view test-data/test_13_path_clades.tabular @ 2:e0a0a473fc1e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit 5de7b91f2bda9c351f9512601f899248b7278924
author iuc
date Sun, 17 Mar 2024 18:10:36 +0000
parents 79e2ee4e6ebb
children
line wrap: on
line source

clade	root_id	from_tree_root
20A	28	C241T,C3037T,C14408T,A23403G
B.1.108	28	C241T,C3037T,C14408T,A23403G
B.1.350	53	C241T,C3037T,C14408T,A23403G > G25563T
20C	61	C241T,C3037T,C14408T,A23403G > G25563T > C1059T
B.1.371	61	C241T,C3037T,C14408T,A23403G > G25563T > C1059T
B.1.440	212	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T
B.1.221	268	C241T,C3037T,C14408T,A23403G >  > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T
B.1.505	99	C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C66A,C4455T,C7768T,A8773G,C11916T,C17304T,C18998T,T24805C,C26270T,G29540A
B.1.465	216	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > T241C,A8821G,C15752T,G24197T,T26066C
B.1.182	318	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C
B.1.221.1	269	C241T,C3037T,C14408T,A23403G >  > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T
B.1.221.2	271	C241T,C3037T,C14408T,A23403G >  > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T
20G	109	C241T,C3037T,C14408T,A23403G > G25563T > C1059T >  > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T
B.1.2	109	C241T,C3037T,C14408T,A23403G > G25563T > C1059T >  > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T
B.1.523	217	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T
20E.EU1	361	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T
B.1.177.14	361	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T
B.1.258	319	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A
B.1.427	136	C241T,C3037T,C14408T,A23403G > G25563T > C1059T >  > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T > G9738C,G13713A,C16394T
B.1.429	138	C241T,C3037T,C14408T,A23403G > G25563T > C1059T >  > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T > C2395T,T2597C,C8947T,C12100T,A12878G,T24349C,G27890T
B.1.36	223	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T
B.1.160	238	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A
20B	427	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C
B.1.1.119	427	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C
B.1.1.77	655	C241T,C3037T,C14408T,A23403G >  >  >  >  > T19839C,G28881A,G28882A,G28883C
B.1.177.11	365	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T
B.1.258.16	321	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > C4893T,C7844T,T24925C,C27920T,C29762T
B.1.258.2	336	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G5572T,G28375T
B.1.258.3	338	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G18803T
B.1.1.4	429	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C > T19839C
B.1.177	366	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T
G.1	337	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T
B.1.36.1	225	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T
20A.EU2	240	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T
B.1.316	438	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T25713C,T26604C,C27213T,C28833T,G29527T
R.2	443	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C > T19839C > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T
20D	500	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  > C4002T,G10097A,C13536T,C23731T
C.6	500	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  > C4002T,G10097A,C13536T,C23731T
B.1.1.224	656	C241T,C3037T,C14408T,A23403G >  >  >  >  > T19839C,G28881A,G28882A,G28883C >  > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T
B.1.177.23	381	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T
B.1.258.6	324	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T
B.1.258.7	325	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T
B.1.36.17	227	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T > T1947C >  > C7528T,C29555T
B.1.36.27	228	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T > T1947C >  > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T
B.1.36.23	232	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T >  >  > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C
B.1.36.24	235	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T >  >  > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C
B.1.36.21	230	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T >  > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T
B.1.36.26	231	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C22444T,C28854T >  > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T
B.1.1.294	515	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  > G1820A,C3373A,C6883T,G21724A,G28003C
C.16	506	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  > C4002T,G10097A,C13536T,C23731T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T
C.5	507	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  > C4002T,G10097A,C13536T,C23731T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C
B.1.258.10	327	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C >  > C20451T,G21770A > T7919G
B.1.258.12	328	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C >  > C20451T,G21770A > G18583A
B.1.258.17	333	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C >  > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T
B.1.160.7	242	C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T >  >  > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T >  > C556T,C23525T
B.1.1.114	521	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  > C313T
B.1.177.16	385	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  >  > C28310A
B.1.177.17	383	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  > A408G > C22088T,C29686T
B.1.177.13	384	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  > A408G > G27877T
B.1.258.4	331	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C >  > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T
B.1.258.5	332	C241T,C3037T,C14408T,A23403G >  >  > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C >  > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
B.1.1.227	558	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  >  > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T
B.1.1.303	528	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G
B.1.1.214	Japan/TKYE622411_2020/2020|LC593808.1|20-07	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  > C313T > C8917T,C18167T,G21518T,G28975T,G29773T
M.1	517	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  > G1820A,C3373A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T
B.1.177.26	375	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  >  > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T
B.1.177.21	368	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  > G204T > T16242A
B.1.177.22	369	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  > G204T > C21614T
B.1.1.198	563	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  >  >  > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T
B.1.177.15	393	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  >  >  >  > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T
B.1.177.19	387	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  >  >  > G23311C > T29185A
B.1.177.25	380	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  >  >  > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G
B.1.146	573	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  >  >  >  > C7843T,G15438T,C25207T,G26918T,C28453T,T29464C
B.1.177.10	391	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  >  >  >  > G22346T > G28321A
B.1.177.9	392	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  >  >  >  > G22346T > G21800T,A22053C
B.1.177.20	388	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  >  >  > G23311C >  > C10626T
B.1.177.18	389	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  >  >  >  >  > G23311C >  > G25440T,C27752T
B.1.177.2	377	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  >  >  > A1987G > T14721C,T25519G
B.1.177.6	370	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  > G204T > C21614T >  > C6317T
20I/501Y.V1	618	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  >  >  >  >  > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
B.1.1.7	618	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  >  >  >  >  > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
B.1.177.3	378	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  >  >  > A1987G >  > G6344T
B.1.177.4	379	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  >  >  > A1987G >  > C66T,G10870T,A11781G,C25614T
B.1.177.12	371	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  > G204T > C21614T >  >  > G17944T,C24334T,T24814C,C27769T
B.1.1.219	626	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  >  >  >  >  >  > G5572A,A6366T,G11410A,C19488T,G25776T
B.1.1.315	631	C241T,C3037T,C14408T,A23403G >  >  >  >  > G28881A,G28882A,G28883C >  >  >  >  >  >  >  >  > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G
B.1.177.5	372	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  > G204T > C21614T >  >  >  > T24769C,C25460T
B.1.177.7	373	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  > G204T > C21614T >  >  >  >  > C15480T
B.1.177.8	374	C241T,C3037T,C14408T,A23403G >  >  >  > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T >  > C27944T >  >  > G204T > C21614T >  >  >  >  > G8179T