/2020|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > T241C,G3482A,A8821G,C15752T,G24197T,T26066C +B.1.454 IND/GBRC-366a/2020|MT951170.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C26058T,G28851T +B.1.468 220 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T +B.1.36 223 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T +20A.EU2 240 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.160 240 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 243 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.471 England/QEUH-96A29C/2020|20-08-13 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C15654T,C16915T,G21204T,T24202C,G28899T,G29692T +B.1.258.4 England/MILK-A474DA/2020|20-10-06 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > C16394T,C22127T,G23876A,G25947T,C29274T > A6659G,G25218T +B.1.258.5 England/QEUH-AA0035/2020|20-10-20 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > C16394T,C22127T,G23876A,G25947T,C29274T > T8110C,G11417T +B.1.177.21 England/ALDP-9BE8B5/2020|20-09-09 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > T16242A,G28745A +B.1.177.22 369 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T +B.1.177.2 England/ALDP-9BECB9/2020|20-09-10 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > T14721C,C23029T,T25519G +B.1.177.3 England/MILK-9A9D09/2020|20-09-01 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > A1230G,G6344T +B.1.177.4 England/CAMC-AEA62E/2020|20-10-25 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > C66T,G10870T,A11781G,C18329T,C25614T +B.1.1.74 England/QEUH-7A4BBB/2020|20-07-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C2511T,G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 USA/WA-S1922/2020|MT831459.1|20-06-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G242T,C12528A,C18086T +B.1.1.290 USA/WA-S1775/2020|MT834200.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G13513A,C28256T,C29784T +R.1 England/ALDP-B82A0D/2020|20-11-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C4456T,C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +R.2 443 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T +20J/501Y.V3 USA/MD-MDH-0841/2021|MW621433.1|21-01-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > T733C,C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,T26149C,G28167A,C28512G,A28877T,G28878C +B.1.1.251 England/NORW-EE34B/2020|20-03-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > G18315A,C24904T,T25088G +20D 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.284 Japan/TKYE627000_2020/2020|LC593811.1|20-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T4346C,C7728T,C9286T,C10376T,C14708T,C28725T,G29692T +B.1.1.303 England/QEUH-96E605/2020|20-08-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C2841T,G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.113 USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > A11348G,G28690T +B.1.1.179 IND/GBRC455a/2020|MW600436.1|20-12-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G160T,T682C,C900T,G3259T,C4048T,C5700A,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.1.285 USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C823T,A11023G +B.1.1.214 Japan/TKYE622411_2020/2020|LC593808.1|20-07 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T,G29773T +B.1.1.272 England/MILK-A18C8F/2020|20-10-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 Wales/PHWC-30957/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T11654C,G22627A,G28628T +B.1.1.283 LC573289.2|20-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G2305T,G25563C,G28178T +B.1.1.181 TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C2509T,G5015A,C14724T,G24262T,G27703T +B.1.1.33 543 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.279 England/BRIS-125D67/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > C6347T,G18859T +B.1.1.149 569 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.146 England/CAMC-947392/2020|20-07-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C > C7843T,G15438T,C25207T,T25949C,C28453T +B.1.1.308 England/CAMC-A40F67/2020|20-10-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G,A12529G +B.1.1.309 586 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 Northern_Ireland/NIRE-FB369/2020|20-08-31 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > A6900G,G25456T +B.1.1.260 England/LEED-2AA394/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G11230T,C20941T,G23587C +B.1.1.259 592 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 England/ALDP-5D52BE/2020|20-06-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > T13794G,T28494C +B.1.1.299 England/ALDP-4A2BFC/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A20826G,A23207G +B.1.1.301 England/ALDP-49F5B8/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A19650G,T21368C +B.1.1.233 USA/WA-S2598/2020|MT831859.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T,G29254T +B.1.1.65 USA/WA-S820/2020|MT641503.1|20-04-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > A5538T,G17261A,T25783C +L.2 617 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +20F 623 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 623 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.218 England/CAMC-947259/2020|20-07-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +A.2.3 Scotland/CVR2435/2020|20-04-14 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C4540T,C28657T > C15274T,C25714T,C26029A +A.2.2 AUS/VIC995/2020|MT451680.1|20-03-31 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C4540T,C28657T > G17632A,C28311T +B.1.507 USA/VA-DCLS-1147/2020|MT992749.1|20-04 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G,G22487C +B.1.499 USA/NY-QDX-2365/2020|MW191144.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 USA/CA-CZB-2139/2020|MT750510.1|20-05-21 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C5540A,C19145T +B.1.501 USA/NC-QDX-174/2020|MT786825.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,C18693A,G26828T +B.1.505 England/MILK-6166F0/2020|20-07-05 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T22912G,T24805C,C26270T +B.1.282 England/ALDP-955F15/2020|20-06-08 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G25793A,G28907T +B.1.477 England/ALDP-94EB75/2020|20-06-17 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.36.20 221 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.21 England/PHEC-149F0D/2020|20-11-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C1122T,T4057C,G6077T,A10323G,G13858T,G21724T,C27092T,C27434T,G28975T +B.1.36.23 England/MILK-970CE0/2020|20-08-18 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,G26389T,T26876C,C28311T,A28900C +B.1.36.24 England/SHEF-10CC3AA/2020|20-12-17 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C1420T,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 England/MILK-566C5A/2020|20-06-12 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 237 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.177.7 373 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T > C15480T +B.1.177.8 Scotland/QEUH-9B75D3/2020|20-09-04 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T > G8179T,G29778T +B.1.1.289 Wales/PHWC-260AA/2020|20-03-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G25552T > T7168C,G11801A +B.1.1.2 434 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +C.5 Switzerland/300433/2020|LR898634.1|20-09-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,G27382T,T27808C +C.4 SRB/NS19622-16-06/2020|MW327528.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.36.1 England/CAMC-A65DDB/2020|20-10-11 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,C25349A,G25947C,G26062T +B.1.36.28 England/QEUH-9F3FDD/2020|20-09-24 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 England/QEUH-96A85E/2020|20-08-14 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,T23986C,C29555T +B.1.36.27 228 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +N.1 USA/MA_MGH_00693/2020|MT520290.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,T28360C,C29769T +N.4 CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G,C14805T