Mercurial > repos > iuc > usher_matutils
diff test-data/test_19_path_clades.tabular @ 0:79e2ee4e6ebb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"
| author | iuc |
|---|---|
| date | Tue, 11 May 2021 17:54:51 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_19_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,305 @@ +clade root_id from_tree_root +19A 1 +B 1 +B.26 4 > C7423T +B.48 5 > C20270T +B.15 8 > T4949C +B.5 9 > C29635T +B.54 10 > C14805T,G26144T +B.47 England/LIVE-A5D06/2020|20-03-17 > C6681T,A10982G,G11801A +20A 28 > C241T,C3037T,C14408T,A23403G +B.1.108 28 > C241T,C3037T,C14408T,A23403G +B.20 660 > A14940G +B.11 USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 > T514C,C22033A +B.1.14 664 > C25692T +B.27 England/SHEF-BFEBB/2020|20-03-24 > C11747T,T24364G,G29032A +B.19 USA/CA-CZB-1051/2020|MT449644.1|20-04-06 > G7273A,C10277T +B.45 Scotland/CVR780/2020|20-03-27 > C5997T,C12710T,C28854T +19B 676 > C8782T,T28144C +A 676 > C8782T,T28144C +B.10 698 > C6696T +B.23 England/SHEF-BFF21/2020|20-03-25 > C20270T > A18671G,A29683T +B.33 11 > C14805T,G26144T > T17247C +B.28 Scotland/EDB199/2020|20-03-26 > C14805T,G26144T > C22713T,G26031T,G28842T +B.29 England/ALDP-9EE3AC/2020|20-05-06 > C14805T,G26144T > G20991T,C23707T +B.40 20 > C14805T,G26144T > A2480G,C2558T +B.30 21 > C14805T,G26144T > A4236G,T25655C +B.41 22 > C14805T,G26144T > G5572T +B.1.105 England/CAMB-75BD8/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > C18060T,G28514T +B.1.152 England/ALDP-944BD9/2020|20-06-07 > C241T,C3037T,C14408T,A23403G > G1914A,G4399T,T16456C,G27746T +B.1.103 47 > C241T,C3037T,C14408T,A23403G > C25665T,G28325T +B.1.378 49 > C241T,C3037T,C14408T,A23403G > G3871T +B.1.199 USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 > C241T,C3037T,C14408T,A23403G > C2939T,T11698C,C18322T +B.1.139 51 > C241T,C3037T,C14408T,A23403G > A696C +B.1.91 England/EXET-1358BE/2020|20-04-15 > C241T,C3037T,C14408T,A23403G > A20092G,G24077T,T28630G +B.1.350 53 > C241T,C3037T,C14408T,A23403G > G25563T +B.1.222 Scotland/GCVR-172150/2020|20-03-30 > C241T,C3037T,C14408T,A23403G > C1545T,C22879A +B.1.379 274 > C241T,C3037T,C14408T,A23403G > A11782G,G22203T +B.1.182 275 > C241T,C3037T,C14408T,A23403G > A20268G +B.1.5 341 > C241T,C3037T,C14408T,A23403G > C15324T +B.1.215 Scotland/GCVR-173C30/2020|20-04-07 > C241T,C3037T,C14408T,A23403G > G3831A,T7441C +B.1.81 England/BRIS-12468B/2020|20-04-09 > C241T,C3037T,C14408T,A23403G > C1909T,T27576C +B.1.201 England/NORW-E9DF7/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > C2940T,C7765T +B.1.395 398 > C241T,C3037T,C14408T,A23403G > C6990T +B.1.67 Wales/PHWC-29E43/2020|20-04-04 > C241T,C3037T,C14408T,A23403G > G9220A,T26512C +B.1.98 England/LOND-D3534/2020|20-03-27 > C241T,C3037T,C14408T,A23403G > C25350T,T27280C +B.1.76 England/LIVE-A63E5/2020|20-03-18 > C241T,C3037T,C14408T,A23403G > G680T,T17835C +B.1.383 Wales/PHWC-260C8/2020|20-03-26 > C241T,C3037T,C14408T,A23403G > C12242T,C22264T,A25575C +B.1.142 Wales/PHWC-16C6F0/2020|20-06-09 > C241T,C3037T,C14408T,A23403G > T8944C,C14741T,G25552T +B.1.376 407 > C241T,C3037T,C14408T,A23403G > C5506T,G14241T +B.1.23 408 > C241T,C3037T,C14408T,A23403G > T7438C,C29353T +B.1.198 England/BRIS-128DCE/2020|20-04-14 > C241T,C3037T,C14408T,A23403G > A187G,C12213T,C19066A +B.1.153 412 > C241T,C3037T,C14408T,A23403G > G14580T +B.1.70 414 > C241T,C3037T,C14408T,A23403G > C1884T,T26497C +B.1.145 IND/GBRC99/2020|MT509504.1|20-05-06 > C241T,C3037T,C14408T,A23403G > G4866T,C14425A,A21511G +B.1.197 AUS/VIC1239/2020|MT451821.1|20-04-02 > C241T,C3037T,C14408T,A23403G > C6723T,T26094C,G28476T +B.1.143 417 > C241T,C3037T,C14408T,A23403G > C4084T +B.1.187 POL/PL_MCB_75/2020|MW273857.1|20-04-16 > C241T,C3037T,C14408T,A23403G > A544G,C17104T +B.1.414 419 > C241T,C3037T,C14408T,A23403G > G20275A +B.1.93 England/NORT-289814/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > C9165T,C13862T,T21033C,C28836T +B.1.78 Northern_Ireland/NIRE-1022CB/2020|20-03-25 > C241T,C3037T,C14408T,A23403G > C1997T,C28708T,G29422T +20B 426 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C +B.18 England/LIVE-9D7D6/2020|20-04-15 > G29711T > C1218T,C27493T,G27806T +B.51 USA/WI-UW-325/2020|MT706432.1|20-04-24 > G29711T > T2116A,C12880T,C28854T +A.1 USA/MN-MDH-1475/2020|MT920008.1|20-03-23 > C8782T,T28144C > A7966G,A17858G,C18060T,A22422G +B.37 13 > C14805T,G26144T > T17247C > C8078T +B.35 England/BRIS-130965/2020|20-04-13 > C14805T,G26144T > T17247C > A7479G,C10741T,C25572T,C27498T +B.32 15 > C14805T,G26144T > T17247C > A1587G +B.34 Scotland/CVR207/2020|20-03-18 > C14805T,G26144T > T17247C > C988T,G12832A +B.39 17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.1.391 England/CAMB-76515/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25429T > C16289T,T25429G +B.1.104 England/LEED-2A8D10/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G25429T > C13730T,C25916T +B.1.88 34 > C241T,C3037T,C14408T,A23403G > G25429T > C25916T +B.1.248 Scotland/CVR1519/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25429T > A6441G,A28841G +B.1.251 England/MILK-9589F6/2020|20-06-15 > C241T,C3037T,C14408T,A23403G > G25429T > G1141T,C7488T,C14396T +B.1.250 England/BRIS-128441/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G25429T > G10324T,C22713T,C28045T +B.1.392 England/NORW-E8C37/2020|20-04-13 > C241T,C3037T,C14408T,A23403G > G25429T > C3602T,C11460T,A24232G +B.1.252 43 > C241T,C3037T,C14408T,A23403G > G25429T > G1589A,G29474T +B.1.249 England/PHEC-127E8/2020|20-03-28 > C241T,C3037T,C14408T,A23403G > G25429T > G21538T +B.1.110 54 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T +20C 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.371 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.440 211 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T +B.1.223 Scotland/CVR3054/2020|20-04-24 > C241T,C3037T,C14408T,A23403G > A20268G > T6673C,G15438T,C28887T +B.1.419 England/CAMB-79ECC/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > A20268G > A10323G,G21778A +B.1.181 USA/AK-PHL414/2020|MT946886.1|20-06-03 > C241T,C3037T,C14408T,A23403G > A20268G > C2143T,G26062T,C29119T,C29370G +B.1.416.1 310 > C241T,C3037T,C14408T,A23403G > A20268G > C2706T,C25731T,C28833T +B.1.225 England/NORW-E755B/2020|20-05-04 > C241T,C3037T,C14408T,A23403G > A20268G > A4198C,C7011T,C12915T,G21255T +B.1.157 England/PHEC-20A84/2020|20-04-20 > C241T,C3037T,C14408T,A23403G > A20268G > T17126C,C28201T,C28546A +B.1.418 Scotland/EDB4579/2020|20-05-06 > C241T,C3037T,C14408T,A23403G > A20268G > C6472T,C7815T,G13397A,C21682T +B.1.190 340 > C241T,C3037T,C14408T,A23403G > A20268G > G12550A,C20740A,G29734C +B.1.151 USA/CA-QDX-2630/2020|MW191335.1|20-03-15 > C241T,C3037T,C14408T,A23403G > C15324T > C18904T,C21646T,C22208T,G25606T +B.1.220 France/10065EE/2020|MT470176.1|20-03 > C241T,C3037T,C14408T,A23403G > C15324T > T10561C,C26895T,C29013T +B.1.210 IND/GBRC174b/2020|MT607610.1|20-06-05 > C241T,C3037T,C14408T,A23403G > C15324T > C3634T,C22444T,C28854T +B.1.178 345 > C241T,C3037T,C14408T,A23403G > C15324T > G28202A +B.1.147 Switzerland/100210/2020|LR884314.1|20-03-18 > C241T,C3037T,C14408T,A23403G > C15324T > C1191A,G15260A,C25433T +B.1.213 POL/PL_MCB_97/2020|MW273879.1|20-05-10 > C241T,C3037T,C14408T,A23403G > C15324T > C2570T,A7031G,G13617T +B.1.6 350 > C241T,C3037T,C14408T,A23403G > C15324T > C15277T +B.1.96 355 > C241T,C3037T,C14408T,A23403G > A26530G > G11596T +B.1.205 PER/covper091/2020|MW030227.1|20-03-17 > C241T,C3037T,C14408T,A23403G > A26530G > C15277T,A21917G +B.1.35 399 > C241T,C3037T,C14408T,A23403G > C6990T > C29200T +B.1.1.119 427 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A +A.5 678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +B.1.254 35 > C241T,C3037T,C14408T,A23403G > G25429T > C25916T > A10874G,T26677C +B.1.110.2 England/LEED-2A87C7/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G3230A,C23453T +B.1.485 66 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T20037C +B.1.349 68 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18555T,C28892T +B.1.453 USA/CA-CZB-11132/2020|MW276510.1|20-05-23 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2668T,T18240C,T28009C +B.1.489 Wales/PHWC-2E0A2/2020|20-04-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18568T,G24368T,C24621T +B.1.431 81 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C4999T,C13730T +B.1.314 USA/CA-QDX-434/2020|MW064457.1|20-03-20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A2018G,C8697T +B.1.320 USA/CA-CZB-1793/2020|MT750334.1|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C379A,A20503G +B.1.521 108 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T +B.1.294 USA/WI-UW-1119/2020|MT929068.1|20-07-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A19899T,A21464G +B.1.306 USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G23311T,G24977C,C25777T,C29614T +B.1.39 123 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8788C,G26951A +B.1.324 USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7528T,G8213A +B.1.341 USA/WA-QDX-235/2020|MT806806.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12557C,A23534T +B.1.332 127 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1917T +B.1.325 USA/UT-QDX-2224/2020|MW191025.1|20-03-13 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C23191T,A25910C +B.1.293 USA/FL-QDX-1620/2020|MW190373.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5548T,G15906T,C28153T +B.1.40 131 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1076T,C10582T +B.1.323 142 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T9070C +B.1.356 England/LIVE-A91F7/2020|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T13006C,C19186T,C25688T +B.1.268 146 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G3892T +B.1.287 USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C16428T,C20555T,C21772T +B.1.38 150 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G25523T,T27869C +B.1.413 153 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C26625T +B.1.360 154 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27847T +B.1.366 155 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8041C,G22225T +B.1.363 USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C335T,G526C,T16425G +B.1.117 158 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G29705T +B.1.264 161 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11919T +B.1.313 163 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5183T +B.1.331 164 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25976A +B.1.165 165 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7851T,C20233T +B.1.338 166 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25572T +B.1.321 England/BRIS-129D72/2020|20-04-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1593T,C10440T,G29291A +B.1.283 USA/MN-MDH-1616/2020|MT997734.1|20-04-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2878T,G3146A,A27821G +B.1.166 172 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1887T +B.1.120 Wales/PHWC-26B12/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C829T,G28371T +B.1.319 174 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10851T +B.1.267 USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A8252G,G15193A,C25626G +B.1.487 177 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1734T,C23664T +B.1.513 Northern_Ireland/NIRE-1021DD/2020|20-03-14 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A6360G,G20709T +B.1.168 Scotland/EDB6052/2020|20-05-08 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18213T,A18818G +B.1.312 184 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9286T,G28899C +B.1.329 186 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C6406T,G18972A +B.1.315 USA/WI-UW-738/2020|MT772509.1|20-06-30 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T3049C,G4972A,A24129G +B.1.492 189 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T4888A,G28727T +B.1.115 ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G7295T,C28290T +B.1.276 USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G26233T,C27881T +B.1.483 USA/WI-UW-249/2020|MT706376.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C8016T,T15366C,G28903T +B.1.37 200 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C10712T +B.1.13 202 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C14786T,G20578T +B.1.274 USA/UT-04888/2020|MW084559.1|20-05-26 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > A716G,G4960T,G21604T +B.1.479 204 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G10631T +B.1.277 Wales/PHWC-2AF12/2020|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C19884T,C26447A +B.1.481 210 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T17838C,G26450T +B.1.442 USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C27416T,G28086T +B.1.112 251 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A6512C +B.1.163 252 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > G10793T +B.1.124 USA/WA-S1281/2020|MT821642.1|20-05-12 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A2161G,G11417T,C16376T +B.1.111 USA/CA-QDX-1044/2020|MW065007.1|20-03-17 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C1403T,G7798T,C10507T +B.1.162 256 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9195T,T15354C +B.1.438 England/ALDP-5D3DEC/2020|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1154G,G29474T +B.1.245 259 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1096G,G14874T +B.1.232 Scotland/EDB3341/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G27987T +B.1.243 USA/CA-CDC-4728/2020|MW001919.1|20-06-16 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7393T,T24076C,C27804T +B.1.397 USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G1135T,G1148T,G28109T +B.1.229 284 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7798T +B.1.235 Scotland/EDB3662/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > T5507A,A19855G +B.1.403 USA/CA-CDC-4704/2020|MW001903.1|20-06-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4596A,G19086T,C23114T +B.1.238 England/QEUH-544733/2020|20-05-14 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C7564T,C8683T,C12400T +B.1.231 England/OXON-B1781/2020|20-05-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C1714T,C27213T +B.1.405 USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G208T,G23522A,A25747C +B.1.406 England/MILK-977645/2020|20-07-24 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C3695T,C18744T,G25049T +B.1.1.4 429 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C +B.1.1.8 446 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6573T,C25528T +B.1.1.131 England/PHEC-1B7C1/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18115T +B.1.1.125 449 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T27264G +B.1.1.71 451 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T11638C +B.1.1.157 452 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C17678T +B.1.1.250 454 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1912T +B.1.1.189 England/CAMB-7767B/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,C23802T,C28045T +B.1.1.172 459 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.304 USA/VA-DCLS-1212/2020|MW067767.1|20-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C936T,G3259T,A20860G,C28087T +B.1.1.192 USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C673T +B.1.1.174 USA/CA-CZB-13945/2020|MW565647.1|20-06-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G443A,T6579C,G28378T +B.1.1.194 England/OXON-AEBC7/2020|20-04-12 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,G24781T,G29706T +B.1.1.38 468 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.160 473 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.165 475 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 476 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T +B.1.1.105 487 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C12809T +B.1.1.274 489 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25912T +B.1.1.180 490 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T22843C +B.1.1.95 England/ALDP-68EFBC/2020|20-07-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T13827C,G18756T,C23430T +B.1.1.275 495 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.83 497 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T +B.1.1.1 499 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 510 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 511 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.292 Scotland/CVR41/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C823T,C3373A +B.1.1.171 England/BRIS-12DC53/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1437T,G4720A,A4928T,G29745T +B.1.1.114 521 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T +B.1.1.314 542 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C +B.1.1.43 Scotland/CVR3185/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C16946T,G26615T +B.1.150 England/BRIS-127A40/2020|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2659T,C17249T,G17722T +B.1.1.187 Northern_Ireland/NIRE-FB9C1/2020|20-08-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10260G,A10880G,G16197T,C24382T +B.1.1.164 555 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2164A +B.1.1.137 England/SHEF-CBE43/2020|20-04-26 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11396T,C17676T,C18713T +B.1.1.133 559 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8072G +B.1.1.297 England/MILK-9E2BDD/2020|20-09-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A9337G,A20742C,A27086T +B.1.1.237 566 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T +B.1.1.235 England/MILK-8664D7/2020|20-07-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C,C29733T +B.1.173 578 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G20931A +B.1.1.134 579 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6582T +B.1.1.37 582 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 583 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T +B.1.1.59 588 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2638T +B.1.1.16 Wales/PHWC-16881C/2020|20-04-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C222T,C19602T,C21780T,G29779A +B.1.1.148 England/PHEC-20B81/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C20474T +B.1.1.12 595 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3163C +B.1.1.168 598 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.239 606 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11620T +B.1.1.92 England/ALDP-5A2A49/2020|20-06-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3154C,C18981T +B.1.1.26 609 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A +B.1.1.89 612 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G27281T +B.1.1.116 USA/WA-S2573/2020|MT831840.1|20-06-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.67 England/QEUH-96AEF2/2020|20-08-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G7037T,G11447A,C12488T,C21648T +B.1.1.10 616 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A +B.1.1.25 621 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T +B.1.1.217 England/CAMB-82E1B/2020|20-04-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8374T,C19488T +B.1.1.96 628 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 Scotland/EDB300/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2399T,C15240T +B.1.1.56 England/PHEC-13ADF/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.193 635 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G27996T +B.1.1.132 USA/CA-CZB-2184/2020|MW035923.1|20-05-26 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21205T,G21255C,G28960T +B.1.1.169 644 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.263 England/ALDP-952A44/2020|20-06-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5924A,G16852T,G18984T,T21775G +B.1.1.185 651 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.110.3 57 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > C601T,G27915A > G12832T +B.1.110.1 59 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.359 USA/NY-QDX-1993/2020|MW190794.1|20-03-18 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G28376T +B.1.493 89 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G26020T +B.1.494 USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C13252T +B.1.495 USA/WA-S1037/2020|MT642186.1|20-05-03 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > A18671C,C25466T,G28027T,G29742T +B.1.265 114 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C28833T +B.1.336 USA/CA-QDX-2685/2020|MW191430.1|20-03-17 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C9967T,G17590T +B.1.450 117 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G17808T +B.1.370 118 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C24378T +B.1.519 England/BRIS-127AD7/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G29705T > G3638T,G28808T,G29434C +B.1.281 BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C2937T,C21310A +B.1.477 197 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C3811T,G22225A,C22477T +B.1.454 IND/GBRC-366a/2020|MT951170.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C26058T,G28851T +B.1.468 220 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T +B.1.36 223 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.1.158 431 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.289 433 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G11801A,G25552T +B.1.1.290 USA/WA-S1775/2020|MT834200.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G13513A,C28256T,C29784T +B.1.1.5 England/LOND-D6EBE/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C8293T,A11839G,C16575T +B.1.1.222 USA/WA-S860/2020|MT642111.1|20-04-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C4886T,C16178T,A23756G +B.1.1.251 482 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.81 498 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T > C19366T +20D 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.215 England/NORW-E8709/2020|20-04-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G1820A,C6541T,A9737G,A29242G +B.1.1.113 USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > A11348G,G28690T +B.1.1.285 534 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 England/CAMB-7CBD1/2020|20-04-05 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G960T,G26589C,C27128T +B.1.1.49 Wales/PHWC-30957/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T11654C,G22627A,G28628T +B.1.1.283 LC573289.2|20-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G2305T,G25563C,G28178T +B.1.1.139 USA/CA-CZB-4049/2020|MW134382.1|20-08-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C5979T,T27645A,G27666A,G29648T +B.1.1.33 543 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.204 England/MILK-ACCF27/2020|20-10-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A,C18131T,G26640T +B.1.1.279 England/BRIS-125D67/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > C6347T,G18859T +B.1.1.207 576 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 Wales/PHWC-162751/2020|20-05-27 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10948G > C6312A,G18538T,A20136G +B.1.1.308 England/CAMC-A40F67/2020|20-10-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G,A12529G +B.1.1.309 586 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 587 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 590 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 591 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 592 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 600 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.299 England/ALDP-4A2BFC/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A20826G,A23207G +B.1.1.301 England/ALDP-49F5B8/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A19650G,T21368C +B.1.1.233 USA/WA-S2598/2020|MT831859.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T,G29254T +B.1.1.65 USA/WA-S820/2020|MT641503.1|20-04-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > A5538T,G17261A,T25783C +L.2 617 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +B.1.507 USA/VA-DCLS-1147/2020|MT992749.1|20-04 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G,G22487C +B.1.503 USA/CA-CZB-1275/2020|MT533209.1|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C23685T,G25947C,G27703T +B.1.499 USA/NY-QDX-2365/2020|MW191144.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 USA/CA-CZB-2139/2020|MT750510.1|20-05-21 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C5540A,C19145T +B.1.502 USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > G3638A,T13914C,C16217T +B.1.501 USA/NC-QDX-174/2020|MT786825.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,C18693A,G26828T +B.1.504 ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C21731T,G26217T,G29645T +B.1.36.17 227 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C,C7528T,C29555T +C.3 England/ALDP-49EC3C/2020|20-05-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T,G29392T,C29541T +C.14 503 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 PER/covper040/2020|MW030271.1|20-05-05 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C12854T,G20752T,A21131G +C.4 SRB/NS19622-16-06/2020|MW327528.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +N.1 USA/MA_MGH_00693/2020|MT520290.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,T28360C,C29769T +N.4 CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G,C14805T