Mercurial > repos > iuc > usher_matutils
changeset 0:79e2ee4e6ebb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,33 @@ +<macros> + <token name="@TOOL_VERSION@">0.2.1</token> + <token name="@GALAXY_TOOL_VERSION@">galaxy0</token> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_0194</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0540</edam_operation> + </edam_operations> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">usher</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1101/2020.09.26.314971</citation> + <citation type="doi">10.1101/2021.04.03.438321</citation> + </citations> + </xml> + <macro name="sanitize_string" > + <sanitizer invalid_char=""> + <valid initial="string.letters,string.digits"> + <add value="_"/> + <add value="-"/> + <add value="."/> + <add value=":"/> + </valid> + </sanitizer> + </macro> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/matutils.xml Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,501 @@ +<tool id='usher_matutils' name='UShER matUtils' version='@TOOL_VERSION@+@GALAXY_TOOL_VERSION@' profile='20.01'> + <description>analyze, edit, and manipulate mutation annotated tree files</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro='edam_ontology' /> + <expand macro='requirements' /> + <version_command>usher --version</version_command> + <command detect_errors='exit_code'><![CDATA[ + matUtils + $matutils_mode.options_mode + --input-mat $mutation_annotation_file + #if $matutils_mode.options_mode == 'extract' + #if $matutils_mode.operation_mode.operation == 'samples' + #if $matutils_mode.operation_mode.samples + --samples '${matutils_mode.operation_mode.samples}' + #end if + $matutils_mode.operation_mode.prune + #elif $matutils_mode.operation_mode.operation == 'clade' + --clade '${matutils_mode.operation_mode.clade}' + $matutils_mode.operation_mode.prune + #elif $matutils_mode.operation_mode.operation == 'mutation' + --mutation '${matutils_mode.operation_mode.mutation}' + $matutils_mode.operation_mode.prune + #elif $matutils_mode.operation_mode.operation == 'max-epps' + --max-epps $matutils_mode.operation_mode.max_epps + $matutils_mode.operation_mode.prune + #elif $matutils_mode.operation_mode.operation == 'max-parsimony' + --max-parsimony $matutils_mode.operation_mode.max_parsimony + $matutils_mode.operation_mode.prune + #elif $matutils_mode.operation_mode.operation == 'nearest-k' + --nearest-k '${matutils_mode.operation_mode.nearest_k}' + $matutils_mode.operation_mode.prune + #elif $matutils_mode.operation_mode.operation == 'max-branch-length' + --max-branch-length $matutils_mode.operation_mode.max_branch_length + #end if + $matutils_mode.get_representative + $matutils_mode.resolve_polytomies + #if 'used-samples' in $matutils_mode.outputs_extract + --used-samples selected_samples.txt ##$selected_samples + #end if + #if 'sample-paths' in $matutils_mode.outputs_extract + --sample-paths path_mutations.tabular ##$path_mutations + #end if + #if 'clade-paths' in $matutils_mode.outputs_extract + --clade-paths path_clades.tabular ##$path_clades + #end if + #if 'all-paths' in $matutils_mode.outputs_extract + --all-paths all_paths.txt ##$all_paths + #end if + #if 'write-vcf' in $matutils_mode.outputs_extract + --write-vcf subtree_vcf.vcf ##$subtree_vcf + #end if + #if 'write-vcf-no-genotypes' in $matutils_mode.outputs_extract and 'write-vcf' not in $matutils_mode.outputs_extract + --write-vcf subtree_vcf_no_genotypes.vcf --no-genotypes + #end if + #if 'write-mat' in $matutils_mode.outputs_extract + --write-mat mutation_annotated.pb ##$mutation_annotated + #end if + #if 'write-mat-collapsed' in $matutils_mode.outputs_extract and 'write-mat' not in $matutils_mode.outputs_extract + --write-mat mutation_annotated_collapsed.pb --collapsed-tree + #end if + #if 'write-json' in $matutils_mode.outputs_extract + --write-json subtree_json.json ##$subtree_json + #end if + #if 'write-tree' in $matutils_mode.outputs_extract + --write-tree tree_newick.nh ##$tree_newick + #end if + #if 'write-tree-retain-branch' in $matutils_mode.outputs_extract and 'write-tree' not in $matutils_mode.outputs_extract + --write-tree tree_newick_retain_branch.nh --retain-branch-length + #end if + #elif $matutils_mode.options_mode == 'summary' + #if 'samples' in $matutils_mode.summary_options + --samples samples_stats.tabular + #end if + #if 'clades' in $matutils_mode.summary_options + --clades clades_stats.tabular + #end if + #if 'mutations' in $matutils_mode.summary_options + --mutations mutations_stats.tabular + #end if + #if 'aberrant' in $matutils_mode.summary_options + --aberrant aberrant_stats.tabular + #end if + --output-directory ./ + #elif $matutils_mode.options_mode == 'annotate' + #if $matutils_mode.clade_names + --clade-names '${matutils_mode.clade_names}' + #if $matutils_mode.allele_frequency + --allele-frequency $matutils_mode.allele_frequency + #end if + #if $matutils_mode.set_overlap + --set-overlap $matutils_mode.set_overlap + #end if + #if $matutils_mode.mask_frequency + --mask-frequency $matutils_mode.mask_frequency + #end if + #if $matutils_mode.clip_sample_frequency + --clip-sample-frequency $matutils_mode.clip_sample_frequency + #end if + #end if + #if $matutils_mode.clade_to_nid + --clade-to-nid '${matutils_mode.clade_to_nid}' + #end if + $matutils_mode.clear_current + --output-mat output_mat.pb ##$output_mat + #elif $matutils_mode.options_mode == 'uncertainty' + --samples '${matutils_mode.samples}' + #if 'get-parsimony' in $matutils_mode.uncertainty_options + --get-parsimony + #end if + #if 'find-epps' in $matutils_mode.uncertainty_options + --find-epps equally_parsimonious.tabular + #end if + #if 'find-neighborhood' in $matutils_mode.uncertainty_options + --find-neighborhood neighborhood.tabular + #end if + #elif $matutils_mode.options_mode == 'mask' + #if $matutils_mode.restricted_samples + --restricted-samples '${matutils_mode.restricted_samples}' + #end if + #if $matutils_mode.rename_samples + --rename-samples '${matutils_mode.rename_samples}' + #end if + $$matutils_mode.simplify + --output-mat output_mat.pb ##$output_mat + #end if + --threads \${GALAXY_SLOTS:-1} > output_stdout.txt + + ]]> </command> + <inputs> + <param name="mutation_annotation_file" type="data" format="protobuf3" label="Mutation-annotated tree object" help="Load a mutation annotated tree file, in protocol-buffers format (protobuf3)."/> + <conditional name="matutils_mode"> + <param name="options_mode" type="select" label="matUtils mode"> + <option value="extract">Extract: subsetting and converting a MAT pb to other file formats</option> + <option value="summary">Summary: get basic statistics and attribute information about the MAT</option> + <option value="annotate">Annotate: adding clade annotation information to the MAT</option> + <option value="uncertainty">Uncertainty: calculates two specific metrics for sample placement certainty</option> + <option value="mask">Mask: mask specific samples out of the MAT, removing their mutations from visibility</option> + </param> + <when value="extract"> + <conditional name="operation_mode"> + <param name="operation" type="select" label="Operation mode"> + <option value="samples">Select samples by naming them</option> + <option value="clade">Select samples by clade(s)</option> + <option value="mutation">Select samples by mutation</option> + <option value="max-epps">Select samples by parsimonious placements</option> + <option value="max-parsimony">Select samples by parsimonious score</option> + <option value="nearest-k">Select samples by sample and context</option> + <option value="max-branch-length">Remove samples by branch length</option> + </param> + <when value="samples"> + <param argument="--samples" type="data" format="txt" optional="True" label="Select samples by explicitly naming them, one per line in a plain text file" /> + <param argument="--prune" type="boolean" truevalue="--prune" falsevalue="" label="Remove the selected samples" help="Remove the selected samples instead of keeping them in the output files" /> + </when> + <when value="clade"> + <param argument="--clade" type="text" value="" label="Select samples by membership in any of the indicated clade(s), comma delimited- e.g. -c clade1,clade2"> + <expand macro="sanitize_string" /> + </param> + <param argument="--prune" type="boolean" truevalue="--prune" falsevalue="" label="Remove the selected samples" help="Remove the selected samples instead of keeping them in the output files" /> + </when> + <when value="mutation"> + <param argument="--mutation" type="text" value="" label="Select samples by whether they contain any of the indicated mutation(s), comma delimited- e.g. -m mutation1,mutation2"> + <expand macro="sanitize_string" /> + </param> + <param argument="--prune" type="boolean" truevalue="--prune" falsevalue="" label="Remove the selected samples" help="Remove the selected samples instead of keeping them in the output files" /> + </when> + <when value="max-epps"> + <param argument="--max-epps" type="integer" min="0" max="1000" value="" label="Select samples by whether they have less than or equal to the maximum number of indicated equally parsimonious placements" /> + <param argument="--prune" type="boolean" truevalue="--prune" falsevalue="" label="Remove the selected samples" help="Remove the selected samples instead of keeping them in the output files" /> + </when> + <when value="max-parsimony"> + <param argument="--max-parsimony" type="integer" min="0" max="1000" value="" label="Select samples by whether they have less than or equal to the indicated maximum parsimony score (terminal branch length)" /> + <param argument="--prune" type="boolean" truevalue="--prune" falsevalue="" label="Remove the selected samples" help="Remove the selected samples instead of keeping them in the output files" /> + </when> + <when value="nearest-k"> + <param argument="--nearest-k" type="text" value="" label="Select a specific sample and X context samples, formatted as 'sample_name:X'"> + <expand macro="sanitize_string" /> + </param> + <param argument="--prune" type="boolean" truevalue="--prune" falsevalue="" label="Remove the selected samples" help="Remove the selected samples instead of keeping them in the output files" /> + </when> + <when value="max-branch-length"> + <param argument="--max-branch-length" type="integer" min="0" max="1000" value="" label="Remove samples which have branches of greater than the indicated length in their ancestry" /> + </when> + </conditional> + <param argument="--get-representative" type="boolean" truevalue="--get-representative" falsevalue="" label="Select two representative samples per clade" help=" Toggle to automatically select two representative samples per clade currently included in the tree, pruning all other samples from the tree. Applies after other selection steps" /> + <param argument="--resolve-polytomies" type="boolean" truevalue="--resolve-polytomies" falsevalue="" label="Resolve all polytomies" help="Resolve all polytomies by assigning branch length 0 relationships arbitrarily. Applied after selection; prevents recondensing of the MAT" /> + <param name="outputs_extract" type="select" display="checkboxes" multiple="true" label="Select the desired output"> + <option value="used-samples">Write a simple text file containing selected sample names (--used-samples)</option> + <option value="sample-paths">Write the path of mutations defining each sample in the subtree (--sample-paths)</option> + <option value="clade-paths">Write the path of mutations defining each clade in the subtree (--clade-paths)</option> + <option value="all-paths">Write mutations assigned to each node in the subtree in depth-first traversal order (--all-paths)</option> + <option value="write-vcf">Output VCF file representing selected subtree (--write-vcf)</option> + <option value="write-vcf-no-genotypes">Output VCF file representing selected subtree without including genotype column (--write-vcf --no-genotypes) </option> + <option value="write-mat">Write the selected subtree as a mutation annotated tree (--write-math)</option> + <option value="write-mat-collapsed">Write the selected subtree as a collapsed mutation annotated tree (--write-mat --collapsed)</option> + <option value="write-json">Write an Auspice-compatbile json representing the selected subtree (--write-json)</option> + <option value="write-tree"> Write a newick string representing the selected subtree (--write-tree)</option> + <option value="write-tree-retain-branch"> Write a newick string representing the selected subtree without recalculating branch lengths (--write-tree --retain-branch)</option> + </param> + </when> + <when value="summary"> + <param name="summary_options" type="select" display="checkboxes" multiple="true" label="Select statistics and attribute information"> + <option value="general">Number of nodes, number of samples, number of condensed nodes, and total tree parsimony</option> + <option value="samples">Samples in the tree and their parsimony score (--samples)</option> + <option value="clades">Clades and the count of associated samples in the tree (--clades)</option> + <option value="mutations">Mutations in the tree and their occurrence count (--mutations)</option> + <option value="aberrant">Potentially problematic nodes (--aberrant)</option> + </param> + </when> + <when value="annotate"> + <param argument="--clade-names" type="data" format="tabular" optional="True" label="File containing clade asssignments of samples" help="An algorithm automatically locates and annotates clade root nodes."/> + <param argument="--clade-to-nid" type="data" format="tabular" optional="True" label="File mapping clades to their respective internal node identifiers" help="Internal node names are not maintained when saving and loading from a .pb file. It is not guaranteed that internal node names will correspond directly between two .pb files, so use the direct assignment method with caution."/> + <param argument="--set-overlap" type="float" min="0" max="1" value="" optional="True" label="Minimum fraction of the lineage samples" help="Minimum fraction of the lineage samples that should be desecendants of the assigned clade root. Used only with --clade-names" /> + <param argument="--clear-current" type="boolean" truevalue="--clear-current" falsevalue="" label="Remove current annotations" help="Use to remove current annotations before applying new annotations." /> + <param argument="--allele-frequency" type="float" min="0" max="1" value="" optional="True" label="Minimum allele frequency for finding the best clade root" help="Minimum allele frequency in input samples for finding the best clade root. Used only with 'remove current annotation'. Used only with --clade-names" /> + <param argument="--mask-frequency" type="float" min="0" max="1" value="" optional="True" label="Minimum allele frequency for being masked" help="Minimum allele frequency in input samples that should be masked for finding the best clade root. Used only with --clade-names" /> + <param argument="--clip-sample-frequency" type="float" min="0" max="1" value="" optional="True" label="Clip sample frequency" help="Maximum proportion of samples in a branch that are exemplars from --clade-names to consider when sorting candidate clade root nodes." /> + </when> + <when value="uncertainty"> + <param argument="--samples" type="data" format="txt" label="Select samples by explicitly naming them, one per line in a plain text file" /> + <param name="uncertainty_options" type="select" display="checkboxes" multiple="true" label="Metrics for sample placement certainty"> + <option value="get-parsimony">Total tree parsimony score (--get-parsimony)</option> + <option value="find-epps">Number of equally parsimonious placements for each sample (--find-epps)</option> + <option value="find-neighborhood">Neighborhood size scores (--find-neighborhood)</option> + </param> + </when> + <when value="mask"> + <param argument="--restricted-samples" type="data" format="txt" optional="True" label="Select samples by explicitly naming them, one per line in a plain text file" help="Sample names to restrict. Use to perform masking"/> + <param argument="--rename-samples" type="data" format="tabular" optional="True" label="TSV file containing names of the samples to be renamed and their new names"/> + <param argument="--simplify" type="boolean" truevalue="--simplify" falsevalue="" label="Use to automatically remove identifying information from the tree, including all sample names and private mutations" /> + </when> + </conditional> + </inputs> + <outputs> + <data name="selected_samples" format="txt" from_work_dir='selected_samples.txt' label="${tool.name} on ${on_string}: selected samples"> + <filter>matutils_mode['options_mode'] == 'extract' and 'used-samples' in matutils_mode['outputs_extract'] </filter> + </data> + <data name="path_mutations" format="tabular" from_work_dir='path_mutations.tabular' label="${tool.name} on ${on_string}: sample mutations"> + <filter>matutils_mode['options_mode'] == 'extract' and 'sample-paths' in matutils_mode['outputs_extract']</filter> + </data> + <data name="path_clades" format="tabular" from_work_dir='path_clades.tabular' label="${tool.name} on ${on_string}: clade mutations"> + <filter>matutils_mode['options_mode'] == 'extract' and 'clade-paths' in matutils_mode['outputs_extract']</filter> + </data> + <data name="all_paths" format="txt" from_work_dir='all_paths.txt' label="${tool.name} on ${on_string}: node mutations"> + <filter>matutils_mode['options_mode'] == 'extract' and 'all-paths' in matutils_mode['outputs_extract']</filter> + </data> + <data name="subtree_vcf" format="vcf" from_work_dir='subtree_vcf.vcf' label="${tool.name} on ${on_string}: subtree"> + <filter>matutils_mode['options_mode'] == 'extract' and 'write-vcf' in matutils_mode['outputs_extract']</filter> + </data> + <data name="subtree_no_genotype_vcf" format="vcf" from_work_dir='subtree_vcf_no_genotypes.vcf' label="${tool.name} on ${on_string}: subtree without genotype"> + <filter>matutils_mode['options_mode'] == 'extract' and 'write-vcf-no-genotypes' in matutils_mode['outputs_extract'] and 'write-vcf' not in matutils_mode['outputs_extract']</filter> + </data> + <data name="mutation_annotated" format="protobuf3" from_work_dir='mutation_annotated.pb' label="${tool.name} on ${on_string}: mutation annotated tree"> + <filter>matutils_mode['options_mode'] == 'extract' and 'write-mat' in matutils_mode['outputs_extract'] </filter> + </data> + <data name="mutation_annotated_collapsed" format="protobuf3" from_work_dir='mutation_annotated_collapsed.pb' label="${tool.name} on ${on_string}: mutation annotated tree collapsed"> + <filter>matutils_mode['options_mode'] == 'extract' and 'write-mat-collapse' in matutils_mode['outputs_extract'] and 'write-mat' not in matutils_mode['outputs_extract']</filter> + </data> + <data name="subtree_json" format="json" from_work_dir='subtree_json.json' label="${tool.name} on ${on_string}: subtree (json)"> + <filter>matutils_mode['options_mode'] == 'extract' and 'write-json' in matutils_mode['outputs_extract']</filter> + </data> + <data name="tree_newick" format="newick" from_work_dir='tree_newick.nh' label="${tool.name} on ${on_string}: subtree (newick)"> + <filter>matutils_mode['options_mode'] == 'extract' and 'write-tree' in matutils_mode['outputs_extract']</filter> + </data> + <data name="tree_newick_retain_branch" format="newick" from_work_dir='tree_newick_retain_branch.nh' label="${tool.name} on ${on_string}: subtree retain branch (newick)"> + <filter>matutils_mode['options_mode'] == 'extract' and 'write-tree-retain-branch' in matutils_mode['outputs_extract'] and 'write-tree' not in matutils_mode['outputs_extract']</filter> + </data> + <data name="general_stats" format="txt" from_work_dir='output_stdout.txt' label="${tool.name} on ${on_string}: general stats"> + <filter>matutils_mode['options_mode'] == 'summary' and 'general' in matutils_mode['summary_options']</filter> + </data> + <data name="samples_stats" format="tabular" from_work_dir='samples_stats.tabular' label="${tool.name} on ${on_string}: samples stats"> + <filter>matutils_mode['options_mode'] == 'summary' and 'samples' in matutils_mode['summary_options']</filter> + </data> + <data name="clades_stats" format="tabular" from_work_dir='clades_stats.tabular' label="${tool.name} on ${on_string}: clades stats"> + <filter>matutils_mode['options_mode'] == 'summary' and 'clades' in matutils_mode['summary_options']</filter> + </data> + <data name="mutations_stats" format="tabular" from_work_dir='mutations_stats.tabular' label="${tool.name} on ${on_string}: mutations stats"> + <filter>matutils_mode['options_mode'] == 'summary' and 'mutations' in matutils_mode['summary_options']</filter> + </data> + <data name="aberrant_stats" format="tabular" from_work_dir='aberrant_stats.tabular' label="${tool.name} on ${on_string}: aberrant stats"> + <filter>matutils_mode['options_mode'] == 'summary' and 'aberrant' in matutils_mode['summary_options']</filter> + </data> + <data name="output_mat" format="protobuf3" from_work_dir='output_mat.pb' label="${tool.name} on ${on_string}: mutation annotated tree"> + <filter>matutils_mode['options_mode'] == 'annotate' or matutils_mode['options_mode'] == 'mask'</filter> + </data> + <data name="total_parsimony_tree" format="txt" from_work_dir='output_stdout.txt' label="${tool.name} on ${on_string}: parsimony tree"> + <filter>matutils_mode['options_mode'] == 'uncertainty' and 'get-parsimony' in matutils_mode['uncertainty_options']</filter> + </data> + <data name="equally_parsimonious" from_work_dir='equally_parsimonious.tabular' format="tabular" label="${tool.name} on ${on_string}: equally parsimonious placements"> + <filter>matutils_mode['options_mode'] == 'uncertainty' and 'find-epps' in matutils_mode['uncertainty_options']</filter> + </data> + <data name="neighbourhood" format="tabular" from_work_dir='neighborhood.tabular' label="${tool.name} on ${on_string}: neighborhood size scores"> + <filter>matutils_mode['options_mode'] == 'uncertainty' and 'find-neighborhood' in matutils_mode['uncertainty_options']</filter> + </data> + </outputs> + <tests> + <test expect_num_outputs="3"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="extract"/> + <param name="resolve_polytomies" value="true"/> + <param name="outputs_extract" value="used-samples,sample-paths,clade-paths"/> + <conditional name="operation_mode"> + <param name="operation" value="samples"/> + <param name="samples" value="sample_names.txt"/> + <param name="prune" value="true"/> + </conditional> + </conditional> + <output name="selected_samples" file="test_13_sample_names.txt" ftype="txt"/> + <output name="path_mutations" file="test_13_path_mutations.tabular" ftype="tabular"/> + <output name="path_clades" file="test_13_path_clades.tabular" ftype="tabular"/> + </test> + <test expect_num_outputs="5"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="extract"/> + <param name="outputs_extract" value="used-samples,sample-paths,clade-paths,all-paths,write-vcf"/> + <conditional name="operation_mode"> + <param name="operation" value="samples"/> + <param name="samples" value="sample_names.txt"/> + </conditional> + </conditional> + <output name="selected_samples" file="test_14_sample_names.txt" ftype="txt"/> + <output name="path_mutations" file="test_14_path_mutations.tabular" ftype="tabular"/> + <output name="path_clades" file="test_14_path_clades.tabular" ftype="tabular"/> + <output name="all_paths" file="test_14_all_paths.txt" ftype="txt"/> + <output name="subtree_vcf" ftype="vcf"> + <assert_contents> + <has_size value="7219100" delta="300"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="4"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="extract"/> + <param name="outputs_extract" value="write-vcf-no-genotypes,write-mat,write-json,write-tree"/> + <conditional name="operation_mode"> + <param name="operation" value="mutation"/> + <param name="mutation" value="C241T"/> + </conditional> + </conditional> + <output name="subtree_no_genotype_vcf" file="test_15_subtree_no_genotype.vcf" ftype="vcf"/> + <output name="mutation_annotated" file="test_15_mutation_annotated_tree.pb" ftype="protobuf3"/> + <output name="subtree_json" file="test_15_subtree.json" ftype="json"/> + <output name="tree_newick" file="test_15_tree.nh" ftype="newick"/> + </test> + <test expect_num_outputs="3"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="extract"/> + <param name="outputs_extract" value="used-samples,sample-paths,write-vcf"/> + <conditional name="operation_mode"> + <param name="operation" value="clades"/> + <param name="clade" value="B.1.160.7, B.1.258.4"/> + </conditional> + </conditional> + <output name="selected_samples" file="test_16_sample_names.txt" ftype="txt"/> + <output name="path_mutations" file="test_16_path_mutations.tabular" ftype="tabular"/> + <output name="subtree_vcf" ftype="vcf"> + <assert_contents> + <has_size value="8999600" delta="300"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="5"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="extract"/> + <param name="outputs_extract" value="used-samples,sample-paths,clade-paths,all-paths,write-vcf"/> + <conditional name="operation_mode"> + <param name="operation" value="max-epps"/> + <param name="max_epps" value="0"/> + </conditional> + </conditional> + <output name="selected_samples" file="test_17_sample_names.txt" ftype="txt"/> + <output name="path_mutations" file="test_17_path_mutations.tabular" ftype="tabular"/> + <output name="path_clades" file="test_17_path_clades.tabular" ftype="tabular"/> + <output name="all_paths" file="test_17_all_paths.txt" ftype="txt"/> + <output name="subtree_vcf" ftype="vcf"> + <assert_contents> + <has_size value="8999600" delta="300"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="5"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="extract"/> + <param name="outputs_extract" value="used-samples,sample-paths,clade-paths,all-paths,write-vcf"/> + <conditional name="operation_mode"> + <param name="operation" value="max-parsimony"/> + <param name="max_parsimony" value="1"/> + </conditional> + </conditional> + <output name="selected_samples" file="test_18_sample_names.txt" ftype="txt"/> + <output name="path_mutations" file="test_18_path_mutations.tabular" ftype="tabular"/> + <output name="path_clades" file="test_18_path_clades.tabular" ftype="tabular"/> + <output name="all_paths" file="test_18_all_paths.txt" ftype="txt"/> + <output name="subtree_vcf" ftype="vcf"> + <assert_contents> + <has_size value="1183300" delta="300"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="3"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="extract"/> + <param name="outputs_extract" value="used-samples,sample-paths,clade-paths"/> + <conditional name="operation_mode"> + <param name="operation" value="max-branch-length"/> + <param name="max_branch_length" value="2"/> + </conditional> + </conditional> + <output name="selected_samples" file="test_19_sample_names.txt" ftype="txt"/> + <output name="path_mutations" file="test_19_path_mutations.tabular" ftype="tabular"/> + <output name="path_clades" file="test_19_path_clades.tabular" ftype="tabular"/> + </test> + <test expect_num_outputs="1"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="summary"/> + <param name="summary_options" value="general"/> + </conditional> + <output name="general_stats" file="test_20_general_stats.txt" ftype="txt"/> + </test> + <test expect_num_outputs="4"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="summary"/> + <param name="summary_options" value="samples,clades,mutations,aberrant"/> + </conditional> + <output name="samples_stats" file="test_21_sample_stats.tabular" ftype="tabular"/> + <output name="clades_stats" file="test_21_clades_stats.tabular" ftype="tabular"/> + <output name="mutations_stats" file="test_21_mutations_stats.tabular" ftype="tabular"/> + <output name="aberrant_stats" file="test_21_aberrant_stats.tabular" ftype="tabular"/> + </test> + <test expect_num_outputs="1"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="uncertainty"/> + <param name="samples" value="sample_names.txt"/> + <param name="uncertainty_options" value="get-parsimony"/> + </conditional> + <output name="total_parsimony_tree" file="test_22_total_parsimony_tree.txt" ftype="txt"/> + </test> + <test expect_num_outputs="2"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="uncertainty"/> + <param name="samples" value="sample_names.txt"/> + <param name="uncertainty_options" value="find-epps,find-neighborhood"/> + </conditional> + <output name="equally_parsimonious" file="test_23_equally_parsimoniou.tabular" ftype="tabular"/> + <output name="neighbourhood" file="test_23_neighbourhood.tabular" ftype="tabular"/> + </test> + <test expect_num_outputs="1"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="mask"/> + <param name="restricted_samples" value="sample_names.txt"/> + <param name="simplify" value="true"/> + </conditional> + <output name="output_mat" file="test_24_restricted.pb" ftype="protobuf3"/> + </test> + <test expect_num_outputs="1"> + <param name="mutation_annotation_file" value="mutation_annotation.pb"/> + <conditional name="matutils_mode"> + <param name="options_mode" value="mask"/> + <param name="rename_samples" value="rename_samples.tabular"/> + </conditional> + <output name="output_mat" file="test_25_renamed.pb" ftype="protobuf3"/> + </test> + </tests> + <help><![CDATA[ + +.. class:: infomark + +**Purpose** + +matUtils is a suite of tools used to analyze, edit, and manipulate mutation annotated tree (.pb) files. + +---- + +.. class:: infomark + +**matUtils Common Options** + +**Extract**: matUtils extract serves as a flexible prebuilt pipeline, and serves as the primary tool for subsetting and converting a MAT pb to other file formats. +**Sumary**: matUtils summary is used to get basic statistics and attribute information about the mat. +**Annotate**: matUtils annotate is a function for adding clade annotation information to the pb. +**Uncertainly**: matUtils uncertainty calculates two specific metrics for sample placement certainty. These metrics can be very important to support contact tracing and reliable identification of the origin of a newly placed sample. +**Mask**: matUtils mask is used to mask specific samples out of the pb, removing their mutations from visibility. + +You can find more information in the `matUtils official documentation page <https://usher-wiki.readthedocs.io/en/latest/matUtils.html>`_. + + ]]> </help> + <expand macro="citations" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/global_phylo.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Shanghai_SH0007_2020,Hangzhou_ZJU-07_2020,Wuhan_IPBCAMS-WH-03_2019,Wuhan_WH01_2019,Wuhan_WIV07_2019,Shanghai_SH0093_2020,Wuhan_HBCDC-HB-01_2019,Wuhan_IPBCAMS-WH-01_2019,Wuhan_IVDC-HB-04_2020,Wuhan_IVDC-HB-05_2019,Wuhan_WIV05_2019,Sweden_01_2020,Taiwan_2_2020,USA_CA2_2020,Shanghai_SH0040_2020,Singapore_7_2020,Australia_VIC02_2020,France_IDF0515_2020,Hangzhou_ZJU-01_2020,Shanghai_SH0037_2020,Nepal_61_2020,Wuhan_HBCDC-HB-03_2019,Wuhan_IVDC-HB-01_2019,Wuhan_WIV06_2019,Wuhan_WIV04_2019,China_WH-09_2020,Wuhan_IPBCAMS-WH-04_2019,Wuhan_IPBCAMS-WH-02_2019,Wuhan_WH03_2020,Jiangxi_IVDC-JX-002_2020,Zhejiang_WZ-01_2020,Japan_KY-V-029_2020,Hangzhou_ZJU-03_2020,Zhejiang_WZ-02_2020,Netherlands_Utrecht_12_2020,Nonthaburi_61_2020,Nonthaburi_74_2020,Hangzhou_ZJU-05_2020,Hangzhou_HZ-1_2020,Singapore_1_2020,Taiwan_NTU02_2020,England_SHEF-BFD36_2020,France_IDF0626_2020,Malaysia_MKAK-CL-2020-7554_2020,Cambodia_0012_2020,Finland_1_2020,England_200641094_2020,England_200690756_2020,(USA_CA-CDPH-UC2_2020,(USA_CA9_2020,(USA_CA-CDPH-UC3_2020,USA_CA-CDPH-UC4_2020)5)4)3,(Australia_NSW08_2020,Australia_NSW10_2020)6,(Germany_NRW-10_2020,Germany_NRW-09_2020,Poland_PL_P1_2020,(Germany_NRW-04_2020,Germany_NRW-07_2020,(Germany_NRW-08_2020,(Germany_NRW-01_2020,Netherlands_Limburg_4_2020)10)9)8,(Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020)11)7,(Malaysia_MKAK-CL-2020-5045_2020,(Singapore_2_2020,(Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020)15)14)13,(Jiangsu_JS01_2020,Shanghai_SH0031_2020)16,(Australia_NSW02_2020,(Hangzhou_ZJU-06_2020,(Shanghai_SH0085_2020,Shanghai_SH0094_2020)19)18)17,(India_1-27_2020,Shanghai_SH0011_2020,Fujian_13_2020,(Singapore_11_2020,USA_WI1_2020)21)20,(Wuhan_HBCDC-HB-05_2020,Shandong_IVDC-SD-001_2020,England_200960041_2020,Australia_NSW05_2020,(Georgia_Tb-82_2020,Australia_NSW09_2020,(Canada_BC_25211_2020,Kuwait_KU09_2020)24,(Kuwait_KU18_2020,Kuwait_KU12_2020,Australia_NSW06_2020)25)23,(Shanghai_SH0022_2020,Shanghai_SH0023_2020)26,(Taiwan_CGMH-CGU-04_2020,(Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020)28)27,Kuwait_KU17_2020,(Canada_BC_17397_2020,Canada_BC_13297_2020)31,(Australia_QLD09_2020,Australia_NSW07_2020)32,(USA_NY1-PV08001_2020,Canada_BC_37_0-2_2020,Canada_BC_69243_2020,(England_200990002_2020,Germany_BavPat2_2020)34)33)22,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020)35,(Jiangsu_JS02_2020,Shanghai_SH0008_2020,USA_CA5_2020)36,(Wuhan_WIV02_2019,(USA_CA8_2020,Wuhan_HBCDC-HB-02_2019)38)37,(Australia_NSW03_2020,Australia_VIC03_2020)39,(Chongqing_IVDC-CQ-001_2020,(Japan_Hu_DP_Kng_19-027_2020,(Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020)42)41)40,(Japan_NA-20-05-1_2020,Taiwan_CGMH-CGU-01_2020)43,(Hangzhou_ZJU-09_2020,Australia_VIC01_2020)44,(Japan_OS-20-07-1_2020,Chongqing_ZX01_2020)45,(USA_MA1_2020,(Shanghai_SH0058_2020,((USA_CA3_2020,USA_CA4_2020)49,(Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020)50)48)47)46,((France_B2334_2020,France_B2340_2020)52,((Georgia_Tb-468_2020,Georgia_Tb-537_2020,Georgia_Tb-54_2020)54,Italy_SPL1_2020)53)51,(Jiangsu_IVDC-JS-001_2020,Hangzhou_HZCDC0001_2020)57,(Hangzhou_ZJU-04_2020,Jiangsu_JS03_2020)58,(England_20102000106_2020,(England_09c_2020,(Brazil_ES-225_2020,England_20100001406_2020,(England_200940527_2020,(England_200990725_2020,England_200990724_2020)63)62)61)60,(England_200960515_2020,(Finland_FIN01032020_2020,(Finland_FIN-274_2020,Finland_FIN03032020B_2020)66)65)64,(Brazil_SPBR-10_2020,Switzerland_1000477102_2020,Brazil_SPBR-02_2020,England_200990006_2020,Netherlands_Utrecht_18_2020)67)59,(USA_CA6_2020,Taiwan_4_2020)68,(Netherlands_Utrecht_19_2020,Netherlands_Limburg_6_2020,Netherlands_Naarden_1364774_2020,(Netherlands_Dalen_1363624_2020,Netherlands_Loon_op_zand_1363512_2020)70,(Netherlands_Oss_1363500_2020,Netherlands_Tilburg_1363354_2020)71)69,(France_RA739_2020,England_200690300_2020)72,(Singapore_8_2020,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020)76)75,(Shanghai_SH0086_2020,(Finland_FIN-114_2020,(Germany_BavPat1_2020,Shanghai_SH0014_2020)79)78,(Finland_FIN-25_2020,Belgium_DB-03023_2020,Denmark_SSI-102_2020,Denmark_SSI-02_2020,Belgium_BM-03012_2020,England_20100022706_2020,Denmark_SSI-04_2020,Taiwan_NTU03_2020,Finland_FIN03032020A_2020,Switzerland_GE4984_2020,Switzerland_AG0361_2020,Finland_FIN-266_2020,Italy_CDG1_2020,Luxembourg_Lux1_2020,Japan_SMU-0311S3_2020,Netherlands_Zeewolde_1365080_2020,Georgia_Tb-477_2020,Japan_SMU-0311S2_2020,Denmark_SSI-03_2020,Netherlands_Gelderland_2_2020,Brazil_SPBR-01_2020,Georgia_Tb-273_2020,Ireland_Limerick-19934_2020,Belgium_SH-03014_2020,(((England_20100004706_2020,England_20100004806_2020)83,(England_20100005406_2020,England_200990660_2020)84)82,(England_20100121006_2020,England_20100121007_2020)85)81,(France_HF2174_2020,France_GE1977_2020,France_HF1684_2020,(France_HF1995_2020,France_HF2239_2020)87)86,Belgium_VAG-03013_2020,(Netherlands_Utrecht_1363564_2020,(Netherlands_Utrecht_6_2020,Netherlands_Utrecht_1363628_2020)90)89,(England_20099107406_2020,Georgia_Tb_2020)91,(Brazil_SPBR-06_2020,Brazil_SPBR-05_2020)92,(Brazil_SPBR-09_2020,France_GE1973_2020)93,(France_BFC2094_2020,France_BFC2147_2020,((France_HF2196_2020,Switzerland_GE6679_2020)96,(Switzerland_BE2536_2020,Switzerland_GE4135_2020)97)95)94,(Switzerland_GE5373_2020,Switzerland_GE3121_2020,Panama_328677_2020,Georgia_Tb-712_2020,Hungary_mbl1_2020,Spain_Galicia201663_2020)98,(Nigeria_Lagos01_2020,Netherlands_Delft_1363424_2020,Denmark_SSI-01_2020,England_200990723_2020,Switzerland_TI2045_2020,Switzerland_1000477377_2020,Denmark_SSI-05_2020,Chile_Santiago-2_2020,Brazil_SPBR-14_2020,Finland_FIN-318_2020,Netherlands_Limburg_5_2020,Belgium_DBA-03032_2020,Switzerland_SZ1417_2020,Belgium_GMH-03022_2020,Netherlands_Utrecht_14_2020,Netherlands_Utrecht_1_2020,Finland_FIN03032020C_2020,Netherlands_Berlicum_1363564_2020,(Netherlands_Limburg_3_2020,Netherlands_Utrecht_2_2020)100,(Switzerland_GR2988_2020,Switzerland_GR3043_2020)101,(Switzerland_VD0503_2020,Switzerland_VD5615_2020)102,(Switzerland_1000477797_2020,Brazil_BA-312_2020,(Switzerland_GE8102_2020,(Brazil_SPBR-08_2020,Brazil_SPBR-13_2020)105)104)103,(Finland_FIN-313_2020,Netherlands_Utrecht_15_2020)106,(Mexico_CDMX-InDRE_01_2020,Vietnam_39607_2020,Netherlands_Overijssel_2_2020,(Switzerland_1000477796_2020,England_20099038206_2020)108,(Vietnam_CM296_2020,Vietnam_CM295_2020)109)107,(Switzerland_GE1422_2020,Netherlands_Diemen_1363454_2020,(Switzerland_GE1402_2020,(Switzerland_AG7120_2020,Netherlands_Helmond_1363548_2020)112)111)110,(Switzerland_BE6651_2020,Netherlands_NoordHolland_2_2020,(Switzerland_GE3895_2020,(Switzerland_GE0199_2020,Switzerland_BL0902_2020,Switzerland_GE9586_2020,Switzerland_1000477806_2020,Switzerland_BS0914_2020)115)114)113,Belgium_BC-03016_2020,(Switzerland_1000477757_2020,Brazil_SPBR-12_2020,Germany_Baden-Wuerttemberg-1_2020)117,(Netherlands_NoordHolland_1_2020,Netherlands_Utrecht_10_2020,Germany_NRW-011_2020,Netherlands_Utrecht_13_2020,Netherlands_Gelderland_3_2020,Finland_FIN-508_2020,Brazil_SPBR-04_2020,Brazil_SPBR-07_2020,(Netherlands_Utrecht_4_2020,Netherlands_Limburg_2_2020)119,(Brazil_SPBR-03_2020,Netherlands_Utrecht_5_2020,Netherlands_Gelderland_1_2020,Ireland_Dublin-19072_2020)120,(Netherlands_Utrecht_7_2020,Netherlands_Overijssel_1_2020)121)118,(Belgium_UMF-03025_2020,(Belgium_DBD-03024_2020,Belgium_QKJ-03015_2020)123)122)99,(Netherlands_NoordHolland_3_2020,Netherlands_Flevoland_1_2020)124,(NetherlandsL_Houten_1363498_2020,Italy_UniSR1_2020,France_N1620_2020,(Switzerland_TI9486_2020,(France_N2223_2020,Netherlands_Utrecht_3_2020)127)126)125,(Georgia_Tb-673_2020,France_B2330_2020,France_PL1643_2020,France_HF1988_2020,France_B2348_2020,(France_B2351_2020,France_B2344_2020,France_B2349_2020)129,(France_IDF2256_2020,France_HF1871_2020)130,(France_B2337_2020,Finland_FIN-455_2020,(France_B2336_2020,France_B2335_2020)132,(France_B2343_2020,France_B2346_2020)133)131,Netherlands_Haarlem_1363688_2020)128,(Ireland_Limerick-19933_2020,(Denmark_SSI-09_2020,Ireland_Limerick-19935_2020)136,(Netherlands_Utrecht_11_2020,Netherlands_Utrecht_8_2020)137)135)80)77)2,(Wuhan_HBCDC-HB-06_2020,Wuhan_HBCDC-HB-02_2020,Wuhan_HBCDC-HB-04_2020,Shanghai_SH0075_2020,Shanghai_SH0010_2020,Tianmen_HBCDC-HB-07_2020,Shanghai_SH0041_2020,India_1-31_2020,Wuhan_WH04_2020,Wuhan_HBCDC-HB-03_2020,Shanghai_SH0009_2020,Malaysia_MKAK-CL-2020-5096_2020,Hangzhou_ZJU-02_2020,(France_GE1583_2020,Georgia_Tb-390_2020,Spain_Valencia6_2020,Spain_CastillayLeon201437_2020,(Spain_Valencia4_2020,Chile_Santiago_op2d1_2020,Spain_Valencia5_2020,Chile_Santiago-1_2020,(Chile_Santiago_op3d1_2020,Chile_Santiago_op4d1_2020)141)140)139,(Sichuan_IVDC-SC-001_2020,USA_CA1_2020,USA_IL2_2020,(Vietnam_CM99_2020,(Shanghai_SH0032_2020,(Vietnam_VR03-38142_2020,Vietnam_38142_2020)148)147)145)143,(Shanghai_SH0035_2020,Australia_QLD02_2020,(Australia_QLD03_2020,(Australia_VIC07_2020,(Australia_QLD01_2020,Shanghai_SH0002_2020,Shanghai_SH0003_2020,USA_CA7_2020,(Netherlands_Utrecht_16_2020,Netherlands_Utrecht_17_2020)153,(Australia_QLD04_2020,Singapore_4_2020)154)152)151)150)149,(Shandong_LY003_2020,Shandong_LY005_2020,(Shandong_LY006_2020,(Shandong_LY004_2020,Shandong_LY008_2020)157)156)155,(Chile_Talca-1_2020,Chile_Talca-2_2020)158,England_02_2020,(Chongqing_YC01_2020,(((USA_CA-CDPH-UC7_2020,USA_CA-CDPH-UC9_2020)163,(USA_CA-CDPH-UC5_2020,USA_CA-CDPH-UC6_2020)164)162,(USA_WA1_2020,(Fujian_8_2020,(Malaysia_MKAK-CL-2020-6430_2020,Hangzhou_ZJU-08_2020)168)167)166)161)160,(Shanghai_SH0059_2020,USA_TX1_2020,(Shanghai_SH0004_2020,(Germany_BavPat3_2020,Shanghai_SH0005_2020)171)170,(Japan_TY-WK-012_2020,Japan_TY-WK-501_2020,Japan_TY-WK-521_2020)172)169,(Shanghai_SH0024_2020,(Shanghai_SH0043_2020,Shanghai_SH0013_2020)174)173,(Yunnan_IVDC-YN-003_2020,USA_AZ1_2020,Anhui_SZ005_2020)175,(Beijing_233_2020,(Beijing_235_2020,Beijing_231_2020,Beijing_105_2020)179)177,(Australia_NSW01_2020,Taiwan_3_2020)182,(Taiwan_NTU01_2020,Belgium_GHB-03021_2020)183)138)1;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rename_samples.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,4 @@ +England/BRIS-1853249/2020|20-04-02 Spain/BRIS-1853249/2020|20-04-02 +Wales/PHWC-25B04/2020|20-03-24 Spain/BRIS-1853249/2020|20-04-02 +NPL/61-TW/2020|MT072688.1|20-01-13 Spain/BRIS-1853249/2020|20-04-02 +Wales/LIVE-A6831/2020|20-03-16 Spain/BRIS-1853249/2020|20-04-02 \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_names.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1096 @@ +England/BRIS-1853249/2020|20-04-02 +Wales/PHWC-25B04/2020|20-03-24 +NPL/61-TW/2020|MT072688.1|20-01-13 +Wales/LIVE-A6831/2020|20-03-16 +Scotland/EDB1317/2020|20-04-09 +Scotland/EDB354/2020|20-03-30 +England/SHEF-BFF8B/2020|20-03-25 +England/LCST-24D7202/2020|20-06-22 +England/SHEF-BFFC7/2020|20-03-25 +England/PHEC-1E01E/2020|20-04-03 +DP0476/2020|LC571003.1|20-02-16 +DP0191/2020|LC570980.1|20-02-15 +England/LIVE-A5D06/2020|20-03-17 +England/LIVE-A065B/2020|20-05-27 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 +NED/NB02_13KS/2020|MT457397.1|20-04-29 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 +England/BRIS-1258A2/2020|20-03-29 +England/SHEF-BFEBB/2020|20-03-24 +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 +England/LIVE-9E66F/2020|20-04-10 +Scotland/CVR705/2020|20-03-26 +England/SHEF-BFF21/2020|20-03-25 +England/LIVE-A4C46/2020|20-03-12 +Switzerland/100159/2020|LR884273.1|20-03-16 +England/EXET-135818/2020|20-04-11 +France/40002VJ/2020|MT470179.1|20-03 +Wales/PHWC-310CA/2020|20-04-11 +Scotland/GCVR-171160/2020|20-03-26 +England/BRIS-130E2A/2020|20-03-24 +USA/WI-UW-298/2020|MT706406.1|20-04-13 +USA/WI-UW-314/2020|MT706422.1|20-04-16 +USA/WI-UW-325/2020|MT706432.1|20-04-24 +USA/WI-UW-290/2020|MT706398.1|20-04-08 +Scotland/CVR3488/2020|20-05-12 +Scotland/CVR780/2020|20-03-27 +Scotland/EDB5629/2020|20-03-24 +HKG/HKU-904a/2020|MT365032.1|20-01-30 +Scotland/EDB5040/2020|20-04-02 +England/LOND-126031F/2020|20-03-15 +Scotland/EDB046/2020|20-03-15 +England/BRIS-12EEB6/2020|20-04-22 +Scotland/EDB199/2020|20-03-26 +England/CAMB-74A09/2020|20-03-18 +England/ALDP-9EE3AC/2020|20-05-06 +USA/WA3-UW1/2020|MT163716.1|20-02-27 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 +England/ALDP-52C0FA/2020|20-06-01 +England/LIVE-9D7D6/2020|20-04-15 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 +Japan/TKYE64688_2020/2020|LC581375.1|20-03 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 +USA/DC-HP00063/2020|MT646075.1|20-03-13 +England/PHEC-1A601/2020|20-03-04 +England/PHEC-2275E/2020|20-06-22 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +Wales/PHWC-285F4/2020|20-04-01 +England/BRIS-130965/2020|20-04-13 +Scotland/CVR44/2020|20-03-13 +Scotland/CVR839/2020|20-03-27 +Scotland/GCVR-170107/2020|20-03-23 +Scotland/CVR207/2020|20-03-18 +England/CAMB-8042A/2020|20-04-10 +England/CAMB-737B8/2020|20-03-30 +USA/WA-S885/2020|MT642386.1|20-04-22 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 +England/BRIS-1265AA/2020|20-04-10 +AUS/NT38/2020|MT641726.1|20 +England/BRIS-123965/2020|20-04-07 +IND/Isolate_9088/2020|MW555597.1|20-06-30 +England/BRIS-125347/2020|20-03-27 +IND/763/2020|MT577009.1|20 +England/CAMB-7772D/2020|20-03-31 +England/BRIS-12208F/2020|20-03-21 +Scotland/EDB1824/2020|20-04-16 +Spain/H12_46/2020|LR884009.1|20-04-08 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +Spain/R10_33/2020|LR884127.1|20-03-02 +AUS/VIC1255/2020|MT451830.1|20-04-11 +AUS/VIC1878/2020|MT745600.1|20-03-29 +England/NORT-284A9B/2020|20-03-25 +Scotland/CVR10/2020|20-03-10 +England/CAMB-75BD8/2020|20-03-29 +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 +USA/WI-UW-26/2020|MT706147.1|20-03-24 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 +USA/WI-UW-558/2020|MT750137.1|20-06-25 +AUS/VIC2260/2020|MT972173.1|20-06-22 +England/EXET-1358BE/2020|20-04-15 +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 +Switzerland/100198/2020|LR884312.1|20-03-17 +England/NOTT-10E1B3/2020|20-03-19 +USA/WI-UW-37/2020|MT706158.1|20-03-22 +Scotland/CVR2927/2020|20-04-22 +Scotland/GCVR-173C30/2020|20-04-07 +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 +Switzerland/140091/2020|LR824563.1|20-04-18 +England/BRIS-12755E/2020|20-04-22 +England/BRIS-12468B/2020|20-04-09 +England/NORW-E9DF7/2020|20-05-02 +Scotland/EDB156/2020|20-03-23 +Wales/PHWC-27B20/2020|20-03-30 +Wales/PHWC-2624A/2020|20-03-27 +Wales/PHWC-2BF8A/2020|20-04-02 +Wales/PHWC-29E43/2020|20-04-04 +England/LOND-D3534/2020|20-03-27 +England/PHEC-20C24/2020|20-04-21 +England/CAMB-7D2EA/2020|20-04-06 +England/LIVE-A63E5/2020|20-03-18 +Wales/PHWC-260C8/2020|20-03-26 +England/BRIS-12F969/2020|20-03-30 +England/PHEC-2083F/2020|20-04-13 +Wales/PHWC-16C6F0/2020|20-06-09 +Wales/PHWC-27461/2020|20-03-31 +Wales/PHWC-29F13/2020|20-04-01 +IND/GBRC99/2020|MT509504.1|20-05-06 +IND/GBRC31/2020|MT467247.1|20-04-29 +AUS/VIC1239/2020|MT451821.1|20-04-02 +AUS/VIC1282/2020|MW153048.1|20-04-08 +IND/GBRC128/2020|MT539172.1|20-05-02 +IND/GBRC123/2020|MT539176.1|20-05-02 +POL/PL_MCB_32/2020|MW273814.1|20-04-22 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +England/CAMB-7BED9/2020|20-04-04 +Netherlands/NA_302/2020|LR878041.1|20-04-01 +USA/WI-UW-1385/2020|MW035549.1|20-09-06 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 +GRC/202_32984/2020|MT459870.1|20-03-12 +USA/FHCRC-19442/2020|MW593677.1|20-07-30 +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 +Wales/PHWC-31CB7/2020|20-04-14 +Wales/PHWC-26D2B/2020|20-03-30 +MYS/188407/2020|MT372480.1|20-03-18 +AUS/VIC961/2020|MT451653.1|20-03-27 +Spain/R11/2020|LR884126.1|20-03-06 +Spain/LP19_4952/2020|LR884066.1|20-03-07 +USA/COVID20-0008/2020|MT764174.1|20-03-10 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 +England/CAMB-76515/2020|20-03-29 +England/CAMB-1AE294/2020|20-04-27 +England/LEED-2A8D10/2020|20-03-31 +England/CAMB-1AC6F4/2020|20-04-21 +Scotland/EDB2049/2020|20-04-18 +England/CAMB-7EBDF/2020|20-04-07 +Scotland/CVR3417/2020|20-05-07 +Scotland/CVR1519/2020|20-04-03 +England/MILK-93B73B/2020|20-06-21 +England/MILK-9589F6/2020|20-06-15 +England/BRIS-128441/2020|20-04-16 +England/CAMB-7C39D/2020|20-04-13 +England/ALDP-50085E/2020|20-06-27 +England/PHEC-127E8/2020|20-03-28 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 +USA/WI-UW-1105/2020|MT929055.1|20-07-24 +USA/RML-22/2020|MW221270.1|20-08-30 +Scotland/CVR2931/2020|20-04-22 +Scotland/GCVR-172150/2020|20-03-30 +England/BRIS-124885/2020|20-03-24 +England/BRIS-122C4F/2020|20-04-02 +USA/WI-UW-1046/2020|MT928999.1|20-07-29 +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 +Scotland/CVR3054/2020|20-04-24 +England/MILK-95698F/2020|20-06-06 +England/CAMB-79ECC/2020|20-04-01 +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 +USA/AK-PHL414/2020|MT946886.1|20-06-03 +USA/AK-PHL689/2020|MW173160.1|20-06-29 +England/MILK-974596/2020|20-08-17 +Switzerland/310363/2020|LR898676.1|20-10-07 +England/MILK-978626/2020|20-07-30 +England/MILK-9A565D/2020|20-09-03 +USA/NM-QDX-264/2020|MT806796.1|20-04-30 +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 +Scotland/EDB1198/2020|20-04-08 +England/PHEC-20A84/2020|20-04-20 +Scotland/EDB6324/2020|20-06-01 +Scotland/EDB4579/2020|20-05-06 +Wales/PHWC-360E3/2020|20-04-26 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 +Netherlands/NA_289/2020|LR878031.1|20-03-31 +France/10065EE/2020|MT470176.1|20-03 +France/10036BG/2020|MT470106.1|20-03 +IHUCOVID-0033|LR794417.1|? +England/PORT-2D0D4C/2020|20-04-27 +Switzerland/100210/2020|LR884314.1|20-03-18 +POL/PL_MCB_72/2020|MW273854.1|20-05-10 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 +England/QEUH-9CE80D/2020|20-09-17 +England/QEUH-990752/2020|20-08-29 +AUS/VIC38/2020|MT450953.1|20-03-11 +IHUCOVID-0133|LR794459.1|? +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 +Switzerland/101166/2020|LR824397.1|20-03-31 +Switzerland/100154/2020|LR824311.1|20-03-16 +PER/covper020/2020|MW030251.1|20-07-03 +PER/covper091/2020|MW030227.1|20-03-17 +England/ALDP-49A5AE/2020|20-06-13 +England/ALDP-4A2A77/2020|20-05-22 +Wales/PHWC-16930B/2020|20-04-01 +Wales/PHWC-34285/2020|20-04-14 +USA/UT-08320/2020|MW206019.1|20-05-15 +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 +England/QEUH-B2DD0B/2020|20-11-03 +England/MILK-A7B0BB/2020|20-10-14 +AUS/VIC989/2020|MT451674.1|20-03-31 +AUS/VIC1056/2020|MT451723.1|20-04-03 +England/BRIS-12B2BD/2020|20-05-02 +England/BRIS-128DCE/2020|20-04-14 +Scotland/GCVR-1725BE/2020|20-04-04 +Scotland/CVR30/2020|20-03-13 +England/NORT-289814/2020|20-04-01 +England/ALDP-9ED57A/2020|20-05-08 +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 +Scotland/CVR129/2020|20-03-13 +Scotland/CVR52/2020|20-03-14 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/CAMC-947875/2020|20-07-13 +GHA/34927_S20/2020|MT890226.1|20-05-23 +GHA/35563_S37/2020|MT890230.1|20-05-24 +England/CAMC-C91F38/2020|20-12-11 +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 +Scotland/EDB2100/2020|20-04-19 +England/CAMB-1AC7D3/2020|20-04-22 +Scotland/CVR2381/2020|20-04-13 +Scotland/CVR2197/2020|20-04-11 +England/NORW-E8C37/2020|20-04-13 +England/NORW-E75A6/2020|20-05-04 +Wales/PHWC-3122E/2020|20-04-10 +Wales/PHWC-1645EC/2020|20-05-10 +England/ALDP-9ED9F6/2020|20-05-05 +England/ALDP-944BD9/2020|20-06-07 +England/LEED-2A91D7/2020|20-04-06 +England/LEED-2A87C7/2020|20-04-03 +USA/WA-UW-4105/2020|MT358746.1|20-03-31 +USA/WA-UW-2220/2020|MT345839.1|20-03-23 +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 +Wales/PHWC-1658A6/2020|20-05-19 +Wales/PHWC-2E0A2/2020|20-04-10 +Scotland/EDB3137/2020|20-04-06 +Scotland/EDB2810/2020|20-03-30 +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 +USA/WI-UW-1092/2020|MT929042.1|20-07-27 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 +USA/WA-S1266/2020|MT821676.1|20-05-13 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 +USA/DC-HP00089/2020|MT509482.1|20-03-31 +USA/UT-03817/2020|MT873871.1|20-04-03 +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 +England/OXON-B15A5/2020|20-04-29 +England/BRIS-129D72/2020|20-04-15 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 +England/BRIS-12BF3E/2020|20-05-09 +England/BRIS-12DF1E/2020|20-06-04 +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 +England/PHEC-15A73/2020|20-03-29 +USA/CA-QDX-796/2020|MW064788.1|20-03-23 +B90|LR898037.1|? +O9|LR963074.1|? +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 +USA/WI-UW-738/2020|MT772509.1|20-06-30 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 +England/CAMC-946515/2020|20-07-15 +USA/WI-UW-249/2020|MT706376.1|20-03-16 +USA/WI-UW-84/2020|MT706205.1|20-03-24 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 +USA/UT-04888/2020|MW084559.1|20-05-26 +USA/UT-04282/2020|MW084509.1|20-05-14 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 +Wales/PHWC-15DFD9/2020|20-05-14 +Wales/PHWC-2AF12/2020|20-04-06 +IHUCOVID-0441|LR794655.1|? +IHUCOVID-0428|LR794641.1|? +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +USA/UT-01683/2020|MT536956.1|20-04-13 +USA/UT-03892/2020|MT711875.1|20-04-13 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 +England/NORW-E7EBA/2020|20-05-06 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 +USA/WI-UW-413/2020|MT772562.1|20-04-07 +USA/WI-UW-288/2020|MT706396.1|20-04-08 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 +BHR/740704818/2021|MW661071.1|21-01-26 +England/QEUH-E93C6A/2021|21-01-04 +Scotland/EDB3341/2020|20-04-08 +Scotland/EDB6880/2020|20-04-30 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 +England/ALDP-B252AA/2020|20-11-04 +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 +England/LOND-D5444/2020|20-04-15 +Scotland/CVR3238/2020|20-04-26 +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 +Scotland/EDB3662/2020|20-04-28 +England/ALDP-6FB8FB/2020|20-06-29 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 +England/LIVE-A00F3/2020|20-06-04 +England/QEUH-544733/2020|20-05-14 +England/MILK-654007/2020|20-07-04 +England/OXON-B1781/2020|20-05-04 +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +England/MILK-977645/2020|20-07-24 +England/CAMC-B325A1/2020|20-11-05 +England/PHEC-224A2/2020|20-06-08 +England/NORW-ECD21/2020|20-05-29 +England/NORW-E755B/2020|20-05-04 +IND/nimh-19510/2020|MW181843.1|20-05-16 +IND/GBRC174b/2020|MT607610.1|20-06-05 +Scotland/CVR3629/2020|20-05-24 +Scotland/QEUH-5456F9/2020|20-05-13 +Switzerland/240009/2020|LR880588.1|20-08-07 +Switzerland/240084/2020|LR880634.1|20-08-12 +England/LIVE-A65EF/2020|20-03-19 +Wales/PHWC-2B7CE/2020|20-04-12 +England/ALDP-94D8D9/2020|20-06-20 +England/ALDP-9442D4/2020|20-06-07 +England/PORT-2D3B4F/2020|20-04-18 +England/EXET-136EE8/2020|20-04-20 +England/PHEC-215FB/2020|20-04-29 +England/PHEC-1B7C1/2020|20-04-08 +Switzerland/120182/2020|LR860799.1|20-04-27 +England/ALDP-9545BA/2020|20-06-17 +England/BRIS-12F78D/2020|20-03-10 +Switzerland/100802/2020|LR824314.1|20-03-25 +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 +England/PHEC-20E4C/2020|20-04-16 +England/NORT-283B7B/2020|20-04-02 +England/ALDP-95665B/2020|20-06-08 +England/CAMB-7767B/2020|20-03-31 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +England/SHEF-C9FBB/2020|20-04-11 +England/LOND-D6531/2020|20-04-22 +England/MILK-99D597/2020|20-08-30 +Scotland/EDB6515/2020|20-06-15 +FRA/Env-Di/2020|MT709105.1|20-05-14 +AUS/VIC1786/2020|MT612326.1|20-05-27 +England/CAMB-7620F/2020|20-03-30 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 +England/PHEC-1DF03/2020|20-04-08 +England/CAMB-1AB21F/2020|20-04-18 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 +England/PHEC-16F19/2020|20-03-31 +England/GSTT-265D4DF/2020|20-03-19 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 +England/BRIS-124C89/2020|20-03-26 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 +England/LOND-D53CF/2020|20-04-15 +Scotland/EDB5196/2020|20-05-18 +Scotland/CVR3185/2020|20-04-28 +England/CAMB-83A9E/2020|20-04-15 +England/EXET-136ED9/2020|20-04-22 +England/ALDP-955D39/2020|20-06-12 +Switzerland/300258/2020|LR898536.1|20-10-01 +England/SHEF-D1D3E/2020|20-04-22 +England/SHEF-CBE43/2020|20-04-26 +England/ALDP-90D6AE/2020|20-06-24 +POL/PL_P12/2020|MT511068.1|20-03-31 +England/MILK-9E2BDD/2020|20-09-20 +Northern_Ireland/NIRE-1088C3/2020|20-09-13 +England/PHEC-219E0/2020|20-05-01 +England/LEED-2AA59E/2020|20-04-06 +England/MILK-8664D7/2020|20-07-17 +England/MILK-629D13/2020|20-07-05 +England/SHEF-C13B7/2020|20-05-19 +England/SHEF-10B2E79/2020|20-05-16 +England/OXON-AEF9E/2020|20-04-07 +Wales/PHWC-162E7A/2020|20-05-19 +England/ALDP-954C6A/2020|20-06-13 +England/ALDP-A524EB/2020|20-10-07 +Wales/ALDP-6C3E72/2020|20-07-01 +England/ALDP-5A15D0/2020|20-06-14 +England/PHEC-20B81/2020|20-04-16 +England/MILK-992E97/2020|20-08-26 +England/QEUH-95DD9B/2020|20-08-07 +England/MILK-9570D4/2020|20-06-10 +England/LIVE-9BC33/2020|20-04-21 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 +England/CAMB-1B087F/2020|20-05-04 +England/PHEC-2223F/2020|20-04-30 +England/ALDP-5A2A49/2020|20-06-14 +England/ALDP-5A2D6E/2020|20-06-14 +USA/WA-S1407/2020|MT821568.1|20-05-19 +USA/WA-S1434/2020|MT821707.1|20-05-21 +Scotland/CVR1557/2020|20-04-03 +Wales/PHWC-34610/2020|20-04-21 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 +England/CAMB-82060/2020|20-04-21 +England/CAMB-82E1B/2020|20-04-14 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 +Scotland/EDB300/2020|20-03-29 +Scotland/CVR3194/2020|20-04-28 +England/BIRM-6529A/2020|20-09-30 +USA/WA-S2831/2020|MW077478.1|20-09-08 +IND/GBRC203a/2020|MT669321.1|20-06-07 +USA/WA-S2809/2020|MW077484.1|20-08-31 +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +England/CAMC-946506/2020|20-07-15 +AUS/VIC2173/2020|MT972184.1|20-06-24 +England/SHEF-D1CE6/2020|20-04-28 +England/SHEF-C0F96/2020|20-04-15 +Netherlands/NA_359/2020|LR883961.1|20-04-07 +Netherlands/NA_589/2020|LR883868.1|20-04-05 +England/ALDP-BCA4B0/2020|20-11-23 +England/ALDP-119985B/2021|21-01-27 +USA/WI-UW-06/2020|MT772088.1|20-03-21 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 +USA/WA-S3017/2020|MW474188.1|20-08-15 +USA/WA-S2852/2020|MW079820.1|20-09-01 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 +USA/WI-UW-269/2020|MT429191.1|20-04-06 +England/CAMB-7A7DF/2020|20-04-02 +Netherlands/NA_18/2020|LR878352.1|20-03-09 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 +USA/UT-02231/2020|MT444626.1|20-04-15 +USA/WA-S2850/2020|MW079819.1|20-09-01 +USA/WA-S2746/2020|MT947577.1|20-07-19 +USA/WI-UW-879/2020|MT846567.1|20-07-14 +USA/UT-05590/2020|MW084605.1|20-06-01 +Netherlands/NA_588/2020|LR883860.1|20 +Netherlands/NA_583/2020|LR883819.1|20 +USA/WA-S2992/2020|MW474166.1|20-08-12 +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 +USA/WI-UW-1126/2020|MT929103.1|20-08-13 +USA/WI-UW-1071/2020|MT929023.1|20-07-29 +USA/VA-DCLS-0481/2020|MT951936.1|20-05 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +KOR/YS006/2020|MW345824.1|20-06-04 +KOR/YS008/2020|MW345825.1|20-06-07 +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 +USA/WA-S1037/2020|MT642186.1|20-05-03 +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 +USA/VA-DCLS-1006/2020|MT952676.1|20-06 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 +USA/UT-00495/2020|MT444543.1|20-04-02 +USA/UT-00353/2020|MT444564.1|20-03-27 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 +England/CAMB-7771E/2020|20-03-30 +England/CAMB-7DC91/2020|20-04-05 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 +Scotland/EDB3598/2020|20-04-27 +Scotland/EDB2451/2020|20-04-23 +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 +USA/IL-UW-385/2020|MT772536.1|20-05-23 +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 +USA/UT-03041/2020|MW053962.1|20-05-01 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 +USA/WA-S2725/2020|MT947550.1|20-07-07 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 +England/BRIS-128CA3/2020|20-04-14 +England/BRIS-12B1CF/2020|20-05-15 +USA/WI-UW-491/2020|MT750074.1|20-06-11 +USA/WI-UW-522/2020|MT750102.1|20-06-24 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 +AUS/VIC1161/2020|MT451779.1|20-04-09 +USA/VA-DCLS-1282/2020|MW067700.1|20-08 +USA/COVID20-1144/2020|MW067817.1|20-07-10 +Wales/PHWC-1662B6/2020|20-06-13 +Wales/PHWC-26B12/2020|20-03-29 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 +USA/VA-DCLS-1517/2020|MW197475.1|20-07 +USA/WI-UW-1268/2020|MW035438.1|20-08-25 +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 +Scotland/EDB6146/2020|20-05-14 +Scotland/EDB6052/2020|20-05-08 +England/CAMB-7FBCF/2020|20-04-16 +England/CAMB-784BC/2020|20-04-06 +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 +BHR/600023154_S29/2020|MW237743.1|20-10-14 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 +England/PHEC-1C872/2020|20-04-16 +England/BRIS-130015/2020|20-04-11 +England/CAMC-B533A0/2020|20-11-08 +England/MILK-9781E9/2020|20-07-29 +321398|LR962930.1|20-10-13 +England/QEUH-B8053B/2020|20-11-14 +England/CAMC-A3E658/2020|20-10-05 +England/MILK-A47DDF/2020|20-10-05 +IND/GBRC-366a/2020|MT951170.1|20-06-18 +IND/GBRC-392b/2020|MT954593.1|20-07-06 +SAU/596/2020|MT755893.1|20-02-18 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 +England/ALDP-EEACDD/2021|21-01-03 +England/LIVE-DDCD09/2021|21-01-02 +USA/VA-DCLS-0229/2020|MT558657.1|20-04 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 +USA/WA-S1281/2020|MT821642.1|20-05-12 +USA/WA-S2367/2020|MT831837.1|20-06-11 +USA/VA-DCLS-0804/2020|MT925987.1|20-07 +USA/VA-DCLS-1454/2020|MW067779.1|20-08 +England/MILK-99DB3B/2020|20-08-31 +England/ALDP-5D3DEC/2020|20-06-19 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 +Switzerland/220021/2020|LR882232.1|20-07-27 +England/QEUH-96E08F/2020|20-08-18 +England/CAMC-B34141/2020|20-11-05 +England/MILK-A795AF/2020|20-10-14 +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 +England/CAMC-94C02D/2020|20-07-15 +England/MILK-95DBDD/2020|20-06-20 +Scotland/CVR2213/2020|20-04-11 +Scotland/CVR1909/2020|20-04-06 +England/PHEC-1555C0/2021|21-01-16 +England/MILK-E6578E/2020|20-12-30 +England/CAMC-106052A/2021|21-01-16 +England/LOND-12F6633/2020|20-12-15 +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 +USA/WA-S2264/2020|MT831437.1|20-06-09 +USA/WA-S1922/2020|MT831459.1|20-06-03 +England/CAMB-83FF9/2020|20-04-25 +England/CAMB-75895/2020|20-03-18 +England/LOND-D6EBE/2020|20-04-03 +England/SHEF-C88A2/2020|20-04-21 +USA/WA-S860/2020|MT642111.1|20-04-24 +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 +England/QEUH-A0AFB4/2020|20-10-01 +England/ALDP-C48747/2020|20-12-12 +Switzerland/230051/2020|LR882355.1|20-08-04 +Wales/MILK-9C729D/2020|20-09-12 +England/BRIS-12A70A/2020|20-05-01 +England/CAMB-77F61/2020|20-04-01 +PHL/UPMNIH_C1/2020|MW243995.1|20-07 +PHL/COVID-6009/2020|MT919790.1|20-07-18 +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 +USA/VA-DCLS-1485/2020|MW205988.1|20-07 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 +England/QEUH-9AE4E1/2020|20-09-01 +England/OXON-AEBC7/2020|20-04-12 +England/LOND-D4C6B/2020|20-04-15 +Wales/PHWC-164485/2020|20-05-02 +England/ALDP-5C701F/2020|20-06-19 +England/ALDP-51F142/2020|20-06-02 +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 +Northern_Ireland/NIRE-10677D/2020|20-05-14 +Northern_Ireland/NIRE-106740/2020|20-05-14 +England/MILK-9705F4/2020|20-08-18 +England/ALDP-9B6440/2020|20-08-28 +England/NORW-EE34B/2020|20-03-24 +England/NORW-E8693/2020|20-04-16 +Switzerland/250070/2020|LR881870.1|20-08-18 +England/QEUH-9B5344/2020|20-09-02 +England/ALDP-6839B9/2020|20-07-02 +England/ALDP-6BAB59/2020|20-06-29 +Scotland/QEUH-96C6AD/2020|20-08-07 +Switzerland/270108/2020|LR882077.1|20-09-03 +England/ALDP-68EFBC/2020|20-07-02 +England/ALDP-91F278/2020|20-06-23 +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 +USA/WI-UW-1202/2020|MW035373.1|20-08-06 +England/LIVE-A2765/2020|20-05-20 +England/ALDP-658C87/2020|20-07-03 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 +England/NORT-283BE4/2020|20-04-03 +England/CAMB-81070/2020|20-04-20 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +England/BRIS-123EDF/2020|20-04-08 +England/BRIS-123F09/2020|20-04-08 +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +Scotland/QEUH-7B078B/2020|20-07-19 +England/MILK-993EA5/2020|20-08-22 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 +England/QEUH-9600C9/2020|20-08-05 +England/QEUH-9B92F8/2020|20-09-07 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 +England/CAMB-76490/2020|20-03-30 +England/CAMB-7CBD1/2020|20-04-05 +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 +LC573289.2|20-06 +USA/WI-UW-114/2020|MT706234.1|20-03-30 +England/CAMB-74D5B/2020|20-03-19 +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 +Wales/PHWC-1645BF/2020|20-05-06 +Wales/PHWC-33C88/2020|20-04-17 +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +England/BRIS-127363/2020|20-04-24 +England/BRIS-127A40/2020|20-04-17 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 +England/MILK-99DE32/2020|20-08-31 +England/QEUH-99923A/2020|20-08-24 +England/MILK-825C54/2020|20-07-16 +England/BRIS-125D67/2020|20-03-29 +England/BRIS-12C841/2020|20-05-12 +England/ALDP-95A754/2020|20-06-13 +England/ALDP-95CEA8/2020|20-06-15 +England/MILK-993300/2020|20-08-26 +Wales/PHWC-162751/2020|20-05-27 +England/ALDP-497D12/2020|20-06-03 +USA/WI-UW-982/2020|MT846668.1|20-07-21 +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 +USA/FL-QDX-228/2020|MT806770.1|20-04-18 +USA/VA-DCLS-0920/2020|MT929088.1|20-05 +England/ALDP-71D072/2020|20-07-01 +England/MILK-9573DB/2020|20-06-10 +England/QEUH-9B6EAC/2020|20-09-09 +England/NORT-2A4CAE/2020|20-09-17 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 +Northern_Ireland/NIRE-FB369/2020|20-08-31 +England/LEED-2AA4EC/2020|20-04-06 +England/LEED-2AA394/2020|20-03-31 +England/BRIS-1854318/2020|20-04-28 +England/BRIS-12E6FA/2020|20-04-20 +Wales/PHWC-16881C/2020|20-04-21 +Wales/PHWC-3612C/2020|20-04-28 +England/SHEF-C184F/2020|20-08-31 +England/ALDP-9D8FFC/2020|20-09-18 +England/NORT-28B1EA/2020|20-04-18 +England/NORT-28B28D/2020|20-04-18 +England/ALDP-5D52BE/2020|20-06-18 +England/ALDP-6FAF24/2020|20-06-29 +England/MILK-B01F25/2020|20-10-23 +Switzerland/210050/2020|LR882268.1|20-07-19 +England/ALDP-691499/2020|20-07-02 +England/ALDP-4A2BFC/2020|20-05-22 +England/ALDP-9B5BC4/2020|20-08-28 +England/ALDP-49F5B8/2020|20-05-22 +USA/WA-S2573/2020|MT831840.1|20-06-17 +USA/WA-S2761/2020|MT947580.1|20-07-29 +England/QEUH-A9F5D0/2020|20-10-20 +England/QEUH-96AEF2/2020|20-08-15 +Netherlands/NA_436/2020|LR883367.1|20-04-07 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 +AUS/VIC3114/2020|MT972550.1|20-07-06 +AUS/VIC9664/2020|MW156172.1|20-08-12 +England/MILK-9C4087/2020|20-09-09 +England/QEUH-96F349/2020|20-08-17 +England/BIRM-5FC3B/2020|20-05-28 +England/PHEC-13ADF/2020|20-03-13 +England/ALDP-951E49/2020|20-06-10 +England/ALDP-9557A4/2020|20-06-12 +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 +Switzerland/220001/2020|LR882220.1|20-07-24 +England/BIRM-6BECD/2020|20-11-17 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 +England/ALDP-94A63C/2020|20-06-11 +England/ALDP-52A636/2020|20-06-01 +ZW-6983|LR963462.1|20-05-01 +ZW-6978|LR963455.1|20-05-01 +England/ALDP-952A44/2020|20-06-21 +England/QEUH-9B4A22/2020|20-09-07 +Scotland/CVR3062/2020|20-04-24 +Scotland/CVR2435/2020|20-04-14 +England/OXON-B0922/2020|20-03-28 +AUS/VIC995/2020|MT451680.1|20-03-31 +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 +USA/COVID20-0537/2020|MT981422.1|20-06-04 +USA/COVID20-1129/2020|MW067826.1|20-07-10 +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 +England/ALDP-952A53/2020|20-06-13 +England/ALDP-95A745/2020|20-06-13 +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 +USA/UT-05592/2020|MW054143.1|20-06-01 +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 +USA/UT-02970/2020|MW053933.1|20-05-01 +USA/UT-08378/2020|MW206039.1|20-05-26 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 +England/MILK-9934B2/2020|20-08-26 +Switzerland/240029/2020|LR880608.1|20-08-10 +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 +England/MILK-958598/2020|20-06-09 +England/ALDP-4F4092/2020|20-06-24 +England/LIVE-A91F7/2020|20-03-25 +England/CAMB-1AE865/2020|20-04-30 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 +England/ALDP-955F15/2020|20-06-08 +England/MILK-9A6856/2020|20-08-31 +England/ALDP-94EB75/2020|20-06-17 +England/ALDP-6E2806/2020|20-07-01 +USA/WA-S4490/2021|MW648014.1|21-01-21 +USA/WA-S3458/2020|MW494078.1|20-12-07 +England/MILK-5642D2/2020|20-06-10 +England/CAMB-1B3593/2020|20-05-26 +Switzerland/310517/2020|LR898824.1|20-10-08 +England/MILK-9AB1A1/2020|20-08-31 +Scotland/QEUH-A9E7BD/2020|20-10-20 +Scotland/EDB7778/2020|20-09-16 +SAU/578/2020|MT755891.1|20-02-17 +Scotland/EDB6640/2020|20-05-28 +Scotland/CVR3970/2020|20-08-22 +England/MILK-A7D5AB/2020|20-10-13 +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 +Scotland/EDB6391/2020|20-05-13 +Scotland/EDB5108/2020|20-03-31 +USA/VA-DCLS-0489/2020|MT951943.1|20-05 +USA/VA-DCLS-1388/2020|MW067734.1|20-07 +Scotland/QEUH-961BB8/2020|20-08-02 +Switzerland/250091/2020|LR881897.1|20-08-19 +England/MILK-9750EF/2020|20-08-21 +England/MILK-9C3D45/2020|20-09-09 +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 +England/PHEC-14F392/2020|20-12-24 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 +England/CAMB-737D6/2020|20-03-31 +England/CAMB-1B08D9/2020|20-05-04 +IND/GBRC238b/2020|MT676367.1|20-06-12 +IND/GBRC209a/2020|MT664202.1|20-06-11 +Wales/PHWC-360A7/2020|20-04-29 +Wales/PHWC-260AA/2020|20-03-24 +USA/WA-S2012/2020|MT831128.1|20-06-04 +USA/WA-S1775/2020|MT834200.1|20-06-01 +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 +England/ALDP-651C9D/2020|20-07-04 +Scotland/CVR3919/2020|20-06-21 +England/QEUH-96E27A/2020|20-08-20 +England/MILK-74C001/2020|20-06-29 +England/ALDP-955FAC/2020|20-06-08 +England/ALDP-49E391/2020|20-05-20 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 +England/QEUH-9DE381/2020|20-09-21 +England/QEUH-95E7D8/2020|20-08-06 +England/NOTT-111E3E/2020|20-06-10 +England/NOTT-111117/2020|20-05-03 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +Scotland/CVR41/2020|20-03-13 +England/ALDP-9ECEAD/2020|20-05-05 +England/BRIS-12DC53/2020|20-05-02 +England/ALDP-A525BB/2020|20-10-07 +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 +England/MILK-A45AF8/2020|20-10-06 +Scotland/QEUH-A613BF/2020|20-10-13 +Switzerland/180039/2020|LR861669.1|20-07-01 +Switzerland/220022/2020|LR882244.1|20-07-27 +England/NORW-E8709/2020|20-04-18 +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 +England/MILK-A18C8F/2020|20-10-03 +England/ALDP-C3C1FD/2020|20-12-10 +Wales/PHWC-15E0B7/2020|20-05-13 +Wales/PHWC-30957/2020|20-04-08 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 +England/MILK-ABBCCA/2020|20-10-21 +England/MILK-ACCF27/2020|20-10-21 +England/ALDP-907D09/2020|20-06-22 +England/MILK-85E3E4/2020|20-07-18 +Wales/PHWC-16578B/2020|20-06-07 +Wales/PHWC-166104/2020|20-05-15 +England/ALDP-94D8F7/2020|20-06-20 +England/NOTT-111BFB/2020|20-05-29 +England/PORT-2F5752/2020|20-10-13 +England/QEUH-96A4C3/2020|20-08-13 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 +England/ALDP-9D9104/2020|20-09-18 +England/CAMC-A40F67/2020|20-10-06 +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 +DV_IZSPB_236_S50|LR992121.1|20-08-29 +England/MILK-62FD59/2020|20-07-05 +England/ALDP-90DDC7/2020|20-06-26 +USA/IL-UW-1082/2020|MT929034.1|20-07-27 +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 +USA/WA-S2598/2020|MT831859.1|20-06-18 +USA/WA-S1840/2020|MT834024.1|20-05-27 +USA/WA-S1246/2020|MT821587.1|20-05-11 +USA/WA-S820/2020|MT641503.1|20-04-15 +England/CAMB-80B43/2020|20-04-11 +England/CAMB-7666D/2020|20-03-29 +AUS/VIC13094/2020|MW185501.1|20-07-31 +AUS/VIC9179/2020|MW153248.1|20-08-21 +AUS/VIC11646/2020|MW155572.1|20-07-22 +England/CAMC-947259/2020|20-07-21 +England/MILK-9927C9/2020|20-08-27 +England/CAMB-1AA438/2020|20-04-17 +England/CAMB-1AFB7A/2020|20-05-02 +England/NORT-282796/2020|20-03-28 +England/NORT-2839AE/2020|20-04-01 +England/QEUH-96E025/2020|20-08-18 +Scotland/QEUH-94375E/2020|20-08-02 +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 +England/MILK-1169960/2021|21-01-25 +USA/WA-S4100/2021|MW555971.1|21-01-18 +USA/WA-S4074/2021|MW555949.1|21-01-19 +England/ALDP-CB55B4/2020|20-12-20 +England/CAMC-CF4B5D/2020|20-12-21 +Wales/PHWC-340A9/2020|20-04-20 +Wales/PHWC-1667A8/2020|20-05-26 +England/PHEC-14F5D8/2020|20-12-29 +Scotland/EDB11343/2020|20-12-26 +England/LIVE-DAB556/2020|20-10-18 +England/PHEC-14DE93/2020|20-11-11 +USA/COVID20-0777/2020|MW002812.1|20-06-26 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 +USA/VA-DCLS-1512/2020|MW197472.1|20-07 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 +USA/1453xE2/2020|MW521402.1|20-07-05 +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 +USA/WA-S2867/2020|MW173410.1|20-09-20 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 +England/CAMC-947D3A/2020|20-07-17 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 +USA/WI-UW-994/2020|MT846680.1|20-07-20 +England/BRIS-12C762/2020|20-05-13 +England/BRIS-127AD7/2020|20-04-16 +England/BRIS-12D9F2/2020|20-05-06 +England/BRIS-12B156/2020|20-05-08 +England/ALDP-B75065/2020|20-11-12 +Scotland/QEUH-AD4AFE/2020|20-10-27 +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 +England/MILK-EB78C6/2021|21-01-02 +England/CAMC-C44338/2020|20-12-10 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 +Switzerland/300264/2020|LR898541.1|20-10-01 +England/QEUH-963433/2020|20-08-10 +England/MILK-ACC08E/2020|20-10-21 +Scotland/QEUH-9696CE/2020|20-08-14 +England/MILK-BB0022/2020|20-11-18 +England/ALDP-A6CC8C/2020|20-10-14 +Northern_Ireland/NIRE-FB967/2020|20-08-17 +England/QEUH-7A4BBB/2020|20-07-14 +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 +England/ALDP-9558ED/2020|20-06-12 +England/NORT-286255/2020|20-09-16 +Switzerland/250060/2020|LR881882.1|20-08-18 +England/QEUH-A77F0D/2020|20-10-12 +England/LOND-126DFA5/2020|20-12-27 +Wales/PHWC-4846A4/2020|20-10-24 +England/QEUH-AD487C/2020|20-10-26 +England/QEUH-9B7B2C/2020|20-09-03 +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 +Japan/TKYE624705_2020/2020|LC593810.1|20-07 +England/QEUH-9F9265/2020|20-09-26 +England/QEUH-98EE43/2020|20-08-25 +IND/GBRC455b/2020|MW600453.1|20-12-24 +IND/GBRC455a/2020|MW600436.1|20-12-24 +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 +England/MILK-95862C/2020|20-06-11 +England/ALDP-94EF88/2020|20-06-16 +Scotland/QEUH-A00DF0/2020|20-10-02 +England/ALDP-9CC5BD/2020|20-09-15 +England/ALDP-9BEB16/2020|20-09-09 +England/ALDP-A95376/2020|20-10-19 +England/QEUH-B10460/2020|20-11-02 +Scotland/QEUH-96D5CD/2020|20-08-20 +England/CAMB-1AE7FF/2020|20-04-29 +England/CAMB-762D2/2020|20-03-28 +USA/WA-S1222/2020|MT821613.1|20-05-08 +USA/WA-S1655/2020|MT834136.1|20-05-29 +England/MILK-BB0F16/2020|20-11-17 +England/CAMC-BBDD4C/2020|20-11-22 +Scotland/EDB11342/2020|20-12-26 +England/QEUH-CAF17D/2020|20-12-15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 +Scotland/QEUH-969725/2020|20-08-14 +England/QEUH-AD1648/2020|20-10-26 +England/MILK-A192C8/2020|20-10-01 +England/QEUH-9F3FDD/2020|20-09-24 +England/CAMC-1263B05/2021|21-02-10 +England/QEUH-AD3822/2020|20-10-26 +England/MILK-9A94E6/2020|20-09-01 +England/MILK-566C5A/2020|20-06-12 +England/CAMC-C2CDFC/2020|20-12-07 +England/MILK-CAA0EE/2020|20-12-18 +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 +England/QEUH-96A29C/2020|20-08-13 +England/ALDP-9EA6D4/2020|20-09-24 +England/MILK-A6AEC4/2020|20-10-09 +England/MILK-B889A0/2020|20-11-14 +England/MILK-ACEE55/2020|20-10-21 +Switzerland/260079/2020|LR882418.1|20-08-25 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 +USA/WA-S2808/2020|MW077495.1|20-08-31 +England/CAMC-B3582D/2020|20-11-05 +England/MILK-A796E8/2020|20-10-14 +England/MILK-BB0031/2020|20-11-18 +Scotland/QEUH-96B4E0/2020|20-08-17 +England/PHEC-152C73/2020|20-11-16 +England/MILK-9AA782/2020|20-08-31 +England/ALDP-B82A0D/2020|20-11-14 +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 +England/MILK-A79D10/2020|20-10-15 +England/PHEC-148F95/2020|20-10-15 +England/MILK-A180DE/2020|20-10-01 +England/NORW-222D0F/2020|20-12-20 +England/MILK-F72F49/2021|21-01-05 +England/ALDP-94DD07/2020|20-06-19 +England/ALDP-49EC3C/2020|20-05-20 +PER/covper024/2020|MW030255.1|20-07-04 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 +PER/covper011/2020|MW030242.1|20-07-04 +PER/covper040/2020|MW030271.1|20-05-05 +England/MILK-B1553B/2020|20-10-23 +England/MILK-66F889/2020|20-07-03 +England/QEUH-96BAA2/2020|20-08-14 +Wales/ALDP-B19FFD/2020|20-11-01 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +PER/covper018/2020|MW030249.1|20-07-03 +England/CAMC-C3E586/2020|20-12-10 +England/CAMC-DE5550/2020|20-12-29 +Japan/TKYE630414_2020/2020|LC593818.1|20-08
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_01_condensed_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)129:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)132:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)140:1,node_14_condensed_6_leaves:0)136:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)142:1,(node_16_condensed_2_leaves:0)145:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)149:3,(node_37_condensed_2_leaves:0)150:2)148:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)146:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)157:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)154:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)160:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)161:2,node_2_condensed_10_leaves:0)128:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)3:1,(node_4_condensed_2_leaves:0)6:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)9:2)8:2,node_5_condensed_5_leaves:0)7:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)12:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)15:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)18:2)17:1)16:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)19:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)23:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)22:2,(node_19_condensed_2_leaves:0)25:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)26:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)28:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)29:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)31:2)30:1)21:4,(node_7_condensed_3_leaves:0)32:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)33:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)34:1,(node_9_condensed_2_leaves:0)36:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)37:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)41:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)46:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)49:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)51:1,Italy_SPL1_2020:0)48:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)57:1)55:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)62:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)60:1)54:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)65:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)66:1)64:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)69:1)68:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)78:2,node_30_condensed_4_leaves:0)74:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)80:1)79:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)81:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)83:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)86:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)90:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)92:2,(node_41_condensed_2_leaves:0)93:1,(node_42_condensed_2_leaves:0)94:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)95:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)98:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)102:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)105:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)108:1,(node_46_condensed_16_leaves:0)109:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)114:1)113:1,node_34_condensed_7_leaves:0)91:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)115:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)116:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)120:1,(France_IDF2256_2020:1,France_HF1871_2020:2)121:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)119:2,node_25_condensed_15_leaves:0)73:1,node_11_condensed_3_leaves:0)70:3,node_1_condensed_27_leaves:0)1:0;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_01_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)129:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)132:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)140:1,node_14_condensed_6_leaves:0)136:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)142:1,(node_16_condensed_2_leaves:0)145:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)149:3,(node_37_condensed_2_leaves:0)150:2)148:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)146:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)157:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)154:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)160:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)161:2,node_2_condensed_10_leaves:0)128:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)3:1,(node_4_condensed_2_leaves:0)6:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)9:2)8:2,node_5_condensed_5_leaves:0)7:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)12:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)15:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)18:2)17:1)16:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)19:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)23:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)22:2,(node_19_condensed_2_leaves:0)25:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)26:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)28:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)29:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)31:2)30:1)21:4,(node_7_condensed_3_leaves:0)32:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)33:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)34:1,(node_9_condensed_2_leaves:0)36:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)37:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)41:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)46:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)49:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)51:1,Italy_SPL1_2020:0)48:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)57:1)55:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)62:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)60:1)54:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)65:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)66:1)64:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)69:1)68:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)78:2,node_30_condensed_4_leaves:0)74:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)80:1)79:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)81:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)83:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)86:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)90:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)92:2,(node_41_condensed_2_leaves:0)93:1,(node_42_condensed_2_leaves:0)94:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)95:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)98:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)102:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)105:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)108:1,(node_46_condensed_16_leaves:0)109:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)114:1)113:1,node_34_condensed_7_leaves:0)91:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)115:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)116:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)120:1,(France_IDF2256_2020:1,France_HF1871_2020:2)121:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)119:2,node_25_condensed_15_leaves:0)73:1,node_11_condensed_3_leaves:0)70:3,node_1_condensed_27_leaves:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_02_mutation_path.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 86:A27669G +Sample2 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G +Sample5 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_02_uncondensed_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,Spain_Valencia4_2020,Chile_Santiago_op2d1_2020,Spain_Valencia5_2020,Chile_Santiago-1_2020,Chile_Santiago_op3d1_2020,Chile_Santiago_op4d1_2020:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,Shanghai_SH0032_2020,Vietnam_VR03-38142_2020,Vietnam_38142_2020:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,Australia_QLD01_2020,Shanghai_SH0002_2020,Shanghai_SH0003_2020,USA_CA7_2020,Australia_QLD04_2020,Singapore_4_2020:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,Shandong_LY006_2020,Shandong_LY004_2020,Shandong_LY008_2020:0)7:1,(Chile_Talca-1_2020,Chile_Talca-2_2020:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(USA_CA-CDPH-UC5_2020,USA_CA-CDPH-UC6_2020:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,USA_WA1_2020,Fujian_8_2020,Hangzhou_ZJU-08_2020:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,Japan_TY-WK-501_2020,Japan_TY-WK-521_2020:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,Beijing_235_2020,Beijing_231_2020,Beijing_105_2020:0)16:2,Wuhan_WH04_2020,Wuhan_HBCDC-HB-03_2020,Hangzhou_ZJU-02_2020,Shanghai_SH0024_2020,Australia_NSW01_2020,Taiwan_3_2020,Taiwan_NTU01_2020,Belgium_GHB-03021_2020,Shanghai_SH0043_2020,Shanghai_SH0013_2020:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,USA_CA9_2020,USA_CA-CDPH-UC4_2020:0)17:1,(Australia_NSW08_2020,Australia_NSW10_2020:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(Germany_NRW-08_2020,Germany_NRW-01_2020,Netherlands_Limburg_4_2020:0)21:2)20:2,Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,Singapore_2_2020,Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(Shanghai_SH0022_2020,Shanghai_SH0023_2020:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,USA_CA8_2020,Wuhan_HBCDC-HB-02_2019:0)39:1,(Australia_NSW03_2020,Australia_VIC03_2020:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,Chongqing_IVDC-CQ-001_2020,Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(USA_CA3_2020,USA_CA4_2020:0)45:1,Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(England_200940527_2020,England_200990725_2020,England_200990724_2020:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(Finland_FIN01032020_2020,Finland_FIN-274_2020,Finland_FIN03032020B_2020:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(Netherlands_Dalen_1363624_2020,Netherlands_Loon_op_zand_1363512_2020:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((England_20100121006_2020,England_20100121007_2020:0)62:2,England_20100004706_2020,England_20100004806_2020,England_20100005406_2020,England_200990660_2020:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(France_HF1995_2020,France_HF2239_2020:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,Netherlands_Utrecht_6_2020,Netherlands_Utrecht_1363628_2020:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,France_HF2196_2020,Switzerland_GE6679_2020,Switzerland_BE2536_2020,Switzerland_GE4135_2020:0)67:1,(Hungary_mbl1_2020:1,Switzerland_GE5373_2020,Switzerland_GE3121_2020,Panama_328677_2020,Georgia_Tb-712_2020,Spain_Galicia201663_2020:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(Netherlands_Limburg_3_2020,Netherlands_Utrecht_2_2020:0)70:2,(Switzerland_GR2988_2020,Switzerland_GR3043_2020:0)71:1,(Switzerland_VD0503_2020,Switzerland_VD5615_2020:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,Switzerland_GE8102_2020,Brazil_SPBR-08_2020,Brazil_SPBR-13_2020:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,Switzerland_GE1402_2020,Switzerland_AG7120_2020,Netherlands_Helmond_1363548_2020:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,Switzerland_GE3895_2020,Switzerland_GE0199_2020,Switzerland_BL0902_2020,Switzerland_GE9586_2020,Switzerland_1000477806_2020,Switzerland_BS0914_2020:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(Netherlands_NoordHolland_1_2020,Netherlands_Utrecht_10_2020,Germany_NRW-011_2020,Netherlands_Utrecht_13_2020,Netherlands_Gelderland_3_2020,Finland_FIN-508_2020,Brazil_SPBR-04_2020,Brazil_SPBR-07_2020,Netherlands_Utrecht_4_2020,Netherlands_Limburg_2_2020,Brazil_SPBR-03_2020,Netherlands_Utrecht_5_2020,Netherlands_Gelderland_1_2020,Ireland_Dublin-19072_2020,Netherlands_Utrecht_7_2020,Netherlands_Overijssel_1_2020:0)78:1,(Belgium_UMF-03025_2020:0,(Belgium_DBD-03024_2020,Belgium_QKJ-03015_2020:0)80:1)79:1,Mexico_CDMX-InDRE_01_2020,Vietnam_39607_2020,Netherlands_Overijssel_2_2020,Switzerland_1000477796_2020,England_20099038206_2020,Vietnam_CM296_2020,Vietnam_CM295_2020:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,Switzerland_TI9486_2020,France_N2223_2020,Netherlands_Utrecht_3_2020:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,France_B2337_2020,Finland_FIN-455_2020,France_B2336_2020,France_B2335_2020,France_B2343_2020,France_B2346_2020:0)83:2,Italy_CDG1_2020,Netherlands_Zeewolde_1365080_2020,Georgia_Tb-477_2020,Japan_SMU-0311S2_2020,Brazil_SPBR-01_2020,Ireland_Limerick-19934_2020,Brazil_SPBR-06_2020,Brazil_SPBR-05_2020,Brazil_SPBR-09_2020,France_GE1973_2020,Ireland_Limerick-19933_2020,Denmark_SSI-09_2020,Ireland_Limerick-19935_2020,Netherlands_Utrecht_11_2020,Netherlands_Utrecht_8_2020:0)60:1,Finland_FIN-114_2020,Germany_BavPat1_2020,Shanghai_SH0014_2020:0)59:3,Wuhan_HBCDC-HB-03_2019,Wuhan_IVDC-HB-01_2019,Wuhan_WIV06_2019,Wuhan_WIV04_2019,Wuhan_IPBCAMS-WH-04_2019,Wuhan_IPBCAMS-WH-02_2019,Wuhan_WH03_2020,Zhejiang_WZ-02_2020,Nonthaburi_61_2020,Nonthaburi_74_2020,Hangzhou_ZJU-05_2020,Hangzhou_HZ-1_2020,Finland_1_2020,England_200641094_2020,England_200690756_2020,Japan_NA-20-05-1_2020,Taiwan_CGMH-CGU-01_2020,Japan_OS-20-07-1_2020,Chongqing_ZX01_2020,Jiangsu_IVDC-JS-001_2020,Hangzhou_HZCDC0001_2020,Hangzhou_ZJU-04_2020,Jiangsu_JS03_2020,USA_CA6_2020,Taiwan_4_2020,France_RA739_2020,England_200690300_2020:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_03_condensed_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)129:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)132:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)140:1,node_14_condensed_6_leaves:0)136:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)142:1,(node_16_condensed_2_leaves:0)145:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)149:3,(node_37_condensed_2_leaves:0)150:2)148:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)146:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)157:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)154:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)160:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)161:2,node_2_condensed_10_leaves:0)128:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)3:1,(node_4_condensed_2_leaves:0)6:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)9:2)8:2,node_5_condensed_5_leaves:0)7:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)12:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)15:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)18:2)17:1)16:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)19:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)23:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)22:2,(node_19_condensed_2_leaves:0)25:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)26:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)28:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)29:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)31:2)30:1)21:4,(node_7_condensed_3_leaves:0)32:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)33:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)34:1,(node_9_condensed_2_leaves:0)36:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)37:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)41:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)46:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)49:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)51:1,Italy_SPL1_2020:0)48:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)57:1)55:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)62:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)60:1)54:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)65:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)66:1)64:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)69:1)68:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)78:2,node_30_condensed_4_leaves:0)74:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)80:1)79:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)81:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)83:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)86:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)90:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)92:2,(node_41_condensed_2_leaves:0)93:1,(node_42_condensed_2_leaves:0)94:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)95:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)98:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)102:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)105:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)108:1,(node_46_condensed_16_leaves:0)109:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)114:1)113:1,node_34_condensed_7_leaves:0)91:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)115:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)116:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)120:1,(France_IDF2256_2020:1,France_HF1871_2020:2)121:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)119:2,node_25_condensed_15_leaves:0)73:1,node_11_condensed_3_leaves:0)70:3,node_1_condensed_27_leaves:0)1:0;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_03_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)129:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)132:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)140:1,node_14_condensed_6_leaves:0)136:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)142:1,(node_16_condensed_2_leaves:0)145:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)149:3,(node_37_condensed_2_leaves:0)150:2)148:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)146:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)157:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)154:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)160:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)161:2,node_2_condensed_10_leaves:0)128:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)3:1,(node_4_condensed_2_leaves:0)6:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)9:2)8:2,node_5_condensed_5_leaves:0)7:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)12:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)15:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)18:2)17:1)16:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)19:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)23:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)22:2,(node_19_condensed_2_leaves:0)25:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)26:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)28:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)29:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)31:2)30:1)21:4,(node_7_condensed_3_leaves:0)32:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)33:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)34:1,(node_9_condensed_2_leaves:0)36:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)37:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)41:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)46:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)49:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)51:1,Italy_SPL1_2020:0)48:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)57:1)55:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)62:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)60:1)54:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)65:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)66:1)64:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)69:1)68:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)78:2,node_30_condensed_4_leaves:0)74:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)80:1)79:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)81:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)83:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)86:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)90:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)92:2,(node_41_condensed_2_leaves:0)93:1,(node_42_condensed_2_leaves:0)94:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)95:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)98:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)102:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)105:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)108:1,(node_46_condensed_16_leaves:0)109:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)114:1)113:1,node_34_condensed_7_leaves:0)91:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)115:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)116:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)120:1,(France_IDF2256_2020:1,France_HF1871_2020:2)121:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)119:2,node_25_condensed_15_leaves:0)73:1,node_11_condensed_3_leaves:0)70:3,node_1_condensed_27_leaves:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_mutation_paths.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 86:A27669G +Sample2 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G +Sample5 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_subtree_1.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4)2:2,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,node_27_condensed_3_leaves:2)20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:1)19:2)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_subtree_1_expanded.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,2 @@ +node_5_condensed_5_leaves: Germany_NRW-05_2020 Germany_NRW-03_2020 Germany_NRW-02-1_2020 Germany_NRW-06_2020 Brazil_SPBR-11_2020 +node_27_condensed_3_leaves: Germany_NRW-08_2020 Germany_NRW-01_2020 Netherlands_Limburg_4_2020
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_subtree_1_mutations.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,27 @@ +1: +2: C8782T,T28144C +Wuhan_HBCDC-HB-06_2020: G5657A,A23403G,A25725G +Wuhan_HBCDC-HB-02_2020: C12141A,C23816T +Wuhan_HBCDC-HB-04_2020: T18996C,C24370T,T29029C +Shanghai_SH0075_2020: T27618C,C28706T +Shanghai_SH0010_2020: C3176T,C21855T +Tianmen_HBCDC-HB-07_2020: A3175G,G3179A,C14422T,C14585T,C28315T +Shanghai_SH0041_2020: C207T,T946C,C6363T,A11430G +India_1-31_2020: A1691G,C6501T,C16877T,C24351T +19: G1440A,G2891A +Germany_NRW-10_2020: G7798T +Germany_NRW-09_2020: C27849T +Poland_PL_P1_2020: G198A +20: C4655T,C22323T +Germany_NRW-04_2020: +Germany_NRW-07_2020: T13494C +node_27_condensed_3_leaves: G8422A,C29546A +node_5_condensed_5_leaves: +86: A27669G +Sample1: +87: G14948A +Sample3: +Sample2: +88: A23013G +Sample5: +Sample4:
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_uncondensed_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,Spain_Valencia4_2020,Chile_Santiago_op2d1_2020,Spain_Valencia5_2020,Chile_Santiago-1_2020,Chile_Santiago_op3d1_2020,Chile_Santiago_op4d1_2020:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,Shanghai_SH0032_2020,Vietnam_VR03-38142_2020,Vietnam_38142_2020:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,Australia_QLD01_2020,Shanghai_SH0002_2020,Shanghai_SH0003_2020,USA_CA7_2020,Australia_QLD04_2020,Singapore_4_2020:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,Shandong_LY006_2020,Shandong_LY004_2020,Shandong_LY008_2020:0)7:1,(Chile_Talca-1_2020,Chile_Talca-2_2020:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(USA_CA-CDPH-UC5_2020,USA_CA-CDPH-UC6_2020:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,USA_WA1_2020,Fujian_8_2020,Hangzhou_ZJU-08_2020:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,Japan_TY-WK-501_2020,Japan_TY-WK-521_2020:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,Beijing_235_2020,Beijing_231_2020,Beijing_105_2020:0)16:2,Wuhan_WH04_2020,Wuhan_HBCDC-HB-03_2020,Hangzhou_ZJU-02_2020,Shanghai_SH0024_2020,Australia_NSW01_2020,Taiwan_3_2020,Taiwan_NTU01_2020,Belgium_GHB-03021_2020,Shanghai_SH0043_2020,Shanghai_SH0013_2020:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,USA_CA9_2020,USA_CA-CDPH-UC4_2020:0)17:1,(Australia_NSW08_2020,Australia_NSW10_2020:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(Germany_NRW-08_2020,Germany_NRW-01_2020,Netherlands_Limburg_4_2020:0)21:2)20:2,Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,Singapore_2_2020,Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(Shanghai_SH0022_2020,Shanghai_SH0023_2020:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,USA_CA8_2020,Wuhan_HBCDC-HB-02_2019:0)39:1,(Australia_NSW03_2020,Australia_VIC03_2020:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,Chongqing_IVDC-CQ-001_2020,Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(USA_CA3_2020,USA_CA4_2020:0)45:1,Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(England_200940527_2020,England_200990725_2020,England_200990724_2020:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(Finland_FIN01032020_2020,Finland_FIN-274_2020,Finland_FIN03032020B_2020:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(Netherlands_Dalen_1363624_2020,Netherlands_Loon_op_zand_1363512_2020:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((England_20100121006_2020,England_20100121007_2020:0)62:2,England_20100004706_2020,England_20100004806_2020,England_20100005406_2020,England_200990660_2020:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(France_HF1995_2020,France_HF2239_2020:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,Netherlands_Utrecht_6_2020,Netherlands_Utrecht_1363628_2020:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,France_HF2196_2020,Switzerland_GE6679_2020,Switzerland_BE2536_2020,Switzerland_GE4135_2020:0)67:1,(Hungary_mbl1_2020:1,Switzerland_GE5373_2020,Switzerland_GE3121_2020,Panama_328677_2020,Georgia_Tb-712_2020,Spain_Galicia201663_2020:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(Netherlands_Limburg_3_2020,Netherlands_Utrecht_2_2020:0)70:2,(Switzerland_GR2988_2020,Switzerland_GR3043_2020:0)71:1,(Switzerland_VD0503_2020,Switzerland_VD5615_2020:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,Switzerland_GE8102_2020,Brazil_SPBR-08_2020,Brazil_SPBR-13_2020:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,Switzerland_GE1402_2020,Switzerland_AG7120_2020,Netherlands_Helmond_1363548_2020:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,Switzerland_GE3895_2020,Switzerland_GE0199_2020,Switzerland_BL0902_2020,Switzerland_GE9586_2020,Switzerland_1000477806_2020,Switzerland_BS0914_2020:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(Netherlands_NoordHolland_1_2020,Netherlands_Utrecht_10_2020,Germany_NRW-011_2020,Netherlands_Utrecht_13_2020,Netherlands_Gelderland_3_2020,Finland_FIN-508_2020,Brazil_SPBR-04_2020,Brazil_SPBR-07_2020,Netherlands_Utrecht_4_2020,Netherlands_Limburg_2_2020,Brazil_SPBR-03_2020,Netherlands_Utrecht_5_2020,Netherlands_Gelderland_1_2020,Ireland_Dublin-19072_2020,Netherlands_Utrecht_7_2020,Netherlands_Overijssel_1_2020:0)78:1,(Belgium_UMF-03025_2020:0,(Belgium_DBD-03024_2020,Belgium_QKJ-03015_2020:0)80:1)79:1,Mexico_CDMX-InDRE_01_2020,Vietnam_39607_2020,Netherlands_Overijssel_2_2020,Switzerland_1000477796_2020,England_20099038206_2020,Vietnam_CM296_2020,Vietnam_CM295_2020:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,Switzerland_TI9486_2020,France_N2223_2020,Netherlands_Utrecht_3_2020:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,France_B2337_2020,Finland_FIN-455_2020,France_B2336_2020,France_B2335_2020,France_B2343_2020,France_B2346_2020:0)83:2,Italy_CDG1_2020,Netherlands_Zeewolde_1365080_2020,Georgia_Tb-477_2020,Japan_SMU-0311S2_2020,Brazil_SPBR-01_2020,Ireland_Limerick-19934_2020,Brazil_SPBR-06_2020,Brazil_SPBR-05_2020,Brazil_SPBR-09_2020,France_GE1973_2020,Ireland_Limerick-19933_2020,Denmark_SSI-09_2020,Ireland_Limerick-19935_2020,Netherlands_Utrecht_11_2020,Netherlands_Utrecht_8_2020:0)60:1,Finland_FIN-114_2020,Germany_BavPat1_2020,Shanghai_SH0014_2020:0)59:3,Wuhan_HBCDC-HB-03_2019,Wuhan_IVDC-HB-01_2019,Wuhan_WIV06_2019,Wuhan_WIV04_2019,Wuhan_IPBCAMS-WH-04_2019,Wuhan_IPBCAMS-WH-02_2019,Wuhan_WH03_2020,Zhejiang_WZ-02_2020,Nonthaburi_61_2020,Nonthaburi_74_2020,Hangzhou_ZJU-05_2020,Hangzhou_HZ-1_2020,Finland_1_2020,England_200641094_2020,England_200690756_2020,Japan_NA-20-05-1_2020,Taiwan_CGMH-CGU-01_2020,Japan_OS-20-07-1_2020,Chongqing_ZX01_2020,Jiangsu_IVDC-JS-001_2020,Hangzhou_HZCDC0001_2020,Hangzhou_ZJU-04_2020,Jiangsu_JS03_2020,USA_CA6_2020,Taiwan_4_2020,France_RA739_2020,England_200690300_2020:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_05_current_tree.nw Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,node_14_condensed_6_leaves:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)7:1,(node_16_condensed_2_leaves:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(node_37_condensed_2_leaves:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)16:2,node_2_condensed_10_leaves:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)17:1,(node_4_condensed_2_leaves:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)21:2)20:2,node_5_condensed_5_leaves:0)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(node_19_condensed_2_leaves:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(node_7_condensed_3_leaves:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)39:1,(node_9_condensed_2_leaves:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)45:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)62:2,node_30_condensed_4_leaves:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)67:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)70:2,(node_41_condensed_2_leaves:0)71:1,(node_42_condensed_2_leaves:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(node_46_condensed_16_leaves:0)78:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)80:1)79:1,node_34_condensed_7_leaves:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)83:2,node_25_condensed_15_leaves:0)60:1,node_11_condensed_3_leaves:0)59:3,node_1_condensed_27_leaves:0)1:0;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_05_parsimony_scores.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1771 @@ +#Sample Tree node Parsimony score Optimal (y/n) Parsimony-increasing mutations (for optimal nodes) +Sample1 1 3 n N/A +Sample1 2 4 n N/A +Sample1 Wuhan_HBCDC-HB-06_2020 6 n N/A +Sample1 Wuhan_HBCDC-HB-02_2020 6 n N/A +Sample1 Wuhan_HBCDC-HB-04_2020 6 n N/A +Sample1 Shanghai_SH0075_2020 6 n N/A +Sample1 Shanghai_SH0010_2020 6 n N/A +Sample1 Tianmen_HBCDC-HB-07_2020 6 n N/A +Sample1 Shanghai_SH0041_2020 6 n N/A +Sample1 India_1-31_2020 6 n N/A +Sample1 Shanghai_SH0009_2020 6 n N/A +Sample1 Malaysia_MKAK-CL-2020-5096_2020 6 n N/A +Sample1 3 6 n N/A +Sample1 France_GE1583_2020 11 n N/A +Sample1 Georgia_Tb-390_2020 11 n N/A +Sample1 Spain_Valencia6_2020 11 n N/A +Sample1 Spain_CastillayLeon201437_2020 11 n N/A +Sample1 node_12_condensed_6_leaves 11 n N/A +Sample1 4 6 n N/A +Sample1 Sichuan_IVDC-SC-001_2020 9 n N/A +Sample1 USA_CA1_2020 9 n N/A +Sample1 USA_IL2_2020 9 n N/A +Sample1 Vietnam_CM99_2020 9 n N/A +Sample1 node_13_condensed_3_leaves 9 n N/A +Sample1 5 6 n N/A +Sample1 Shanghai_SH0035_2020 8 n N/A +Sample1 Australia_QLD02_2020 8 n N/A +Sample1 Australia_QLD03_2020 8 n N/A +Sample1 Australia_VIC07_2020 8 n N/A +Sample1 6 8 n N/A +Sample1 Netherlands_Utrecht_16_2020 9 n N/A +Sample1 Netherlands_Utrecht_17_2020 9 n N/A +Sample1 node_14_condensed_6_leaves 8 n N/A +Sample1 7 6 n N/A +Sample1 Shandong_LY003_2020 7 n N/A +Sample1 Shandong_LY005_2020 7 n N/A +Sample1 node_15_condensed_3_leaves 7 n N/A +Sample1 8 6 n N/A +Sample1 node_16_condensed_2_leaves 10 n N/A +Sample1 England_02_2020 6 n N/A +Sample1 9 6 n N/A +Sample1 Chongqing_YC01_2020 7 n N/A +Sample1 10 7 n N/A +Sample1 11 9 n N/A +Sample1 USA_CA-CDPH-UC7_2020 12 n N/A +Sample1 USA_CA-CDPH-UC9_2020 12 n N/A +Sample1 12 9 n N/A +Sample1 node_37_condensed_2_leaves 11 n N/A +Sample1 Malaysia_MKAK-CL-2020-6430_2020 7 n N/A +Sample1 node_17_condensed_3_leaves 7 n N/A +Sample1 13 6 n N/A +Sample1 Shanghai_SH0059_2020 7 n N/A +Sample1 USA_TX1_2020 7 n N/A +Sample1 14 7 n N/A +Sample1 Japan_TY-WK-012_2020 8 n N/A +Sample1 node_26_condensed_2_leaves 8 n N/A +Sample1 Shanghai_SH0004_2020 7 n N/A +Sample1 Germany_BavPat3_2020 7 n N/A +Sample1 Shanghai_SH0005_2020 7 n N/A +Sample1 15 6 n N/A +Sample1 Yunnan_IVDC-YN-003_2020 7 n N/A +Sample1 USA_AZ1_2020 7 n N/A +Sample1 Anhui_SZ005_2020 5 n N/A +Sample1 16 6 n N/A +Sample1 Beijing_233_2020 8 n N/A +Sample1 node_18_condensed_3_leaves 8 n N/A +Sample1 node_2_condensed_10_leaves 6 n N/A +Sample1 Shanghai_SH0007_2020 4 n N/A +Sample1 Hangzhou_ZJU-07_2020 4 n N/A +Sample1 Wuhan_IPBCAMS-WH-03_2019 4 n N/A +Sample1 Wuhan_WH01_2019 4 n N/A +Sample1 Wuhan_WIV07_2019 4 n N/A +Sample1 Shanghai_SH0093_2020 4 n N/A +Sample1 Wuhan_HBCDC-HB-01_2019 4 n N/A +Sample1 Wuhan_IPBCAMS-WH-01_2019 4 n N/A +Sample1 Wuhan_IVDC-HB-04_2020 4 n N/A +Sample1 Wuhan_IVDC-HB-05_2019 4 n N/A +Sample1 Wuhan_WIV05_2019 4 n N/A +Sample1 Sweden_01_2020 4 n N/A +Sample1 Taiwan_2_2020 4 n N/A +Sample1 USA_CA2_2020 4 n N/A +Sample1 Shanghai_SH0040_2020 4 n N/A +Sample1 Singapore_7_2020 4 n N/A +Sample1 Australia_VIC02_2020 4 n N/A +Sample1 France_IDF0515_2020 4 n N/A +Sample1 Hangzhou_ZJU-01_2020 4 n N/A +Sample1 Shanghai_SH0037_2020 4 n N/A +Sample1 Nepal_61_2020 4 n N/A +Sample1 China_WH-09_2020 4 n N/A +Sample1 Jiangxi_IVDC-JX-002_2020 4 n N/A +Sample1 Zhejiang_WZ-01_2020 4 n N/A +Sample1 Japan_KY-V-029_2020 4 n N/A +Sample1 Hangzhou_ZJU-03_2020 4 n N/A +Sample1 Netherlands_Utrecht_12_2020 4 n N/A +Sample1 Singapore_1_2020 4 n N/A +Sample1 Taiwan_NTU02_2020 4 n N/A +Sample1 England_SHEF-BFD36_2020 4 n N/A +Sample1 France_IDF0626_2020 4 n N/A +Sample1 Malaysia_MKAK-CL-2020-7554_2020 4 n N/A +Sample1 Cambodia_0012_2020 4 n N/A +Sample1 17 4 n N/A +Sample1 USA_CA-CDPH-UC2_2020 5 n N/A +Sample1 USA_CA-CDPH-UC3_2020 5 n N/A +Sample1 node_3_condensed_2_leaves 5 n N/A +Sample1 18 4 n N/A +Sample1 node_4_condensed_2_leaves 5 n N/A +Sample1 19 1 y A27669G +Sample1 Germany_NRW-10_2020 2 n N/A +Sample1 Germany_NRW-09_2020 2 n N/A +Sample1 Poland_PL_P1_2020 2 n N/A +Sample1 20 2 n N/A +Sample1 Germany_NRW-04_2020 4 n N/A +Sample1 Germany_NRW-07_2020 4 n N/A +Sample1 21 4 n N/A +Sample1 node_27_condensed_3_leaves 6 n N/A +Sample1 node_5_condensed_5_leaves 2 n N/A +Sample1 22 4 n N/A +Sample1 Malaysia_MKAK-CL-2020-5045_2020 5 n N/A +Sample1 node_6_condensed_3_leaves 5 n N/A +Sample1 23 4 n N/A +Sample1 Jiangsu_JS01_2020 5 n N/A +Sample1 Shanghai_SH0031_2020 5 n N/A +Sample1 24 4 n N/A +Sample1 Australia_NSW02_2020 5 n N/A +Sample1 25 5 n N/A +Sample1 Hangzhou_ZJU-06_2020 6 n N/A +Sample1 26 6 n N/A +Sample1 Shanghai_SH0085_2020 8 n N/A +Sample1 Shanghai_SH0094_2020 8 n N/A +Sample1 27 4 n N/A +Sample1 India_1-27_2020 5 n N/A +Sample1 Shanghai_SH0011_2020 5 n N/A +Sample1 Fujian_13_2020 5 n N/A +Sample1 Singapore_11_2020 5 n N/A +Sample1 USA_WI1_2020 5 n N/A +Sample1 28 4 n N/A +Sample1 Wuhan_HBCDC-HB-05_2020 8 n N/A +Sample1 Shandong_IVDC-SD-001_2020 8 n N/A +Sample1 England_200960041_2020 8 n N/A +Sample1 Australia_NSW05_2020 8 n N/A +Sample1 29 8 n N/A +Sample1 Georgia_Tb-82_2020 10 n N/A +Sample1 Australia_NSW09_2020 10 n N/A +Sample1 30 10 n N/A +Sample1 Canada_BC_25211_2020 11 n N/A +Sample1 Kuwait_KU09_2020 11 n N/A +Sample1 Kuwait_KU18_2020 10 n N/A +Sample1 Kuwait_KU12_2020 10 n N/A +Sample1 Australia_NSW06_2020 10 n N/A +Sample1 31 8 n N/A +Sample1 node_19_condensed_2_leaves 10 n N/A +Sample1 32 8 n N/A +Sample1 Taiwan_CGMH-CGU-04_2020 11 n N/A +Sample1 node_20_condensed_2_leaves 11 n N/A +Sample1 Kuwait_KU17_2020 8 n N/A +Sample1 33 8 n N/A +Sample1 Canada_BC_17397_2020 9 n N/A +Sample1 Canada_BC_13297_2020 9 n N/A +Sample1 34 8 n N/A +Sample1 Australia_QLD09_2020 9 n N/A +Sample1 Australia_NSW07_2020 9 n N/A +Sample1 35 8 n N/A +Sample1 USA_NY1-PV08001_2020 9 n N/A +Sample1 Canada_BC_37_0-2_2020 9 n N/A +Sample1 Canada_BC_69243_2020 9 n N/A +Sample1 36 9 n N/A +Sample1 England_200990002_2020 11 n N/A +Sample1 Germany_BavPat2_2020 11 n N/A +Sample1 37 4 n N/A +Sample1 node_7_condensed_3_leaves 6 n N/A +Sample1 38 4 n N/A +Sample1 Jiangsu_JS02_2020 5 n N/A +Sample1 Shanghai_SH0008_2020 5 n N/A +Sample1 USA_CA5_2020 5 n N/A +Sample1 39 4 n N/A +Sample1 Wuhan_WIV02_2019 5 n N/A +Sample1 node_8_condensed_2_leaves 5 n N/A +Sample1 40 4 n N/A +Sample1 node_9_condensed_2_leaves 5 n N/A +Sample1 41 4 n N/A +Sample1 Japan_Hu_DP_Kng_19-027_2020 5 n N/A +Sample1 node_10_condensed_3_leaves 5 n N/A +Sample1 42 4 n N/A +Sample1 Hangzhou_ZJU-09_2020 5 n N/A +Sample1 Australia_VIC01_2020 5 n N/A +Sample1 43 4 n N/A +Sample1 USA_MA1_2020 5 n N/A +Sample1 44 5 n N/A +Sample1 Shanghai_SH0058_2020 6 n N/A +Sample1 45 6 n N/A +Sample1 node_28_condensed_2_leaves 7 n N/A +Sample1 node_21_condensed_2_leaves 6 n N/A +Sample1 46 4 n N/A +Sample1 47 6 n N/A +Sample1 France_B2334_2020 8 n N/A +Sample1 France_B2340_2020 8 n N/A +Sample1 48 6 n N/A +Sample1 Georgia_Tb-468_2020 7 n N/A +Sample1 Georgia_Tb-537_2020 7 n N/A +Sample1 Georgia_Tb-54_2020 7 n N/A +Sample1 Italy_SPL1_2020 6 n N/A +Sample1 49 4 n N/A +Sample1 England_20102000106_2020 7 n N/A +Sample1 50 7 n N/A +Sample1 England_09c_2020 9 n N/A +Sample1 Brazil_ES-225_2020 9 n N/A +Sample1 England_20100001406_2020 9 n N/A +Sample1 51 9 n N/A +Sample1 node_29_condensed_3_leaves 10 n N/A +Sample1 52 7 n N/A +Sample1 Brazil_SPBR-10_2020 6 n N/A +Sample1 Switzerland_1000477102_2020 8 n N/A +Sample1 Brazil_SPBR-02_2020 8 n N/A +Sample1 England_200990006_2020 8 n N/A +Sample1 Netherlands_Utrecht_18_2020 8 n N/A +Sample1 England_200960515_2020 7 n N/A +Sample1 53 7 n N/A +Sample1 node_22_condensed_3_leaves 8 n N/A +Sample1 54 4 n N/A +Sample1 Netherlands_Utrecht_19_2020 5 n N/A +Sample1 Netherlands_Limburg_6_2020 5 n N/A +Sample1 Netherlands_Naarden_1364774_2020 5 n N/A +Sample1 55 5 n N/A +Sample1 node_23_condensed_2_leaves 6 n N/A +Sample1 56 5 n N/A +Sample1 Netherlands_Oss_1363500_2020 6 n N/A +Sample1 Netherlands_Tilburg_1363354_2020 6 n N/A +Sample1 57 4 n N/A +Sample1 Singapore_8_2020 5 n N/A +Sample1 58 5 n N/A +Sample1 node_24_condensed_3_leaves 6 n N/A +Sample1 59 4 n N/A +Sample1 Shanghai_SH0086_2020 7 n N/A +Sample1 60 7 n N/A +Sample1 Finland_FIN-25_2020 8 n N/A +Sample1 Belgium_DB-03023_2020 8 n N/A +Sample1 Denmark_SSI-102_2020 8 n N/A +Sample1 Denmark_SSI-02_2020 8 n N/A +Sample1 Belgium_BM-03012_2020 8 n N/A +Sample1 England_20100022706_2020 8 n N/A +Sample1 Denmark_SSI-04_2020 8 n N/A +Sample1 Taiwan_NTU03_2020 8 n N/A +Sample1 Finland_FIN03032020A_2020 8 n N/A +Sample1 Switzerland_GE4984_2020 8 n N/A +Sample1 Switzerland_AG0361_2020 8 n N/A +Sample1 Finland_FIN-266_2020 8 n N/A +Sample1 Luxembourg_Lux1_2020 8 n N/A +Sample1 Japan_SMU-0311S3_2020 8 n N/A +Sample1 Denmark_SSI-03_2020 8 n N/A +Sample1 Netherlands_Gelderland_2_2020 8 n N/A +Sample1 Georgia_Tb-273_2020 8 n N/A +Sample1 Belgium_SH-03014_2020 8 n N/A +Sample1 61 8 n N/A +Sample1 62 9 n N/A +Sample1 node_38_condensed_2_leaves 11 n N/A +Sample1 node_30_condensed_4_leaves 9 n N/A +Sample1 63 8 n N/A +Sample1 France_HF2174_2020 10 n N/A +Sample1 France_GE1977_2020 10 n N/A +Sample1 France_HF1684_2020 10 n N/A +Sample1 64 10 n N/A +Sample1 node_39_condensed_2_leaves 11 n N/A +Sample1 Belgium_VAG-03013_2020 8 n N/A +Sample1 65 8 n N/A +Sample1 Netherlands_Utrecht_1363564_2020 12 n N/A +Sample1 node_31_condensed_2_leaves 12 n N/A +Sample1 66 8 n N/A +Sample1 England_20099107406_2020 9 n N/A +Sample1 Georgia_Tb_2020 9 n N/A +Sample1 67 8 n N/A +Sample1 France_BFC2094_2020 9 n N/A +Sample1 France_BFC2147_2020 9 n N/A +Sample1 node_32_condensed_4_leaves 9 n N/A +Sample1 68 8 n N/A +Sample1 Hungary_mbl1_2020 9 n N/A +Sample1 node_33_condensed_5_leaves 9 n N/A +Sample1 69 8 n N/A +Sample1 Nigeria_Lagos01_2020 11 n N/A +Sample1 Netherlands_Delft_1363424_2020 11 n N/A +Sample1 Denmark_SSI-01_2020 11 n N/A +Sample1 England_200990723_2020 11 n N/A +Sample1 Switzerland_TI2045_2020 11 n N/A +Sample1 Switzerland_1000477377_2020 11 n N/A +Sample1 Denmark_SSI-05_2020 11 n N/A +Sample1 Chile_Santiago-2_2020 11 n N/A +Sample1 Brazil_SPBR-14_2020 11 n N/A +Sample1 Finland_FIN-318_2020 11 n N/A +Sample1 Netherlands_Limburg_5_2020 11 n N/A +Sample1 Belgium_DBA-03032_2020 11 n N/A +Sample1 Switzerland_SZ1417_2020 11 n N/A +Sample1 Belgium_GMH-03022_2020 11 n N/A +Sample1 Netherlands_Utrecht_14_2020 11 n N/A +Sample1 Netherlands_Utrecht_1_2020 11 n N/A +Sample1 Finland_FIN03032020C_2020 11 n N/A +Sample1 Netherlands_Berlicum_1363564_2020 11 n N/A +Sample1 70 11 n N/A +Sample1 node_40_condensed_2_leaves 13 n N/A +Sample1 71 11 n N/A +Sample1 node_41_condensed_2_leaves 12 n N/A +Sample1 72 11 n N/A +Sample1 node_42_condensed_2_leaves 12 n N/A +Sample1 73 11 n N/A +Sample1 Switzerland_1000477797_2020 12 n N/A +Sample1 Brazil_BA-312_2020 12 n N/A +Sample1 node_43_condensed_3_leaves 12 n N/A +Sample1 74 11 n N/A +Sample1 Finland_FIN-313_2020 13 n N/A +Sample1 Netherlands_Utrecht_15_2020 13 n N/A +Sample1 75 11 n N/A +Sample1 Switzerland_GE1422_2020 12 n N/A +Sample1 Netherlands_Diemen_1363454_2020 12 n N/A +Sample1 node_44_condensed_3_leaves 12 n N/A +Sample1 76 11 n N/A +Sample1 Switzerland_BE6651_2020 12 n N/A +Sample1 Netherlands_NoordHolland_2_2020 12 n N/A +Sample1 node_45_condensed_6_leaves 12 n N/A +Sample1 Belgium_BC-03016_2020 11 n N/A +Sample1 77 11 n N/A +Sample1 Switzerland_1000477757_2020 12 n N/A +Sample1 Brazil_SPBR-12_2020 12 n N/A +Sample1 Germany_Baden-Wuerttemberg-1_2020 12 n N/A +Sample1 78 11 n N/A +Sample1 node_46_condensed_16_leaves 12 n N/A +Sample1 79 11 n N/A +Sample1 Belgium_UMF-03025_2020 12 n N/A +Sample1 80 12 n N/A +Sample1 node_47_condensed_2_leaves 13 n N/A +Sample1 node_34_condensed_7_leaves 11 n N/A +Sample1 81 8 n N/A +Sample1 Netherlands_NoordHolland_3_2020 9 n N/A +Sample1 Netherlands_Flevoland_1_2020 9 n N/A +Sample1 82 8 n N/A +Sample1 NetherlandsL_Houten_1363498_2020 9 n N/A +Sample1 Italy_UniSR1_2020 9 n N/A +Sample1 France_N1620_2020 9 n N/A +Sample1 node_35_condensed_3_leaves 9 n N/A +Sample1 83 8 n N/A +Sample1 Georgia_Tb-673_2020 10 n N/A +Sample1 France_B2330_2020 10 n N/A +Sample1 France_PL1643_2020 10 n N/A +Sample1 France_HF1988_2020 10 n N/A +Sample1 France_B2348_2020 10 n N/A +Sample1 84 10 n N/A +Sample1 France_B2351_2020 11 n N/A +Sample1 France_B2344_2020 11 n N/A +Sample1 France_B2349_2020 11 n N/A +Sample1 85 10 n N/A +Sample1 France_IDF2256_2020 11 n N/A +Sample1 France_HF1871_2020 11 n N/A +Sample1 Netherlands_Haarlem_1363688_2020 10 n N/A +Sample1 node_36_condensed_6_leaves 10 n N/A +Sample1 node_25_condensed_15_leaves 8 n N/A +Sample1 node_11_condensed_3_leaves 7 n N/A +Sample1 node_1_condensed_27_leaves 4 n N/A +Sample2 1 4 n N/A +Sample2 2 5 n N/A +Sample2 Wuhan_HBCDC-HB-06_2020 7 n N/A +Sample2 Wuhan_HBCDC-HB-02_2020 7 n N/A +Sample2 Wuhan_HBCDC-HB-04_2020 7 n N/A +Sample2 Shanghai_SH0075_2020 7 n N/A +Sample2 Shanghai_SH0010_2020 7 n N/A +Sample2 Tianmen_HBCDC-HB-07_2020 7 n N/A +Sample2 Shanghai_SH0041_2020 7 n N/A +Sample2 India_1-31_2020 7 n N/A +Sample2 Shanghai_SH0009_2020 7 n N/A +Sample2 Malaysia_MKAK-CL-2020-5096_2020 7 n N/A +Sample2 3 7 n N/A +Sample2 France_GE1583_2020 12 n N/A +Sample2 Georgia_Tb-390_2020 12 n N/A +Sample2 Spain_Valencia6_2020 12 n N/A +Sample2 Spain_CastillayLeon201437_2020 12 n N/A +Sample2 node_12_condensed_6_leaves 12 n N/A +Sample2 4 7 n N/A +Sample2 Sichuan_IVDC-SC-001_2020 10 n N/A +Sample2 USA_CA1_2020 10 n N/A +Sample2 USA_IL2_2020 10 n N/A +Sample2 Vietnam_CM99_2020 10 n N/A +Sample2 node_13_condensed_3_leaves 10 n N/A +Sample2 5 7 n N/A +Sample2 Shanghai_SH0035_2020 9 n N/A +Sample2 Australia_QLD02_2020 9 n N/A +Sample2 Australia_QLD03_2020 9 n N/A +Sample2 Australia_VIC07_2020 9 n N/A +Sample2 6 9 n N/A +Sample2 Netherlands_Utrecht_16_2020 10 n N/A +Sample2 Netherlands_Utrecht_17_2020 10 n N/A +Sample2 node_14_condensed_6_leaves 9 n N/A +Sample2 7 7 n N/A +Sample2 Shandong_LY003_2020 8 n N/A +Sample2 Shandong_LY005_2020 8 n N/A +Sample2 node_15_condensed_3_leaves 8 n N/A +Sample2 8 7 n N/A +Sample2 node_16_condensed_2_leaves 11 n N/A +Sample2 England_02_2020 7 n N/A +Sample2 9 7 n N/A +Sample2 Chongqing_YC01_2020 8 n N/A +Sample2 10 8 n N/A +Sample2 11 10 n N/A +Sample2 USA_CA-CDPH-UC7_2020 13 n N/A +Sample2 USA_CA-CDPH-UC9_2020 13 n N/A +Sample2 12 10 n N/A +Sample2 node_37_condensed_2_leaves 12 n N/A +Sample2 Malaysia_MKAK-CL-2020-6430_2020 8 n N/A +Sample2 node_17_condensed_3_leaves 8 n N/A +Sample2 13 7 n N/A +Sample2 Shanghai_SH0059_2020 8 n N/A +Sample2 USA_TX1_2020 8 n N/A +Sample2 14 8 n N/A +Sample2 Japan_TY-WK-012_2020 9 n N/A +Sample2 node_26_condensed_2_leaves 9 n N/A +Sample2 Shanghai_SH0004_2020 8 n N/A +Sample2 Germany_BavPat3_2020 8 n N/A +Sample2 Shanghai_SH0005_2020 8 n N/A +Sample2 15 7 n N/A +Sample2 Yunnan_IVDC-YN-003_2020 8 n N/A +Sample2 USA_AZ1_2020 8 n N/A +Sample2 Anhui_SZ005_2020 6 n N/A +Sample2 16 7 n N/A +Sample2 Beijing_233_2020 9 n N/A +Sample2 node_18_condensed_3_leaves 9 n N/A +Sample2 node_2_condensed_10_leaves 7 n N/A +Sample2 Shanghai_SH0007_2020 5 n N/A +Sample2 Hangzhou_ZJU-07_2020 5 n N/A +Sample2 Wuhan_IPBCAMS-WH-03_2019 5 n N/A +Sample2 Wuhan_WH01_2019 5 n N/A +Sample2 Wuhan_WIV07_2019 5 n N/A +Sample2 Shanghai_SH0093_2020 5 n N/A +Sample2 Wuhan_HBCDC-HB-01_2019 5 n N/A +Sample2 Wuhan_IPBCAMS-WH-01_2019 5 n N/A +Sample2 Wuhan_IVDC-HB-04_2020 5 n N/A +Sample2 Wuhan_IVDC-HB-05_2019 5 n N/A +Sample2 Wuhan_WIV05_2019 5 n N/A +Sample2 Sweden_01_2020 5 n N/A +Sample2 Taiwan_2_2020 5 n N/A +Sample2 USA_CA2_2020 5 n N/A +Sample2 Shanghai_SH0040_2020 5 n N/A +Sample2 Singapore_7_2020 5 n N/A +Sample2 Australia_VIC02_2020 5 n N/A +Sample2 France_IDF0515_2020 5 n N/A +Sample2 Hangzhou_ZJU-01_2020 5 n N/A +Sample2 Shanghai_SH0037_2020 5 n N/A +Sample2 Nepal_61_2020 5 n N/A +Sample2 China_WH-09_2020 5 n N/A +Sample2 Jiangxi_IVDC-JX-002_2020 5 n N/A +Sample2 Zhejiang_WZ-01_2020 5 n N/A +Sample2 Japan_KY-V-029_2020 5 n N/A +Sample2 Hangzhou_ZJU-03_2020 5 n N/A +Sample2 Netherlands_Utrecht_12_2020 5 n N/A +Sample2 Singapore_1_2020 5 n N/A +Sample2 Taiwan_NTU02_2020 5 n N/A +Sample2 England_SHEF-BFD36_2020 5 n N/A +Sample2 France_IDF0626_2020 5 n N/A +Sample2 Malaysia_MKAK-CL-2020-7554_2020 5 n N/A +Sample2 Cambodia_0012_2020 5 n N/A +Sample2 17 5 n N/A +Sample2 USA_CA-CDPH-UC2_2020 6 n N/A +Sample2 USA_CA-CDPH-UC3_2020 6 n N/A +Sample2 node_3_condensed_2_leaves 6 n N/A +Sample2 18 5 n N/A +Sample2 node_4_condensed_2_leaves 6 n N/A +Sample2 19 2 y G14948A,A27669G +Sample2 Germany_NRW-10_2020 3 n N/A +Sample2 Germany_NRW-09_2020 3 n N/A +Sample2 Poland_PL_P1_2020 3 n N/A +Sample2 20 3 n N/A +Sample2 Germany_NRW-04_2020 5 n N/A +Sample2 Germany_NRW-07_2020 5 n N/A +Sample2 21 5 n N/A +Sample2 node_27_condensed_3_leaves 7 n N/A +Sample2 node_5_condensed_5_leaves 3 n N/A +Sample2 22 5 n N/A +Sample2 Malaysia_MKAK-CL-2020-5045_2020 6 n N/A +Sample2 node_6_condensed_3_leaves 6 n N/A +Sample2 23 5 n N/A +Sample2 Jiangsu_JS01_2020 6 n N/A +Sample2 Shanghai_SH0031_2020 6 n N/A +Sample2 24 5 n N/A +Sample2 Australia_NSW02_2020 6 n N/A +Sample2 25 6 n N/A +Sample2 Hangzhou_ZJU-06_2020 7 n N/A +Sample2 26 7 n N/A +Sample2 Shanghai_SH0085_2020 9 n N/A +Sample2 Shanghai_SH0094_2020 9 n N/A +Sample2 27 5 n N/A +Sample2 India_1-27_2020 6 n N/A +Sample2 Shanghai_SH0011_2020 6 n N/A +Sample2 Fujian_13_2020 6 n N/A +Sample2 Singapore_11_2020 6 n N/A +Sample2 USA_WI1_2020 6 n N/A +Sample2 28 5 n N/A +Sample2 Wuhan_HBCDC-HB-05_2020 9 n N/A +Sample2 Shandong_IVDC-SD-001_2020 9 n N/A +Sample2 England_200960041_2020 9 n N/A +Sample2 Australia_NSW05_2020 9 n N/A +Sample2 29 9 n N/A +Sample2 Georgia_Tb-82_2020 11 n N/A +Sample2 Australia_NSW09_2020 11 n N/A +Sample2 30 11 n N/A +Sample2 Canada_BC_25211_2020 12 n N/A +Sample2 Kuwait_KU09_2020 12 n N/A +Sample2 Kuwait_KU18_2020 11 n N/A +Sample2 Kuwait_KU12_2020 11 n N/A +Sample2 Australia_NSW06_2020 11 n N/A +Sample2 31 9 n N/A +Sample2 node_19_condensed_2_leaves 11 n N/A +Sample2 32 9 n N/A +Sample2 Taiwan_CGMH-CGU-04_2020 12 n N/A +Sample2 node_20_condensed_2_leaves 12 n N/A +Sample2 Kuwait_KU17_2020 9 n N/A +Sample2 33 9 n N/A +Sample2 Canada_BC_17397_2020 10 n N/A +Sample2 Canada_BC_13297_2020 10 n N/A +Sample2 34 9 n N/A +Sample2 Australia_QLD09_2020 10 n N/A +Sample2 Australia_NSW07_2020 10 n N/A +Sample2 35 9 n N/A +Sample2 USA_NY1-PV08001_2020 10 n N/A +Sample2 Canada_BC_37_0-2_2020 10 n N/A +Sample2 Canada_BC_69243_2020 10 n N/A +Sample2 36 10 n N/A +Sample2 England_200990002_2020 12 n N/A +Sample2 Germany_BavPat2_2020 12 n N/A +Sample2 37 5 n N/A +Sample2 node_7_condensed_3_leaves 7 n N/A +Sample2 38 5 n N/A +Sample2 Jiangsu_JS02_2020 6 n N/A +Sample2 Shanghai_SH0008_2020 6 n N/A +Sample2 USA_CA5_2020 6 n N/A +Sample2 39 5 n N/A +Sample2 Wuhan_WIV02_2019 6 n N/A +Sample2 node_8_condensed_2_leaves 6 n N/A +Sample2 40 5 n N/A +Sample2 node_9_condensed_2_leaves 6 n N/A +Sample2 41 5 n N/A +Sample2 Japan_Hu_DP_Kng_19-027_2020 6 n N/A +Sample2 node_10_condensed_3_leaves 6 n N/A +Sample2 42 5 n N/A +Sample2 Hangzhou_ZJU-09_2020 6 n N/A +Sample2 Australia_VIC01_2020 6 n N/A +Sample2 43 5 n N/A +Sample2 USA_MA1_2020 6 n N/A +Sample2 44 6 n N/A +Sample2 Shanghai_SH0058_2020 7 n N/A +Sample2 45 7 n N/A +Sample2 node_28_condensed_2_leaves 8 n N/A +Sample2 node_21_condensed_2_leaves 7 n N/A +Sample2 46 5 n N/A +Sample2 47 7 n N/A +Sample2 France_B2334_2020 9 n N/A +Sample2 France_B2340_2020 9 n N/A +Sample2 48 7 n N/A +Sample2 Georgia_Tb-468_2020 8 n N/A +Sample2 Georgia_Tb-537_2020 8 n N/A +Sample2 Georgia_Tb-54_2020 8 n N/A +Sample2 Italy_SPL1_2020 7 n N/A +Sample2 49 5 n N/A +Sample2 England_20102000106_2020 8 n N/A +Sample2 50 8 n N/A +Sample2 England_09c_2020 10 n N/A +Sample2 Brazil_ES-225_2020 10 n N/A +Sample2 England_20100001406_2020 10 n N/A +Sample2 51 10 n N/A +Sample2 node_29_condensed_3_leaves 11 n N/A +Sample2 52 8 n N/A +Sample2 Brazil_SPBR-10_2020 7 n N/A +Sample2 Switzerland_1000477102_2020 9 n N/A +Sample2 Brazil_SPBR-02_2020 9 n N/A +Sample2 England_200990006_2020 9 n N/A +Sample2 Netherlands_Utrecht_18_2020 9 n N/A +Sample2 England_200960515_2020 8 n N/A +Sample2 53 8 n N/A +Sample2 node_22_condensed_3_leaves 9 n N/A +Sample2 54 5 n N/A +Sample2 Netherlands_Utrecht_19_2020 6 n N/A +Sample2 Netherlands_Limburg_6_2020 6 n N/A +Sample2 Netherlands_Naarden_1364774_2020 6 n N/A +Sample2 55 6 n N/A +Sample2 node_23_condensed_2_leaves 7 n N/A +Sample2 56 6 n N/A +Sample2 Netherlands_Oss_1363500_2020 7 n N/A +Sample2 Netherlands_Tilburg_1363354_2020 7 n N/A +Sample2 57 5 n N/A +Sample2 Singapore_8_2020 6 n N/A +Sample2 58 6 n N/A +Sample2 node_24_condensed_3_leaves 7 n N/A +Sample2 59 5 n N/A +Sample2 Shanghai_SH0086_2020 8 n N/A +Sample2 60 8 n N/A +Sample2 Finland_FIN-25_2020 9 n N/A +Sample2 Belgium_DB-03023_2020 9 n N/A +Sample2 Denmark_SSI-102_2020 9 n N/A +Sample2 Denmark_SSI-02_2020 9 n N/A +Sample2 Belgium_BM-03012_2020 9 n N/A +Sample2 England_20100022706_2020 9 n N/A +Sample2 Denmark_SSI-04_2020 9 n N/A +Sample2 Taiwan_NTU03_2020 9 n N/A +Sample2 Finland_FIN03032020A_2020 9 n N/A +Sample2 Switzerland_GE4984_2020 9 n N/A +Sample2 Switzerland_AG0361_2020 9 n N/A +Sample2 Finland_FIN-266_2020 9 n N/A +Sample2 Luxembourg_Lux1_2020 9 n N/A +Sample2 Japan_SMU-0311S3_2020 9 n N/A +Sample2 Denmark_SSI-03_2020 9 n N/A +Sample2 Netherlands_Gelderland_2_2020 9 n N/A +Sample2 Georgia_Tb-273_2020 9 n N/A +Sample2 Belgium_SH-03014_2020 9 n N/A +Sample2 61 9 n N/A +Sample2 62 10 n N/A +Sample2 node_38_condensed_2_leaves 12 n N/A +Sample2 node_30_condensed_4_leaves 10 n N/A +Sample2 63 9 n N/A +Sample2 France_HF2174_2020 11 n N/A +Sample2 France_GE1977_2020 11 n N/A +Sample2 France_HF1684_2020 11 n N/A +Sample2 64 11 n N/A +Sample2 node_39_condensed_2_leaves 12 n N/A +Sample2 Belgium_VAG-03013_2020 9 n N/A +Sample2 65 9 n N/A +Sample2 Netherlands_Utrecht_1363564_2020 13 n N/A +Sample2 node_31_condensed_2_leaves 13 n N/A +Sample2 66 9 n N/A +Sample2 England_20099107406_2020 10 n N/A +Sample2 Georgia_Tb_2020 10 n N/A +Sample2 67 9 n N/A +Sample2 France_BFC2094_2020 10 n N/A +Sample2 France_BFC2147_2020 10 n N/A +Sample2 node_32_condensed_4_leaves 10 n N/A +Sample2 68 9 n N/A +Sample2 Hungary_mbl1_2020 10 n N/A +Sample2 node_33_condensed_5_leaves 10 n N/A +Sample2 69 9 n N/A +Sample2 Nigeria_Lagos01_2020 12 n N/A +Sample2 Netherlands_Delft_1363424_2020 12 n N/A +Sample2 Denmark_SSI-01_2020 12 n N/A +Sample2 England_200990723_2020 12 n N/A +Sample2 Switzerland_TI2045_2020 12 n N/A +Sample2 Switzerland_1000477377_2020 12 n N/A +Sample2 Denmark_SSI-05_2020 12 n N/A +Sample2 Chile_Santiago-2_2020 12 n N/A +Sample2 Brazil_SPBR-14_2020 12 n N/A +Sample2 Finland_FIN-318_2020 12 n N/A +Sample2 Netherlands_Limburg_5_2020 12 n N/A +Sample2 Belgium_DBA-03032_2020 12 n N/A +Sample2 Switzerland_SZ1417_2020 12 n N/A +Sample2 Belgium_GMH-03022_2020 12 n N/A +Sample2 Netherlands_Utrecht_14_2020 12 n N/A +Sample2 Netherlands_Utrecht_1_2020 12 n N/A +Sample2 Finland_FIN03032020C_2020 12 n N/A +Sample2 Netherlands_Berlicum_1363564_2020 12 n N/A +Sample2 70 12 n N/A +Sample2 node_40_condensed_2_leaves 14 n N/A +Sample2 71 12 n N/A +Sample2 node_41_condensed_2_leaves 13 n N/A +Sample2 72 12 n N/A +Sample2 node_42_condensed_2_leaves 13 n N/A +Sample2 73 12 n N/A +Sample2 Switzerland_1000477797_2020 13 n N/A +Sample2 Brazil_BA-312_2020 13 n N/A +Sample2 node_43_condensed_3_leaves 13 n N/A +Sample2 74 12 n N/A +Sample2 Finland_FIN-313_2020 14 n N/A +Sample2 Netherlands_Utrecht_15_2020 14 n N/A +Sample2 75 12 n N/A +Sample2 Switzerland_GE1422_2020 13 n N/A +Sample2 Netherlands_Diemen_1363454_2020 13 n N/A +Sample2 node_44_condensed_3_leaves 13 n N/A +Sample2 76 12 n N/A +Sample2 Switzerland_BE6651_2020 13 n N/A +Sample2 Netherlands_NoordHolland_2_2020 13 n N/A +Sample2 node_45_condensed_6_leaves 13 n N/A +Sample2 Belgium_BC-03016_2020 12 n N/A +Sample2 77 12 n N/A +Sample2 Switzerland_1000477757_2020 13 n N/A +Sample2 Brazil_SPBR-12_2020 13 n N/A +Sample2 Germany_Baden-Wuerttemberg-1_2020 13 n N/A +Sample2 78 12 n N/A +Sample2 node_46_condensed_16_leaves 13 n N/A +Sample2 79 12 n N/A +Sample2 Belgium_UMF-03025_2020 13 n N/A +Sample2 80 13 n N/A +Sample2 node_47_condensed_2_leaves 14 n N/A +Sample2 node_34_condensed_7_leaves 12 n N/A +Sample2 81 9 n N/A +Sample2 Netherlands_NoordHolland_3_2020 10 n N/A +Sample2 Netherlands_Flevoland_1_2020 10 n N/A +Sample2 82 9 n N/A +Sample2 NetherlandsL_Houten_1363498_2020 10 n N/A +Sample2 Italy_UniSR1_2020 10 n N/A +Sample2 France_N1620_2020 10 n N/A +Sample2 node_35_condensed_3_leaves 10 n N/A +Sample2 83 9 n N/A +Sample2 Georgia_Tb-673_2020 11 n N/A +Sample2 France_B2330_2020 11 n N/A +Sample2 France_PL1643_2020 11 n N/A +Sample2 France_HF1988_2020 11 n N/A +Sample2 France_B2348_2020 11 n N/A +Sample2 84 11 n N/A +Sample2 France_B2351_2020 12 n N/A +Sample2 France_B2344_2020 12 n N/A +Sample2 France_B2349_2020 12 n N/A +Sample2 85 11 n N/A +Sample2 France_IDF2256_2020 12 n N/A +Sample2 France_HF1871_2020 12 n N/A +Sample2 Netherlands_Haarlem_1363688_2020 11 n N/A +Sample2 node_36_condensed_6_leaves 11 n N/A +Sample2 node_25_condensed_15_leaves 9 n N/A +Sample2 node_11_condensed_3_leaves 8 n N/A +Sample2 node_1_condensed_27_leaves 5 n N/A +Sample3 1 4 n N/A +Sample3 2 5 n N/A +Sample3 Wuhan_HBCDC-HB-06_2020 7 n N/A +Sample3 Wuhan_HBCDC-HB-02_2020 7 n N/A +Sample3 Wuhan_HBCDC-HB-04_2020 7 n N/A +Sample3 Shanghai_SH0075_2020 7 n N/A +Sample3 Shanghai_SH0010_2020 7 n N/A +Sample3 Tianmen_HBCDC-HB-07_2020 7 n N/A +Sample3 Shanghai_SH0041_2020 7 n N/A +Sample3 India_1-31_2020 7 n N/A +Sample3 Shanghai_SH0009_2020 7 n N/A +Sample3 Malaysia_MKAK-CL-2020-5096_2020 7 n N/A +Sample3 3 7 n N/A +Sample3 France_GE1583_2020 12 n N/A +Sample3 Georgia_Tb-390_2020 12 n N/A +Sample3 Spain_Valencia6_2020 12 n N/A +Sample3 Spain_CastillayLeon201437_2020 12 n N/A +Sample3 node_12_condensed_6_leaves 12 n N/A +Sample3 4 7 n N/A +Sample3 Sichuan_IVDC-SC-001_2020 10 n N/A +Sample3 USA_CA1_2020 10 n N/A +Sample3 USA_IL2_2020 10 n N/A +Sample3 Vietnam_CM99_2020 10 n N/A +Sample3 node_13_condensed_3_leaves 10 n N/A +Sample3 5 7 n N/A +Sample3 Shanghai_SH0035_2020 9 n N/A +Sample3 Australia_QLD02_2020 9 n N/A +Sample3 Australia_QLD03_2020 9 n N/A +Sample3 Australia_VIC07_2020 9 n N/A +Sample3 6 9 n N/A +Sample3 Netherlands_Utrecht_16_2020 10 n N/A +Sample3 Netherlands_Utrecht_17_2020 10 n N/A +Sample3 node_14_condensed_6_leaves 9 n N/A +Sample3 7 7 n N/A +Sample3 Shandong_LY003_2020 8 n N/A +Sample3 Shandong_LY005_2020 8 n N/A +Sample3 node_15_condensed_3_leaves 8 n N/A +Sample3 8 7 n N/A +Sample3 node_16_condensed_2_leaves 11 n N/A +Sample3 England_02_2020 7 n N/A +Sample3 9 7 n N/A +Sample3 Chongqing_YC01_2020 8 n N/A +Sample3 10 8 n N/A +Sample3 11 10 n N/A +Sample3 USA_CA-CDPH-UC7_2020 13 n N/A +Sample3 USA_CA-CDPH-UC9_2020 13 n N/A +Sample3 12 10 n N/A +Sample3 node_37_condensed_2_leaves 12 n N/A +Sample3 Malaysia_MKAK-CL-2020-6430_2020 8 n N/A +Sample3 node_17_condensed_3_leaves 8 n N/A +Sample3 13 7 n N/A +Sample3 Shanghai_SH0059_2020 8 n N/A +Sample3 USA_TX1_2020 8 n N/A +Sample3 14 8 n N/A +Sample3 Japan_TY-WK-012_2020 9 n N/A +Sample3 node_26_condensed_2_leaves 9 n N/A +Sample3 Shanghai_SH0004_2020 8 n N/A +Sample3 Germany_BavPat3_2020 8 n N/A +Sample3 Shanghai_SH0005_2020 8 n N/A +Sample3 15 7 n N/A +Sample3 Yunnan_IVDC-YN-003_2020 8 n N/A +Sample3 USA_AZ1_2020 8 n N/A +Sample3 Anhui_SZ005_2020 6 n N/A +Sample3 16 7 n N/A +Sample3 Beijing_233_2020 9 n N/A +Sample3 node_18_condensed_3_leaves 9 n N/A +Sample3 node_2_condensed_10_leaves 7 n N/A +Sample3 Shanghai_SH0007_2020 5 n N/A +Sample3 Hangzhou_ZJU-07_2020 5 n N/A +Sample3 Wuhan_IPBCAMS-WH-03_2019 5 n N/A +Sample3 Wuhan_WH01_2019 5 n N/A +Sample3 Wuhan_WIV07_2019 5 n N/A +Sample3 Shanghai_SH0093_2020 5 n N/A +Sample3 Wuhan_HBCDC-HB-01_2019 5 n N/A +Sample3 Wuhan_IPBCAMS-WH-01_2019 5 n N/A +Sample3 Wuhan_IVDC-HB-04_2020 5 n N/A +Sample3 Wuhan_IVDC-HB-05_2019 5 n N/A +Sample3 Wuhan_WIV05_2019 5 n N/A +Sample3 Sweden_01_2020 5 n N/A +Sample3 Taiwan_2_2020 5 n N/A +Sample3 USA_CA2_2020 5 n N/A +Sample3 Shanghai_SH0040_2020 5 n N/A +Sample3 Singapore_7_2020 5 n N/A +Sample3 Australia_VIC02_2020 5 n N/A +Sample3 France_IDF0515_2020 5 n N/A +Sample3 Hangzhou_ZJU-01_2020 5 n N/A +Sample3 Shanghai_SH0037_2020 5 n N/A +Sample3 Nepal_61_2020 5 n N/A +Sample3 China_WH-09_2020 5 n N/A +Sample3 Jiangxi_IVDC-JX-002_2020 5 n N/A +Sample3 Zhejiang_WZ-01_2020 5 n N/A +Sample3 Japan_KY-V-029_2020 5 n N/A +Sample3 Hangzhou_ZJU-03_2020 5 n N/A +Sample3 Netherlands_Utrecht_12_2020 5 n N/A +Sample3 Singapore_1_2020 5 n N/A +Sample3 Taiwan_NTU02_2020 5 n N/A +Sample3 England_SHEF-BFD36_2020 5 n N/A +Sample3 France_IDF0626_2020 5 n N/A +Sample3 Malaysia_MKAK-CL-2020-7554_2020 5 n N/A +Sample3 Cambodia_0012_2020 5 n N/A +Sample3 17 5 n N/A +Sample3 USA_CA-CDPH-UC2_2020 6 n N/A +Sample3 USA_CA-CDPH-UC3_2020 6 n N/A +Sample3 node_3_condensed_2_leaves 6 n N/A +Sample3 18 5 n N/A +Sample3 node_4_condensed_2_leaves 6 n N/A +Sample3 19 2 y G14948A,A27669G +Sample3 Germany_NRW-10_2020 3 n N/A +Sample3 Germany_NRW-09_2020 3 n N/A +Sample3 Poland_PL_P1_2020 3 n N/A +Sample3 20 3 n N/A +Sample3 Germany_NRW-04_2020 5 n N/A +Sample3 Germany_NRW-07_2020 5 n N/A +Sample3 21 5 n N/A +Sample3 node_27_condensed_3_leaves 7 n N/A +Sample3 node_5_condensed_5_leaves 3 n N/A +Sample3 22 5 n N/A +Sample3 Malaysia_MKAK-CL-2020-5045_2020 6 n N/A +Sample3 node_6_condensed_3_leaves 6 n N/A +Sample3 23 5 n N/A +Sample3 Jiangsu_JS01_2020 6 n N/A +Sample3 Shanghai_SH0031_2020 6 n N/A +Sample3 24 5 n N/A +Sample3 Australia_NSW02_2020 6 n N/A +Sample3 25 6 n N/A +Sample3 Hangzhou_ZJU-06_2020 7 n N/A +Sample3 26 7 n N/A +Sample3 Shanghai_SH0085_2020 9 n N/A +Sample3 Shanghai_SH0094_2020 9 n N/A +Sample3 27 5 n N/A +Sample3 India_1-27_2020 6 n N/A +Sample3 Shanghai_SH0011_2020 6 n N/A +Sample3 Fujian_13_2020 6 n N/A +Sample3 Singapore_11_2020 6 n N/A +Sample3 USA_WI1_2020 6 n N/A +Sample3 28 5 n N/A +Sample3 Wuhan_HBCDC-HB-05_2020 9 n N/A +Sample3 Shandong_IVDC-SD-001_2020 9 n N/A +Sample3 England_200960041_2020 9 n N/A +Sample3 Australia_NSW05_2020 9 n N/A +Sample3 29 9 n N/A +Sample3 Georgia_Tb-82_2020 11 n N/A +Sample3 Australia_NSW09_2020 11 n N/A +Sample3 30 11 n N/A +Sample3 Canada_BC_25211_2020 12 n N/A +Sample3 Kuwait_KU09_2020 12 n N/A +Sample3 Kuwait_KU18_2020 11 n N/A +Sample3 Kuwait_KU12_2020 11 n N/A +Sample3 Australia_NSW06_2020 11 n N/A +Sample3 31 9 n N/A +Sample3 node_19_condensed_2_leaves 11 n N/A +Sample3 32 9 n N/A +Sample3 Taiwan_CGMH-CGU-04_2020 12 n N/A +Sample3 node_20_condensed_2_leaves 12 n N/A +Sample3 Kuwait_KU17_2020 9 n N/A +Sample3 33 9 n N/A +Sample3 Canada_BC_17397_2020 10 n N/A +Sample3 Canada_BC_13297_2020 10 n N/A +Sample3 34 9 n N/A +Sample3 Australia_QLD09_2020 10 n N/A +Sample3 Australia_NSW07_2020 10 n N/A +Sample3 35 9 n N/A +Sample3 USA_NY1-PV08001_2020 10 n N/A +Sample3 Canada_BC_37_0-2_2020 10 n N/A +Sample3 Canada_BC_69243_2020 10 n N/A +Sample3 36 10 n N/A +Sample3 England_200990002_2020 12 n N/A +Sample3 Germany_BavPat2_2020 12 n N/A +Sample3 37 5 n N/A +Sample3 node_7_condensed_3_leaves 7 n N/A +Sample3 38 5 n N/A +Sample3 Jiangsu_JS02_2020 6 n N/A +Sample3 Shanghai_SH0008_2020 6 n N/A +Sample3 USA_CA5_2020 6 n N/A +Sample3 39 5 n N/A +Sample3 Wuhan_WIV02_2019 6 n N/A +Sample3 node_8_condensed_2_leaves 6 n N/A +Sample3 40 5 n N/A +Sample3 node_9_condensed_2_leaves 6 n N/A +Sample3 41 5 n N/A +Sample3 Japan_Hu_DP_Kng_19-027_2020 6 n N/A +Sample3 node_10_condensed_3_leaves 6 n N/A +Sample3 42 5 n N/A +Sample3 Hangzhou_ZJU-09_2020 6 n N/A +Sample3 Australia_VIC01_2020 6 n N/A +Sample3 43 5 n N/A +Sample3 USA_MA1_2020 6 n N/A +Sample3 44 6 n N/A +Sample3 Shanghai_SH0058_2020 7 n N/A +Sample3 45 7 n N/A +Sample3 node_28_condensed_2_leaves 8 n N/A +Sample3 node_21_condensed_2_leaves 7 n N/A +Sample3 46 5 n N/A +Sample3 47 7 n N/A +Sample3 France_B2334_2020 9 n N/A +Sample3 France_B2340_2020 9 n N/A +Sample3 48 7 n N/A +Sample3 Georgia_Tb-468_2020 8 n N/A +Sample3 Georgia_Tb-537_2020 8 n N/A +Sample3 Georgia_Tb-54_2020 8 n N/A +Sample3 Italy_SPL1_2020 7 n N/A +Sample3 49 5 n N/A +Sample3 England_20102000106_2020 8 n N/A +Sample3 50 8 n N/A +Sample3 England_09c_2020 10 n N/A +Sample3 Brazil_ES-225_2020 10 n N/A +Sample3 England_20100001406_2020 10 n N/A +Sample3 51 10 n N/A +Sample3 node_29_condensed_3_leaves 11 n N/A +Sample3 52 8 n N/A +Sample3 Brazil_SPBR-10_2020 7 n N/A +Sample3 Switzerland_1000477102_2020 9 n N/A +Sample3 Brazil_SPBR-02_2020 9 n N/A +Sample3 England_200990006_2020 9 n N/A +Sample3 Netherlands_Utrecht_18_2020 9 n N/A +Sample3 England_200960515_2020 8 n N/A +Sample3 53 8 n N/A +Sample3 node_22_condensed_3_leaves 9 n N/A +Sample3 54 5 n N/A +Sample3 Netherlands_Utrecht_19_2020 6 n N/A +Sample3 Netherlands_Limburg_6_2020 6 n N/A +Sample3 Netherlands_Naarden_1364774_2020 6 n N/A +Sample3 55 6 n N/A +Sample3 node_23_condensed_2_leaves 7 n N/A +Sample3 56 6 n N/A +Sample3 Netherlands_Oss_1363500_2020 7 n N/A +Sample3 Netherlands_Tilburg_1363354_2020 7 n N/A +Sample3 57 5 n N/A +Sample3 Singapore_8_2020 6 n N/A +Sample3 58 6 n N/A +Sample3 node_24_condensed_3_leaves 7 n N/A +Sample3 59 5 n N/A +Sample3 Shanghai_SH0086_2020 8 n N/A +Sample3 60 8 n N/A +Sample3 Finland_FIN-25_2020 9 n N/A +Sample3 Belgium_DB-03023_2020 9 n N/A +Sample3 Denmark_SSI-102_2020 9 n N/A +Sample3 Denmark_SSI-02_2020 9 n N/A +Sample3 Belgium_BM-03012_2020 9 n N/A +Sample3 England_20100022706_2020 9 n N/A +Sample3 Denmark_SSI-04_2020 9 n N/A +Sample3 Taiwan_NTU03_2020 9 n N/A +Sample3 Finland_FIN03032020A_2020 9 n N/A +Sample3 Switzerland_GE4984_2020 9 n N/A +Sample3 Switzerland_AG0361_2020 9 n N/A +Sample3 Finland_FIN-266_2020 9 n N/A +Sample3 Luxembourg_Lux1_2020 9 n N/A +Sample3 Japan_SMU-0311S3_2020 9 n N/A +Sample3 Denmark_SSI-03_2020 9 n N/A +Sample3 Netherlands_Gelderland_2_2020 9 n N/A +Sample3 Georgia_Tb-273_2020 9 n N/A +Sample3 Belgium_SH-03014_2020 9 n N/A +Sample3 61 9 n N/A +Sample3 62 10 n N/A +Sample3 node_38_condensed_2_leaves 12 n N/A +Sample3 node_30_condensed_4_leaves 10 n N/A +Sample3 63 9 n N/A +Sample3 France_HF2174_2020 11 n N/A +Sample3 France_GE1977_2020 11 n N/A +Sample3 France_HF1684_2020 11 n N/A +Sample3 64 11 n N/A +Sample3 node_39_condensed_2_leaves 12 n N/A +Sample3 Belgium_VAG-03013_2020 9 n N/A +Sample3 65 9 n N/A +Sample3 Netherlands_Utrecht_1363564_2020 13 n N/A +Sample3 node_31_condensed_2_leaves 13 n N/A +Sample3 66 9 n N/A +Sample3 England_20099107406_2020 10 n N/A +Sample3 Georgia_Tb_2020 10 n N/A +Sample3 67 9 n N/A +Sample3 France_BFC2094_2020 10 n N/A +Sample3 France_BFC2147_2020 10 n N/A +Sample3 node_32_condensed_4_leaves 10 n N/A +Sample3 68 9 n N/A +Sample3 Hungary_mbl1_2020 10 n N/A +Sample3 node_33_condensed_5_leaves 10 n N/A +Sample3 69 9 n N/A +Sample3 Nigeria_Lagos01_2020 12 n N/A +Sample3 Netherlands_Delft_1363424_2020 12 n N/A +Sample3 Denmark_SSI-01_2020 12 n N/A +Sample3 England_200990723_2020 12 n N/A +Sample3 Switzerland_TI2045_2020 12 n N/A +Sample3 Switzerland_1000477377_2020 12 n N/A +Sample3 Denmark_SSI-05_2020 12 n N/A +Sample3 Chile_Santiago-2_2020 12 n N/A +Sample3 Brazil_SPBR-14_2020 12 n N/A +Sample3 Finland_FIN-318_2020 12 n N/A +Sample3 Netherlands_Limburg_5_2020 12 n N/A +Sample3 Belgium_DBA-03032_2020 12 n N/A +Sample3 Switzerland_SZ1417_2020 12 n N/A +Sample3 Belgium_GMH-03022_2020 12 n N/A +Sample3 Netherlands_Utrecht_14_2020 12 n N/A +Sample3 Netherlands_Utrecht_1_2020 12 n N/A +Sample3 Finland_FIN03032020C_2020 12 n N/A +Sample3 Netherlands_Berlicum_1363564_2020 12 n N/A +Sample3 70 12 n N/A +Sample3 node_40_condensed_2_leaves 14 n N/A +Sample3 71 12 n N/A +Sample3 node_41_condensed_2_leaves 13 n N/A +Sample3 72 12 n N/A +Sample3 node_42_condensed_2_leaves 13 n N/A +Sample3 73 12 n N/A +Sample3 Switzerland_1000477797_2020 13 n N/A +Sample3 Brazil_BA-312_2020 13 n N/A +Sample3 node_43_condensed_3_leaves 13 n N/A +Sample3 74 12 n N/A +Sample3 Finland_FIN-313_2020 14 n N/A +Sample3 Netherlands_Utrecht_15_2020 14 n N/A +Sample3 75 12 n N/A +Sample3 Switzerland_GE1422_2020 13 n N/A +Sample3 Netherlands_Diemen_1363454_2020 13 n N/A +Sample3 node_44_condensed_3_leaves 13 n N/A +Sample3 76 12 n N/A +Sample3 Switzerland_BE6651_2020 13 n N/A +Sample3 Netherlands_NoordHolland_2_2020 13 n N/A +Sample3 node_45_condensed_6_leaves 13 n N/A +Sample3 Belgium_BC-03016_2020 12 n N/A +Sample3 77 12 n N/A +Sample3 Switzerland_1000477757_2020 13 n N/A +Sample3 Brazil_SPBR-12_2020 13 n N/A +Sample3 Germany_Baden-Wuerttemberg-1_2020 13 n N/A +Sample3 78 12 n N/A +Sample3 node_46_condensed_16_leaves 13 n N/A +Sample3 79 12 n N/A +Sample3 Belgium_UMF-03025_2020 13 n N/A +Sample3 80 13 n N/A +Sample3 node_47_condensed_2_leaves 14 n N/A +Sample3 node_34_condensed_7_leaves 12 n N/A +Sample3 81 9 n N/A +Sample3 Netherlands_NoordHolland_3_2020 10 n N/A +Sample3 Netherlands_Flevoland_1_2020 10 n N/A +Sample3 82 9 n N/A +Sample3 NetherlandsL_Houten_1363498_2020 10 n N/A +Sample3 Italy_UniSR1_2020 10 n N/A +Sample3 France_N1620_2020 10 n N/A +Sample3 node_35_condensed_3_leaves 10 n N/A +Sample3 83 9 n N/A +Sample3 Georgia_Tb-673_2020 11 n N/A +Sample3 France_B2330_2020 11 n N/A +Sample3 France_PL1643_2020 11 n N/A +Sample3 France_HF1988_2020 11 n N/A +Sample3 France_B2348_2020 11 n N/A +Sample3 84 11 n N/A +Sample3 France_B2351_2020 12 n N/A +Sample3 France_B2344_2020 12 n N/A +Sample3 France_B2349_2020 12 n N/A +Sample3 85 11 n N/A +Sample3 France_IDF2256_2020 12 n N/A +Sample3 France_HF1871_2020 12 n N/A +Sample3 Netherlands_Haarlem_1363688_2020 11 n N/A +Sample3 node_36_condensed_6_leaves 11 n N/A +Sample3 node_25_condensed_15_leaves 9 n N/A +Sample3 node_11_condensed_3_leaves 8 n N/A +Sample3 node_1_condensed_27_leaves 5 n N/A +Sample4 1 5 n N/A +Sample4 2 6 n N/A +Sample4 Wuhan_HBCDC-HB-06_2020 8 n N/A +Sample4 Wuhan_HBCDC-HB-02_2020 8 n N/A +Sample4 Wuhan_HBCDC-HB-04_2020 8 n N/A +Sample4 Shanghai_SH0075_2020 8 n N/A +Sample4 Shanghai_SH0010_2020 8 n N/A +Sample4 Tianmen_HBCDC-HB-07_2020 8 n N/A +Sample4 Shanghai_SH0041_2020 8 n N/A +Sample4 India_1-31_2020 8 n N/A +Sample4 Shanghai_SH0009_2020 8 n N/A +Sample4 Malaysia_MKAK-CL-2020-5096_2020 8 n N/A +Sample4 3 8 n N/A +Sample4 France_GE1583_2020 13 n N/A +Sample4 Georgia_Tb-390_2020 13 n N/A +Sample4 Spain_Valencia6_2020 13 n N/A +Sample4 Spain_CastillayLeon201437_2020 13 n N/A +Sample4 node_12_condensed_6_leaves 13 n N/A +Sample4 4 8 n N/A +Sample4 Sichuan_IVDC-SC-001_2020 11 n N/A +Sample4 USA_CA1_2020 11 n N/A +Sample4 USA_IL2_2020 11 n N/A +Sample4 Vietnam_CM99_2020 11 n N/A +Sample4 node_13_condensed_3_leaves 11 n N/A +Sample4 5 8 n N/A +Sample4 Shanghai_SH0035_2020 10 n N/A +Sample4 Australia_QLD02_2020 10 n N/A +Sample4 Australia_QLD03_2020 10 n N/A +Sample4 Australia_VIC07_2020 10 n N/A +Sample4 6 10 n N/A +Sample4 Netherlands_Utrecht_16_2020 11 n N/A +Sample4 Netherlands_Utrecht_17_2020 11 n N/A +Sample4 node_14_condensed_6_leaves 10 n N/A +Sample4 7 8 n N/A +Sample4 Shandong_LY003_2020 9 n N/A +Sample4 Shandong_LY005_2020 9 n N/A +Sample4 node_15_condensed_3_leaves 9 n N/A +Sample4 8 8 n N/A +Sample4 node_16_condensed_2_leaves 12 n N/A +Sample4 England_02_2020 8 n N/A +Sample4 9 8 n N/A +Sample4 Chongqing_YC01_2020 9 n N/A +Sample4 10 9 n N/A +Sample4 11 11 n N/A +Sample4 USA_CA-CDPH-UC7_2020 14 n N/A +Sample4 USA_CA-CDPH-UC9_2020 14 n N/A +Sample4 12 11 n N/A +Sample4 node_37_condensed_2_leaves 13 n N/A +Sample4 Malaysia_MKAK-CL-2020-6430_2020 9 n N/A +Sample4 node_17_condensed_3_leaves 9 n N/A +Sample4 13 8 n N/A +Sample4 Shanghai_SH0059_2020 9 n N/A +Sample4 USA_TX1_2020 9 n N/A +Sample4 14 9 n N/A +Sample4 Japan_TY-WK-012_2020 10 n N/A +Sample4 node_26_condensed_2_leaves 10 n N/A +Sample4 Shanghai_SH0004_2020 9 n N/A +Sample4 Germany_BavPat3_2020 9 n N/A +Sample4 Shanghai_SH0005_2020 9 n N/A +Sample4 15 8 n N/A +Sample4 Yunnan_IVDC-YN-003_2020 9 n N/A +Sample4 USA_AZ1_2020 9 n N/A +Sample4 Anhui_SZ005_2020 7 n N/A +Sample4 16 8 n N/A +Sample4 Beijing_233_2020 10 n N/A +Sample4 node_18_condensed_3_leaves 10 n N/A +Sample4 node_2_condensed_10_leaves 8 n N/A +Sample4 Shanghai_SH0007_2020 6 n N/A +Sample4 Hangzhou_ZJU-07_2020 6 n N/A +Sample4 Wuhan_IPBCAMS-WH-03_2019 6 n N/A +Sample4 Wuhan_WH01_2019 6 n N/A +Sample4 Wuhan_WIV07_2019 6 n N/A +Sample4 Shanghai_SH0093_2020 6 n N/A +Sample4 Wuhan_HBCDC-HB-01_2019 6 n N/A +Sample4 Wuhan_IPBCAMS-WH-01_2019 6 n N/A +Sample4 Wuhan_IVDC-HB-04_2020 6 n N/A +Sample4 Wuhan_IVDC-HB-05_2019 6 n N/A +Sample4 Wuhan_WIV05_2019 6 n N/A +Sample4 Sweden_01_2020 6 n N/A +Sample4 Taiwan_2_2020 6 n N/A +Sample4 USA_CA2_2020 6 n N/A +Sample4 Shanghai_SH0040_2020 6 n N/A +Sample4 Singapore_7_2020 6 n N/A +Sample4 Australia_VIC02_2020 6 n N/A +Sample4 France_IDF0515_2020 6 n N/A +Sample4 Hangzhou_ZJU-01_2020 6 n N/A +Sample4 Shanghai_SH0037_2020 6 n N/A +Sample4 Nepal_61_2020 6 n N/A +Sample4 China_WH-09_2020 6 n N/A +Sample4 Jiangxi_IVDC-JX-002_2020 6 n N/A +Sample4 Zhejiang_WZ-01_2020 6 n N/A +Sample4 Japan_KY-V-029_2020 6 n N/A +Sample4 Hangzhou_ZJU-03_2020 6 n N/A +Sample4 Netherlands_Utrecht_12_2020 6 n N/A +Sample4 Singapore_1_2020 6 n N/A +Sample4 Taiwan_NTU02_2020 6 n N/A +Sample4 England_SHEF-BFD36_2020 6 n N/A +Sample4 France_IDF0626_2020 6 n N/A +Sample4 Malaysia_MKAK-CL-2020-7554_2020 6 n N/A +Sample4 Cambodia_0012_2020 6 n N/A +Sample4 17 6 n N/A +Sample4 USA_CA-CDPH-UC2_2020 7 n N/A +Sample4 USA_CA-CDPH-UC3_2020 7 n N/A +Sample4 node_3_condensed_2_leaves 7 n N/A +Sample4 18 6 n N/A +Sample4 node_4_condensed_2_leaves 7 n N/A +Sample4 19 3 y G14948A,A23013G,A27669G +Sample4 Germany_NRW-10_2020 4 n N/A +Sample4 Germany_NRW-09_2020 4 n N/A +Sample4 Poland_PL_P1_2020 4 n N/A +Sample4 20 4 n N/A +Sample4 Germany_NRW-04_2020 6 n N/A +Sample4 Germany_NRW-07_2020 6 n N/A +Sample4 21 6 n N/A +Sample4 node_27_condensed_3_leaves 8 n N/A +Sample4 node_5_condensed_5_leaves 4 n N/A +Sample4 22 6 n N/A +Sample4 Malaysia_MKAK-CL-2020-5045_2020 7 n N/A +Sample4 node_6_condensed_3_leaves 7 n N/A +Sample4 23 6 n N/A +Sample4 Jiangsu_JS01_2020 7 n N/A +Sample4 Shanghai_SH0031_2020 7 n N/A +Sample4 24 6 n N/A +Sample4 Australia_NSW02_2020 7 n N/A +Sample4 25 7 n N/A +Sample4 Hangzhou_ZJU-06_2020 8 n N/A +Sample4 26 8 n N/A +Sample4 Shanghai_SH0085_2020 10 n N/A +Sample4 Shanghai_SH0094_2020 10 n N/A +Sample4 27 6 n N/A +Sample4 India_1-27_2020 7 n N/A +Sample4 Shanghai_SH0011_2020 7 n N/A +Sample4 Fujian_13_2020 7 n N/A +Sample4 Singapore_11_2020 7 n N/A +Sample4 USA_WI1_2020 7 n N/A +Sample4 28 6 n N/A +Sample4 Wuhan_HBCDC-HB-05_2020 10 n N/A +Sample4 Shandong_IVDC-SD-001_2020 10 n N/A +Sample4 England_200960041_2020 10 n N/A +Sample4 Australia_NSW05_2020 10 n N/A +Sample4 29 10 n N/A +Sample4 Georgia_Tb-82_2020 12 n N/A +Sample4 Australia_NSW09_2020 12 n N/A +Sample4 30 12 n N/A +Sample4 Canada_BC_25211_2020 13 n N/A +Sample4 Kuwait_KU09_2020 13 n N/A +Sample4 Kuwait_KU18_2020 12 n N/A +Sample4 Kuwait_KU12_2020 12 n N/A +Sample4 Australia_NSW06_2020 12 n N/A +Sample4 31 10 n N/A +Sample4 node_19_condensed_2_leaves 12 n N/A +Sample4 32 10 n N/A +Sample4 Taiwan_CGMH-CGU-04_2020 13 n N/A +Sample4 node_20_condensed_2_leaves 13 n N/A +Sample4 Kuwait_KU17_2020 10 n N/A +Sample4 33 10 n N/A +Sample4 Canada_BC_17397_2020 11 n N/A +Sample4 Canada_BC_13297_2020 11 n N/A +Sample4 34 10 n N/A +Sample4 Australia_QLD09_2020 11 n N/A +Sample4 Australia_NSW07_2020 11 n N/A +Sample4 35 10 n N/A +Sample4 USA_NY1-PV08001_2020 11 n N/A +Sample4 Canada_BC_37_0-2_2020 11 n N/A +Sample4 Canada_BC_69243_2020 11 n N/A +Sample4 36 11 n N/A +Sample4 England_200990002_2020 13 n N/A +Sample4 Germany_BavPat2_2020 13 n N/A +Sample4 37 6 n N/A +Sample4 node_7_condensed_3_leaves 8 n N/A +Sample4 38 6 n N/A +Sample4 Jiangsu_JS02_2020 7 n N/A +Sample4 Shanghai_SH0008_2020 7 n N/A +Sample4 USA_CA5_2020 7 n N/A +Sample4 39 6 n N/A +Sample4 Wuhan_WIV02_2019 7 n N/A +Sample4 node_8_condensed_2_leaves 7 n N/A +Sample4 40 6 n N/A +Sample4 node_9_condensed_2_leaves 7 n N/A +Sample4 41 6 n N/A +Sample4 Japan_Hu_DP_Kng_19-027_2020 7 n N/A +Sample4 node_10_condensed_3_leaves 7 n N/A +Sample4 42 6 n N/A +Sample4 Hangzhou_ZJU-09_2020 7 n N/A +Sample4 Australia_VIC01_2020 7 n N/A +Sample4 43 6 n N/A +Sample4 USA_MA1_2020 7 n N/A +Sample4 44 7 n N/A +Sample4 Shanghai_SH0058_2020 8 n N/A +Sample4 45 8 n N/A +Sample4 node_28_condensed_2_leaves 9 n N/A +Sample4 node_21_condensed_2_leaves 8 n N/A +Sample4 46 6 n N/A +Sample4 47 8 n N/A +Sample4 France_B2334_2020 10 n N/A +Sample4 France_B2340_2020 10 n N/A +Sample4 48 8 n N/A +Sample4 Georgia_Tb-468_2020 9 n N/A +Sample4 Georgia_Tb-537_2020 9 n N/A +Sample4 Georgia_Tb-54_2020 9 n N/A +Sample4 Italy_SPL1_2020 8 n N/A +Sample4 49 6 n N/A +Sample4 England_20102000106_2020 9 n N/A +Sample4 50 9 n N/A +Sample4 England_09c_2020 11 n N/A +Sample4 Brazil_ES-225_2020 11 n N/A +Sample4 England_20100001406_2020 11 n N/A +Sample4 51 11 n N/A +Sample4 node_29_condensed_3_leaves 12 n N/A +Sample4 52 9 n N/A +Sample4 Brazil_SPBR-10_2020 8 n N/A +Sample4 Switzerland_1000477102_2020 10 n N/A +Sample4 Brazil_SPBR-02_2020 10 n N/A +Sample4 England_200990006_2020 10 n N/A +Sample4 Netherlands_Utrecht_18_2020 10 n N/A +Sample4 England_200960515_2020 9 n N/A +Sample4 53 9 n N/A +Sample4 node_22_condensed_3_leaves 10 n N/A +Sample4 54 6 n N/A +Sample4 Netherlands_Utrecht_19_2020 7 n N/A +Sample4 Netherlands_Limburg_6_2020 7 n N/A +Sample4 Netherlands_Naarden_1364774_2020 7 n N/A +Sample4 55 7 n N/A +Sample4 node_23_condensed_2_leaves 8 n N/A +Sample4 56 7 n N/A +Sample4 Netherlands_Oss_1363500_2020 8 n N/A +Sample4 Netherlands_Tilburg_1363354_2020 8 n N/A +Sample4 57 6 n N/A +Sample4 Singapore_8_2020 7 n N/A +Sample4 58 7 n N/A +Sample4 node_24_condensed_3_leaves 8 n N/A +Sample4 59 6 n N/A +Sample4 Shanghai_SH0086_2020 9 n N/A +Sample4 60 9 n N/A +Sample4 Finland_FIN-25_2020 10 n N/A +Sample4 Belgium_DB-03023_2020 10 n N/A +Sample4 Denmark_SSI-102_2020 10 n N/A +Sample4 Denmark_SSI-02_2020 10 n N/A +Sample4 Belgium_BM-03012_2020 10 n N/A +Sample4 England_20100022706_2020 10 n N/A +Sample4 Denmark_SSI-04_2020 10 n N/A +Sample4 Taiwan_NTU03_2020 10 n N/A +Sample4 Finland_FIN03032020A_2020 10 n N/A +Sample4 Switzerland_GE4984_2020 10 n N/A +Sample4 Switzerland_AG0361_2020 10 n N/A +Sample4 Finland_FIN-266_2020 10 n N/A +Sample4 Luxembourg_Lux1_2020 10 n N/A +Sample4 Japan_SMU-0311S3_2020 10 n N/A +Sample4 Denmark_SSI-03_2020 10 n N/A +Sample4 Netherlands_Gelderland_2_2020 10 n N/A +Sample4 Georgia_Tb-273_2020 10 n N/A +Sample4 Belgium_SH-03014_2020 10 n N/A +Sample4 61 10 n N/A +Sample4 62 11 n N/A +Sample4 node_38_condensed_2_leaves 13 n N/A +Sample4 node_30_condensed_4_leaves 11 n N/A +Sample4 63 10 n N/A +Sample4 France_HF2174_2020 12 n N/A +Sample4 France_GE1977_2020 12 n N/A +Sample4 France_HF1684_2020 12 n N/A +Sample4 64 12 n N/A +Sample4 node_39_condensed_2_leaves 13 n N/A +Sample4 Belgium_VAG-03013_2020 10 n N/A +Sample4 65 10 n N/A +Sample4 Netherlands_Utrecht_1363564_2020 14 n N/A +Sample4 node_31_condensed_2_leaves 14 n N/A +Sample4 66 10 n N/A +Sample4 England_20099107406_2020 11 n N/A +Sample4 Georgia_Tb_2020 11 n N/A +Sample4 67 10 n N/A +Sample4 France_BFC2094_2020 11 n N/A +Sample4 France_BFC2147_2020 11 n N/A +Sample4 node_32_condensed_4_leaves 11 n N/A +Sample4 68 10 n N/A +Sample4 Hungary_mbl1_2020 11 n N/A +Sample4 node_33_condensed_5_leaves 11 n N/A +Sample4 69 10 n N/A +Sample4 Nigeria_Lagos01_2020 13 n N/A +Sample4 Netherlands_Delft_1363424_2020 13 n N/A +Sample4 Denmark_SSI-01_2020 13 n N/A +Sample4 England_200990723_2020 13 n N/A +Sample4 Switzerland_TI2045_2020 13 n N/A +Sample4 Switzerland_1000477377_2020 13 n N/A +Sample4 Denmark_SSI-05_2020 13 n N/A +Sample4 Chile_Santiago-2_2020 13 n N/A +Sample4 Brazil_SPBR-14_2020 13 n N/A +Sample4 Finland_FIN-318_2020 13 n N/A +Sample4 Netherlands_Limburg_5_2020 13 n N/A +Sample4 Belgium_DBA-03032_2020 13 n N/A +Sample4 Switzerland_SZ1417_2020 13 n N/A +Sample4 Belgium_GMH-03022_2020 13 n N/A +Sample4 Netherlands_Utrecht_14_2020 13 n N/A +Sample4 Netherlands_Utrecht_1_2020 13 n N/A +Sample4 Finland_FIN03032020C_2020 13 n N/A +Sample4 Netherlands_Berlicum_1363564_2020 13 n N/A +Sample4 70 13 n N/A +Sample4 node_40_condensed_2_leaves 15 n N/A +Sample4 71 13 n N/A +Sample4 node_41_condensed_2_leaves 14 n N/A +Sample4 72 13 n N/A +Sample4 node_42_condensed_2_leaves 14 n N/A +Sample4 73 13 n N/A +Sample4 Switzerland_1000477797_2020 14 n N/A +Sample4 Brazil_BA-312_2020 14 n N/A +Sample4 node_43_condensed_3_leaves 14 n N/A +Sample4 74 13 n N/A +Sample4 Finland_FIN-313_2020 15 n N/A +Sample4 Netherlands_Utrecht_15_2020 15 n N/A +Sample4 75 13 n N/A +Sample4 Switzerland_GE1422_2020 14 n N/A +Sample4 Netherlands_Diemen_1363454_2020 14 n N/A +Sample4 node_44_condensed_3_leaves 14 n N/A +Sample4 76 13 n N/A +Sample4 Switzerland_BE6651_2020 14 n N/A +Sample4 Netherlands_NoordHolland_2_2020 14 n N/A +Sample4 node_45_condensed_6_leaves 14 n N/A +Sample4 Belgium_BC-03016_2020 13 n N/A +Sample4 77 13 n N/A +Sample4 Switzerland_1000477757_2020 14 n N/A +Sample4 Brazil_SPBR-12_2020 14 n N/A +Sample4 Germany_Baden-Wuerttemberg-1_2020 14 n N/A +Sample4 78 13 n N/A +Sample4 node_46_condensed_16_leaves 14 n N/A +Sample4 79 13 n N/A +Sample4 Belgium_UMF-03025_2020 14 n N/A +Sample4 80 14 n N/A +Sample4 node_47_condensed_2_leaves 15 n N/A +Sample4 node_34_condensed_7_leaves 13 n N/A +Sample4 81 10 n N/A +Sample4 Netherlands_NoordHolland_3_2020 11 n N/A +Sample4 Netherlands_Flevoland_1_2020 11 n N/A +Sample4 82 10 n N/A +Sample4 NetherlandsL_Houten_1363498_2020 11 n N/A +Sample4 Italy_UniSR1_2020 11 n N/A +Sample4 France_N1620_2020 11 n N/A +Sample4 node_35_condensed_3_leaves 11 n N/A +Sample4 83 10 n N/A +Sample4 Georgia_Tb-673_2020 12 n N/A +Sample4 France_B2330_2020 12 n N/A +Sample4 France_PL1643_2020 12 n N/A +Sample4 France_HF1988_2020 12 n N/A +Sample4 France_B2348_2020 12 n N/A +Sample4 84 12 n N/A +Sample4 France_B2351_2020 13 n N/A +Sample4 France_B2344_2020 13 n N/A +Sample4 France_B2349_2020 13 n N/A +Sample4 85 12 n N/A +Sample4 France_IDF2256_2020 13 n N/A +Sample4 France_HF1871_2020 13 n N/A +Sample4 Netherlands_Haarlem_1363688_2020 12 n N/A +Sample4 node_36_condensed_6_leaves 12 n N/A +Sample4 node_25_condensed_15_leaves 10 n N/A +Sample4 node_11_condensed_3_leaves 9 n N/A +Sample4 node_1_condensed_27_leaves 6 n N/A +Sample5 1 5 n N/A +Sample5 2 6 n N/A +Sample5 Wuhan_HBCDC-HB-06_2020 8 n N/A +Sample5 Wuhan_HBCDC-HB-02_2020 8 n N/A +Sample5 Wuhan_HBCDC-HB-04_2020 8 n N/A +Sample5 Shanghai_SH0075_2020 8 n N/A +Sample5 Shanghai_SH0010_2020 8 n N/A +Sample5 Tianmen_HBCDC-HB-07_2020 8 n N/A +Sample5 Shanghai_SH0041_2020 8 n N/A +Sample5 India_1-31_2020 8 n N/A +Sample5 Shanghai_SH0009_2020 8 n N/A +Sample5 Malaysia_MKAK-CL-2020-5096_2020 8 n N/A +Sample5 3 8 n N/A +Sample5 France_GE1583_2020 13 n N/A +Sample5 Georgia_Tb-390_2020 13 n N/A +Sample5 Spain_Valencia6_2020 13 n N/A +Sample5 Spain_CastillayLeon201437_2020 13 n N/A +Sample5 node_12_condensed_6_leaves 13 n N/A +Sample5 4 8 n N/A +Sample5 Sichuan_IVDC-SC-001_2020 11 n N/A +Sample5 USA_CA1_2020 11 n N/A +Sample5 USA_IL2_2020 11 n N/A +Sample5 Vietnam_CM99_2020 11 n N/A +Sample5 node_13_condensed_3_leaves 11 n N/A +Sample5 5 8 n N/A +Sample5 Shanghai_SH0035_2020 10 n N/A +Sample5 Australia_QLD02_2020 10 n N/A +Sample5 Australia_QLD03_2020 10 n N/A +Sample5 Australia_VIC07_2020 10 n N/A +Sample5 6 10 n N/A +Sample5 Netherlands_Utrecht_16_2020 11 n N/A +Sample5 Netherlands_Utrecht_17_2020 11 n N/A +Sample5 node_14_condensed_6_leaves 10 n N/A +Sample5 7 8 n N/A +Sample5 Shandong_LY003_2020 9 n N/A +Sample5 Shandong_LY005_2020 9 n N/A +Sample5 node_15_condensed_3_leaves 9 n N/A +Sample5 8 8 n N/A +Sample5 node_16_condensed_2_leaves 12 n N/A +Sample5 England_02_2020 8 n N/A +Sample5 9 8 n N/A +Sample5 Chongqing_YC01_2020 9 n N/A +Sample5 10 9 n N/A +Sample5 11 11 n N/A +Sample5 USA_CA-CDPH-UC7_2020 14 n N/A +Sample5 USA_CA-CDPH-UC9_2020 14 n N/A +Sample5 12 11 n N/A +Sample5 node_37_condensed_2_leaves 13 n N/A +Sample5 Malaysia_MKAK-CL-2020-6430_2020 9 n N/A +Sample5 node_17_condensed_3_leaves 9 n N/A +Sample5 13 8 n N/A +Sample5 Shanghai_SH0059_2020 9 n N/A +Sample5 USA_TX1_2020 9 n N/A +Sample5 14 9 n N/A +Sample5 Japan_TY-WK-012_2020 10 n N/A +Sample5 node_26_condensed_2_leaves 10 n N/A +Sample5 Shanghai_SH0004_2020 9 n N/A +Sample5 Germany_BavPat3_2020 9 n N/A +Sample5 Shanghai_SH0005_2020 9 n N/A +Sample5 15 8 n N/A +Sample5 Yunnan_IVDC-YN-003_2020 9 n N/A +Sample5 USA_AZ1_2020 9 n N/A +Sample5 Anhui_SZ005_2020 7 n N/A +Sample5 16 8 n N/A +Sample5 Beijing_233_2020 10 n N/A +Sample5 node_18_condensed_3_leaves 10 n N/A +Sample5 node_2_condensed_10_leaves 8 n N/A +Sample5 Shanghai_SH0007_2020 6 n N/A +Sample5 Hangzhou_ZJU-07_2020 6 n N/A +Sample5 Wuhan_IPBCAMS-WH-03_2019 6 n N/A +Sample5 Wuhan_WH01_2019 6 n N/A +Sample5 Wuhan_WIV07_2019 6 n N/A +Sample5 Shanghai_SH0093_2020 6 n N/A +Sample5 Wuhan_HBCDC-HB-01_2019 6 n N/A +Sample5 Wuhan_IPBCAMS-WH-01_2019 6 n N/A +Sample5 Wuhan_IVDC-HB-04_2020 6 n N/A +Sample5 Wuhan_IVDC-HB-05_2019 6 n N/A +Sample5 Wuhan_WIV05_2019 6 n N/A +Sample5 Sweden_01_2020 6 n N/A +Sample5 Taiwan_2_2020 6 n N/A +Sample5 USA_CA2_2020 6 n N/A +Sample5 Shanghai_SH0040_2020 6 n N/A +Sample5 Singapore_7_2020 6 n N/A +Sample5 Australia_VIC02_2020 6 n N/A +Sample5 France_IDF0515_2020 6 n N/A +Sample5 Hangzhou_ZJU-01_2020 6 n N/A +Sample5 Shanghai_SH0037_2020 6 n N/A +Sample5 Nepal_61_2020 6 n N/A +Sample5 China_WH-09_2020 6 n N/A +Sample5 Jiangxi_IVDC-JX-002_2020 6 n N/A +Sample5 Zhejiang_WZ-01_2020 6 n N/A +Sample5 Japan_KY-V-029_2020 6 n N/A +Sample5 Hangzhou_ZJU-03_2020 6 n N/A +Sample5 Netherlands_Utrecht_12_2020 6 n N/A +Sample5 Singapore_1_2020 6 n N/A +Sample5 Taiwan_NTU02_2020 6 n N/A +Sample5 England_SHEF-BFD36_2020 6 n N/A +Sample5 France_IDF0626_2020 6 n N/A +Sample5 Malaysia_MKAK-CL-2020-7554_2020 6 n N/A +Sample5 Cambodia_0012_2020 6 n N/A +Sample5 17 6 n N/A +Sample5 USA_CA-CDPH-UC2_2020 7 n N/A +Sample5 USA_CA-CDPH-UC3_2020 7 n N/A +Sample5 node_3_condensed_2_leaves 7 n N/A +Sample5 18 6 n N/A +Sample5 node_4_condensed_2_leaves 7 n N/A +Sample5 19 3 y G14948A,A23013G,A27669G +Sample5 Germany_NRW-10_2020 4 n N/A +Sample5 Germany_NRW-09_2020 4 n N/A +Sample5 Poland_PL_P1_2020 4 n N/A +Sample5 20 4 n N/A +Sample5 Germany_NRW-04_2020 6 n N/A +Sample5 Germany_NRW-07_2020 6 n N/A +Sample5 21 6 n N/A +Sample5 node_27_condensed_3_leaves 8 n N/A +Sample5 node_5_condensed_5_leaves 4 n N/A +Sample5 22 6 n N/A +Sample5 Malaysia_MKAK-CL-2020-5045_2020 7 n N/A +Sample5 node_6_condensed_3_leaves 7 n N/A +Sample5 23 6 n N/A +Sample5 Jiangsu_JS01_2020 7 n N/A +Sample5 Shanghai_SH0031_2020 7 n N/A +Sample5 24 6 n N/A +Sample5 Australia_NSW02_2020 7 n N/A +Sample5 25 7 n N/A +Sample5 Hangzhou_ZJU-06_2020 8 n N/A +Sample5 26 8 n N/A +Sample5 Shanghai_SH0085_2020 10 n N/A +Sample5 Shanghai_SH0094_2020 10 n N/A +Sample5 27 6 n N/A +Sample5 India_1-27_2020 7 n N/A +Sample5 Shanghai_SH0011_2020 7 n N/A +Sample5 Fujian_13_2020 7 n N/A +Sample5 Singapore_11_2020 7 n N/A +Sample5 USA_WI1_2020 7 n N/A +Sample5 28 6 n N/A +Sample5 Wuhan_HBCDC-HB-05_2020 10 n N/A +Sample5 Shandong_IVDC-SD-001_2020 10 n N/A +Sample5 England_200960041_2020 10 n N/A +Sample5 Australia_NSW05_2020 10 n N/A +Sample5 29 10 n N/A +Sample5 Georgia_Tb-82_2020 12 n N/A +Sample5 Australia_NSW09_2020 12 n N/A +Sample5 30 12 n N/A +Sample5 Canada_BC_25211_2020 13 n N/A +Sample5 Kuwait_KU09_2020 13 n N/A +Sample5 Kuwait_KU18_2020 12 n N/A +Sample5 Kuwait_KU12_2020 12 n N/A +Sample5 Australia_NSW06_2020 12 n N/A +Sample5 31 10 n N/A +Sample5 node_19_condensed_2_leaves 12 n N/A +Sample5 32 10 n N/A +Sample5 Taiwan_CGMH-CGU-04_2020 13 n N/A +Sample5 node_20_condensed_2_leaves 13 n N/A +Sample5 Kuwait_KU17_2020 10 n N/A +Sample5 33 10 n N/A +Sample5 Canada_BC_17397_2020 11 n N/A +Sample5 Canada_BC_13297_2020 11 n N/A +Sample5 34 10 n N/A +Sample5 Australia_QLD09_2020 11 n N/A +Sample5 Australia_NSW07_2020 11 n N/A +Sample5 35 10 n N/A +Sample5 USA_NY1-PV08001_2020 11 n N/A +Sample5 Canada_BC_37_0-2_2020 11 n N/A +Sample5 Canada_BC_69243_2020 11 n N/A +Sample5 36 11 n N/A +Sample5 England_200990002_2020 13 n N/A +Sample5 Germany_BavPat2_2020 13 n N/A +Sample5 37 6 n N/A +Sample5 node_7_condensed_3_leaves 8 n N/A +Sample5 38 6 n N/A +Sample5 Jiangsu_JS02_2020 7 n N/A +Sample5 Shanghai_SH0008_2020 7 n N/A +Sample5 USA_CA5_2020 7 n N/A +Sample5 39 6 n N/A +Sample5 Wuhan_WIV02_2019 7 n N/A +Sample5 node_8_condensed_2_leaves 7 n N/A +Sample5 40 6 n N/A +Sample5 node_9_condensed_2_leaves 7 n N/A +Sample5 41 6 n N/A +Sample5 Japan_Hu_DP_Kng_19-027_2020 7 n N/A +Sample5 node_10_condensed_3_leaves 7 n N/A +Sample5 42 6 n N/A +Sample5 Hangzhou_ZJU-09_2020 7 n N/A +Sample5 Australia_VIC01_2020 7 n N/A +Sample5 43 6 n N/A +Sample5 USA_MA1_2020 7 n N/A +Sample5 44 7 n N/A +Sample5 Shanghai_SH0058_2020 8 n N/A +Sample5 45 8 n N/A +Sample5 node_28_condensed_2_leaves 9 n N/A +Sample5 node_21_condensed_2_leaves 8 n N/A +Sample5 46 6 n N/A +Sample5 47 8 n N/A +Sample5 France_B2334_2020 10 n N/A +Sample5 France_B2340_2020 10 n N/A +Sample5 48 8 n N/A +Sample5 Georgia_Tb-468_2020 9 n N/A +Sample5 Georgia_Tb-537_2020 9 n N/A +Sample5 Georgia_Tb-54_2020 9 n N/A +Sample5 Italy_SPL1_2020 8 n N/A +Sample5 49 6 n N/A +Sample5 England_20102000106_2020 9 n N/A +Sample5 50 9 n N/A +Sample5 England_09c_2020 11 n N/A +Sample5 Brazil_ES-225_2020 11 n N/A +Sample5 England_20100001406_2020 11 n N/A +Sample5 51 11 n N/A +Sample5 node_29_condensed_3_leaves 12 n N/A +Sample5 52 9 n N/A +Sample5 Brazil_SPBR-10_2020 8 n N/A +Sample5 Switzerland_1000477102_2020 10 n N/A +Sample5 Brazil_SPBR-02_2020 10 n N/A +Sample5 England_200990006_2020 10 n N/A +Sample5 Netherlands_Utrecht_18_2020 10 n N/A +Sample5 England_200960515_2020 9 n N/A +Sample5 53 9 n N/A +Sample5 node_22_condensed_3_leaves 10 n N/A +Sample5 54 6 n N/A +Sample5 Netherlands_Utrecht_19_2020 7 n N/A +Sample5 Netherlands_Limburg_6_2020 7 n N/A +Sample5 Netherlands_Naarden_1364774_2020 7 n N/A +Sample5 55 7 n N/A +Sample5 node_23_condensed_2_leaves 8 n N/A +Sample5 56 7 n N/A +Sample5 Netherlands_Oss_1363500_2020 8 n N/A +Sample5 Netherlands_Tilburg_1363354_2020 8 n N/A +Sample5 57 6 n N/A +Sample5 Singapore_8_2020 7 n N/A +Sample5 58 7 n N/A +Sample5 node_24_condensed_3_leaves 8 n N/A +Sample5 59 6 n N/A +Sample5 Shanghai_SH0086_2020 9 n N/A +Sample5 60 9 n N/A +Sample5 Finland_FIN-25_2020 10 n N/A +Sample5 Belgium_DB-03023_2020 10 n N/A +Sample5 Denmark_SSI-102_2020 10 n N/A +Sample5 Denmark_SSI-02_2020 10 n N/A +Sample5 Belgium_BM-03012_2020 10 n N/A +Sample5 England_20100022706_2020 10 n N/A +Sample5 Denmark_SSI-04_2020 10 n N/A +Sample5 Taiwan_NTU03_2020 10 n N/A +Sample5 Finland_FIN03032020A_2020 10 n N/A +Sample5 Switzerland_GE4984_2020 10 n N/A +Sample5 Switzerland_AG0361_2020 10 n N/A +Sample5 Finland_FIN-266_2020 10 n N/A +Sample5 Luxembourg_Lux1_2020 10 n N/A +Sample5 Japan_SMU-0311S3_2020 10 n N/A +Sample5 Denmark_SSI-03_2020 10 n N/A +Sample5 Netherlands_Gelderland_2_2020 10 n N/A +Sample5 Georgia_Tb-273_2020 10 n N/A +Sample5 Belgium_SH-03014_2020 10 n N/A +Sample5 61 10 n N/A +Sample5 62 11 n N/A +Sample5 node_38_condensed_2_leaves 13 n N/A +Sample5 node_30_condensed_4_leaves 11 n N/A +Sample5 63 10 n N/A +Sample5 France_HF2174_2020 12 n N/A +Sample5 France_GE1977_2020 12 n N/A +Sample5 France_HF1684_2020 12 n N/A +Sample5 64 12 n N/A +Sample5 node_39_condensed_2_leaves 13 n N/A +Sample5 Belgium_VAG-03013_2020 10 n N/A +Sample5 65 10 n N/A +Sample5 Netherlands_Utrecht_1363564_2020 14 n N/A +Sample5 node_31_condensed_2_leaves 14 n N/A +Sample5 66 10 n N/A +Sample5 England_20099107406_2020 11 n N/A +Sample5 Georgia_Tb_2020 11 n N/A +Sample5 67 10 n N/A +Sample5 France_BFC2094_2020 11 n N/A +Sample5 France_BFC2147_2020 11 n N/A +Sample5 node_32_condensed_4_leaves 11 n N/A +Sample5 68 10 n N/A +Sample5 Hungary_mbl1_2020 11 n N/A +Sample5 node_33_condensed_5_leaves 11 n N/A +Sample5 69 10 n N/A +Sample5 Nigeria_Lagos01_2020 13 n N/A +Sample5 Netherlands_Delft_1363424_2020 13 n N/A +Sample5 Denmark_SSI-01_2020 13 n N/A +Sample5 England_200990723_2020 13 n N/A +Sample5 Switzerland_TI2045_2020 13 n N/A +Sample5 Switzerland_1000477377_2020 13 n N/A +Sample5 Denmark_SSI-05_2020 13 n N/A +Sample5 Chile_Santiago-2_2020 13 n N/A +Sample5 Brazil_SPBR-14_2020 13 n N/A +Sample5 Finland_FIN-318_2020 13 n N/A +Sample5 Netherlands_Limburg_5_2020 13 n N/A +Sample5 Belgium_DBA-03032_2020 13 n N/A +Sample5 Switzerland_SZ1417_2020 13 n N/A +Sample5 Belgium_GMH-03022_2020 13 n N/A +Sample5 Netherlands_Utrecht_14_2020 13 n N/A +Sample5 Netherlands_Utrecht_1_2020 13 n N/A +Sample5 Finland_FIN03032020C_2020 13 n N/A +Sample5 Netherlands_Berlicum_1363564_2020 13 n N/A +Sample5 70 13 n N/A +Sample5 node_40_condensed_2_leaves 15 n N/A +Sample5 71 13 n N/A +Sample5 node_41_condensed_2_leaves 14 n N/A +Sample5 72 13 n N/A +Sample5 node_42_condensed_2_leaves 14 n N/A +Sample5 73 13 n N/A +Sample5 Switzerland_1000477797_2020 14 n N/A +Sample5 Brazil_BA-312_2020 14 n N/A +Sample5 node_43_condensed_3_leaves 14 n N/A +Sample5 74 13 n N/A +Sample5 Finland_FIN-313_2020 15 n N/A +Sample5 Netherlands_Utrecht_15_2020 15 n N/A +Sample5 75 13 n N/A +Sample5 Switzerland_GE1422_2020 14 n N/A +Sample5 Netherlands_Diemen_1363454_2020 14 n N/A +Sample5 node_44_condensed_3_leaves 14 n N/A +Sample5 76 13 n N/A +Sample5 Switzerland_BE6651_2020 14 n N/A +Sample5 Netherlands_NoordHolland_2_2020 14 n N/A +Sample5 node_45_condensed_6_leaves 14 n N/A +Sample5 Belgium_BC-03016_2020 13 n N/A +Sample5 77 13 n N/A +Sample5 Switzerland_1000477757_2020 14 n N/A +Sample5 Brazil_SPBR-12_2020 14 n N/A +Sample5 Germany_Baden-Wuerttemberg-1_2020 14 n N/A +Sample5 78 13 n N/A +Sample5 node_46_condensed_16_leaves 14 n N/A +Sample5 79 13 n N/A +Sample5 Belgium_UMF-03025_2020 14 n N/A +Sample5 80 14 n N/A +Sample5 node_47_condensed_2_leaves 15 n N/A +Sample5 node_34_condensed_7_leaves 13 n N/A +Sample5 81 10 n N/A +Sample5 Netherlands_NoordHolland_3_2020 11 n N/A +Sample5 Netherlands_Flevoland_1_2020 11 n N/A +Sample5 82 10 n N/A +Sample5 NetherlandsL_Houten_1363498_2020 11 n N/A +Sample5 Italy_UniSR1_2020 11 n N/A +Sample5 France_N1620_2020 11 n N/A +Sample5 node_35_condensed_3_leaves 11 n N/A +Sample5 83 10 n N/A +Sample5 Georgia_Tb-673_2020 12 n N/A +Sample5 France_B2330_2020 12 n N/A +Sample5 France_PL1643_2020 12 n N/A +Sample5 France_HF1988_2020 12 n N/A +Sample5 France_B2348_2020 12 n N/A +Sample5 84 12 n N/A +Sample5 France_B2351_2020 13 n N/A +Sample5 France_B2344_2020 13 n N/A +Sample5 France_B2349_2020 13 n N/A +Sample5 85 12 n N/A +Sample5 France_IDF2256_2020 13 n N/A +Sample5 France_HF1871_2020 13 n N/A +Sample5 Netherlands_Haarlem_1363688_2020 12 n N/A +Sample5 node_36_condensed_6_leaves 12 n N/A +Sample5 node_25_condensed_15_leaves 10 n N/A +Sample5 node_11_condensed_3_leaves 9 n N/A +Sample5 node_1_condensed_27_leaves 6 n N/A
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_06_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,node_14_condensed_6_leaves:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)7:1,(node_16_condensed_2_leaves:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(node_37_condensed_2_leaves:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)16:2,node_2_condensed_10_leaves:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)17:1,(node_4_condensed_2_leaves:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)21:2)20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(node_19_condensed_2_leaves:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(node_7_condensed_3_leaves:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)39:1,(node_9_condensed_2_leaves:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)45:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)62:2,node_30_condensed_4_leaves:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)67:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)70:2,(node_41_condensed_2_leaves:0)71:1,(node_42_condensed_2_leaves:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(node_46_condensed_16_leaves:0)78:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)80:1)79:1,node_34_condensed_7_leaves:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)83:2,node_25_condensed_15_leaves:0)60:1,node_11_condensed_3_leaves:0)59:3,node_1_condensed_27_leaves:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_06_mutation_paths.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 86:A27669G +Sample2 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G +Sample5 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_07_single_subtree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:3,(Japan_SMU-0311S3_2020:1,France_BFC2147_2020:2)60:4)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_07_single_subtree_mutations.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,12 @@ +1: +86: G1440A,G2891A,A27669G +Sample1: +87: G14948A +Sample3: +Sample2: +88: A23013G +Sample5: +Sample4: +60: C241T,C3037T,C14408T,A23403G +Japan_SMU-0311S3_2020: C29743T +France_BFC2147_2020: C13051T,C15324T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_08_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,node_14_condensed_6_leaves:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)7:1,(node_16_condensed_2_leaves:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(node_37_condensed_2_leaves:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)16:2,node_2_condensed_10_leaves:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)17:1,(node_4_condensed_2_leaves:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)21:2)20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(node_19_condensed_2_leaves:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(node_7_condensed_3_leaves:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)39:1,(node_9_condensed_2_leaves:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)45:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)62:2,node_30_condensed_4_leaves:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)67:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)70:2,(node_41_condensed_2_leaves:0)71:1,(node_42_condensed_2_leaves:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(node_46_condensed_16_leaves:0)78:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)80:1)79:1,node_34_condensed_7_leaves:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)83:2,node_25_condensed_15_leaves:0)60:1,node_11_condensed_3_leaves:0)59:3,node_1_condensed_27_leaves:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_08_mutation_path.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 86:A27669G +Sample2 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G +Sample5 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_09_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,node_14_condensed_6_leaves:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)7:1,(node_16_condensed_2_leaves:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(node_37_condensed_2_leaves:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)16:2,node_2_condensed_10_leaves:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)17:1,(node_4_condensed_2_leaves:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)21:2)20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)88:1)87:1)86:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(node_19_condensed_2_leaves:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(node_7_condensed_3_leaves:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)39:1,(node_9_condensed_2_leaves:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)45:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)62:2,node_30_condensed_4_leaves:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)67:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)70:2,(node_41_condensed_2_leaves:0)71:1,(node_42_condensed_2_leaves:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(node_46_condensed_16_leaves:0)78:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)80:1)79:1,node_34_condensed_7_leaves:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)83:2,node_25_condensed_15_leaves:0)60:1,node_11_condensed_3_leaves:0)59:3,node_1_condensed_27_leaves:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_09_mutation_path.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 86:A27669G +Sample2 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G +Sample5 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_10_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,node_14_condensed_6_leaves:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)7:1,(node_16_condensed_2_leaves:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(node_37_condensed_2_leaves:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)16:2,node_2_condensed_10_leaves:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)17:1,(node_4_condensed_2_leaves:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)21:2)20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,(Sample4:0,Sample5:0)86:1,Sample2:0)87:1)88:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(node_19_condensed_2_leaves:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(node_7_condensed_3_leaves:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)39:1,(node_9_condensed_2_leaves:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)45:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)62:2,node_30_condensed_4_leaves:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)67:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)70:2,(node_41_condensed_2_leaves:0)71:1,(node_42_condensed_2_leaves:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(node_46_condensed_16_leaves:0)78:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)80:1)79:1,node_34_condensed_7_leaves:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)83:2,node_25_condensed_15_leaves:0)60:1,node_11_condensed_3_leaves:0)59:3,node_1_condensed_27_leaves:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_10_mutation_path.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 88:A27669G +Sample2 19:G1440A,G2891A 88:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 88:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 88:A27669G 87:G14948A 86:A23013G +Sample5 19:G1440A,G2891A 88:A27669G 87:G14948A 86:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_11_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)6:1,node_14_condensed_6_leaves:0)5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)7:1,(node_16_condensed_2_leaves:0)8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)11:3,(node_37_condensed_2_leaves:0)12:2)10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)16:2,node_2_condensed_10_leaves:0)2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)17:1,(node_4_condensed_2_leaves:0)18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)21:2)20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,(Sample4:0,Sample5:0)86:1,Sample2:0)87:1)88:1)19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)26:2)25:1)24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)29:2,(node_19_condensed_2_leaves:0)31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)36:2)35:1)28:4,(node_7_condensed_3_leaves:0)37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)39:1,(node_9_condensed_2_leaves:0)40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)41:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)42:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)45:1,node_21_condensed_2_leaves:0)44:1)43:1,((France_B2334_2020:1,France_B2340_2020:1)47:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)48:1,Italy_SPL1_2020:0)46:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)51:1)50:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)52:1,England_200960515_2020:1,(node_22_condensed_3_leaves:0)53:1)49:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_23_condensed_2_leaves:0)55:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)56:1)54:1,(Singapore_8_2020:1,(node_24_condensed_3_leaves:0)58:1)57:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)62:2,node_30_condensed_4_leaves:0)61:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)64:1)63:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)65:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)66:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)67:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)68:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)70:2,(node_41_condensed_2_leaves:0)71:1,(node_42_condensed_2_leaves:0)72:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)73:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)74:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)75:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)76:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)77:1,(node_46_condensed_16_leaves:0)78:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)80:1)79:1,node_34_condensed_7_leaves:0)69:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)81:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)82:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)84:1,(France_IDF2256_2020:1,France_HF1871_2020:2)85:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)83:2,node_25_condensed_15_leaves:0)60:1,node_11_condensed_3_leaves:0)59:3,node_1_condensed_27_leaves:0)1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_11_mutation_path.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 88:A27669G +Sample2 19:G1440A,G2891A 88:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 88:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 88:A27669G 87:G14948A 86:A23013G +Sample5 19:G1440A,G2891A 88:A27669G 87:G14948A 86:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_12_final_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020,Wuhan_HBCDC-HB-02_2020,Wuhan_HBCDC-HB-04_2020,Shanghai_SH0075_2020,Shanghai_SH0010_2020,Tianmen_HBCDC-HB-07_2020,Shanghai_SH0041_2020,India_1-31_2020,Shanghai_SH0009_2020,Malaysia_MKAK-CL-2020-5096_2020,(France_GE1583_2020,Georgia_Tb-390_2020,Spain_Valencia6_2020,Spain_CastillayLeon201437_2020,node_12_condensed_6_leaves)3,(Sichuan_IVDC-SC-001_2020,USA_CA1_2020,USA_IL2_2020,Vietnam_CM99_2020,node_13_condensed_3_leaves)4,(Shanghai_SH0035_2020,Australia_QLD02_2020,Australia_QLD03_2020,Australia_VIC07_2020,(Netherlands_Utrecht_16_2020,Netherlands_Utrecht_17_2020)6,node_14_condensed_6_leaves)5,(Shandong_LY003_2020,Shandong_LY005_2020,node_15_condensed_3_leaves)7,(node_16_condensed_2_leaves)8,England_02_2020,(Chongqing_YC01_2020,((USA_CA-CDPH-UC7_2020,USA_CA-CDPH-UC9_2020)11,(node_37_condensed_2_leaves)12)10,Malaysia_MKAK-CL-2020-6430_2020,node_17_condensed_3_leaves)9,(Shanghai_SH0059_2020,USA_TX1_2020,(Japan_TY-WK-012_2020,node_26_condensed_2_leaves)14,Shanghai_SH0004_2020,Germany_BavPat3_2020,Shanghai_SH0005_2020)13,(Yunnan_IVDC-YN-003_2020,USA_AZ1_2020,Anhui_SZ005_2020)15,(Beijing_233_2020,node_18_condensed_3_leaves)16,node_2_condensed_10_leaves)2,Shanghai_SH0007_2020,Hangzhou_ZJU-07_2020,Wuhan_IPBCAMS-WH-03_2019,Wuhan_WH01_2019,Wuhan_WIV07_2019,Shanghai_SH0093_2020,Wuhan_HBCDC-HB-01_2019,Wuhan_IPBCAMS-WH-01_2019,Wuhan_IVDC-HB-04_2020,Wuhan_IVDC-HB-05_2019,Wuhan_WIV05_2019,Sweden_01_2020,Taiwan_2_2020,USA_CA2_2020,Shanghai_SH0040_2020,Singapore_7_2020,Australia_VIC02_2020,France_IDF0515_2020,Hangzhou_ZJU-01_2020,Shanghai_SH0037_2020,Nepal_61_2020,China_WH-09_2020,Jiangxi_IVDC-JX-002_2020,Zhejiang_WZ-01_2020,Japan_KY-V-029_2020,Hangzhou_ZJU-03_2020,Netherlands_Utrecht_12_2020,Singapore_1_2020,Taiwan_NTU02_2020,England_SHEF-BFD36_2020,France_IDF0626_2020,Malaysia_MKAK-CL-2020-7554_2020,Cambodia_0012_2020,(USA_CA-CDPH-UC2_2020,USA_CA-CDPH-UC3_2020,node_3_condensed_2_leaves)17,(node_4_condensed_2_leaves)18,(Germany_NRW-10_2020,Germany_NRW-09_2020,Poland_PL_P1_2020,(Germany_NRW-04_2020,Germany_NRW-07_2020,(node_27_condensed_3_leaves)21)20,node_5_condensed_5_leaves,(Sample1,(Sample3,Sample2,(Sample5,Sample4)88)87)86)19,(Malaysia_MKAK-CL-2020-5045_2020,node_6_condensed_3_leaves)22,(Jiangsu_JS01_2020,Shanghai_SH0031_2020)23,(Australia_NSW02_2020,(Hangzhou_ZJU-06_2020,(Shanghai_SH0085_2020,Shanghai_SH0094_2020)26)25)24,(India_1-27_2020,Shanghai_SH0011_2020,Fujian_13_2020,Singapore_11_2020,USA_WI1_2020)27,(Wuhan_HBCDC-HB-05_2020,Shandong_IVDC-SD-001_2020,England_200960041_2020,Australia_NSW05_2020,(Georgia_Tb-82_2020,Australia_NSW09_2020,(Canada_BC_25211_2020,Kuwait_KU09_2020)30,Kuwait_KU18_2020,Kuwait_KU12_2020,Australia_NSW06_2020)29,(node_19_condensed_2_leaves)31,(Taiwan_CGMH-CGU-04_2020,node_20_condensed_2_leaves)32,Kuwait_KU17_2020,(Canada_BC_17397_2020,Canada_BC_13297_2020)33,(Australia_QLD09_2020,Australia_NSW07_2020)34,(USA_NY1-PV08001_2020,Canada_BC_37_0-2_2020,Canada_BC_69243_2020,(England_200990002_2020,Germany_BavPat2_2020)36)35)28,(node_7_condensed_3_leaves)37,(Jiangsu_JS02_2020,Shanghai_SH0008_2020,USA_CA5_2020)38,(Wuhan_WIV02_2019,node_8_condensed_2_leaves)39,(node_9_condensed_2_leaves)40,(Japan_Hu_DP_Kng_19-027_2020,node_10_condensed_3_leaves)41,(Hangzhou_ZJU-09_2020,Australia_VIC01_2020)42,(USA_MA1_2020,(Shanghai_SH0058_2020,(node_28_condensed_2_leaves)45,node_21_condensed_2_leaves)44)43,((France_B2334_2020,France_B2340_2020)47,(Georgia_Tb-468_2020,Georgia_Tb-537_2020,Georgia_Tb-54_2020)48,Italy_SPL1_2020)46,(England_20102000106_2020,(England_09c_2020,Brazil_ES-225_2020,England_20100001406_2020,(node_29_condensed_3_leaves)51)50,(Brazil_SPBR-10_2020,Switzerland_1000477102_2020,Brazil_SPBR-02_2020,England_200990006_2020,Netherlands_Utrecht_18_2020)52,England_200960515_2020,(node_22_condensed_3_leaves)53)49,(Netherlands_Utrecht_19_2020,Netherlands_Limburg_6_2020,Netherlands_Naarden_1364774_2020,(node_23_condensed_2_leaves)55,(Netherlands_Oss_1363500_2020,Netherlands_Tilburg_1363354_2020)56)54,(Singapore_8_2020,(node_24_condensed_3_leaves)58)57,(Shanghai_SH0086_2020,(Finland_FIN-25_2020,Belgium_DB-03023_2020,Denmark_SSI-102_2020,Denmark_SSI-02_2020,Belgium_BM-03012_2020,England_20100022706_2020,Denmark_SSI-04_2020,Taiwan_NTU03_2020,Finland_FIN03032020A_2020,Switzerland_GE4984_2020,Switzerland_AG0361_2020,Finland_FIN-266_2020,Luxembourg_Lux1_2020,Japan_SMU-0311S3_2020,Denmark_SSI-03_2020,Netherlands_Gelderland_2_2020,Georgia_Tb-273_2020,Belgium_SH-03014_2020,((node_38_condensed_2_leaves)62,node_30_condensed_4_leaves)61,(France_HF2174_2020,France_GE1977_2020,France_HF1684_2020,(node_39_condensed_2_leaves)64)63,Belgium_VAG-03013_2020,(Netherlands_Utrecht_1363564_2020,node_31_condensed_2_leaves)65,(England_20099107406_2020,Georgia_Tb_2020)66,(France_BFC2094_2020,France_BFC2147_2020,node_32_condensed_4_leaves)67,(Hungary_mbl1_2020,node_33_condensed_5_leaves)68,(Nigeria_Lagos01_2020,Netherlands_Delft_1363424_2020,Denmark_SSI-01_2020,England_200990723_2020,Switzerland_TI2045_2020,Switzerland_1000477377_2020,Denmark_SSI-05_2020,Chile_Santiago-2_2020,Brazil_SPBR-14_2020,Finland_FIN-318_2020,Netherlands_Limburg_5_2020,Belgium_DBA-03032_2020,Switzerland_SZ1417_2020,Belgium_GMH-03022_2020,Netherlands_Utrecht_14_2020,Netherlands_Utrecht_1_2020,Finland_FIN03032020C_2020,Netherlands_Berlicum_1363564_2020,(node_40_condensed_2_leaves)70,(node_41_condensed_2_leaves)71,(node_42_condensed_2_leaves)72,(Switzerland_1000477797_2020,Brazil_BA-312_2020,node_43_condensed_3_leaves)73,(Finland_FIN-313_2020,Netherlands_Utrecht_15_2020)74,(Switzerland_GE1422_2020,Netherlands_Diemen_1363454_2020,node_44_condensed_3_leaves)75,(Switzerland_BE6651_2020,Netherlands_NoordHolland_2_2020,node_45_condensed_6_leaves)76,Belgium_BC-03016_2020,(Switzerland_1000477757_2020,Brazil_SPBR-12_2020,Germany_Baden-Wuerttemberg-1_2020)77,(node_46_condensed_16_leaves)78,(Belgium_UMF-03025_2020,(node_47_condensed_2_leaves)80)79,node_34_condensed_7_leaves)69,(Netherlands_NoordHolland_3_2020,Netherlands_Flevoland_1_2020)81,(NetherlandsL_Houten_1363498_2020,Italy_UniSR1_2020,France_N1620_2020,node_35_condensed_3_leaves)82,(Georgia_Tb-673_2020,France_B2330_2020,France_PL1643_2020,France_HF1988_2020,France_B2348_2020,(France_B2351_2020,France_B2344_2020,France_B2349_2020)84,(France_IDF2256_2020,France_HF1871_2020)85,Netherlands_Haarlem_1363688_2020,node_36_condensed_6_leaves)83,node_25_condensed_15_leaves)60,node_11_condensed_3_leaves)59,node_1_condensed_27_leaves)1; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_12_mutation_path.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Sample1 19:G1440A,G2891A 86:A27669G +Sample2 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample3 19:G1440A,G2891A 86:A27669G 87:G14948A +Sample4 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G +Sample5 19:G1440A,G2891A 86:A27669G 87:G14948A 88:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_13_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,90 @@ +clade root_id from_tree_root +20A 28 C241T,C3037T,C14408T,A23403G +B.1.108 28 C241T,C3037T,C14408T,A23403G +B.1.350 53 C241T,C3037T,C14408T,A23403G > G25563T +20C 61 C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.371 61 C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.440 212 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T +B.1.221 268 C241T,C3037T,C14408T,A23403G > > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.505 99 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C66A,C4455T,C7768T,A8773G,C11916T,C17304T,C18998T,T24805C,C26270T,G29540A +B.1.465 216 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > T241C,A8821G,C15752T,G24197T,T26066C +B.1.182 318 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C +B.1.221.1 269 C241T,C3037T,C14408T,A23403G > > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 271 C241T,C3037T,C14408T,A23403G > > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +20G 109 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T +B.1.2 109 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T +B.1.523 217 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +20E.EU1 361 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.177.14 361 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.258 319 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A +B.1.427 136 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T > G9738C,G13713A,C16394T +B.1.429 138 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T > C2395T,T2597C,C8947T,C12100T,A12878G,T24349C,G27890T +B.1.36 223 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T +B.1.160 238 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +20B 427 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C +B.1.1.119 427 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C +B.1.1.77 655 C241T,C3037T,C14408T,A23403G > > > > > T19839C,G28881A,G28882A,G28883C +B.1.177.11 365 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.258.16 321 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > C4893T,C7844T,T24925C,C27920T,C29762T +B.1.258.2 336 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 338 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G18803T +B.1.1.4 429 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > T19839C +B.1.177 366 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T +G.1 337 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +B.1.36.1 225 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +20A.EU2 240 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.316 438 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T25713C,T26604C,C27213T,C28833T,G29527T +R.2 443 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > T19839C > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T +20D 500 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T +C.6 500 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T +B.1.1.224 656 C241T,C3037T,C14408T,A23403G > > > > > T19839C,G28881A,G28882A,G28883C > > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.177.23 381 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.258.6 324 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 325 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.36.17 227 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > T1947C > > C7528T,C29555T +B.1.36.27 228 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > T1947C > > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.23 232 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.24 235 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.21 230 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 231 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +B.1.1.294 515 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > G1820A,C3373A,C6883T,G21724A,G28003C +C.16 506 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 507 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +B.1.258.10 327 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C20451T,G21770A > T7919G +B.1.258.12 328 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C20451T,G21770A > G18583A +B.1.258.17 333 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.160.7 242 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.1.114 521 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > C313T +B.1.177.16 385 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > C28310A +B.1.177.17 383 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > A408G > C22088T,C29686T +B.1.177.13 384 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > A408G > G27877T +B.1.258.4 331 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 332 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C +B.1.1.227 558 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.303 528 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.214 Japan/TKYE622411_2020/2020|LC593808.1|20-07 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > C313T > C8917T,C18167T,G21518T,G28975T,G29773T +M.1 517 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > G1820A,C3373A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.177.26 375 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.21 368 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > T16242A +B.1.177.22 369 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T +B.1.1.198 563 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.177.15 393 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.177.19 387 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > G23311C > T29185A +B.1.177.25 380 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.146 573 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > C7843T,G15438T,C25207T,G26918T,C28453T,T29464C +B.1.177.10 391 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > > G22346T > G28321A +B.1.177.9 392 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > > G22346T > G21800T,A22053C +B.1.177.20 388 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > G23311C > > C10626T +B.1.177.18 389 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > G23311C > > G25440T,C27752T +B.1.177.2 377 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1987G > T14721C,T25519G +B.1.177.6 370 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > C6317T +20I/501Y.V1 618 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 618 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.177.3 378 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1987G > > G6344T +B.1.177.4 379 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1987G > > C66T,G10870T,A11781G,C25614T +B.1.177.12 371 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > G17944T,C24334T,T24814C,C27769T +B.1.1.219 626 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > > G5572A,A6366T,G11410A,C19488T,G25776T +B.1.1.315 631 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.177.5 372 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > > T24769C,C25460T +B.1.177.7 373 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > > > C15480T +B.1.177.8 374 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > > > G8179T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_13_path_mutations.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,139 @@ +sample_id path_from_root +England/MILK-9A8AB8/2020|20-08-31 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > C222T +England/CAMC-106415F/2021|21-01-15 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T (271) > C12116T,C12459T,A23503T,A23989T,C24023T,G28899A +England/CAMC-C470F2/2020|20-12-10 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T (271) > C6794T,C8814T,C13452T +Spain/R60/2020|LR884131.1|20-04-17 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > T19839C,G28881A,G28882A,G28883C (655) > G3849A,G27506T,C29203T +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > T19839C,G28881A,G28882A,G28883C (655) > (655_polytomy_0) > A14424G,G18880T,C28057T,C29774T +England/QEUH-9C7EA8/2020|20-09-11 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > G2407T,T2924C,G11761T +Scotland/QEUH-9D11C0/2020|20-09-16 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T (365) > C24334T +England/QEUH-A0077A/2020|20-10-02 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T (365) > C6027T,T10977C,A25327G +England/ALDP-AA0ED1/2020|20-10-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > C445T,G28079T +England/QEUH-A4CF6B/2020|20-10-05 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > C4534T,C5544T +Switzerland/270068/2020|LR882987.1|20-09-02 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T (381) > G17058T +Switzerland/332169/2020|LR898966.1|20-10-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T (381) > G21830T,C27881T +England/MILK-ABB8D5/2020|20-10-21 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > C28310A (385) > C9857A,A28304T +England/NORT-2884A8/2020|20-11-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > C28310A (385) > C6525T,C10376T,G17032A,C23557T,C24106T +England/QEUH-AD0DDB/2020|20-10-26 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > (361_polytomy_5) > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T (393) > G14187A,A25948T,C29274T +Wales/MILK-9E3240/2020|20-09-21 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > (361_polytomy_5) > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T (393) > A9409G,T29604C +England/CAMC-949688/2020|20-07-27 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T (558) > T3694C,G20580T +England/SHEF-C3AED/2020|20-07-30 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T (558) > C401T,T1438C +England/MILK-99D755/2020|20-08-31 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T (563) > T4303C,C25553T,G25599T +England/MILK-99D764/2020|20-08-31 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T (563) > G20125A,G22484T +Wales/PHWC-48212D/2020|20-10-20 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > (427_polytomy_7) > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G (631) > G22381T,C26029A +England/QEUH-9C80B0/2020|20-09-10 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > (427_polytomy_7) > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G (631) > G22471T,T22896C +England/MILK-A06194/2020|20-10-01 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > T19839C,G28881A,G28882A,G28883C (655) > (655_polytomy_0) > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T (656) > C12513T,T29059C +England/CAMC-B32AA2/2020|20-11-05 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > T19839C,G28881A,G28882A,G28883C (655) > (655_polytomy_0) > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T (656) > G14528A,C16393T,T16695G,C24023T +USA/AK-PHL660/2020|MW173157.1|20-06-27 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > (61_polytomy_0) > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T (109) > A16872C +England/LOND-DC4E3/2020|20-11-04 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T (217) > A11923G,G19009T,C20233T,T21976C,C26645T +England/MILK-99D3AC/2020|20-08-31 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T (217) > G6446T,C9811T,C21234A,C22713T,C29580T +England/PHEC-1491AD/2020|20-10-17 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G4006T,T18877C,T25563G +England/QEUH-9B3A8D/2020|20-09-04 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T (375) > T11152C,T11824C +England/NORW-F1F9C/2020|20-10-24 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T (375) > C203T,C5183T,A8031G,C9207T,C25521T,G26690T +England/PHEC-14E15D/2020|20-12-09 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > C20178T +England/PHEC-149635/2020|20-10-28 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > +England/ALDP-A95DE1/2020|20-10-20 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > A408G (382) > C22088T,C29686T (383) > G21193T,G24794T,G25135T,G26801C,T26843C +England/ALDP-9E75E9/2020|20-09-25 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > A408G (382) > C22088T,C29686T (383) > G2764T +England/MILK-AC7B0A/2020|20-10-21 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > A408G (382) > G27877T (384) > C7528T,G24098T,C28315T,G28939T +England/NOTT-11336A/2020|20-09-16 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > A408G (382) > G27877T (384) > G713A,A21127G,T26163C +England/MILK-A799FE/2020|20-10-15 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > G23311C (386) > T29185A (387) > A2658G,C17004T,C17125T +England/CAMC-A417F5/2020|20-10-06 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > G23311C (386) > T29185A (387) > T23062C,G27459T,G29755T +England/QEUH-AE2A48/2020|20-10-26 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > G23311C (386) > (386_polytomy_0) > C10626T (388) > C6114A,T17208C +England/ALDP-A68CF9/2020|20-10-12 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > G23311C (386) > (386_polytomy_0) > C10626T (388) > G6476T +England/CAMB-1B6439/2020|20-09-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > G23311C (386) > (386_polytomy_0) > G25440T,C27752T (389) > A10323G,C28310A +England/MILK-9F1898/2020|20-09-25 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > G23311C (386) > (386_polytomy_0) > G25440T,C27752T (389) > C5239T +England/MILK-A7CDC2/2020|20-10-13 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > (361_polytomy_5) > G22346T (390) > G28321A (391) > G10996T,G24867T +England/CAMC-A5845E/2020|20-10-08 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > (361_polytomy_5) > G22346T (390) > G28321A (391) > C13009T,G17721T,G18462T,C21234T,G23675C +England/ALDP-AA10DA/2020|20-10-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > (361_polytomy_5) > G22346T (390) > G21800T,A22053C (392) > T7549C,C9073T,G10870T +Wales/PHWC-4815AA/2020|20-10-13 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > (361_polytomy_1) > (361_polytomy_2) > (361_polytomy_3) > (361_polytomy_4) > (361_polytomy_5) > G22346T (390) > G21800T,A22053C (392) > C12049T +England/QEUH-962E81/2020|20-08-10 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > C313T (521) > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G (528) > G24755T,A27973G +England/QEUH-96E605/2020|20-08-17 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > C313T (521) > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G (528) > C2841T +Japan/TKYE622411_2020/2020|LC593808.1|20-07 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > C313T (521) > C8917T,C18167T,G21518T,G28975T,G29773T +England/CAMC-B36516/2020|20-11-05 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C2918T +England/CAMC-B362D3/2020|20-11-05 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C29311T +England/MILK-B3A284/2020|20-11-01 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > C27046T +England/CAMC-B365AD/2020|20-11-05 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > T19232C +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > (427_polytomy_7) > G5572A,A6366T,G11410A,C19488T,G25776T (626) > A4228G,A11410G,G23403A +Poland/1/2020|LR899030.1|20-05-20 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > (427_polytomy_6) > (427_polytomy_7) > G5572A,A6366T,G11410A,C19488T,G25776T (626) > T241C,T9440G,G17964T,T19488C,G29747T +England/MILK-6166F0/2020|20-07-05 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C66A,C4455T,C7768T,A8773G,C11916T,C17304T,C18998T,T24805C,C26270T,G29540A (99) > T22912G +England/ALDP-9BCA93/2020|20-09-09 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C66A,C4455T,C7768T,A8773G,C11916T,C17304T,C18998T,T24805C,C26270T,G29540A (99) > C782T,G1210T,C28045T +USA/WI-UW-1194/2020|MT981478.1|20-08-11 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > (61_polytomy_0) > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T (109) > G9928T (110) > C10377T +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > (61_polytomy_0) > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T (109) > G9928T (110) > A16148G,C16928T,G29422T +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > (61_polytomy_0) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T (135) > G9738C,G13713A,C16394T (136) > A9492C,C21638T,C25919T +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > (61_polytomy_0) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T (135) > G9738C,G13713A,C16394T (136) > C11345T,C13860T +England/SHEF-CDD62/2020|20-05-27 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > T241C,A8821G,C15752T,G24197T,T26066C (216) > C25665T,T28098C,G29254T +England/SHEF-10B22B9/2020|20-04-20 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > T241C,A8821G,C15752T,G24197T,T26066C (216) > G3482A +England/QEUH-9B703C/2020|20-09-09 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > (223_polytomy_1) > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C (232) > C25466A,C25614T,A29101G +England/MILK-970CE0/2020|20-08-18 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > (223_polytomy_1) > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C (232) > G26389T +England/SHEF-10C9BD2/2020|20-12-20 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > (223_polytomy_1) > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C (235) > C15081T,A19963G +England/SHEF-10CC3AA/2020|20-12-17 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > (223_polytomy_1) > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C (235) > C1420T +England/MILK-A1BC04/2020|20-10-03 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G204T,T961C,G6288T,T9651G,T13880C,C16163T,A22992G,C27263T,C28975G,A29399G +England/ALDP-9BE8B5/2020|20-09-09 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > T16242A (368) > G28745A +Scotland/EDB10724/2020|20-12-04 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > T16242A (368) > C2509T,C10615T,T12134C,C21365T,C22987T +Scotland/CVR4309/2020|20-09-14 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > C7471T +England/QEUH-AE4EA4/2020|20-10-27 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1987G (376) > T14721C,T25519G (377) > C26894T,T28277C,A28612G +England/ALDP-9BECB9/2020|20-09-10 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1987G (376) > T14721C,T25519G (377) > C23029T +Wales/PHWC-16E6A3/2020|20-10-02 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1987G (376) > (376_polytomy_0) > G6344T (378) > C3768T,C5031T,C18555T,T20976C +England/MILK-9A9D09/2020|20-09-01 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1987G (376) > (376_polytomy_0) > G6344T (378) > A1230G +England/QEUH-B6C0E9/2020|20-11-11 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1987G (376) > (376_polytomy_0) > C66T,G10870T,A11781G,C25614T (379) > C5730T,C14318T,C23644T,C29739T +England/CAMC-AEA62E/2020|20-10-25 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > (366_polytomy_2) > (366_polytomy_3) > A1987G (376) > (376_polytomy_0) > C66T,G10870T,A11781G,C25614T (379) > C18329T +England/MILK-11A5634/2021|21-01-29 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T25713C,T26604C,C27213T,C28833T,G29527T (438) > C683T,C11747T,G22022A,T24991A,T25039C +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T25713C,T26604C,C27213T,C28833T,G29527T (438) > C5796T,C9360T +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > T19839C (429) > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T (443) > C22264T +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > T19839C (429) > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T (443) > T27824C +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > C4002T,G10097A,C13536T,C23731T (500) > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T (506) > A235C,T1921C,C22522T,C29259T +England/LOND-12F65DC/2021|21-01-19 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > C4002T,G10097A,C13536T,C23731T (500) > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T (506) > G8591T,G15906T,A18594G,G23868T,G25906T,C26060T,G28079A,T28124C,T28723C,G29260T,G29543T +Switzerland/310500/2020|LR898805.1|20-10-08 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > C4002T,G10097A,C13536T,C23731T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C (507) > C9286T,G18210T,C21306T,G28541T +Switzerland/300433/2020|LR898634.1|20-09-29 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > C4002T,G10097A,C13536T,C23731T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C (507) > G27382T +England/MILK-9A699F/2020|20-09-01 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > G1820A,C3373A,C6883T,G21724A,G28003C (515) > C1457T,G3286A,C8290T,C8626T,C9298T,C24378T,G26648A,C28657T +England/CAMC-947392/2020|20-07-18 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > C7843T,G15438T,C25207T,G26918T,C28453T,T29464C (573) > T25949C +England/MILK-977469/2020|20-07-24 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > (427_polytomy_2) > (427_polytomy_3) > (427_polytomy_4) > (427_polytomy_5) > C7843T,G15438T,C25207T,G26918T,C28453T,T29464C (573) > C2536T,T7843C,C8318A,T26160C +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > (61_polytomy_0) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T (135) > C2395T,T2597C,C8947T,C12100T,A12878G,T24349C,G27890T (138) > C1380T,C6539T,T7813C,A10417G,A19476G,C21638T,G22708T,G28628T,T29362C +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > (61_polytomy_0) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T (135) > C2395T,T2597C,C8947T,C12100T,A12878G,T24349C,G27890T (138) > C1601T,C4918T +England/CAMC-A65DDB/2020|20-10-11 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T (225) > T22918G +England/CAMC-AAF5A0/2020|20-10-22 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T (225) > C4672T,C8605T,C11003T +England/MILK-ABBF2B/2020|20-10-22 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > T1947C (224) > (224_polytomy_0) > C7528T,C29555T (227) > C10474T,C13536T +England/QEUH-96A85E/2020|20-08-14 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > T1947C (224) > (224_polytomy_0) > C7528T,C29555T (227) > T23986C +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > T1947C (224) > (224_polytomy_0) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > C14724T +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > T1947C (224) > (224_polytomy_0) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > A6391G +England/PHEC-149F0D/2020|20-11-19 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > C2836T,G21724T (229) > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T (230) > +England/MILK-BE717A/2020|20-11-29 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > C2836T,G21724T (229) > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T (230) > C11003T,C26404T,G26754A +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > C2836T,G21724T (229) > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T (231) > C9745T,C10440T +Scotland/QEUH-BEAF22/2020|20-12-04 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C22444T,C28854T (223) > (223_polytomy_0) > C2836T,G21724T (229) > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T (231) > G4105T,C4754T,C5730T,C21597T,T21841A +England/MILK-A230C1/2020|20-10-03 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > A2175G +Northern_Ireland/QEUH-969C53/2020|20-08-14 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > C19545T,C26408T +England/ALDP-9E79B0/2020|20-09-24 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > G1464A,A10978T,T20799C (335) > G18803T (338) > C5817T,T10321C,A10724G,C16469T,C21635T,G25320T +England/MILK-B561FE/2020|20-11-06 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > G1464A,A10978T,T20799C (335) > G18803T (338) > C1288T,T16213C,A23631G,C26681T,G27882T +England/CAMC-9DFBC4/2020|20-09-21 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > C6317T (370) > G9658T,T21841C +England/QEUH-AD1165/2020|20-10-25 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > C6317T (370) > C4795T,T5471C,A21631T +England/ALDP-FB5E3E/2021|21-01-11 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > G17944T,C24334T,T24814C,C27769T (371) > G1141A,T11522G,A13315G,C18744T,T21973C +England/ALDP-E8756E/2021|21-01-04 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > G17944T,C24334T,T24814C,C27769T (371) > C12781T,G17632A,C28453T +England/ALDP-A2EAE6/2020|20-10-05 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > (369_polytomy_2) > T24769C,C25460T (372) > C337T,T21294A,G21295A,G21296A,A25008G +Scotland/QEUH-A636C3/2020|20-10-10 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > (369_polytomy_2) > T24769C,C25460T (372) > C593T,T26903C,C26936T +England/QEUH-A76C07/2020|20-10-12 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > (369_polytomy_2) > (369_polytomy_3) > C15480T (373) > G21777A +England/MILK-AC7997/2020|20-10-21 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > (369_polytomy_2) > (369_polytomy_3) > C15480T (373) > C125T +Scotland/QEUH-9DC927/2020|20-09-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > (369_polytomy_2) > (369_polytomy_3) > G8179T (374) > C4794T,T8179G,G23006A +Scotland/QEUH-9B75D3/2020|20-09-04 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > (361_polytomy_0) > C27944T (366) > (366_polytomy_0) > (366_polytomy_1) > G204T (367) > C21614T (369) > (369_polytomy_0) > (369_polytomy_1) > (369_polytomy_2) > (369_polytomy_3) > G8179T (374) > G29778T +England/CAMC-AEACFF/2020|20-10-25 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > G1820A,C3373A,C6883T,G21724A,G28003C (515) > C12249T (516) > C3141T,C4683T,C8683T,C17690T,T19935C,C24130T,A27979G +England/MILK-97356A/2020|20-08-14 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C15720T +England/MILK-9A9F7C/2020|20-08-31 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > C4893T,C7844T,T24925C,C27920T,C29762T (321) > G19879A,C25433T +England/OXON-F42364/2020|20-12-18 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > C4893T,C7844T,T24925C,C27920T,C29762T (321) > G1306T,G4510T,T8662C,C8733T,C18032T +England/MILK-9C2766/2020|20-09-10 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > G2072A,C27294T (337) > T22189C,G27382C,A27383T,T27384C +England/ALDP-A95A9F/2020|20-10-19 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > G2072A,C27294T (337) > T14499C,C17118T,C23854T,A27865T,T27866A +England/PHEC-149FA3/2020|20-11-20 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > G1820A,C3373A,C6883T,G21724A,G28003C (515) > C12249T (516) > G3431T,T25577C,C25626T,C27002T (517) > G3433A,G8084A,C11941T,C18555T,A26174C +England/QEUH-C9332B/2020|20-12-17 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > (28_polytomy_2) > (28_polytomy_3) > G28881A,G28882A,G28883C (427) > (427_polytomy_0) > (427_polytomy_1) > G1820A,C3373A,C6883T,G21724A,G28003C (515) > C12249T (516) > G3431T,T25577C,C25626T,C27002T (517) > G9314A,C13605T,G14490A +England/CAMC-A649C9/2020|20-10-10 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C556T,C23525T (242) > C6813T,C13620T +England/MILK-B04890/2020|20-10-24 C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T,C26735T (212) > (212_polytomy_0) > (212_polytomy_1) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C556T,C23525T (242) > G8371A,C23679T +England/CAMC-A57F03/2020|20-10-09 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > C25386T (324) > T505C,A2419G,G17058T +England/MILK-A7D15C/2020|20-10-13 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > C25386T (324) > C21302T,C21304A,C26256T,C27119T,C28453T +Wales/PHWC-47F3A5/2020|20-10-07 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > G28817T (325) > T9655C,G28198T +England/ALDP-A85BCC/2020|20-10-17 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > G28817T (325) > T209C,T11857C +England/ALDP-A2FCA3/2020|20-10-05 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C20451T,G21770A (326) > T7919G (327) > C24734T +Scotland/MILK-A69E6B/2020|20-10-09 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C20451T,G21770A (326) > T7919G (327) > A28483G,A28877G +England/MILK-A7D1A7/2020|20-10-13 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C20451T,G21770A (326) > G18583A (328) > T4579A,T27835C +England/MILK-A91486/2020|20-10-16 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C20451T,G21770A (326) > G18583A (328) > G2272T,G20679T,G24586T +AUT/2021006354/2021|MW672357.1|21-02 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C16394T,C22127T,G23876A,G25947T (329) > C829T,C14697T,C18176T,G19398T,G28083T,G28975T (333) > C878T,C12374T,C20384T,C21639T,C29367T +England/MILK-E7F4C6/2021|21-01-02 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C16394T,C22127T,G23876A,G25947T (329) > C829T,C14697T,C18176T,G19398T,G28083T,G28975T (333) > T9070C,C10296T +England/ALDP-AA169C/2020|20-10-22 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > G25218T (331) > C23191T,G23909A +England/MILK-A474DA/2020|20-10-06 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > G25218T (331) > A6659G +England/ALDP-B483EA/2020|20-11-07 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > T8110C (332) > C10039A,T18402C,C29738T +England/QEUH-AA0035/2020|20-10-20 C241T,C3037T,C14408T,A23403G (28) > (28_polytomy_0) > (28_polytomy_1) > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > (322_polytomy_0) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > T8110C (332) > G11417T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_13_sample_names.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,138 @@ +England/MILK-9A8AB8/2020|20-08-31 +England/CAMC-106415F/2021|21-01-15 +England/CAMC-C470F2/2020|20-12-10 +Spain/R60/2020|LR884131.1|20-04-17 +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 +England/QEUH-9C7EA8/2020|20-09-11 +Scotland/QEUH-9D11C0/2020|20-09-16 +England/QEUH-A0077A/2020|20-10-02 +England/ALDP-AA0ED1/2020|20-10-22 +England/QEUH-A4CF6B/2020|20-10-05 +Switzerland/270068/2020|LR882987.1|20-09-02 +Switzerland/332169/2020|LR898966.1|20-10-22 +England/MILK-ABB8D5/2020|20-10-21 +England/NORT-2884A8/2020|20-11-22 +England/QEUH-AD0DDB/2020|20-10-26 +Wales/MILK-9E3240/2020|20-09-21 +England/CAMC-949688/2020|20-07-27 +England/SHEF-C3AED/2020|20-07-30 +England/MILK-99D755/2020|20-08-31 +England/MILK-99D764/2020|20-08-31 +Wales/PHWC-48212D/2020|20-10-20 +England/QEUH-9C80B0/2020|20-09-10 +England/MILK-A06194/2020|20-10-01 +England/CAMC-B32AA2/2020|20-11-05 +USA/AK-PHL660/2020|MW173157.1|20-06-27 +England/LOND-DC4E3/2020|20-11-04 +England/MILK-99D3AC/2020|20-08-31 +England/PHEC-1491AD/2020|20-10-17 +England/QEUH-9B3A8D/2020|20-09-04 +England/NORW-F1F9C/2020|20-10-24 +England/PHEC-14E15D/2020|20-12-09 +England/PHEC-149635/2020|20-10-28 +England/ALDP-A95DE1/2020|20-10-20 +England/ALDP-9E75E9/2020|20-09-25 +England/MILK-AC7B0A/2020|20-10-21 +England/NOTT-11336A/2020|20-09-16 +England/MILK-A799FE/2020|20-10-15 +England/CAMC-A417F5/2020|20-10-06 +England/QEUH-AE2A48/2020|20-10-26 +England/ALDP-A68CF9/2020|20-10-12 +England/CAMB-1B6439/2020|20-09-22 +England/MILK-9F1898/2020|20-09-25 +England/MILK-A7CDC2/2020|20-10-13 +England/CAMC-A5845E/2020|20-10-08 +England/ALDP-AA10DA/2020|20-10-22 +Wales/PHWC-4815AA/2020|20-10-13 +England/QEUH-962E81/2020|20-08-10 +England/QEUH-96E605/2020|20-08-17 +Japan/TKYE622411_2020/2020|LC593808.1|20-07 +England/CAMC-B36516/2020|20-11-05 +England/CAMC-B362D3/2020|20-11-05 +England/MILK-B3A284/2020|20-11-01 +England/CAMC-B365AD/2020|20-11-05 +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 +Poland/1/2020|LR899030.1|20-05-20 +England/MILK-6166F0/2020|20-07-05 +England/ALDP-9BCA93/2020|20-09-09 +USA/WI-UW-1194/2020|MT981478.1|20-08-11 +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 +England/SHEF-CDD62/2020|20-05-27 +England/SHEF-10B22B9/2020|20-04-20 +England/QEUH-9B703C/2020|20-09-09 +England/MILK-970CE0/2020|20-08-18 +England/SHEF-10C9BD2/2020|20-12-20 +England/SHEF-10CC3AA/2020|20-12-17 +England/MILK-A1BC04/2020|20-10-03 +England/ALDP-9BE8B5/2020|20-09-09 +Scotland/EDB10724/2020|20-12-04 +Scotland/CVR4309/2020|20-09-14 +England/QEUH-AE4EA4/2020|20-10-27 +England/ALDP-9BECB9/2020|20-09-10 +Wales/PHWC-16E6A3/2020|20-10-02 +England/MILK-9A9D09/2020|20-09-01 +England/QEUH-B6C0E9/2020|20-11-11 +England/CAMC-AEA62E/2020|20-10-25 +England/MILK-11A5634/2021|21-01-29 +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 +England/LOND-12F65DC/2021|21-01-19 +Switzerland/310500/2020|LR898805.1|20-10-08 +Switzerland/300433/2020|LR898634.1|20-09-29 +England/MILK-9A699F/2020|20-09-01 +England/CAMC-947392/2020|20-07-18 +England/MILK-977469/2020|20-07-24 +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 +England/CAMC-A65DDB/2020|20-10-11 +England/CAMC-AAF5A0/2020|20-10-22 +England/MILK-ABBF2B/2020|20-10-22 +England/QEUH-96A85E/2020|20-08-14 +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 +England/PHEC-149F0D/2020|20-11-19 +England/MILK-BE717A/2020|20-11-29 +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 +Scotland/QEUH-BEAF22/2020|20-12-04 +England/MILK-A230C1/2020|20-10-03 +Northern_Ireland/QEUH-969C53/2020|20-08-14 +England/ALDP-9E79B0/2020|20-09-24 +England/MILK-B561FE/2020|20-11-06 +England/CAMC-9DFBC4/2020|20-09-21 +England/QEUH-AD1165/2020|20-10-25 +England/ALDP-FB5E3E/2021|21-01-11 +England/ALDP-E8756E/2021|21-01-04 +England/ALDP-A2EAE6/2020|20-10-05 +Scotland/QEUH-A636C3/2020|20-10-10 +England/QEUH-A76C07/2020|20-10-12 +England/MILK-AC7997/2020|20-10-21 +Scotland/QEUH-9DC927/2020|20-09-22 +Scotland/QEUH-9B75D3/2020|20-09-04 +England/CAMC-AEACFF/2020|20-10-25 +England/MILK-97356A/2020|20-08-14 +England/MILK-9A9F7C/2020|20-08-31 +England/OXON-F42364/2020|20-12-18 +England/MILK-9C2766/2020|20-09-10 +England/ALDP-A95A9F/2020|20-10-19 +England/PHEC-149FA3/2020|20-11-20 +England/QEUH-C9332B/2020|20-12-17 +England/CAMC-A649C9/2020|20-10-10 +England/MILK-B04890/2020|20-10-24 +England/CAMC-A57F03/2020|20-10-09 +England/MILK-A7D15C/2020|20-10-13 +Wales/PHWC-47F3A5/2020|20-10-07 +England/ALDP-A85BCC/2020|20-10-17 +England/ALDP-A2FCA3/2020|20-10-05 +Scotland/MILK-A69E6B/2020|20-10-09 +England/MILK-A7D1A7/2020|20-10-13 +England/MILK-A91486/2020|20-10-16 +AUT/2021006354/2021|MW672357.1|21-02 +England/MILK-E7F4C6/2021|21-01-02 +England/ALDP-AA169C/2020|20-10-22 +England/MILK-A474DA/2020|20-10-06 +England/ALDP-B483EA/2020|20-11-07 +England/QEUH-AA0035/2020|20-10-20
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_14_all_paths.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1704 @@ +1 +2 C24034T +England/BRIS-1853249/2020|20-04-02 C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 +3 C875T +Wales/PHWC-25B04/2020|20-03-24 A20637G +Wales/LIVE-A6831/2020|20-03-16 T14859C +4 C7423T +Scotland/EDB1317/2020|20-04-09 G4207A,T7423C +Scotland/EDB354/2020|20-03-30 A29780C +5 C20270T +England/SHEF-BFF8B/2020|20-03-25 C1473T +6 A29683T +7 A18671G +England/LCST-24D7202/2020|20-06-22 C4021T,A9963T,T24027C +England/SHEF-BFF21/2020|20-03-25 +England/LIVE-A4C46/2020|20-03-12 G431A,G26754A,C28725T +8 T4949C +England/SHEF-BFFC7/2020|20-03-25 G28027T +England/PHEC-1E01E/2020|20-04-03 C22445T +9 C29635T +DP0476/2020|LC571003.1|20-02-16 C29592T +DP0191/2020|LC570980.1|20-02-15 A3854G +10 C14805T,G26144T +11 T17247C +12 C12400T +Switzerland/100159/2020|LR884273.1|20-03-16 C16995T +England/LOND-126031F/2020|20-03-15 A20511G +Scotland/EDB046/2020|20-03-15 C9996T,T26144G +13 C8078T +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +14 A7479G,C25572T +Wales/PHWC-285F4/2020|20-04-01 G12191T,G16188T,C19524T,C28887T +England/BRIS-130965/2020|20-04-13 C10741T,C27498T +15 A1587G +Scotland/CVR44/2020|20-03-13 G443A +Scotland/CVR839/2020|20-03-27 T7816A,C24023T +16 C988T +Scotland/GCVR-170107/2020|20-03-23 G1857T,A5570G,A9483G +Scotland/CVR207/2020|20-03-18 G12832A +17 A1515G,C9223T +England/NORT-284A9B/2020|20-03-25 G28655A,C28657T +Scotland/CVR10/2020|20-03-10 T9223C,A21625G +England/EXET-135818/2020|20-04-11 C7703T,T9352C,G27201T +18 G28842T +England/BRIS-12EEB6/2020|20-04-22 C15240T,C18086T,T23031C +Scotland/EDB199/2020|20-03-26 C22713T,G26031T +19 C23707T +England/CAMB-74A09/2020|20-03-18 G6981T,G10112T,G22785T +England/ALDP-9EE3AC/2020|20-05-06 G20991T +20 A2480G,C2558T +England/CAMB-8042A/2020|20-04-10 A4015T +England/CAMB-737B8/2020|20-03-30 G3971T,G28380T +21 A4236G,T25655C +USA/WA-S885/2020|MT642386.1|20-04-22 G7739T,C25904T +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 A5269G,C9943T +22 G5572T +USA/WA3-UW1/2020|MT163716.1|20-02-27 T2446C,C3411T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 C28311T +23 G13627T,C15540T,A28338G +England/BRIS-1265AA/2020|20-04-10 T9046C,C11779A,C27688T +AUS/NT38/2020|MT641726.1|20 G1599T,C3096T,C12781T,G17944T +24 A10982G +England/LIVE-A5D06/2020|20-03-17 C6681T,G11801A +England/LIVE-A065B/2020|20-05-27 C823T,C8752T,A9741C,C19961T,C26333T,C26408T +25 C241T +26 C14408T +France/40002VJ/2020|MT470179.1|20-03 C2416T,G12079C,C23220A +27 A23403G +Wales/PHWC-310CA/2020|20-04-11 A2480G,A12529G,T14408C,G26144T +28 C3037T +29 G7042T,G8861T +England/BRIS-123965/2020|20-04-07 C5806T,C10450T +England/BRIS-125347/2020|20-03-27 +30 C4809T +IND/Isolate_9088/2020|MW555597.1|20-06-30 G14245A,G28325A +IND/763/2020|MT577009.1|20 +31 G25429T +32 C16289T +England/CAMB-76515/2020|20-03-29 T25429G +England/CAMB-1AE294/2020|20-04-27 T4587A,G12833A,C15824T +33 C13730T +England/LEED-2A8D10/2020|20-03-31 C25916T +England/CAMB-1AC6F4/2020|20-04-21 C6558T,G9130T,G26529T +34 C25916T +35 A10874G,T26677C +36 G25440A,G29745T +Scotland/EDB2049/2020|20-04-18 T25916C +Scotland/EDB2100/2020|20-04-19 +England/CAMB-1AC7D3/2020|20-04-22 A13863G +England/CAMB-7EBDF/2020|20-04-07 A13433G,C18377T +37 C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +England/MILK-BB0F16/2020|20-11-17 G7675T,C12406T +England/CAMC-BBDD4C/2020|20-11-22 C2939T,C5934T,C21635T,T27988C,C28775T +38 G17278T,C19610T,T26906C,G29688T,G29757T +Scotland/CVR2381/2020|20-04-13 C1848T +Scotland/CVR2197/2020|20-04-11 G21776T +39 A28841G +Scotland/CVR3417/2020|20-05-07 G3689A,T11660A,C29743T +Scotland/CVR1519/2020|20-04-03 A6441G +40 G1141T +England/MILK-93B73B/2020|20-06-21 C3817T,C25160T,C28099T +England/MILK-9589F6/2020|20-06-15 C7488T,C14396T +41 C28045T +England/BRIS-128441/2020|20-04-16 G10324T,C22713T +England/CAMB-7C39D/2020|20-04-13 G2885T,G26458C,C29253T +42 C3602T,A24232G +England/NORW-E8C37/2020|20-04-13 C11460T +England/NORW-E75A6/2020|20-05-04 T3602C,C6538T,T21206G +43 G1589A,G29474T +Wales/PHWC-3122E/2020|20-04-10 A22457G +Wales/PHWC-1645EC/2020|20-05-10 A11438G +44 G21538T +England/ALDP-50085E/2020|20-06-27 T11164G,G15406T,G22332A,G27583T,G29427T +England/PHEC-127E8/2020|20-03-28 +45 G28514T +England/CAMB-75BD8/2020|20-03-29 C18060T +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 T4579A,C5175T,T18552C,C25521T,G27877T +46 G1914A,T16456C +England/ALDP-9ED9F6/2020|20-05-05 C10681T,G16855T,C26060T,C29614T +England/ALDP-944BD9/2020|20-06-07 G4399T,G27746T +47 C25665T,G28325T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 G16075T +48 C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +USA/WA-S3017/2020|MW474188.1|20-08-15 G4508A,T7884C,C21811T +USA/WA-S2852/2020|MW079820.1|20-09-01 C17795T,G26230T +49 G3871T +USA/WI-UW-26/2020|MT706147.1|20-03-24 A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 C19862T +50 C2939T +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 C6401T,C18877T,G28882T +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 T11698C,C18322T +51 A696C +USA/IN-QDX-184/2020|MT786818.1|20-04-28 G3871T,T27299C +USA/WI-UW-558/2020|MT750137.1|20-06-25 +52 G24077T +AUS/VIC2260/2020|MT972173.1|20-06-22 G14294A,A23746G,T24077A,A29622C +England/EXET-1358BE/2020|20-04-15 A20092G,T28630G +53 G25563T +54 C8389T +55 G27915A +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 C815T,C3411T,T10795C,A17521G,C18452T +56 C601T +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 A17521G,A22206G +57 G12832T +USA/COVID20-0537/2020|MT981422.1|20-06-04 C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 A28165G +58 G1319A +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 C23551T,G27084T +59 G2945A,C10156T +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 T17208C +USA/WI-UW-269/2020|MT429191.1|20-04-06 A23588T,C27657T +60 C23453T +England/LEED-2A91D7/2020|20-04-06 T1778C,C6762T,C28849T +England/LEED-2A87C7/2020|20-04-03 G3230A +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 C1997T +61 C1059T +62 C24381T +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 C23718T +63 C24442T +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +64 A13512T,G13513T,G13514A +USA/WA-UW-4105/2020|MT358746.1|20-03-31 T1333A,T1334A +USA/WA-UW-2220/2020|MT345839.1|20-03-23 T1059C,C15763T,T25563G +65 G1298A +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 C344T,C5090T,C10228T,A22001G +66 T20037C +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 G2900T,C23179T +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 G28073T +67 T1059C,C1594T,C11109T +England/CAMB-7A7DF/2020|20-04-02 G8578A +Netherlands/NA_18/2020|LR878352.1|20-03-09 C23506T +68 C18555T,C28892T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 A6035G +69 C2668T +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 C1912T,G2867T,C12651T +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 T18240C,T28009C +70 G24368T +71 C10376T,G18583T,G29773T +Wales/PHWC-340A9/2020|20-04-20 G7675T,G18318T,T21745C,C27610T +Wales/PHWC-1667A8/2020|20-05-26 C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C +72 A3103C,C5893T,A28117T +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 A28356G +73 A10323G +74 T15276A,G28842T +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 G11417T,A15276T,G20679T,T21291C +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T +75 G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +England/PHEC-14F5D8/2020|20-12-29 C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A +76 A22206G +77 A2692T,C21614T,C26645T +Scotland/EDB11343/2020|20-12-26 G9049T,C20405T,A25806G +Scotland/EDB11342/2020|20-12-26 A4459G,A18846G +England/QEUH-CAF17D/2020|20-12-15 C9142T,C19524T +78 C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +England/LIVE-DAB556/2020|20-10-18 G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C +England/PHEC-14DE93/2020|20-11-11 G204T,C6286T,C21614T,C22227T,T26424C +79 G24368T,C24621T +Wales/PHWC-1658A6/2020|20-05-19 G2830A,A2903G,C7869T +Wales/PHWC-2E0A2/2020|20-04-10 C18568T +80 C18744T,A18978G,A29391G +England/ALDP-952A53/2020|20-06-13 C1190T,G25273T,C29249T +England/ALDP-95A745/2020|20-06-13 G11708A,C14724T,C17550T +81 C4999T,C13730T +Scotland/EDB3137/2020|20-04-06 G25494T,C29719T +Scotland/EDB2810/2020|20-03-30 C19113T,T21752C +82 A2018G,C18029T +USA/CA-QDX-434/2020|MW064457.1|20-03-20 C8697T,T18029C +USA/UT-02231/2020|MT444626.1|20-04-15 C2445T,G20890A,G25947T,G28373T,G28374T +83 C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +USA/WA-S2850/2020|MW079819.1|20-09-01 A4935G,T26510C,G29736T,C29762G +USA/WA-S2746/2020|MT947577.1|20-07-19 +84 G19542T,C23551T,C28821A +USA/WI-UW-879/2020|MT846567.1|20-07-14 G3403T,G13201T,C26527T +USA/UT-05590/2020|MW084605.1|20-06-01 A2151G +85 G18281A,A20755C,G25784T +Netherlands/NA_588/2020|LR883860.1|20 A20742G +Netherlands/NA_583/2020|LR883819.1|20 C4113T,C6555T,C25731T +86 C11916T +87 G1990T,C2939T,A5264G,C16457T +USA/WA-S2992/2020|MW474166.1|20-08-12 G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 G596A,G1820A,G9526T,C14183T,C28344T +88 G28376T +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +89 G26020T +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 C4012T +90 G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 C8109T +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 T12925C +91 C18998T,G29540A +92 A20553G +USA/COVID20-0777/2020|MW002812.1|20-06-26 G4285A,G6421C,C16173T +USA/VA-DCLS-1147/2020|MT992749.1|20-04 G22487C +93 G25947C +USA/VA-DCLS-1512/2020|MW197472.1|20-07 G526T,T6949C,C29366T,C29750T +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 C23685T,G27703T +94 C28863T +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T +95 C19145T +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 G4285T,T5059C,C16230T,C23525T,G25471T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 C5540A +96 T13914C +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 G3638A,C16217T +97 C10458T,G26828T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 C18693A +USA/1453xE2/2020|MW521402.1|20-07-05 G7042T,C11396A,C21855T,G28655T +98 A9984C,G25445T +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 A9935G,T16632C,C19185T,C28824T,G29628T +USA/WA-S2867/2020|MW173410.1|20-09-20 G9278A,G11693T,C14937T,C21017T,C21219T +100 G26217T +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 C21731T,G29645T +England/CAMC-947D3A/2020|20-07-17 G105T,T10288C,C13821T,C26625T,A29752T +101 C715T,A23586G +USA/WI-UW-1126/2020|MT929103.1|20-08-13 G487A,C4876T,A5877G,C18555T,A27489G,C28045T +USA/WI-UW-1071/2020|MT929023.1|20-07-29 G1957T,C2623T,C13115T,G22026T +102 C13252T +USA/VA-DCLS-0481/2020|MT951936.1|20-05 C799T,C6701T,C23604T +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +103 C16650T,A20675T,G29179T,G29779T +KOR/YS006/2020|MW345824.1|20-06-04 C26261T +KOR/YS008/2020|MW345825.1|20-06-07 +104 G28027T,G29742T +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 C12754T,A14012T,G14250T,C22687T +USA/WA-S1037/2020|MT642186.1|20-05-03 A18671C,C25466T +105 G1738T,C11916T,C28087T +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 G3242A,T11449C,T14508C,A26126T,T28087C +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 G9928T,A20716G,A24383G,G25538T,G28123T +106 A12820G,C16762T,A17637G,C20762T,C28887T +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 C676T,A3536G,C29370G +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 +107 C379A +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 C10369T,C12115T,G12202T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 A20503G +108 C27964T +USA/WA-UW-2108/2020|MT345811.1|20-03-24 G3259T,T27964C +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 G14580A,T19527C,A19821G,G22346T,C28099T,C29722T +111 T833C +112 A22320G +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 C3411T,G8114A,C11095T,G15908A +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T +113 G9705T +USA/UT-05592/2020|MW054143.1|20-06-01 A3121C,G23009T,G27637A,C29743T +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 C8389T,T19839C,G25523T,T29685G +114 C28833T +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 C3817T,A23813G +115 C9967T +USA/VA-DCLS-1006/2020|MT952676.1|20-06 T18641C,C23208T,G25793T,C27807G +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 G17590T +116 G10902A +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 C7173T,G11596T,C13994T,C25546T +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 G2659T,C3622T,G7936T,T9379A,A12148G,C18687T +117 G17808T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 C15352T +118 C24378T +USA/UT-00495/2020|MT444543.1|20-04-02 G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 T11131A +119 C4878T,A22525G,C29272T,G29449T +USA/UT-02970/2020|MW053933.1|20-05-01 A22681C,G28202A +USA/UT-08378/2020|MW206039.1|20-05-26 C222T,A454G,C11750T,T17772C,G21099T,T29449G +120 G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +USA/IL-UW-1064/2020|MT929016.1|20-07-26 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 G7936A,A8040G,G29402T +121 A19899T,A21464G +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 G4232T,C9120T,A18500G,G22093A,T23296C,G25444A +122 C25777T,C29614T +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 G23311T,G24977C +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 G25471C,G28899T,G29779T +123 T8788C,G26951A +England/CAMB-7771E/2020|20-03-30 C4586T +England/CAMB-7DC91/2020|20-04-05 C4321T +124 C7528T +USA/WI-UW-1092/2020|MT929042.1|20-07-27 G271T,T13270C,C28093T,C28890T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 G8213A +125 C775T,C27923T,G28975T +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 C23683T +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 C3044T,C9979T,C10369T,G19072T +126 A12557C +USA/WA-QDX-235/2020|MT806806.1|20-04-27 A23534T +USA/WA-S1266/2020|MT821676.1|20-05-13 T4441C,G6125A,C17639T +127 C1917T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 G29431T +128 C23191T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 A25910C +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 C9907T,C17125T,T18144C +129 G15906T +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 C5548T,C28153T +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T +130 C10582T +131 C1076T +Scotland/EDB3598/2020|20-04-27 G22244T,C26461T +Scotland/EDB2451/2020|20-04-23 T10963A +132 C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +England/MILK-9934B2/2020|20-08-26 C9246T,C11747T,C13378T,G19056T,C28744T +Switzerland/240029/2020|LR880608.1|20-08-10 T27622C +133 C28887T +134 C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +137 C2395T,T2597C,A12878G,G17014T,G21600T,G22018T,T22917G,T24349C,C26681T,G27890T,A28272T,C29362T +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T +139 T1171C,A5747G,C10789T,G17259T,G24007A +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 C10228T,C13335T,T14408C,C25611T,G29705T +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G +140 C6843T,T11764C,G29402T +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 T21294C,G28936A,A29115T +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 C13176T,T17040C,C24106T +141 C28893T +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 G22021A,C22998T,G23501T +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T +142 T9070C +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 C20325T +USA/CA-CZB0731/2020|MT385450.1|20-03-31 G9049T,T10960C +143 C25688T +144 C4320T +England/MILK-958598/2020|20-06-09 C5175T,A15283G,G16861T,C20844T,T27539C +England/ALDP-4F4092/2020|20-06-24 C1627T,C11494T,C14076T,T18309C,G20670A,C29529T +145 T13006C +England/LIVE-A91F7/2020|20-03-25 C19186T +England/CAMB-1AE865/2020|20-04-30 C1437T,A24070T,C26013T,C27945T +146 G3892T +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 G20062T +147 C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 G2272A,C7267T,G21193T +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 A5368G,C14220T,G21193T,C29363T +148 C16260T,C28821A +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 C5979T,A9337G,C18695T +USA/IL-UW-385/2020|MT772536.1|20-05-23 C12525T,G21604T,C25728T,G28378T +149 C20555T,C21772T +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 A6414G,A22101T,G24872T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 C16428T +150 G25523T,T27869C +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 C3044T +USA/WA-UW-2008/2020|MT326031.1|20-03-24 G4975T,T29194C +151 T20049C,C21627A,C23655T +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 C11102T,A12174G +USA/UT-03041/2020|MW053962.1|20-05-01 C22295T,C22323T +152 C66T,C17069T,C26801T +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 C13761T +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 A26864T +153 C26625T +USA/WA-UW-6327/2020|MT412324.1|20-04-02 C5240G +USA/WA-UW-3832/2020|MT358685.1|20-03-26 C3141A,C17766T +154 C27847T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 C6628T +155 T8041C,G22225T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 C18029T +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 G26828A,C28005T +156 C335T,T16425G +USA/WA-S2725/2020|MT947550.1|20-07-07 G248T,T4138G,C9120T,A12197C,C15951T,G16425T,G22918T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 G526C +157 T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 C1912T,C21058T,G21468T,G25681A,C27603T +USA/WI-UW-994/2020|MT846680.1|20-07-20 +158 C1968T,G29705T +England/BRIS-128CA3/2020|20-04-14 C4586T,C29738T +England/BRIS-12B1CF/2020|20-05-15 C7843T,C9438T,T15254C,T16062C +159 G28808T,G29434C +England/BRIS-12C762/2020|20-05-13 G10096A,G23755T,G24199T +England/BRIS-127AD7/2020|20-04-16 G3638T +160 C5310T,C12294T,C25511T +USA/WI-UW-491/2020|MT750074.1|20-06-11 C2003T,T22825C +USA/WI-UW-522/2020|MT750102.1|20-06-24 +161 C11919T +USA/DC-HP00089/2020|MT509482.1|20-03-31 C9510T +USA/UT-03817/2020|MT873871.1|20-04-03 A13440G,C21998T +162 G1463A,G7557A,C8818T +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 C3264T,G21204T +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 A20284G,C22477T,C23604T +163 C5183T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 G28878T +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 A361G,C27596T +164 C25976A +USA/MI-QDX-620/2020|MW064645.1|20-03-17 G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 C18981T +165 C7851T,C20233T +England/BRIS-12D9F2/2020|20-05-06 A20262G +England/BRIS-12B156/2020|20-05-08 A13707G +166 C25572T +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 G29747T +AUS/VIC1161/2020|MT451779.1|20-04-09 C18744T,C29284T +167 C16762T +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 G4105A,C4878T,G10759T,G18803T,A24478T,C29296T +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T +168 G29291A +England/OXON-B15A5/2020|20-04-29 C6627T,A11740T,G18984T,C24023T +England/BRIS-129D72/2020|20-04-15 C1593T,C10440T +169 A27821G +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 C2878T,G3146A +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 G7405T,G11113A,C12225T,G25437T,C25516T +170 G2286A,A4197G,G7954T,A10552G,A28715T +USA/VA-DCLS-1282/2020|MW067700.1|20-08 C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T +USA/COVID20-1144/2020|MW067817.1|20-07-10 T25577G +171 C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 G26730T +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 C5140T,G29290A +172 C1887T +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 A27979T +173 C829T,G28371T +Wales/PHWC-1662B6/2020|20-06-13 G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A +Wales/PHWC-26B12/2020|20-03-29 +174 C10851T +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 T3037C +USA/CT-UW-4372/2020|MT345874.1|20-03-30 C3768T,C25584T +175 C5312T,G27852T +England/BRIS-12BF3E/2020|20-05-09 G4960T,C6633T,T10732C,T20285G,C28005T +England/BRIS-12DF1E/2020|20-06-04 A5452G,C21846T,G28337A,G28378T +176 A8252G +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 C8637T,C9360T,G11540T,A23299G,G25311T,G29745T +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 G15193A,C25626G +177 C1734T,C23664T +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 G840A,C19032T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 G12160T +178 G1495T,T7332C,T7831A,G28845T +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 C9996T,C27498T,G28362C +179 C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 C1060T,C2358T,C4543T,C9226T,C22227T,T24326C,T25510A,T29171C,G29511T +USA/VA-DCLS-1517/2020|MW197475.1|20-07 A10912G,C12733T +180 C475T,C5986T,A28389T +USA/WI-UW-1268/2020|MW035438.1|20-08-25 C9491T,C12754T,G15100T,C15154T,C20970T,C28657T +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 C775T,C2488T +181 G20709T +Northern_Ireland/NIRE-1021DD/2020|20-03-14 A6360G +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 C4002T,G17338T,A21080C,G22104T +182 G3231T,A12850G,C21364T,A23064C,C28890T +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 T16752G,C23064A +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 C823T,A9397G,A23362T,G26654T,G29140A +183 G18213T,A18818G +Scotland/EDB6146/2020|20-05-14 T7814C,C11339T,A21137G +Scotland/EDB6052/2020|20-05-08 +184 C9286T,G28899C +England/CAMB-7FBCF/2020|20-04-16 A12556G +England/CAMB-784BC/2020|20-04-06 A13852G +185 C25731T,C29625T +England/PHEC-15A73/2020|20-03-29 C7735T,C11757T,C18501T +USA/CA-QDX-796/2020|MW064788.1|20-03-23 C16329T,C23536T,G27906T +186 C6406T,G18972A +B90|LR898037.1|? A21360C +O9|LR963074.1|? A1925C,C5796T +187 A24129G +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 G1325T,A6351C,C12741T +USA/WI-UW-738/2020|MT772509.1|20-06-30 T3049C,G4972A +188 C66T,A538G,T9107C +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 T4324G,C23029T,T26543A,A28254G +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 G23426C,A26070G +189 T4888A,G28727T +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 T5674C,C8290T +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 C466T,A17691G +190 G7295T +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 C28290T +England/CAMC-946515/2020|20-07-15 C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T +191 C2416T +192 G26233T,C27881T +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 A16766G,T28250G,G28681A +193 G8371T +194 C2937T +BHR/600023154_S29/2020|MW237743.1|20-10-14 G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 C21310A +195 C22477T +196 C882T,C17746T,G19962T,G28907T +England/ALDP-955F15/2020|20-06-08 G25793A +England/MILK-9A6856/2020|20-08-31 T2533C,T3873G,A8031G,G23126T,C26340T +197 C3811T,G22225A +England/ALDP-94EB75/2020|20-06-17 +England/ALDP-6E2806/2020|20-07-01 T16456G,C27769G +198 C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +Scotland/QEUH-969725/2020|20-08-14 C2135T,G23856T +England/QEUH-AD1648/2020|20-10-26 C1514T,T6141A,C11490T,G13397T,C27577T +199 T15366C +USA/WI-UW-249/2020|MT706376.1|20-03-16 C8016T,G28903T +USA/WI-UW-84/2020|MT706205.1|20-03-24 C18481T,G25687A,C29296T +200 C10712T +USA/VA-DCLS-0593/2020|MT951960.1|20-03 T25304C,C28890T +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 T9708C +201 C16616T,C26885T,C27603T,C28887T +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 C7267T,A25201G,C29719T,C29774T +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 A7209G,C8950T,T17262C,T22645C,T29010C +202 C14786T,G20578T +England/PHEC-1C872/2020|20-04-16 C2453T,C11102T +England/BRIS-130015/2020|20-04-11 C6361T +203 A716G +USA/UT-04888/2020|MW084559.1|20-05-26 G4960T,G21604T +USA/UT-04282/2020|MW084509.1|20-05-14 C10456T,G19816T,G25494T +204 G10631T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 G8131T +205 C19884T +Wales/PHWC-15DFD9/2020|20-05-14 G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T +Wales/PHWC-2AF12/2020|20-04-06 C26447A +206 C875T,A10904G,G25249T,C28854T +England/CAMC-B533A0/2020|20-11-08 C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C +England/MILK-9781E9/2020|20-07-29 C1150T,C6525T,C13274T,C18555T,G19962C,C24378T +207 C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +321398|LR962930.1|20-10-13 C22208T +England/QEUH-B8053B/2020|20-11-14 G22225T +208 C6401T,C13458T,C20946T +IHUCOVID-0441|LR794655.1|? T2578C,C13105T +IHUCOVID-0428|LR794641.1|? T10480C +209 T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +USA/WA-S4490/2021|MW648014.1|21-01-21 T17607C,G20396A +USA/WA-S3458/2020|MW494078.1|20-12-07 C3535T +210 T17838C,G26450T +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +211 C18877T +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 T18877C,C25904T +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 T1683C,C22224T,C28367T +212 C26735T +213 C882T,C6990T +England/CAMC-A3E658/2020|20-10-05 T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T +England/MILK-A47DDF/2020|20-10-05 T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T +215 C21614T,G24197T +England/MILK-5642D2/2020|20-06-10 T1834C,C11783A,C25413T +England/CAMB-1B3593/2020|20-05-26 A5829G,C6651T,C8326T,A11730G,T25732G +218 G28851T +IND/GBRC-366a/2020|MT951170.1|20-06-18 C26058T +IND/GBRC-392b/2020|MT954593.1|20-07-06 C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T +219 G5206T,C26885T,G28875T +Switzerland/310517/2020|LR898824.1|20-10-08 G370T,A8993G,C14763T,G25690A,C29370T +England/MILK-9AB1A1/2020|20-08-31 G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T +220 C22444T +SAU/596/2020|MT755893.1|20-02-18 A23503G +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 G11417T,G28960T +221 C593T,T3118C,T10200C,A12547G,C21772T,C28854T +Scotland/QEUH-A9E7BD/2020|20-10-20 A3120C +Scotland/EDB7778/2020|20-09-16 C28045T +222 T181C,C8664T,C12525T,C15120T,G28975T +England/ALDP-B75065/2020|20-11-12 G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A +Scotland/QEUH-AD4AFE/2020|20-10-27 A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T +223 C22444T,C28854T +SAU/578/2020|MT755891.1|20-02-17 C27527T,C29421T +Scotland/EDB6640/2020|20-05-28 T838C,G1729A,C1973T,C2919T,C23191T,T23605C +226 T1947C,T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +England/MILK-A192C8/2020|20-10-01 A538G,A1098C,C2910T,G9092A +England/QEUH-9F3FDD/2020|20-09-24 +233 G25494T +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 C1593T,C2940T,C10456T,G23611A +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 T15585A,C15613T,A24062G,T27484C +234 C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +England/CAMC-1263B05/2021|21-02-10 G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A +England/QEUH-AD3822/2020|20-10-26 G2035T,A2805G,C18555T,C21365T +236 C11514T,C13168T,G24764T +England/MILK-9A94E6/2020|20-09-01 C7764T,C27059T,G27806T,C28087T +England/MILK-566C5A/2020|20-06-12 +237 C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +England/CAMC-C2CDFC/2020|20-12-07 T3366C +England/MILK-CAA0EE/2020|20-12-18 C28411T +243 C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 C15237T +244 T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +England/MILK-EB78C6/2021|21-01-02 C6310T,C10369T +England/CAMC-C44338/2020|20-12-10 T1908C,C2947T,C17550T,C29509T +245 C16915T,T24202C,G28899T +246 G21204T,G29692T +England/QEUH-96A29C/2020|20-08-13 C15654T +England/ALDP-9EA6D4/2020|20-09-24 C8240T,C8357T +247 C26534T +England/MILK-A6AEC4/2020|20-10-09 C2910T,C16393T,A19387G,G20491A,C24378T +England/MILK-B889A0/2020|20-11-14 A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T +248 C3811T,A6608G,A28911T +England/ALDP-EEACDD/2021|21-01-03 C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T +England/LIVE-DDCD09/2021|21-01-02 A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T +249 G28086T +USA/VA-DCLS-0229/2020|MT558657.1|20-04 C10582T,C11747T,G25459T,G25555T +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 C27416T +250 T8296C,C12076T,G28690T,C28854T +Scotland/CVR3970/2020|20-08-22 G19846A,G20060T,C22227T,G22332T +England/MILK-A7D5AB/2020|20-10-13 C1929T,C3777T,G8102T,C26165T,C26681T,G28916A +251 A6512C +USA/UT-01683/2020|MT536956.1|20-04-13 G370T,A3841T +USA/UT-03892/2020|MT711875.1|20-04-13 C683T +252 G10793T +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 C29311T +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 G21724T,G25186A +253 A2161G,C16376T +USA/WA-S1281/2020|MT821642.1|20-05-12 G11417T +USA/WA-S2367/2020|MT831837.1|20-06-11 C5758T,T18453C,A28901G +254 T1918C,C6402T,C8320T,C12171T +USA/VA-DCLS-0804/2020|MT925987.1|20-07 G28079T,G29540A +USA/VA-DCLS-1454/2020|MW067779.1|20-08 G9190T,A11782G,G21893A,G26937A +255 C10507T +England/NORW-E7EBA/2020|20-05-06 A476G,A16638G,G17893T +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 C1403T,G7798T +256 C9195T,T15354C +USA/WI-UW-413/2020|MT772562.1|20-04-07 C5884T,T9195C +USA/WI-UW-288/2020|MT706396.1|20-04-08 C21855T +257 C1288T,G1298A,G25445T,G28851T,G29254T +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 C7162T,G29745A +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 +258 A1154G,G29474T +England/MILK-99DB3B/2020|20-08-31 T5785A,G15705A,G25687T,G27598T +England/ALDP-5D3DEC/2020|20-06-19 +259 A1096G,G14874T +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 C1420T +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 G15982T,G24914T +260 C2113T,C7765T,C17690T +261 T2113C,G9190T,G28851C +England/MILK-ACEE55/2020|20-10-21 C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T +Switzerland/260079/2020|LR882418.1|20-08-25 C842T,T1359C,C10702T,C11109T,C25886T,C27429T +262 T24923C +Scotland/EDB6391/2020|20-05-13 C12194T,C13968T,C14189T +Scotland/EDB5108/2020|20-03-31 +263 T5941C,A22438T +USA/VA-DCLS-0489/2020|MT951943.1|20-05 G21600T,T27672C +USA/VA-DCLS-1388/2020|MW067734.1|20-07 G1659A,A4838G,C5548T,C14220T,C14724T +264 C346T,A28959G +Scotland/QEUH-961BB8/2020|20-08-02 C9430T,G23782T,A28336G +Switzerland/250091/2020|LR881897.1|20-08-19 G11521T,T16059C,C23896T,T25078C,T27919C +265 A25524G,C26801T,G29449T +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 C10741T +266 A11246T,A23949G,C29013T +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 C9967T +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 C5392T,C18654T,C19983T,G25177T +267 T3011C,G22205T,T27869C,T28853G +USA/WI-UW-1105/2020|MT929055.1|20-07-24 C1824T,C19718T,C25919T,C29149T +USA/RML-22/2020|MW221270.1|20-08-30 T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T +268 C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +England/MILK-9750EF/2020|20-08-21 G2407C,C2902T +England/MILK-9C3D45/2020|20-09-09 G2407T,G4442T,C6525T,C11494T,G11761T,A16044T,C20468T +272 C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +BHR/740704818/2021|MW661071.1|21-01-26 C1593T,T16138C,C25667T +England/QEUH-E93C6A/2021|21-01-04 A1807G,C9565T,G18670A,C22480T,T23176C,G27916T +273 C1545T,C22879A +Scotland/CVR2931/2020|20-04-22 T1545C,C8334T,C19089T +Scotland/GCVR-172150/2020|20-03-30 +274 A11782G,G22203T +England/BRIS-124885/2020|20-03-24 T2815C,T6892C +England/BRIS-122C4F/2020|20-04-02 G27754T +275 A20268G +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 G28881A +276 G15732T,T19143C +USA/WI-UW-1046/2020|MT928999.1|20-07-29 G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T +277 C28854T +278 G27987T +Scotland/EDB3341/2020|20-04-08 +Scotland/EDB6880/2020|20-04-30 G6461T,C17550T,C24865T +279 T24076C +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 G7393T,C27804T +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 C390T,A9984C,A15250G,G15253A,G18412T +280 C18486T,T22162C +England/ALDP-B252AA/2020|20-11-04 C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 C4898T,A11934T,G23868T +281 G16741A +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 G3259T,C7720T,G11146T,G22992T,G24781T,C25584T +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 C1060T,C8334T,T21000C +282 C4633T,T14643C,C22482T +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 G27506T +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 G23126T,G25775T +283 G1135T +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 G1148T,G28109T +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T +284 G7798T +England/LOND-D5444/2020|20-04-15 C12789T +Scotland/CVR3238/2020|20-04-26 G22992T +285 G19969A +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 A4143G,C6627T,C15960T,T19341C,A27834T,C28724T +286 C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 C16362T +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 G25775T +287 T5507A +Scotland/EDB3662/2020|20-04-28 A19855G +England/ALDP-6FB8FB/2020|20-06-29 C335T,C9024T,G15906T,C21614T +288 C4596A,G19086T +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 C23114T +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 G9111A,C13517T,C17639T,A20649T +289 C8683T +England/LIVE-A00F3/2020|20-06-04 C6336T,C12672T,C13335T,G26173T +England/QEUH-544733/2020|20-05-14 C7564T,C12400T +290 C11575T +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 G6884A,C13487T,A16840C,C19029T,T22222C,C28115T +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 A1291G,A2342G,A7291G,T7645C,C7768T +291 C1714T +England/MILK-654007/2020|20-07-04 C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C +England/OXON-B1781/2020|20-05-04 C27213T +292 C28887T +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 G1843A,C3828T,C12880T,C19386T,G25252T +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T +293 G208T +294 T2845C +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 C6500T,C17125T,C21145T,C29708T +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 G9805T,G11273A,G17944T +295 G23522A +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 C24106T,C25162A,C25163A,A26927G +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 A25747C +296 G11842A,A12759G,G18292T +Switzerland/220021/2020|LR882232.1|20-07-27 A2679G,C11767T +England/QEUH-96E08F/2020|20-08-18 G11230T,G13459T,G26450T +297 A8884G,C16694A,C26177T +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 C24258T +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +298 G25049T +England/MILK-977645/2020|20-07-24 C3695T,C18744T +England/CAMC-B325A1/2020|20-11-05 G5504A,T25570C,C27303A,C28697T +299 C29200T,C29451T +England/CAMC-B34141/2020|20-11-05 G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T +England/MILK-A795AF/2020|20-10-14 C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T +300 A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 C3397T,C18591T +England/PHEC-14F392/2020|20-12-24 G3527A,T11008C,C13059T,A26594T +301 C1191T,C9521A,G29422T,A29567G +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 C24904T,A26986T +302 G2258A,A6441G,C8140T,A9204G,C29445T +USA/WI-UW-1288/2020|MW035458.1|20-09-02 C884T +USA/WA-S2808/2020|MW077495.1|20-08-31 A19137T,C19366T,G29384T +303 C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +England/CAMC-94C02D/2020|20-07-15 C27371T +England/MILK-95DBDD/2020|20-06-20 A20667G +304 G15438T +Scotland/CVR3054/2020|20-04-24 T6673C,C28887T +England/MILK-95698F/2020|20-06-06 G3340T,T7258C,T8941C,G12911A +305 A10323G,C28854T +306 G21778A,T28854C +England/CAMB-79ECC/2020|20-04-01 +England/PHEC-224A2/2020|20-06-08 C9979T,G21853T,G29195T,C29272T +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A +307 C2143T,C29370G +USA/AK-PHL414/2020|MT946886.1|20-06-03 G26062T,C29119T +USA/AK-PHL689/2020|MW173160.1|20-06-29 C6336T,G16853T,A21794G,G21800T,G25244T +308 C28833T +England/MILK-974596/2020|20-08-17 C1625T,C19170T,A20829G,A25255G,C26469T,G27666T +309 C25731T,G28703C +Switzerland/310363/2020|LR898676.1|20-10-07 G542A,A4372C,C10277T,G14268A,G29747T +310 C2706T,C28703G +Switzerland/300264/2020|LR898541.1|20-10-01 C2470T,C4084T +England/QEUH-963433/2020|20-08-10 C5339T +311 C12915T,G21255T +England/NORW-ECD21/2020|20-05-29 C1684T,C6593T,G14829T,C23525T,G29744A +England/NORW-E755B/2020|20-05-04 A4198C,C7011T +312 T9697C +England/MILK-978626/2020|20-07-30 C147T,C12473T,C19602T,C23266T,A29517G +England/MILK-9A565D/2020|20-09-03 A2140G,C3015T,C9165T,C10448T,C11866T,T28813G +313 C4582T +USA/NM-QDX-264/2020|MT806796.1|20-04-30 G6404T,C17999T,T25123C,G28378T +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A +314 T17126C +Scotland/EDB1198/2020|20-04-08 T5161A,C25046T,G29742T +England/PHEC-20A84/2020|20-04-20 C28201T,C28546A +315 C6472T,C7815T +Scotland/EDB6324/2020|20-06-01 G22363T,T23406C,T26972C +Scotland/EDB4579/2020|20-05-06 G13397A,C21682T +316 G29734C +317 C17104T +319 T7767C,C8047T,C22879A,C27800A +England/MILK-ACC08E/2020|20-10-21 G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T +Scotland/QEUH-9696CE/2020|20-08-14 C2644A,C5221T,C7844T,T24925C,C26985T,C27920T +334 G18186T,C28854T +England/CAMC-B3582D/2020|20-11-05 A9859G,C14531T +England/MILK-A796E8/2020|20-10-14 G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T +339 C3411T,C3885T +Scotland/CVR2213/2020|20-04-11 T3411C,A3413T,A5353G +Scotland/CVR1909/2020|20-04-06 C7279T,A14001G,C26801T +340 G12550A,C20740A +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 C6628T,C18483T +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 C17977T,G28975T +341 C15324T +England/NOTT-10E1B3/2020|20-03-19 T3952C,C6268T,T15324C +USA/WI-UW-37/2020|MT706158.1|20-03-22 G11417T +342 C18904T,G25606T +Wales/PHWC-360E3/2020|20-04-26 A3260G,T7185C,G21867T,G25266T,A26513G,G29462C +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 C21646T,C22208T +343 T10561C +Netherlands/NA_289/2020|LR878031.1|20-03-31 C12085T,A23173G,C28844T +France/10065EE/2020|MT470176.1|20-03 C26895T,C29013T +344 C3634T,C28854T +IND/nimh-19510/2020|MW181843.1|20-05-16 C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T +IND/GBRC174b/2020|MT607610.1|20-06-05 C22444T +345 G28202A +France/10036BG/2020|MT470106.1|20-03 +IHUCOVID-0033|LR794417.1|? G16089A,G24794T +346 C25433T +England/PORT-2D0D4C/2020|20-04-27 A10781G,A16169G,G21600T,C29546T +Switzerland/100210/2020|LR884314.1|20-03-18 C1191A,G15260A +347 A7031G,G13617T +POL/PL_MCB_72/2020|MW273854.1|20-05-10 A2848G,C9286T,C23202T +POL/PL_MCB_97/2020|MW273879.1|20-05-10 C2570T +348 G19542T,G20679A,T27576G +Scotland/CVR3629/2020|20-05-24 G18380T +Scotland/QEUH-5456F9/2020|20-05-13 C6606T +349 C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +England/QEUH-9CE80D/2020|20-09-17 A21018G,C21302T,C21304A,G21305A,C27167T,C28708T +England/QEUH-990752/2020|20-08-29 +350 C15277T +AUS/VIC38/2020|MT450953.1|20-03-11 C10350T +IHUCOVID-0133|LR794459.1|? C8394T +351 A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +England/PHEC-1555C0/2021|21-01-16 C673T,A11430G,C21846T,C22995A,C25504G,G25894A +England/MILK-E6578E/2020|20-12-30 C5184T,A9204G,A10248G,C19975A +352 G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +England/CAMC-106052A/2021|21-01-16 C14184T,A15402G,C23170T,C24138A,C24381T,T25303C +England/LOND-12F6633/2020|20-12-15 G9425T,C21997T,G24116A,C29200T +353 G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +Switzerland/240009/2020|LR880588.1|20-08-07 +Switzerland/240084/2020|LR880634.1|20-08-12 C815T,C8752T,C25904T,G27147T +354 A26530G +355 G11596T +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 G20568A +356 C8293T,T18488C,T24739C +Switzerland/101166/2020|LR824397.1|20-03-31 C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 C17118T +357 C15277T,A21917G +PER/covper020/2020|MW030251.1|20-07-03 T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T +PER/covper091/2020|MW030227.1|20-03-17 +358 A2775G,G4255T,C13568T,A20355G +England/CAMB-737D6/2020|20-03-31 C6861T +England/CAMB-1B08D9/2020|20-05-04 C14235T,G25699T +359 G3831A +Scotland/CVR2927/2020|20-04-22 A1801G,C9857T,C18568T +Scotland/GCVR-173C30/2020|20-04-07 T7441C +360 T445C,C6286T,G21255C,C22227T,C28932T,G29645T +361 C26801G +362 C3426T,C19862T +363 C11050A +England/MILK-BB0022/2020|20-11-18 +England/MILK-BB0031/2020|20-11-18 +England/PHEC-152C73/2020|20-11-16 C21682T +364 T12226C +Scotland/QEUH-96B4E0/2020|20-08-17 C3093T,C11102T,C18555T +England/MILK-9AA782/2020|20-08-31 C16362T,C19164T,G21786T,C24904T +England/ALDP-A6CC8C/2020|20-10-14 C6627T,C25791T,C26270T +394 A24862G +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 T7132C,C8327T,C9112T,C24442T,G25429T +Switzerland/140091/2020|LR824563.1|20-04-18 T658C,A2655C,C28629T +395 C7834T,C16997T,G25429T +England/ALDP-49A5AE/2020|20-06-13 C2983T,G10565A,C17336T +England/ALDP-4A2A77/2020|20-05-22 +396 C1909T +England/BRIS-12755E/2020|20-04-22 C9438T,G16647T,C22264T +England/BRIS-12468B/2020|20-04-09 T27576C +397 C2940T +England/NORW-E9DF7/2020|20-05-02 C7765T +Scotland/EDB156/2020|20-03-23 C4276T,C26822T,G29227A +398 C6990T +Wales/PHWC-27B20/2020|20-03-30 T22435C +Wales/PHWC-2624A/2020|20-03-27 C27476T +399 C29200T +Wales/PHWC-16930B/2020|20-04-01 C3264T +Wales/PHWC-34285/2020|20-04-14 A6616G,C12915T +400 C26256T,C29668T +USA/UT-08320/2020|MW206019.1|20-05-15 A11782G,G27987T,C28292A,G29755T +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 C5184T,C5416T,G8017T +401 T26512C +Wales/PHWC-2BF8A/2020|20-04-02 C19011T,C22323T,C26415T +Wales/PHWC-29E43/2020|20-04-04 G9220A +402 C25350T +England/LOND-D3534/2020|20-03-27 T27280C +England/PHEC-20C24/2020|20-04-21 C3096T,G3939A,G8179T +403 T17835C +England/CAMB-7D2EA/2020|20-04-06 G26273T,C26408T,C29370T +England/LIVE-A63E5/2020|20-03-18 G680T +404 A25575C +Wales/PHWC-260C8/2020|20-03-26 C12242T,C22264T +England/BRIS-12F969/2020|20-03-30 C96T,C4113T,G14857T +405 C14741T +England/PHEC-2083F/2020|20-04-13 A187G,A5650G,C25350T +Wales/PHWC-16C6F0/2020|20-06-09 T8944C,G25552T +406 A1610G,C9344T,C13335T,C28887T +England/QEUH-B2DD0B/2020|20-11-03 G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G +England/MILK-A7B0BB/2020|20-10-14 C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T +407 C5506T,G14241T +Wales/PHWC-27461/2020|20-03-31 C19374T +Wales/PHWC-29F13/2020|20-04-01 C19151T,G23612A +408 T7438C,C29353T +AUS/VIC989/2020|MT451674.1|20-03-31 A26864G,C27630T +AUS/VIC1056/2020|MT451723.1|20-04-03 A21944T +409 A187G +410 C16017T,T27212C,G27561T +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 C16393T,G18546T,C24718A,C27600T,C29421T +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 A10770G +411 C19066A +England/BRIS-12B2BD/2020|20-05-02 A1699G,C6361T,C25797T,C27577T,C27641T +England/BRIS-128DCE/2020|20-04-14 C12213T +412 G14580T +England/LIVE-A65EF/2020|20-03-19 G10523C +Wales/PHWC-2B7CE/2020|20-04-12 C9857T,G28903C +413 A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +IND/GBRC238b/2020|MT676367.1|20-06-12 T18877C,C22444T,C28887T,T29750C +IND/GBRC209a/2020|MT664202.1|20-06-11 G25563T +414 C1884T,T26497C +Scotland/GCVR-1725BE/2020|20-04-04 C6730T,G28001T +Scotland/CVR30/2020|20-03-13 +415 G4866T,C14425A +IND/GBRC99/2020|MT509504.1|20-05-06 A21511G +IND/GBRC31/2020|MT467247.1|20-04-29 C3737T,C12710T,T21890C +416 C6723T,T26094C +AUS/VIC1239/2020|MT451821.1|20-04-02 G28476T +AUS/VIC1282/2020|MW153048.1|20-04-08 G6650T,T7034C,T18974G +417 C4084T +IND/GBRC128/2020|MT539172.1|20-05-02 G5572T +IND/GBRC123/2020|MT539176.1|20-05-02 G5194T,C22326T +418 A544G,C17104T +POL/PL_MCB_32/2020|MW273814.1|20-04-22 C1594T,A3090T,C23635T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +419 G20275A +England/CAMB-7BED9/2020|20-04-04 A6672G,C10641T +Netherlands/NA_302/2020|LR878041.1|20-04-01 A3058G +420 C13862T,C28836T +England/NORT-289814/2020|20-04-01 C9165T,T21033C +England/ALDP-9ED57A/2020|20-05-08 A23796G,G23824T,C29095T +421 G2282A,T9742C,C17639T +USA/WI-UW-1385/2020|MW035549.1|20-09-06 C18508T,G19174T,G24883T,C26370T,C28868T +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 G20160T +422 C28603T,G28899T +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 C10279T,C12132T,T16077C,T20401C +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 A2104G,T21656C,G25244C +423 C23422T,T23849C,C29686T +Scotland/CVR129/2020|20-03-13 G29227A +Scotland/CVR52/2020|20-03-14 C25667T +424 G3338T,C3511T,A22301G,G29508A +England/ALDP-94D8D9/2020|20-06-20 C19698T,C27393T +England/ALDP-9442D4/2020|20-06-07 T3616A,T23686C,T27634C +425 G29422T +Northern_Ireland/NIRE-1022CB/2020|20-03-25 C1997T,C28708T +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 C2509T,G12311T,C12357T,C20148T,C27925A +426 G28882A,G28883C +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 T241C +427 G28881A +428 C28887T +GRC/202_32984/2020|MT459870.1|20-03-12 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/CAMC-947875/2020|20-07-13 G25699T,G28884T,C28896T,C29738T +429 T19839C +England/PORT-2D3B4F/2020|20-04-18 C17410T,C18788T,G21830C,C27688T,G29742T +England/EXET-136EE8/2020|20-04-20 C4784T,C15720T,C23664T +430 G3242A,G8120C,C21646T,A24205T,G28083T +Northern_Ireland/NIRE-FB967/2020|20-08-17 C4927T,C15738T,C27527T +England/QEUH-7A4BBB/2020|20-07-14 C2511T +431 G242T,C18086T +USA/WA-S2264/2020|MT831437.1|20-06-09 T242G,C5020T +USA/WA-S1922/2020|MT831459.1|20-06-03 C12528A +432 G25552T +433 G11801A +Wales/PHWC-360A7/2020|20-04-29 T4330C,T24063C +Wales/PHWC-260AA/2020|20-03-24 T7168C +434 A26332G,A28877T,G28878C +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 G27670T +435 G10262A,C22995T,A27669G +England/CAMB-83FF9/2020|20-04-25 C8290T,C12242T +England/CAMB-75895/2020|20-03-18 C4965T,C8956T +436 C28256T,C29784T +USA/WA-S2012/2020|MT831128.1|20-06-04 T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T +USA/WA-S1775/2020|MT834200.1|20-06-01 G13513A +437 C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +England/ALDP-B82A0D/2020|20-11-14 C4456T +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 G8015A,C9803T,C25797T +439 A11839G +England/LOND-D6EBE/2020|20-04-03 C8293T,C16575T +England/SHEF-C88A2/2020|20-04-21 T3037C,C5878T,C7735T,C10645T +440 A23756G +USA/WA-S860/2020|MT642111.1|20-04-24 C4886T,C16178T +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C +441 C28905T +England/QEUH-A0AFB4/2020|20-10-01 G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C +England/ALDP-C48747/2020|20-12-12 G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C +442 C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T +444 C6573T +445 T2537G,G12191T,T16479C +Switzerland/230051/2020|LR882355.1|20-08-04 T7396C,C14120T,G25471T +Wales/MILK-9C729D/2020|20-09-12 A6659G,C6883T,C13261T,C15774T +446 C25528T +England/BRIS-12A70A/2020|20-05-01 C21077T +England/CAMB-77F61/2020|20-04-01 G22299A +447 C18115T +England/PHEC-215FB/2020|20-04-29 A5855G,C18110T,A27277G +England/PHEC-1B7C1/2020|20-04-08 +448 C27046T +Switzerland/120182/2020|LR860799.1|20-04-27 G13897T,C24621T,T26038C,G26550A,T27046C +England/ALDP-9545BA/2020|20-06-17 T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C +449 T27264G +England/ALDP-651C9D/2020|20-07-04 C3698T,A28765T +Scotland/CVR3919/2020|20-06-21 A22330G +450 C1800A,C23854T,G25972A,G27842T +England/ALDP-9558ED/2020|20-06-12 G2398A +England/NORT-286255/2020|20-09-16 C5000T,C13883T,C18395T +451 T11638C +England/BRIS-12F78D/2020|20-03-10 C25584A +Switzerland/100802/2020|LR824314.1|20-03-25 C8389T,C29708T +452 C17678T +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 T3745C +453 C21597T,C29144T +PHL/UPMNIH_C1/2020|MW243995.1|20-07 C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T +PHL/COVID-6009/2020|MT919790.1|20-07-18 C3736T,T10771C,C13051T,C26305T +454 C1912T +England/PHEC-20E4C/2020|20-04-16 C7200T,C8290T +England/NORT-283B7B/2020|20-04-02 T28118C,G29227A +455 C9430T +England/ALDP-95665B/2020|20-06-08 G571A,G9575A,C10074T +England/CAMB-7767B/2020|20-03-31 C23802T,C28045T +456 T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +457 T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T +458 G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +England/MILK-A79D10/2020|20-10-15 C4113T,T17214C,C19324A,G28044T +England/PHEC-148F95/2020|20-10-15 C2644T,C9319T,G13348T,C19113A +459 T4711C,A6709G +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 C2842T,C18570T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 C17125T +460 G5539A,G21468A +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 T1937C,A15820G,T22441G +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 C6578T,C16049T,G19872C,C26768T +461 C936T,G3259T +USA/VA-DCLS-1485/2020|MW205988.1|20-07 C8326T,G21641T,C26681T +USA/VA-DCLS-1212/2020|MW067767.1|20-06 A20860G,C28087T +462 C673T +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 C379T,T4125C,C14220T,T25479A +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +463 G9130T,T27319C,G28487A,C28868T +Switzerland/250060/2020|LR881882.1|20-08-18 G1186A,C3738T,C16111T,G29706T +England/QEUH-A77F0D/2020|20-10-12 C6091T,G9389A,G12845A,C18713T,G24095T,G25249T +464 G443A,G28378T +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 C21614T,C21855T,T23042C +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 T6579C +465 G24781T,G29706T +466 A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +England/QEUH-9AE4E1/2020|20-09-01 C18267T,G29736T +England/MILK-A180DE/2020|20-10-01 A4764G,C21952T,G26257A +England/OXON-AEBC7/2020|20-04-12 C9430T +467 C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +England/QEUH-96E27A/2020|20-08-20 C936T,G25785T,G28857T +England/MILK-74C001/2020|20-06-29 C21789T,G29779T +468 C9438T,G29777T +England/LOND-D4C6B/2020|20-04-15 A8681G,C10369T +Wales/PHWC-164485/2020|20-05-02 A16653G +469 G922T,C6541T,C19983T +England/ALDP-5C701F/2020|20-06-19 T1863C,T19983C +England/ALDP-51F142/2020|20-06-02 +470 C3170T,C6336T,C27673T +England/ALDP-955FAC/2020|20-06-08 A2130T,C11572T,C19961T,G20006T,C25207T +England/ALDP-49E391/2020|20-05-20 T26260G +471 C6781T,C11916T,C19185T +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 A16920G,G25906T +472 C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +England/LOND-126DFA5/2020|20-12-27 C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T +Wales/PHWC-4846A4/2020|20-10-24 C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T +473 C10376T,C26208T +Northern_Ireland/NIRE-10677D/2020|20-05-14 G18148A +Northern_Ireland/NIRE-106740/2020|20-05-14 C11259T,C26681T +474 C26447T +England/SHEF-C9FBB/2020|20-04-11 C1190T,A25410C,C25831T,T26447C +England/LOND-D6531/2020|20-04-22 C2710T,T2872C,C3041A +475 A27932G,G29705T +England/MILK-9705F4/2020|20-08-18 C15045T +England/ALDP-9B6440/2020|20-08-28 +476 G25088T +477 A6319G,T26149C +England/MILK-99D597/2020|20-08-30 C6629T,C15720T,G27877T,G27996T,A29424T,G29688A +478 T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T +Scotland/EDB6515/2020|20-06-15 +479 C12053T +480 C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +England/NORW-222D0F/2020|20-12-20 C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T +England/MILK-F72F49/2021|21-01-05 C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T +481 T22020C,G23628T,C25728T,G26063T +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 G2155T,C6541T,C10029T,C20844T,A24775C,G28914T +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 C6541T,C6606T,G11926A,G27933T,G27990A +482 C24904T,T25088G +England/NORW-EE34B/2020|20-03-24 G18315A +England/NORW-E8693/2020|20-04-16 C1348T,C3653T +483 T772C,A2869G,C10868T,G15652T,C29095T +England/QEUH-AD487C/2020|20-10-26 C186T,C12025T,C28819T +England/QEUH-9B7B2C/2020|20-09-03 T14313C,G23438T +484 A11782G,T21570G,T25473C +Switzerland/250070/2020|LR881870.1|20-08-18 C512T,T28297C +England/QEUH-9B5344/2020|20-09-02 C27641T,G28913T +485 A2576T,C5175T,C6401T +England/ALDP-6839B9/2020|20-07-02 A27691T +England/ALDP-6BAB59/2020|20-06-29 C11620T,C22993T +486 C1427T +FRA/Env-Di/2020|MT709105.1|20-05-14 G3419A,G3871T,C13517T +AUS/VIC1786/2020|MT612326.1|20-05-27 C6195T,C10969T,T17568C,G20679T,T28098C,C29722T +487 C12809T +England/CAMB-7620F/2020|20-03-30 C4876T,T12809C +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 C4795T,C29171T +488 C1471T +Scotland/QEUH-96C6AD/2020|20-08-07 C19524T,C20759T,G25088T,C26912T,C28292A,C29739T +Switzerland/270108/2020|LR882077.1|20-09-03 G2782T,C15251A,C21034T,C21590T,G23302A +489 G25912T +England/PHEC-1DF03/2020|20-04-08 C18568T,G24348T +England/CAMB-1AB21F/2020|20-04-18 C6385T,C12880T +490 T22843C +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 T28010A,T28127C +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 C18652T +491 G3323T,C10369T,G18674A +England/QEUH-9DE381/2020|20-09-21 C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G +England/QEUH-95E7D8/2020|20-08-06 C14177T,C25553T,C28121T +492 A2526C,C10440T,T25316C +England/NOTT-111E3E/2020|20-06-10 G199T,C9474T,C17163T,G25186T,G29688T +England/NOTT-111117/2020|20-05-03 +493 T13827C,G18756T +England/ALDP-68EFBC/2020|20-07-02 C23430T +England/ALDP-91F278/2020|20-06-23 A5695G,C10116T,C23855T +494 C4113T,G21974C,C23191T +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 C1347T,C6190T,C11758T,C12741T +USA/WI-UW-1202/2020|MW035373.1|20-08-06 C23910T,G27327T,G28690T +495 G3230A,T24076A +England/PHEC-16F19/2020|20-03-31 C4570A +England/GSTT-265D4DF/2020|20-03-19 +496 C4391A,C15848T,T19893C +England/LIVE-A2765/2020|20-05-20 C16084T,C19185T,C26625T +England/ALDP-658C87/2020|20-07-03 C1263T,G19254T,C25889T +497 C1420T +Northern_Ireland/NIRE-1038B9/2020|20-04-16 G25947C,C28312T +Northern_Ireland/NIRE-FCE85/2020|20-04-28 C12747T,G18028T +498 C19366T +Northern_Ireland/NIRE-FBB52/2020|20-04-13 C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 C6114T +499 G10097A,C23731T +England/NORT-283BE4/2020|20-04-03 C24026T +500 C4002T,C13536T +England/CAMB-81070/2020|20-04-20 C4698T +501 T28110C +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +502 G2447T,G22199T +England/ALDP-94DD07/2020|20-06-19 G3164T,C7528T,G20569T,C29625T +England/ALDP-49EC3C/2020|20-05-20 G29392T,C29541T +503 G29179T +PER/covper024/2020|MW030255.1|20-07-04 C17436T,G27478T +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 A10323G,G27160T +504 A21131G +PER/covper011/2020|MW030242.1|20-07-04 C3768T,C14265T,G17721T,C27213T,C27513T +PER/covper040/2020|MW030271.1|20-05-05 C12854T,G20752T +505 C18747T +England/MILK-B1553B/2020|20-10-23 C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A +England/MILK-66F889/2020|20-07-03 G14547A,G14869A,A24879G,C29421T +508 T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +England/QEUH-96BAA2/2020|20-08-14 G1042T,C8895T,G25250T +Wales/ALDP-B19FFD/2020|20-11-01 G922T,T10369C,A23064C,G23608T,C28453T,C29642T +509 G24794T +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +PER/covper018/2020|MW030249.1|20-07-03 G3755T,G11552T,A28356G +510 C15656T,C25936T +DK/AD3_Farm1/2020|MT919525.1|20-06-14 A5421G,A22920T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +511 A1630C,C27679T +England/BRIS-123EDF/2020|20-04-08 C2509T +England/BRIS-123F09/2020|20-04-08 C9118T +512 C3373A,C15960T +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T +513 T15960C +514 C2706T,G9968T,G16647T,T23480G +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +Scotland/CVR41/2020|20-03-13 C823T +518 C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +England/CAMC-C3E586/2020|20-12-10 C3736T,C6336T,G19735T,G23611T,C26735T,C26858T +England/CAMC-DE5550/2020|20-12-29 G6320T,C10582T,C12194T,C25603T +519 C1437T,G29745T +England/ALDP-9ECEAD/2020|20-05-05 C3874T,A6659G,T8008C,C27944T +England/BRIS-12DC53/2020|20-05-02 G4720A,A4928T +520 C2062T,C5184A,C13887T,C18687T,C23248T +Scotland/QEUH-7B078B/2020|20-07-19 G14055T,C19269T +England/MILK-993EA5/2020|20-08-22 C10252T,C16733T,G25595T +521 C313T +England/BRIS-124C89/2020|20-03-26 T313C,C29119T,C29585T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 C3096T +522 G4510A +523 G15438T,G25785T +England/ALDP-A525BB/2020|20-10-07 C1758T,G18337T,G24757T,G28903T,G29260T +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 C541T,C1528T,C2836T,C8905T,A23125T,G28851T +524 G19480A +England/MILK-A45AF8/2020|20-10-06 G18985T,C21844T,T23084C,C25318T,G27358T +Scotland/QEUH-A613BF/2020|20-10-13 C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T +525 C9286T +526 C19763T +Switzerland/180039/2020|LR861669.1|20-07-01 C1912T,C10252T,C14178T +Switzerland/220022/2020|LR882244.1|20-07-27 C2062T,G6877T,T8082C,C13945T,C22687T +527 T4346C,C10376T,C14708T,C28725T,G29692T +Japan/TKYE627000_2020/2020|LC593811.1|20-08 C7728T +Japan/TKYE624705_2020/2020|LC593810.1|20-07 A158G,C706T,C5974T,A26459G +529 G28396A +England/QEUH-9F9265/2020|20-09-26 C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T +England/QEUH-98EE43/2020|20-08-25 C2453T,G22918T,G27708T +530 G1820A,C6541T +England/NORW-E8709/2020|20-04-18 A9737G,A29242G +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 A3740G,C12786T,C26333T +531 A11348G +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 G28690T +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 G2534T,G9130A,G29422A +532 C5700A +England/QEUH-9600C9/2020|20-08-05 C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T +England/QEUH-9B92F8/2020|20-09-07 C245T,G3250T,C11020T,C11109T,G16377T,C27874T +533 T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +IND/GBRC455b/2020|MW600453.1|20-12-24 G160T,T313C +IND/GBRC455a/2020|MW600436.1|20-12-24 G160T +534 C823T +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 A8565C,A28847T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 A11023G +535 C27128T +England/CAMB-76490/2020|20-03-30 G8171A,A16541G,A17730G +England/CAMB-7CBD1/2020|20-04-05 G960T,G26589C +Japan/TKYE630414_2020/2020|LC593818.1|20-08 C8917T,C18167T,G21518T,G27604A,G28975T,C29679T +537 G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +England/MILK-A18C8F/2020|20-10-03 +England/ALDP-C3C1FD/2020|20-12-10 C19264T,T22672C,A23869G,T28340C +538 G22627A,G28628T +Wales/PHWC-15E0B7/2020|20-05-13 C1063T,G16117T,C27849T +Wales/PHWC-30957/2020|20-04-08 T11654C +539 G25563C,G28178T +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 G20134T,C24621A,G28300T +LC573289.2|20-06 G2305T +540 C2509T,C14724T,G24262T,G27703T +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 G5015A +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 G4148T,G5015A,C13620T,G28166A +541 T27645A,G27666A +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 C5979T,G29648T +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 T14127C,T14745G,G19180T,G22154T +542 T29148C +543 G25793T,T27299C +544 T25793G +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 C28969T +USA/WI-UW-114/2020|MT706234.1|20-03-30 A14330G,A27989G +545 C25916T,C29769T +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 T28360C +546 A2475G +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 C14805T +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 C11750T,C18183T,C25731T +547 G26416T +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 C2044T,C10626T,C11824T,A22052C,C26645T,C29555T +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 C1663T,G3155T,A4485G,C5493T,G14020T,C27431T +England/CAMB-74D5B/2020|20-03-19 +England/LOND-D53CF/2020|20-04-15 G621A +548 G18907T +549 G18898T +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 G1323T,T18907G,C21772T +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 C823T,C1457T,G3304T,A20055G,C22208T,C29095T +550 C22314T,T24796C +Wales/PHWC-1645BF/2020|20-05-06 C5192T,C12400T,C25710T,C28432T +Wales/PHWC-33C88/2020|20-04-17 G6358A,A14328G,G29736A +551 G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +552 G26615T +Scotland/EDB5196/2020|20-05-18 C13384T,A18902C,C27644A,A29767C +Scotland/CVR3185/2020|20-04-28 C16946T +553 C17249T,G17722T +England/BRIS-127363/2020|20-04-24 G174T,G5572T,G12202T,T16521C +England/BRIS-127A40/2020|20-04-17 G2659T +554 A10260G,A10880G +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 G16197T,C24382T +England/MILK-99DE32/2020|20-08-31 C2880T,A4044C,C6896T,A8413G,G19086T +555 G2164A +England/CAMB-83A9E/2020|20-04-15 G7761A,C14931T +England/EXET-136ED9/2020|20-04-22 C8733T +556 G3896T +England/ALDP-955D39/2020|20-06-12 G5629T,G19889T,C27673T +Switzerland/300258/2020|LR898536.1|20-10-01 C6701T,C12116T,C14352T,G17334T +557 C18713T +England/SHEF-D1D3E/2020|20-04-22 C21618T,C25047T,C29095T,G29747T +England/SHEF-CBE43/2020|20-04-26 C11396T,C17676T +559 A8072G +England/ALDP-90D6AE/2020|20-06-24 A3776G,C21855T,G25166C,C25831T,C26111T,C26195T +POL/PL_P12/2020|MT511068.1|20-03-31 C106T,C8025T +560 T3873C,G3880A +England/MILK-ABBCCA/2020|20-10-21 A14144G,T20196C,C23536A +England/MILK-ACCF27/2020|20-10-21 C18131T,G26640T +561 C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +England/QEUH-99923A/2020|20-08-24 G974A,C7267T +England/MILK-825C54/2020|20-07-16 G680A,C14120T +562 A20742C +England/MILK-9E2BDD/2020|20-09-20 A9337G,A27086T +Northern_Ireland/NIRE-1088C3/2020|20-09-13 C16260T,G25340T,C27684T +564 G569A,C5482T,G17944T,C18747T,A22182G +England/ALDP-907D09/2020|20-06-22 C20320T +England/MILK-85E3E4/2020|20-07-18 G2144T +565 A2641G,C3622T,C25844T,C28087T +England/MILK-95862C/2020|20-06-11 G28557T +England/ALDP-94EF88/2020|20-06-16 C2106T,C12073T,C14676T,T20989C +566 G21624T +England/PHEC-219E0/2020|20-05-01 T23227C +England/LEED-2AA59E/2020|20-04-06 C28969T +567 T5465C,G24102A +Wales/PHWC-16578B/2020|20-06-07 A489G,G6387A,C19185T,A25800T,A25801T +Wales/PHWC-166104/2020|20-05-15 T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T +568 G18859T +England/BRIS-125D67/2020|20-03-29 C6347T +England/BRIS-12C841/2020|20-05-12 A14691G,T19473C,T22325C +569 G1874T,C8683T,C28093T +England/ALDP-94D8F7/2020|20-06-20 A9997C +England/NOTT-111BFB/2020|20-05-29 G26426A +570 A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +England/ALDP-95A754/2020|20-06-13 T20764C +England/ALDP-95CEA8/2020|20-06-15 C14931T +571 T29464C +572 G26918T +England/MILK-8664D7/2020|20-07-17 C29733T +England/MILK-993300/2020|20-08-26 C8290T,C19367T,C23525T +England/MILK-629D13/2020|20-07-05 G1820A,C11003T,T13417C,G22409T,C25896T,G25963A +574 G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +England/PORT-2F5752/2020|20-10-13 C18329T,G20062T,C23185T +England/QEUH-96A4C3/2020|20-08-13 G3403T,C5691T +575 A10948G +576 T9172C,G26730T +USA/VA-DCLS-1073/2020|MT981458.1|20-06 T27846C,C29171T +USA/VA-DCLS-0120/2020|MT482111.1|20-04 C10818T,C21998T +577 C6312A +Wales/PHWC-162751/2020|20-05-27 G18538T,A20136G +England/ALDP-497D12/2020|20-06-03 T3334A,A6375G,G24926T,C25665T +578 G20931A +England/SHEF-C13B7/2020|20-05-19 G10870T,C15315T +England/SHEF-10B2E79/2020|20-05-16 A9272C,G26416T +579 C6582T +England/OXON-AEF9E/2020|20-04-07 C140T,T6582A +Wales/PHWC-162E7A/2020|20-05-19 C5497T +580 C12488T,C25528T,G27084A +USA/WI-UW-982/2020|MT846668.1|20-07-21 G17964T,G22801T +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 A22108G,C28344T +581 A25505C +USA/FL-QDX-228/2020|MT806770.1|20-04-18 G675T,C4456T,A21625G +USA/VA-DCLS-0920/2020|MT929088.1|20-05 C8664A,G8851A,C19983T,G29755T +582 C21637T,A28169G +England/ALDP-71D072/2020|20-07-01 T26156C +England/MILK-9573DB/2020|20-06-10 T9292C,C21910T +583 G25617T +England/ALDP-954C6A/2020|20-06-13 G27857T +England/ALDP-A524EB/2020|20-10-07 C3099T,C17678T,G19816A,C25728T +584 G1590T,A11120G +England/ALDP-9D9104/2020|20-09-18 C2462A,C10615T,G27047T +England/CAMC-A40F67/2020|20-10-06 A12529G +585 G11230T,G11401T,T24088C +Scotland/QEUH-A00DF0/2020|20-10-02 A11546G,C29730G +England/ALDP-9CC5BD/2020|20-09-15 C11224T,G28307C +586 C835T +England/QEUH-9B6EAC/2020|20-09-09 A29700G +England/NORT-2A4CAE/2020|20-09-17 C27945T +587 A6900G +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 A3801G,C26985T +Northern_Ireland/NIRE-FB369/2020|20-08-31 G25456T +588 C2638T +Wales/ALDP-6C3E72/2020|20-07-01 C13329T,C29675T +England/ALDP-5A15D0/2020|20-06-14 G6589A,A22528G +589 G21724T +590 G11230T,G23587C +England/LEED-2AA4EC/2020|20-04-06 C22326T,C27128T +England/LEED-2AA394/2020|20-03-31 C20941T +591 T7792C +England/BRIS-1854318/2020|20-04-28 C4780T,G22468T +England/BRIS-12E6FA/2020|20-04-20 C14676T,C17119T +592 G17302T,C25046T +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 A5277G +593 C222T,C21780T +Wales/PHWC-16881C/2020|20-04-21 C19602T,G29779A +Wales/PHWC-3612C/2020|20-04-28 C7932T,C8964T,C13274T,C14097T +594 C20474T +England/PHEC-20B81/2020|20-04-16 +England/MILK-992E97/2020|20-08-26 A5128G,T6376A,C16329T,G25012A,C25728T,C27509T +595 T3163C +England/QEUH-95DD9B/2020|20-08-07 C2113T,T27856G +England/MILK-9570D4/2020|20-06-10 C7768T +596 C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 C4551T,G20238T +DV_IZSPB_236_S50|LR992121.1|20-08-29 +597 G1210T,G9802T,G12067T +England/SHEF-C184F/2020|20-08-31 G12907A,C13667T,C22450T,G25687A,T29785A +England/ALDP-9D8FFC/2020|20-09-18 T20613C +598 C3177T,G22093A +England/NORT-28B1EA/2020|20-04-18 C27741T +England/NORT-28B28D/2020|20-04-18 A8734G +599 G10265A +600 T13794G +England/ALDP-5D52BE/2020|20-06-18 T28494C +England/ALDP-6FAF24/2020|20-06-29 C6633T,C19862T +601 A15972G,C19718T,T28759C +England/MILK-B01F25/2020|20-10-23 C1722T,T3843C,G4300T,A4819G,C10277T,C15720T,C16114T,C17172T,A25351T,C27612T,A29031T,C29555T +Switzerland/210050/2020|LR882268.1|20-07-19 C203T,T3095C,C12880T,C23896T,C25831T,G28077T,C28603T +602 A23207G +England/ALDP-691499/2020|20-07-02 C8650T,A21177G,C28603T +England/ALDP-4A2BFC/2020|20-05-22 A20826G +603 A19650G +England/ALDP-9B5BC4/2020|20-08-28 A9433T,G11837T,C18807T,C21595T,A22024C,C22096T,C25546T +England/ALDP-49F5B8/2020|20-05-22 T21368C +604 C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +England/MILK-62FD59/2020|20-07-05 T17313C,C17502T,C20320T +England/ALDP-90DDC7/2020|20-06-26 G488T,C1514T,C18744T +605 C815T,C3411T,G25437T +USA/IL-UW-1082/2020|MT929034.1|20-07-27 C2388T,G19656A,C26527T +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 T10795C,C12374T,C18452T,G25775T,C28153T +606 C11620T +England/LIVE-9BC33/2020|20-04-21 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 C4540T,C28006T +607 C1170T +England/CAMB-1B087F/2020|20-05-04 T8416C,C11379T,C16178T,G27651C +England/PHEC-2223F/2020|20-04-30 C2488T,T7582C,C13671T +608 T3154C +England/ALDP-5A2A49/2020|20-06-14 C18981T +England/ALDP-5A2D6E/2020|20-06-14 T15231C,G19670A,G25687T +609 G16813A +USA/WA-S1407/2020|MT821568.1|20-05-19 T6023C,C19041T,A21312G,C28312T +USA/WA-S1434/2020|MT821707.1|20-05-21 C8802T +610 C6445T,G16852T +USA/WA-S2598/2020|MT831859.1|20-06-18 G29254T +USA/WA-S1840/2020|MT834024.1|20-05-27 T5335C,G14186A,C27059T +611 A5538T,T25783C +USA/WA-S1246/2020|MT821587.1|20-05-11 C10408T,T21802C,C26022T,C27059T +USA/WA-S820/2020|MT641503.1|20-04-15 G17261A +612 G27281T +England/CAMB-80B43/2020|20-04-11 C2334T,C23121T +England/CAMB-7666D/2020|20-03-29 G10870T,C21614T +613 G18803T,A22606G +USA/WA-S2573/2020|MT831840.1|20-06-17 +USA/WA-S2761/2020|MT947580.1|20-07-29 A5101G,A9830G,A12358T,G25922T +614 C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +England/ALDP-9BEB16/2020|20-09-09 G14428T +England/ALDP-A95376/2020|20-10-19 A9436T,C15848T,C17550T,G26153T +615 G11447A,C21648T +England/QEUH-A9F5D0/2020|20-10-20 C5717T,C10138T,C12559T,A19098G,C24130T +England/QEUH-96AEF2/2020|20-08-15 G7037T,C12488T +616 C19170T,G19509A +Scotland/CVR1557/2020|20-04-03 G23401T +Wales/PHWC-34610/2020|20-04-21 G16014A +617 C26313T +Netherlands/NA_436/2020|LR883367.1|20-04-07 G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 C4824T +621 A1163T +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 C19273T +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 G15260T,G26268T +622 C7600T,G7798T,T23548C +AUS/VIC3114/2020|MT972550.1|20-07-06 C24912T,T27484C +AUS/VIC9664/2020|MW156172.1|20-08-12 C506T,G29072T +623 T7540C,G16647T,G22992A,G23401A +AUS/VIC13094/2020|MW185501.1|20-07-31 G6662A +624 C18555T,C22987T +AUS/VIC9179/2020|MW153248.1|20-08-21 G1338C,C5691T,A11425T,C20089T +AUS/VIC11646/2020|MW155572.1|20-07-22 G6617T +625 C19488T +England/CAMB-82060/2020|20-04-21 C5575T,A5991G,C13329T +England/CAMB-82E1B/2020|20-04-14 A8374T +627 A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +England/CAMC-947259/2020|20-07-21 +England/MILK-9927C9/2020|20-08-27 T595C,G2659T,G15773A,C21789T,G24197T,G26172T +628 A11869G,T27484C +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 G29422T +629 C2399T +Scotland/EDB300/2020|20-03-29 C15240T +Scotland/CVR3194/2020|20-04-28 C10335T,A11430G,G19117T,G25429A,A27232G,C28940T +630 T4149C,C12525T,G25599T +England/CAMB-1AA438/2020|20-04-17 +England/CAMB-1AFB7A/2020|20-05-02 C6016T,A8031G,C29353T +632 T1543A,T4369C,T22020C,C27911T +England/MILK-9C4087/2020|20-09-09 C1938T +England/QEUH-96F349/2020|20-08-17 G21606T,C21910T,T21976C,G28230T +633 T15978C,G24794T +England/BIRM-5FC3B/2020|20-05-28 A8390G,C18676T,C19366T,C28311T,G29764A +England/PHEC-13ADF/2020|20-03-13 +634 C8917T +England/BIRM-6529A/2020|20-09-30 C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T +USA/WA-S2831/2020|MW077478.1|20-09-08 C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C +635 G27996T +England/NORT-282796/2020|20-03-28 A1755G,C15824T +England/NORT-2839AE/2020|20-04-01 G29315T,G29468C +636 C527T,C1962T,C7735T,T23255C,A28065C +England/ALDP-951E49/2020|20-06-10 C16045T,C28732T +England/ALDP-9557A4/2020|20-06-12 C19454T,T19538C +637 G21255C,G28960T +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 C21364T,C26625T,C28744T +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 C21205T +638 C5700A +IND/GBRC203a/2020|MT669321.1|20-06-07 A2292C,C2836T,G25563T,C29750T +USA/WA-S2809/2020|MW077484.1|20-08-31 C313T,C1489T,G3287T,C9693T,C10815T,C15346A,C16626T,C25728T,G29474T,C29750T +639 G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +England/QEUH-96E025/2020|20-08-18 T1088C,C20736T +Scotland/QEUH-94375E/2020|20-08-02 G25785T +640 A20288G,C21721T,C26894T,C28638A +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 C478T,T2698C,G16068T,G16935T,G20679A,G29227T +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 G2635A,T7426C,A23234G +641 T3615C,G22256T,C23802T,A27403T,C27741T +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +642 C20233T,C22210T +Switzerland/220001/2020|LR882220.1|20-07-24 G94T,C5365T,C13708A,A26097G,G28003T +England/BIRM-6BECD/2020|20-11-17 G1738T,G4960T,A15477G,C22858T,C23705T,T25312C,C26681T,G27762C,G28056A,G28085T,C28603T,G29449A +643 A23063T +England/CAMC-946506/2020|20-07-15 C913T,C6636T,G21800T,C27972T,G28048T +AUS/VIC2173/2020|MT972184.1|20-06-24 G10540A,C26984T,T28196C +644 G596T,T18231C +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 T3127C +645 T10513C,T27851C,C29541T,C29739T +England/ALDP-94A63C/2020|20-06-11 A7291G,C7423T,C9979T,C26447T,C29077T +England/ALDP-52A636/2020|20-06-01 A2756G,C17550T +646 C16101T +England/SHEF-D1CE6/2020|20-04-28 C5339T,A29571T,C29572T,G29573A +England/SHEF-C0F96/2020|20-04-15 G12514T,A18616G,C28256T,G29779C +647 C21302T,C21304A,G21305A,G28884T +England/QEUH-B10460/2020|20-11-02 A15753G,A19655G,G27798T +Scotland/QEUH-96D5CD/2020|20-08-20 C4655T,G5305A,A5958G,C28887T +648 G5950T,C19164T,A21137G,T27447C,T29661C +ZW-6983|LR963462.1|20-05-01 C10341T +ZW-6978|LR963455.1|20-05-01 A13833G +649 A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 C28720T +England/MILK-1169960/2021|21-01-25 T4895C,C9072T,G20578A,G23948C,C24382T,G28209T,A28271G,C29769T +650 G5924A,T21775G +England/ALDP-952A44/2020|20-06-21 G16852T,G18984T +England/QEUH-9B4A22/2020|20-09-07 G2885A,C15026T,G17427T,G19635T,C21846T +651 C7095T,A16179G +Netherlands/NA_359/2020|LR883961.1|20-04-07 C13502T +Netherlands/NA_589/2020|LR883868.1|20-04-05 C21588T,G25012T +652 G4207T,A4208C,G11842T +England/CAMB-1AE7FF/2020|20-04-29 C6033T +England/CAMB-762D2/2020|20-03-28 C14757T,G16072T,A19743C,C22498T +653 G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +England/ALDP-BCA4B0/2020|20-11-23 +England/ALDP-119985B/2021|21-01-27 G7319A,G26526T,C27213T +654 C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +USA/WA-S1222/2020|MT821613.1|20-05-08 C186T +USA/WA-S1655/2020|MT834136.1|20-05-29 C15240T,C26607T +657 G20980A +USA/FHCRC-19442/2020|MW593677.1|20-07-30 T5028C,C8818T,G9398T,C15952T +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 A1005G,T6407A,G20476T +658 T241C,G1440A,G2891A +England/CAMB-7772D/2020|20-03-31 C4668T,C21742T,C25931A +England/BRIS-12208F/2020|20-03-21 C14585T,C27603T +659 G28851T +Wales/PHWC-31CB7/2020|20-04-14 C9180T,C16466T,G19670A +Wales/PHWC-26D2B/2020|20-03-30 C5183T,G18651T +660 A14940G +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 A26120G +661 A1904G,C8090T,C10789T +Scotland/GCVR-171160/2020|20-03-26 A3958G,C5826T,C17074T +England/BRIS-130E2A/2020|20-03-24 C16658A,C17733T +662 T514C +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 C22033A +NED/NB02_13KS/2020|MT457397.1|20-04-29 G1607A,A10829G,G12795A,C17410T,A22920T +663 A12557G,C24904T,A27359G +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 C11050T +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 C25916T,G29751T +664 C25692T +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 T15867A +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 G10617A,G22225T +665 G29032A +England/BRIS-1258A2/2020|20-03-29 C6696T,C9096T,C29754T +England/SHEF-BFEBB/2020|20-03-24 C11747T,T24364G +666 C10277T +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 A6313G,T7191C,A7193G +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 G7273A +667 G29711T +668 C1218T,G27806T +England/ALDP-52C0FA/2020|20-06-01 C9870T,C10702T,T23047C +England/LIVE-9D7D6/2020|20-04-15 C27493T +669 A4838G,C7420T,C14937T,C20148T +USA/WI-UW-298/2020|MT706406.1|20-04-13 C7728T,C21637T +USA/WI-UW-314/2020|MT706422.1|20-04-16 G25907T +670 T2116A +USA/WI-UW-325/2020|MT706432.1|20-04-24 C12880T,C28854T +USA/WI-UW-290/2020|MT706398.1|20-04-08 A10070C,G28703C,C28849T +671 C28854T +672 C12710T +Scotland/CVR3488/2020|20-05-12 C10335T,C16428T,G22139C,C27737T +Scotland/CVR780/2020|20-03-27 C5997T +673 C11752T,C25665T,A27700G,T28854C,T28912C +Japan/TKYE63557_2020/2020|LC581365.1|20-03 C26447T +Japan/TKYE64688_2020/2020|LC581375.1|20-03 T1907G,C4456T,A10471G +674 C6312A,C13730T,C23929T,C28311T +USA/CA-QDX-33/2020|MT614459.1|20-03-15 C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 C11455T +675 C6310A,C19524T +MYS/188407/2020|MT372480.1|20-03-18 T25473C +AUS/VIC961/2020|MT451653.1|20-03-27 A9433G,T19035A,T29793C +676 C8782T,T28144C +677 A23403G,C26088T +678 G23403A +679 G9928T +Scotland/EDB5629/2020|20-03-24 G27870T +Scotland/EDB5040/2020|20-04-02 C593T +Scotland/EDB1824/2020|20-04-16 C8240T,T8941C,C9438T,C19185T,G27358T +Spain/H12_46/2020|LR884009.1|20-04-08 C7967T,C16694T +680 C3037T,A20268G +Spain/R11/2020|LR884126.1|20-03-06 T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 +HKG/HKU-904a/2020|MT365032.1|20-01-30 C4158T,C18828T +681 A17858G,C18060T +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 A7966G,A22422G +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 C4776T,C9491T,C17747T,G28086T +682 T9477A,C14805T,G25979T +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +683 C28863T +Spain/R10_33/2020|LR884127.1|20-03-02 T25979G +684 C28657T +685 C4540T +686 C25714T,C26029A +Scotland/CVR3062/2020|20-04-24 G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14 C15274T +687 C28311T +England/OXON-B0922/2020|20-03-28 C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31 G17632A +688 C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +USA/WA-S4100/2021|MW555971.1|21-01-18 G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19 C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +689 G22468T,G28878A,G29742A +690 T22468G +691 C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +England/ALDP-CB55B4/2020|20-12-20 C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21 G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +692 G16381A,T17877C,G25500T +USA/WI-UW-06/2020|MT772088.1|20-03-21 C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 C25854T +693 C24370T +GHA/34927_S20/2020|MT890226.1|20-05-23 C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24 C2306T,C5672T,C5986T,C13515T,G24926T +694 T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 A4984T,A7854G,A21062G,A28254C +695 A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 C6541T,C9988T,T25904C +696 G9802A,G11230T,A16512G,C19951T,G26428T +England/CAMC-C91F38/2020|20-12-11 C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 C10818T,T11230G,C25702T +697 T490A,C3177T,C24034T,T26729C,G28077C +USA/COVID20-0008/2020|MT764174.1|20-03-10 T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +698 C6696T +England/LIVE-9E66F/2020|20-04-10 C7765T,G10256T +Scotland/CVR705/2020|20-03-26 C11001T,G17122T +699 G1397A,T28688C,G29742T +England/PHEC-1A601/2020|20-03-04 A19526G +England/PHEC-2275E/2020|20-06-22 G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +700 A1079C,C9319T,C19862T,T27384C +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 C6701T,T7225C +701 C1076T +AUS/VIC1255/2020|MT451830.1|20-04-11 T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29 A28955T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_14_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,554 @@ +clade root_id from_tree_root +19A 1 +B 1 +B.26 4 > C7423T +B.48 5 > C20270T +B.15 8 > T4949C +B.5 9 > C29635T +B.54 10 > C14805T,G26144T +B.47 24 > A10982G +B.20 660 > A14940G +B.52 661 > A1904G,C8090T,C10789T +B.11 662 > T514C +B.46 663 > A12557G,C24904T,A27359G +B.1.14 664 > C25692T +B.27 665 > G29032A +B.19 666 > C10277T +B.6 674 > C6312A,C13730T,C23929T,C28311T +19B 676 > C8782T,T28144C +A 676 > C8782T,T28144C +B.10 698 > C6696T +B.4 699 > G1397A,T28688C,G29742T +B.23 6 > C20270T > A29683T +B.33 11 > C14805T,G26144T > T17247C +B.28 18 > C14805T,G26144T > G28842T +B.29 19 > C14805T,G26144T > C23707T +B.40 20 > C14805T,G26144T > A2480G,C2558T +B.30 21 > C14805T,G26144T > A4236G,T25655C +B.41 22 > C14805T,G26144T > G5572T +B.31 23 > C14805T,G26144T > G13627T,C15540T,A28338G +B.1 26 > C241T > C14408T +B.3 658 > C241T > T241C,G1440A,G2891A +B.18 668 > G29711T > C1218T,G27806T +B.13 669 > G29711T > A4838G,C7420T,C14937T,C20148T +B.51 670 > G29711T > T2116A +B.45 672 > C28854T > C12710T +B.12 673 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C +B.6.6 675 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T +A.1 681 > C8782T,T28144C > A17858G,C18060T +A.2 682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.3 697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.4 700 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C +B.4.5 701 > G1397A,T28688C,G29742T > C1076T +B.37 13 > C14805T,G26144T > T17247C > C8078T +B.35 14 > C14805T,G26144T > T17247C > A7479G,C25572T +B.32 15 > C14805T,G26144T > T17247C > A1587G +B.34 16 > C14805T,G26144T > T17247C > C988T +B.39 17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.3.1 659 > C241T > T241C,G1440A,G2891A > G28851T +A.5 678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +A.28 695 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +A.12 696 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T +20A 28 > C241T > C14408T > A23403G > C3037T +B.1.108 28 > C241T > C14408T > A23403G > C3037T +A.23.1 691 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +A.4 692 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T +A.11 693 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T +A.21 694 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +B.1.105 45 > C241T > C14408T > A23403G > C3037T > G28514T +B.1.152 46 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C +B.1.103 47 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T +B.1.188 48 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +B.1.378 49 > C241T > C14408T > A23403G > C3037T > G3871T +B.1.199 50 > C241T > C14408T > A23403G > C3037T > C2939T +B.1.139 51 > C241T > C14408T > A23403G > C3037T > A696C +B.1.91 52 > C241T > C14408T > A23403G > C3037T > G24077T +B.1.350 53 > C241T > C14408T > A23403G > C3037T > G25563T +B.1.216 267 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G +B.1.221 268 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.525 272 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +B.1.222 273 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A +B.1.379 274 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T +B.1.182 275 > C241T > C14408T > A23403G > C3037T > A20268G +B.1.5 341 > C241T > C14408T > A23403G > C3037T > C15324T +B.1.215 359 > C241T > C14408T > A23403G > C3037T > G3831A +B.1.177.24 360 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T +B.1.8 394 > C241T > C14408T > A23403G > C3037T > A24862G +B.1.179 395 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T +B.1.81 396 > C241T > C14408T > A23403G > C3037T > C1909T +B.1.201 397 > C241T > C14408T > A23403G > C3037T > C2940T +B.1.395 398 > C241T > C14408T > A23403G > C3037T > C6990T +B.1.384 400 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T +B.1.67 401 > C241T > C14408T > A23403G > C3037T > T26512C +B.1.98 402 > C241T > C14408T > A23403G > C3037T > C25350T +B.1.76 403 > C241T > C14408T > A23403G > C3037T > T17835C +B.1.383 404 > C241T > C14408T > A23403G > C3037T > A25575C +B.1.142 405 > C241T > C14408T > A23403G > C3037T > C14741T +B.1.131 406 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T +B.1.376 407 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T +B.1.23 408 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T +B.1.153 412 > C241T > C14408T > A23403G > C3037T > G14580T +B.1.113 413 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +B.1.70 414 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C +B.1.145 415 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A +B.1.197 416 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C +B.1.143 417 > C241T > C14408T > A23403G > C3037T > C4084T +B.1.187 418 > C241T > C14408T > A23403G > C3037T > A544G,C17104T +B.1.414 419 > C241T > C14408T > A23403G > C3037T > G20275A +B.1.93 420 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T +B.1.206 421 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T +B.1.390 422 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T +B.1.69 423 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T +B.1.77 424 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A +B.1.78 425 > C241T > C14408T > A23403G > C3037T > G29422T +20B 426 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C +B.1.195 653 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 654 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.1.134 657 > C241T > C14408T > A23403G > C3037T > G20980A +A.2.4 688 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +B.1.391 32 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T +B.1.104 33 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T +B.1.88 34 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T +B.1.79 38 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 39 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G +B.1.251 40 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T +B.1.250 41 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T +B.1.392 42 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G +B.1.252 43 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T +B.1.249 44 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T +B.1.110 54 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T +20C 61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.371 61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.440 211 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T +B.1.221.1 England/MILK-9C3D45/2020|20-09-09 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G2407T,G4442T,C6525T,C11494T,G11761T,A16044T,C20468T +B.1.415 276 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C +B.1.223 304 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T +B.1.404 305 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T +B.1.181 307 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G +B.1.416 308 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T +B.1.225 311 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T +B.1.180 312 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C +B.1.189 313 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T +B.1.157 314 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C +B.1.418 315 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T +B.1.151 342 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T +B.1.220 343 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C +B.1.210 344 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T +B.1.178 345 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A +B.1.147 346 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T +B.1.213 347 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T +B.1.209 348 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G +B.1.149 349 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 350 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T +B.1.214 351 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +B.1.208 352 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +B.1.218 353 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 355 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T +B.1.128 356 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C +B.1.205 357 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G +B.1.97 358 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G +20E.EU1 361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.177.14 361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.35 399 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T +B.1.207 410 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T +B.1.198 411 > C241T > C14408T > A23403G > C3037T > A187G > C19066A +B.1.1.119 427 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A +A.2.3 686 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A +A.2.2 687 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T +B.1.254 35 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C +B.1.88.1 37 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +B.1.110.2 60 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T +B.1.446 64 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A +B.1.437 65 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A +B.1.485 66 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C +B.1.22 67 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 68 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T +B.1.453 69 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T +B.1.362 78 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +B.1.489 79 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T +B.1.302 80 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G +B.1.431 81 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T +B.1.314 82 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T +B.1.333 83 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 84 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A +B.1.310 85 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T +B.1.509 105 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T +B.1.346 106 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 107 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A +B.1.521 108 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T +B.1.294 121 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A19899T,A21464G +B.1.306 122 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25777T,C29614T +B.1.39 123 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8788C,G26951A +B.1.324 124 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7528T +B.1.328 125 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C775T,C27923T,G28975T +B.1.341 126 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12557C +B.1.332 127 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1917T +B.1.325 128 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C23191T +B.1.293 129 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G15906T +B.1.311 141 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28893T +B.1.323 142 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T9070C +B.1.268 146 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3892T +B.1.318 147 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +B.1.369 148 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16260T,C28821A +B.1.287 149 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C20555T,C21772T +B.1.38 150 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G25523T,T27869C +B.1.515 151 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20049C,C21627A,C23655T +B.1.348 152 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 153 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C26625T +B.1.360 154 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27847T +B.1.366 155 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8041C,G22225T +B.1.363 156 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C335T,T16425G +B.1.305 157 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.117 158 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T +B.1.304 160 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 161 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11919T +B.1.330 162 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1463A,G7557A,C8818T +B.1.313 163 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5183T +B.1.331 164 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25976A +B.1.165 165 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7851T,C20233T +B.1.338 166 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25572T +B.1.452 167 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16762T +B.1.321 168 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G29291A +B.1.283 169 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A27821G +B.1.340 170 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,A28715T +B.1.444 171 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +B.1.166 172 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1887T +B.1.120 173 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C829T,G28371T +B.1.319 174 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10851T +B.1.167 175 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5312T,G27852T +B.1.267 176 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A8252G +B.1.487 177 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1734T,C23664T +B.1.355 178 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.516 179 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +B.1.337 180 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C475T,C5986T,A28389T +B.1.513 181 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G20709T +B.1.517 182 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3231T,A12850G,C21364T,A23064C,C28890T +B.1.168 183 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18213T,A18818G +B.1.312 184 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C9286T,G28899C +B.1.512 185 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25731T,C29625T +B.1.329 186 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C6406T,G18972A +B.1.315 187 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A24129G +B.1.335 188 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,A538G,T9107C +B.1.492 189 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T4888A,G28727T +B.1.115 190 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G7295T +B.1.276 192 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G26233T,C27881T +B.1.483 199 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T15366C +B.1.37 200 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C10712T +B.1.280 201 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C16616T,C26885T,C27603T,C28887T +B.1.13 202 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C14786T,G20578T +B.1.274 203 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > A716G +B.1.479 204 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G10631T +B.1.277 205 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C19884T +B.1.480 206 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C875T,A10904G,G25249T,C28854T +B.1.474 207 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 208 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C6401T,C13458T,C20946T +B.1.158 209 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 210 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T17838C,G26450T +B.1.442 249 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G28086T +B.1.441 250 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T8296C,C12076T,G28690T,C28854T +B.1.112 251 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A6512C +B.1.163 252 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G10793T +B.1.124 253 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A2161G,C16376T +B.1.439 254 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T1918C,C6402T,C8320T,C12171T +B.1.111 255 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C10507T +B.1.162 256 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C9195T,T15354C +B.1.385 257 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 258 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1154G,G29474T +B.1.245 259 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1096G,G14874T +B.1.436 265 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 266 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A11246T,A23949G,C29013T +B.1.232 278 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G27987T +B.1.243 279 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T24076C +B.1.240 280 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C18486T,T22162C +B.1.239 281 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G16741A +B.1.402 282 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4633T,T14643C,C22482T +B.1.397 283 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G1135T +B.1.229 284 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G7798T +B.1.400 285 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A +B.1.235 287 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T5507A +B.1.403 288 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4596A,G19086T +B.1.238 289 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C8683T +B.1.241 290 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C11575T +B.1.231 291 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1714T +B.1.399 292 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C28887T +B.1.236 296 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G11842A,A12759G,G18292T +B.1.447 297 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.406 298 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G25049T +B.1.408 299 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C29200T,C29451T +B.1.409 300 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +B.1.396 301 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1191T,C9521A,G29422T,A29567G +B.1.234 302 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 303 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.419 306 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T > G21778A,T28854C +B.1.190 340 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > G12550A,C20740A +B.1.1.4 429 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C +B.1.1.131 447 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18115T +B.1.1.257 448 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C27046T +B.1.1.125 449 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T27264G +B.1.1.203 450 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1800A,C23854T,G25972A,G27842T +B.1.1.71 451 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T11638C +B.1.1.157 452 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17678T +B.1.1.63 453 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21597T,C29144T +B.1.1.250 454 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T +B.1.1.189 455 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9430T +B.1.1.201 456 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 457 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.196 458 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +B.1.1.172 459 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.205 460 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5539A,G21468A +B.1.1.304 461 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C936T,G3259T +B.1.1.192 462 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C673T +B.1.1.39 463 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G9130T,T27319C,G28487A,C28868T +B.1.1.174 464 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G443A,G28378T +B.1.1.194 465 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T +B.1.1.138 467 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +B.1.1.38 468 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.155 469 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 470 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3170T,C6336T,C27673T +B.1.1.128 471 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6781T,C11916T,C19185T +B.1.1.153 472 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +B.1.1.160 473 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.261 474 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C26447T +B.1.1.165 475 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 476 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T +B.1.1.277 483 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T +B.1.1.241 484 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C +B.1.1.255 485 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T +B.1.1.254 486 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T +B.1.1.105 487 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T +B.1.1.274 489 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T +B.1.1.180 490 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C +B.1.1.286 491 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A +B.1.1.55 492 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 493 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T +B.1.1.186 494 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T +B.1.1.275 495 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.253 496 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C +B.1.1.83 497 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T +B.1.1.1 499 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 510 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 511 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.247 512 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T +B.1.1.171 519 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1437T,G29745T +B.1.1.170 520 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2062T,C5184A,C13887T,C18687T,C23248T +B.1.1.114 521 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T +B.1.1.314 542 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C +B.1.1.98 551 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 552 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T +B.1.150 553 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17249T,G17722T +B.1.1.187 554 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G +B.1.1.164 555 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A +B.1.1.200 556 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T +B.1.1.137 557 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T +B.1.1.133 559 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G +B.1.1.302 561 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +B.1.1.297 562 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C +B.1.1.97 564 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 565 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T +B.1.1.237 566 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T +B.1.1.86 570 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.115 571 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C +B.1.1.234 574 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +B.1.173 578 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A +B.1.1.134 579 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T +B.1.1.287 580 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A +B.1.1.231 581 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C +B.1.1.37 582 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 583 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T +B.1.1.59 588 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T +B.1.1.16 593 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T +B.1.1.148 594 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T +B.1.1.12 595 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C +B.1.1.229 596 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 597 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T +B.1.1.168 598 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.147 604 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +B.1.1.225 605 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T +B.1.1.239 606 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T +B.1.1.313 607 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T +B.1.1.92 608 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C +B.1.1.26 609 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A +B.1.1.89 612 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T +B.1.1.116 613 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 614 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.67 615 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T +B.1.1.10 616 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A +B.1.1.25 621 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T +B.1.1.217 625 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T +B.1.1.96 628 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 629 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T +B.1.1.178 630 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.280 632 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1543A,T4369C,T22020C,C27911T +B.1.1.56 633 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.182 634 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C8917T +B.1.1.193 635 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27996T +B.1.1.120 636 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C527T,C1962T,C7735T,T23255C,A28065C +B.1.1.132 637 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21255C,G28960T +B.1.1.32 638 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A +B.1.1.266 639 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +B.1.1.228 640 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20288G,C21721T,C26894T,C28638A +B.1.1.72 641 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.58 642 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20233T,C22210T +B.1.1.136 643 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A23063T +B.1.1.169 644 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.109 645 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T10513C,T27851C,C29541T,C29739T +B.1.1.154 646 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C16101T +B.1.1.44 647 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21302T,C21304A,G21305A,G28884T +B.1.1.111 648 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 649 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +B.1.1.263 650 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G +B.1.1.185 651 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.1.13 652 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4207T,A4208C,G11842T +B.1.110.1 59 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.44 71 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > C10376T,G18583T,G29773T +B.1.491 72 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > A3103C,C5893T,A28117T +B.1.361 74 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > T15276A,G28842T +20H/501Y.V2 75 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +B.1.309 87 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1990T,C2939T,A5264G,C16457T +B.1.359 88 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28376T +B.1.493 89 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G26020T +B.1.496 90 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.3 101 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C715T,A23586G +B.1.494 102 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C13252T +B.1.497 103 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +B.1.495 104 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28027T,G29742T +B.1.265 114 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T +B.1.336 115 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T +B.1.450 117 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G17808T +B.1.370 118 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C24378T +B.1.435 119 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C4878T,A22525G,C29272T,G29449T +B.1.423 120 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 131 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T +B.1.367 132 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.411 134 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +B.1.94 137 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C2395T,T2597C,A12878G,G17014T,G21600T,G22018T,T22917G,T24349C,C26681T,G27890T,A28272T,C29362T +B.1.375 139 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > T1171C,A5747G,C10789T,G17259T,G24007A +B.1.433 140 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C6843T,T11764C,G29402T +B.1.12 144 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > C4320T +B.1.356 145 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > T13006C +B.1.519 159 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T > G28808T,G29434C +B.1.281 194 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C2937T +B.1.389 198 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +B.1.457 213 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C882T,C6990T +B.1.466 215 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C21614T,G24197T +B.1.454 218 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G28851T +B.1.467 219 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G5206T,C26885T,G28875T +B.1.468 220 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T +B.1.460 222 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T181C,C8664T,C12525T,C15120T,G28975T +B.1.36 223 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.470 243 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.469 244 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +B.1.462 248 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C3811T,A6608G,A28911T +B.1.9.5 261 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T2113C,G9190T,G28851C +B.1.9.1 262 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T24923C +B.1.9.2 263 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T5941C,A22438T +B.1.9.4 264 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > C346T,A28959G +B.1.421 286 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +B.1.401 294 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C +B.1.405 295 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > G23522A +B.1.416.1 310 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T > C25731T,G28703C > C2706T,C28703G +B.1.258 319 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A,C27800A +B.1.256 339 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > C3411T,C3885T +B.1.1.74 430 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 431 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.3 435 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G10262A,C22995T,A27669G +B.1.1.290 436 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28256T,C29784T +R.1 437 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +B.1.1.5 439 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A11839G +B.1.1.222 440 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A23756G +B.1.1.184 441 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28905T +B.1.1.85 442 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +B.1.1.232 445 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > T2537G,G12191T,T16479C +B.1.1.8 446 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > C25528T +B.1.1.240 466 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +B.1.1.251 482 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.54 488 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T > C1471T +B.1.1.81 498 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T > C19366T +20D 500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.292 513 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C +B.1.1.305 529 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G28396A +B.1.1.215 530 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G1820A,C6541T +B.1.1.113 531 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > A11348G +B.1.1.281 532 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A +B.1.1.285 534 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 535 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C27128T +B.1.1.214 Japan/TKYE630414_2020/2020|LC593818.1|20-08 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G27604A,G28975T,C29679T +B.1.1.272 537 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 538 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G22627A,G28628T +B.1.1.283 539 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G25563C,G28178T +B.1.1.181 540 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C2509T,C14724T,G24262T,G27703T +B.1.1.139 541 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > T27645A,G27666A +B.1.1.33 543 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.61 549 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > G18898T +B.1.1.249 550 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > C22314T,T24796C +B.1.1.204 560 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A +B.1.1.264 567 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > T5465C,G24102A +B.1.1.279 568 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G18859T +B.1.1.149 569 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.1.235 572 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T +B.1.1.207 576 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 577 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > C6312A +B.1.1.308 584 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G +B.1.1.311 585 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G11230T,G11401T,T24088C +B.1.1.309 586 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 587 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 590 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 591 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 592 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 600 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.70 601 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A15972G,C19718T,T28759C +B.1.1.299 602 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A23207G +B.1.1.301 603 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A19650G +B.1.1.233 610 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T +B.1.1.65 611 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > A5538T,T25783C +L.2 617 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +D.3 622 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > C7600T,G7798T,T23548C +20F 623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.218 627 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +B.1.110.3 57 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G27915A > C601T > G12832T +B.1.351 76 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T > A22206G +B.1.507 92 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G +B.1.503 93 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G25947C +B.1.499 94 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 95 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C19145T +B.1.502 96 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > T13914C +B.1.501 97 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,G26828T +B.1.500 98 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A9984C,G25445T +B.1.504 100 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G26217T +B.1.426 112 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > A22320G +B.1.425 113 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > G9705T +B.1.514 116 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T > G10902A +B.1.282 196 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G28907T +B.1.477 197 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.36.20 221 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.28 226 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C,T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.16 233 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T +B.1.36.9 234 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +B.1.36.12 236 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 237 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.471 246 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T +B.1.472 247 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T +B.1.258.14 334 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A,C27800A > G18186T,C28854T +B.1.1.289 433 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A +B.1.1.2 434 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +20J/501Y.V3 478 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +P.2 480 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +B.1.1.143 481 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T +C.3 502 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T +C.14 503 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 504 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G +C.1 505 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T +C.2 508 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +C.4 509 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.1.293 518 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +B.1.1.50 523 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T +B.1.1.209 524 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A +B.1.1.47 526 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T +B.1.1.284 527 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T +B.1.1.179 533 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +N.1 545 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T +N.4 546 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G +N.3 547 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_14_path_mutations.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1097 @@ +sample_id path_from_root +England/BRIS-1853249/2020|20-04-02 (1) > C24034T (2) > C29518T +Wales/PHWC-25B04/2020|20-03-24 (1) > C875T (3) > A20637G +NPL/61-TW/2020|MT072688.1|20-01-13 (1) > C24034T (2) > +Wales/LIVE-A6831/2020|20-03-16 (1) > C875T (3) > T14859C +Scotland/EDB1317/2020|20-04-09 (1) > C7423T (4) > G4207A,T7423C +Scotland/EDB354/2020|20-03-30 (1) > C7423T (4) > A29780C +England/SHEF-BFF8B/2020|20-03-25 (1) > C20270T (5) > C1473T +England/LCST-24D7202/2020|20-06-22 (1) > C20270T (5) > A29683T (6) > A18671G (7) > C4021T,A9963T,T24027C +England/SHEF-BFFC7/2020|20-03-25 (1) > T4949C (8) > G28027T +England/PHEC-1E01E/2020|20-04-03 (1) > T4949C (8) > C22445T +DP0476/2020|LC571003.1|20-02-16 (1) > C29635T (9) > C29592T +DP0191/2020|LC570980.1|20-02-15 (1) > C29635T (9) > A3854G +England/LIVE-A5D06/2020|20-03-17 (1) > A10982G (24) > C6681T,G11801A +England/LIVE-A065B/2020|20-05-27 (1) > A10982G (24) > C823T,C8752T,A9741C,C19961T,C26333T,C26408T +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 (1) > A14940G (660) > C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 (1) > A14940G (660) > A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 (1) > T514C (662) > C22033A +NED/NB02_13KS/2020|MT457397.1|20-04-29 (1) > T514C (662) > G1607A,A10829G,G12795A,C17410T,A22920T +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 (1) > A12557G,C24904T,A27359G (663) > C11050T +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 (1) > A12557G,C24904T,A27359G (663) > C25916T,G29751T +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 (1) > C25692T (664) > T15867A +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 (1) > C25692T (664) > G10617A,G22225T +England/BRIS-1258A2/2020|20-03-29 (1) > G29032A (665) > C6696T,C9096T,C29754T +England/SHEF-BFEBB/2020|20-03-24 (1) > G29032A (665) > C11747T,T24364G +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 (1) > C10277T (666) > A6313G,T7191C,A7193G +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 (1) > C10277T (666) > G7273A +England/LIVE-9E66F/2020|20-04-10 (1) > C6696T (698) > C7765T,G10256T +Scotland/CVR705/2020|20-03-26 (1) > C6696T (698) > C11001T,G17122T +England/SHEF-BFF21/2020|20-03-25 (1) > C20270T (5) > A29683T (6) > A18671G (7) > +England/LIVE-A4C46/2020|20-03-12 (1) > C20270T (5) > A29683T (6) > G431A,G26754A,C28725T +Switzerland/100159/2020|LR884273.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > C16995T +England/EXET-135818/2020|20-04-11 (1) > C14805T,G26144T (10) > C7703T,T9352C,G27201T +France/40002VJ/2020|MT470179.1|20-03 (1) > C241T (25) > C14408T (26) > C2416T,G12079C,C23220A +Wales/PHWC-310CA/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > A2480G,A12529G,T14408C,G26144T +Scotland/GCVR-171160/2020|20-03-26 (1) > A1904G,C8090T,C10789T (661) > A3958G,C5826T,C17074T +England/BRIS-130E2A/2020|20-03-24 (1) > A1904G,C8090T,C10789T (661) > C16658A,C17733T +USA/WI-UW-298/2020|MT706406.1|20-04-13 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T (669) > C7728T,C21637T +USA/WI-UW-314/2020|MT706422.1|20-04-16 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T (669) > G25907T +USA/WI-UW-325/2020|MT706432.1|20-04-24 (1) > G29711T (667) > T2116A (670) > C12880T,C28854T +USA/WI-UW-290/2020|MT706398.1|20-04-08 (1) > G29711T (667) > T2116A (670) > A10070C,G28703C,C28849T +Scotland/CVR3488/2020|20-05-12 (1) > C28854T (671) > C12710T (672) > C10335T,C16428T,G22139C,C27737T +Scotland/CVR780/2020|20-03-27 (1) > C28854T (671) > C12710T (672) > C5997T +Scotland/EDB5629/2020|20-03-24 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > G27870T +HKG/HKU-904a/2020|MT365032.1|20-01-30 (1) > C8782T,T28144C (676) > C4158T,C18828T +Scotland/EDB5040/2020|20-04-02 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > C593T +England/LOND-126031F/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > A20511G +Scotland/EDB046/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C9996T,T26144G +England/BRIS-12EEB6/2020|20-04-22 (1) > C14805T,G26144T (10) > G28842T (18) > C15240T,C18086T,T23031C +Scotland/EDB199/2020|20-03-26 (1) > C14805T,G26144T (10) > G28842T (18) > C22713T,G26031T +England/CAMB-74A09/2020|20-03-18 (1) > C14805T,G26144T (10) > C23707T (19) > G6981T,G10112T,G22785T +England/ALDP-9EE3AC/2020|20-05-06 (1) > C14805T,G26144T (10) > C23707T (19) > G20991T +USA/WA3-UW1/2020|MT163716.1|20-02-27 (1) > C14805T,G26144T (10) > G5572T (22) > T2446C,C3411T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 (1) > C14805T,G26144T (10) > G5572T (22) > C28311T +England/ALDP-52C0FA/2020|20-06-01 (1) > G29711T (667) > C1218T,G27806T (668) > C9870T,C10702T,T23047C +England/LIVE-9D7D6/2020|20-04-15 (1) > G29711T (667) > C1218T,G27806T (668) > C27493T +Japan/TKYE63557_2020/2020|LC581365.1|20-03 (1) > C28854T (671) > C11752T,C25665T,A27700G,T28854C,T28912C (673) > C26447T +Japan/TKYE64688_2020/2020|LC581375.1|20-03 (1) > C28854T (671) > C11752T,C25665T,A27700G,T28854C,T28912C (673) > T1907G,C4456T,A10471G +USA/CA-QDX-33/2020|MT614459.1|20-03-15 (1) > C6312A,C13730T,C23929T,C28311T (674) > C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 (1) > C6312A,C13730T,C23929T,C28311T (674) > C11455T +England/PHEC-1A601/2020|20-03-04 (1) > G1397A,T28688C,G29742T (699) > A19526G +England/PHEC-2275E/2020|20-06-22 (1) > G1397A,T28688C,G29742T (699) > G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > +Wales/PHWC-285F4/2020|20-04-01 (1) > C14805T,G26144T (10) > T17247C (11) > A7479G,C25572T (14) > G12191T,G16188T,C19524T,C28887T +England/BRIS-130965/2020|20-04-13 (1) > C14805T,G26144T (10) > T17247C (11) > A7479G,C25572T (14) > C10741T,C27498T +Scotland/CVR44/2020|20-03-13 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > G443A +Scotland/CVR839/2020|20-03-27 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > T7816A,C24023T +Scotland/GCVR-170107/2020|20-03-23 (1) > C14805T,G26144T (10) > T17247C (11) > C988T (16) > G1857T,A5570G,A9483G +Scotland/CVR207/2020|20-03-18 (1) > C14805T,G26144T (10) > T17247C (11) > C988T (16) > G12832A +England/CAMB-8042A/2020|20-04-10 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > A4015T +England/CAMB-737B8/2020|20-03-30 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > G3971T,G28380T +USA/WA-S885/2020|MT642386.1|20-04-22 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > G7739T,C25904T +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > A5269G,C9943T +England/BRIS-1265AA/2020|20-04-10 (1) > C14805T,G26144T (10) > G13627T,C15540T,A28338G (23) > T9046C,C11779A,C27688T +AUS/NT38/2020|MT641726.1|20 (1) > C14805T,G26144T (10) > G13627T,C15540T,A28338G (23) > G1599T,C3096T,C12781T,G17944T +England/BRIS-123965/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G7042T,G8861T (29) > C5806T,C10450T +IND/Isolate_9088/2020|MW555597.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4809T (30) > G14245A,G28325A +England/BRIS-125347/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G7042T,G8861T (29) > +IND/763/2020|MT577009.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4809T (30) > +England/CAMB-7772D/2020|20-03-31 (1) > C241T (25) > T241C,G1440A,G2891A (658) > C4668T,C21742T,C25931A +England/BRIS-12208F/2020|20-03-21 (1) > C241T (25) > T241C,G1440A,G2891A (658) > C14585T,C27603T +Scotland/EDB1824/2020|20-04-16 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > C8240T,T8941C,C9438T,C19185T,G27358T +Spain/H12_46/2020|LR884009.1|20-04-08 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > C7967T,C16694T +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 (1) > C8782T,T28144C (676) > A17858G,C18060T (681) > A7966G,A22422G +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 (1) > C8782T,T28144C (676) > A17858G,C18060T (681) > C4776T,C9491T,C17747T,G28086T +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > +Spain/R10_33/2020|LR884127.1|20-03-02 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > T25979G +AUS/VIC1255/2020|MT451830.1|20-04-11 (1) > G1397A,T28688C,G29742T (699) > C1076T (701) > T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29 (1) > G1397A,T28688C,G29742T (699) > C1076T (701) > A28955T +England/NORT-284A9B/2020|20-03-25 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > G28655A,C28657T +Scotland/CVR10/2020|20-03-10 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > T9223C,A21625G +England/CAMB-75BD8/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28514T (45) > C18060T +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28514T (45) > T4579A,C5175T,T18552C,C25521T,G27877T +USA/WI-UW-26/2020|MT706147.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3871T (49) > A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3871T (49) > C19862T +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2939T (50) > C6401T,C18877T,G28882T +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2939T (50) > T11698C,C18322T +USA/IN-QDX-184/2020|MT786818.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A696C (51) > G3871T,T27299C +USA/WI-UW-558/2020|MT750137.1|20-06-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A696C (51) > +AUS/VIC2260/2020|MT972173.1|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G24077T (52) > G14294A,A23746G,T24077A,A29622C +England/EXET-1358BE/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G24077T (52) > A20092G,T28630G +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C815T,C3411T,T10795C,A17521G,C18452T +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1997T +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G28881A +England/NOTT-10E1B3/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T3952C,C6268T,T15324C +USA/WI-UW-37/2020|MT706158.1|20-03-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G11417T +Scotland/CVR2927/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3831A (359) > A1801G,C9857T,C18568T +Scotland/GCVR-173C30/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3831A (359) > T7441C +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A24862G (394) > T7132C,C8327T,C9112T,C24442T,G25429T +Switzerland/140091/2020|LR824563.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A24862G (394) > T658C,A2655C,C28629T +England/BRIS-12755E/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1909T (396) > C9438T,G16647T,C22264T +England/BRIS-12468B/2020|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1909T (396) > T27576C +England/NORW-E9DF7/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2940T (397) > C7765T +Scotland/EDB156/2020|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2940T (397) > C4276T,C26822T,G29227A +Wales/PHWC-27B20/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > T22435C +Wales/PHWC-2624A/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C27476T +Wales/PHWC-2BF8A/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T26512C (401) > C19011T,C22323T,C26415T +Wales/PHWC-29E43/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T26512C (401) > G9220A +England/LOND-D3534/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25350T (402) > T27280C +England/PHEC-20C24/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25350T (402) > C3096T,G3939A,G8179T +England/CAMB-7D2EA/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T17835C (403) > G26273T,C26408T,C29370T +England/LIVE-A63E5/2020|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T17835C (403) > G680T +Wales/PHWC-260C8/2020|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A25575C (404) > C12242T,C22264T +England/BRIS-12F969/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A25575C (404) > C96T,C4113T,G14857T +England/PHEC-2083F/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C14741T (405) > A187G,A5650G,C25350T +Wales/PHWC-16C6F0/2020|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C14741T (405) > T8944C,G25552T +Wales/PHWC-27461/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C5506T,G14241T (407) > C19374T +Wales/PHWC-29F13/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C5506T,G14241T (407) > C19151T,G23612A +IND/GBRC99/2020|MT509504.1|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G4866T,C14425A (415) > A21511G +IND/GBRC31/2020|MT467247.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G4866T,C14425A (415) > C3737T,C12710T,T21890C +AUS/VIC1239/2020|MT451821.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6723T,T26094C (416) > G28476T +AUS/VIC1282/2020|MW153048.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6723T,T26094C (416) > G6650T,T7034C,T18974G +IND/GBRC128/2020|MT539172.1|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4084T (417) > G5572T +IND/GBRC123/2020|MT539176.1|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4084T (417) > G5194T,C22326T +POL/PL_MCB_32/2020|MW273814.1|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A544G,C17104T (418) > C1594T,A3090T,C23635T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A544G,C17104T (418) > +England/CAMB-7BED9/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20275A (419) > A6672G,C10641T +Netherlands/NA_302/2020|LR878041.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20275A (419) > A3058G +USA/WI-UW-1385/2020|MW035549.1|20-09-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G2282A,T9742C,C17639T (421) > C18508T,G19174T,G24883T,C26370T,C28868T +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G2282A,T9742C,C17639T (421) > G20160T +Northern_Ireland/NIRE-1022CB/2020|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G29422T (425) > C1997T,C28708T +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G29422T (425) > C2509T,G12311T,C12357T,C20148T,C27925A +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > T241C +GRC/202_32984/2020|MT459870.1|20-03-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +USA/FHCRC-19442/2020|MW593677.1|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20980A (657) > T5028C,C8818T,G9398T,C15952T +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20980A (657) > A1005G,T6407A,G20476T +Wales/PHWC-31CB7/2020|20-04-14 (1) > C241T (25) > T241C,G1440A,G2891A (658) > G28851T (659) > C9180T,C16466T,G19670A +Wales/PHWC-26D2B/2020|20-03-30 (1) > C241T (25) > T241C,G1440A,G2891A (658) > G28851T (659) > C5183T,G18651T +MYS/188407/2020|MT372480.1|20-03-18 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T (675) > T25473C +AUS/VIC961/2020|MT451653.1|20-03-27 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T (675) > A9433G,T19035A,T29793C +Spain/R11/2020|LR884126.1|20-03-06 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > +USA/COVID20-0008/2020|MT764174.1|20-03-10 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 (1) > G1397A,T28688C,G29742T (699) > A1079C,C9319T,C19862T,T27384C (700) > C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 (1) > G1397A,T28688C,G29742T (699) > A1079C,C9319T,C19862T,T27384C (700) > C6701T,T7225C +England/CAMB-76515/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C16289T (32) > T25429G +England/CAMB-1AE294/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C16289T (32) > T4587A,G12833A,C15824T +England/LEED-2A8D10/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C13730T (33) > C25916T +England/CAMB-1AC6F4/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C13730T (33) > C6558T,G9130T,G26529T +Scotland/EDB2049/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > T25916C +England/CAMB-7EBDF/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A13433G,C18377T +Scotland/CVR3417/2020|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > A28841G (39) > G3689A,T11660A,C29743T +Scotland/CVR1519/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > A28841G (39) > A6441G +England/MILK-93B73B/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1141T (40) > C3817T,C25160T,C28099T +England/MILK-9589F6/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1141T (40) > C7488T,C14396T +England/BRIS-128441/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C28045T (41) > G10324T,C22713T +England/CAMB-7C39D/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C28045T (41) > G2885T,G26458C,C29253T +England/ALDP-50085E/2020|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G21538T (44) > T11164G,G15406T,G22332A,G27583T,G29427T +England/PHEC-127E8/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G21538T (44) > +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25665T,G28325T (47) > C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25665T,G28325T (47) > G16075T +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > A17521G,A22206G +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > C23551T,G27084T +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24381T (62) > +USA/VA-DCLS-0676/2020|MT911804.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24381T (62) > C23718T +USA/MI-QDX-476/2020|MW064508.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T18877C,C25904T +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1683C,C22224T,C28367T +USA/WI-UW-1105/2020|MT929055.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T3011C,G22205T,T27869C,T28853G (267) > C1824T,C19718T,C25919T,C29149T +USA/RML-22/2020|MW221270.1|20-08-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T3011C,G22205T,T27869C,T28853G (267) > T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T +Scotland/CVR2931/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1545T,C22879A (273) > T1545C,C8334T,C19089T +Scotland/GCVR-172150/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1545T,C22879A (273) > +England/BRIS-124885/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A11782G,G22203T (274) > T2815C,T6892C +England/BRIS-122C4F/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A11782G,G22203T (274) > G27754T +USA/WI-UW-1046/2020|MT928999.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15732T,T19143C (276) > G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15732T,T19143C (276) > G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T +Scotland/CVR3054/2020|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15438T (304) > T6673C,C28887T +England/MILK-95698F/2020|20-06-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15438T (304) > G3340T,T7258C,T8941C,G12911A +England/CAMB-79ECC/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > G21778A,T28854C (306) > +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A +USA/AK-PHL414/2020|MT946886.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C2143T,C29370G (307) > G26062T,C29119T +USA/AK-PHL689/2020|MW173160.1|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C2143T,C29370G (307) > C6336T,G16853T,A21794G,G21800T,G25244T +England/MILK-974596/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C1625T,C19170T,A20829G,A25255G,C26469T,G27666T +Switzerland/310363/2020|LR898676.1|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > G542A,A4372C,C10277T,G14268A,G29747T +England/MILK-978626/2020|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T9697C (312) > C147T,C12473T,C19602T,C23266T,A29517G +England/MILK-9A565D/2020|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T9697C (312) > A2140G,C3015T,C9165T,C10448T,C11866T,T28813G +USA/NM-QDX-264/2020|MT806796.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C4582T (313) > G6404T,C17999T,T25123C,G28378T +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C4582T (313) > C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A +Scotland/EDB1198/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T17126C (314) > T5161A,C25046T,G29742T +England/PHEC-20A84/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T17126C (314) > C28201T,C28546A +Scotland/EDB6324/2020|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C6472T,C7815T (315) > G22363T,T23406C,T26972C +Scotland/EDB4579/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C6472T,C7815T (315) > G13397A,C21682T +Wales/PHWC-360E3/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C18904T,G25606T (342) > A3260G,T7185C,G21867T,G25266T,A26513G,G29462C +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C18904T,G25606T (342) > C21646T,C22208T +Netherlands/NA_289/2020|LR878031.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T10561C (343) > C12085T,A23173G,C28844T +France/10065EE/2020|MT470176.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T10561C (343) > C26895T,C29013T +France/10036BG/2020|MT470106.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G28202A (345) > +IHUCOVID-0033|LR794417.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G28202A (345) > G16089A,G24794T +England/PORT-2D0D4C/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C25433T (346) > A10781G,A16169G,G21600T,C29546T +Switzerland/100210/2020|LR884314.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C25433T (346) > C1191A,G15260A +POL/PL_MCB_72/2020|MW273854.1|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A7031G,G13617T (347) > A2848G,C9286T,C23202T +POL/PL_MCB_97/2020|MW273879.1|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A7031G,G13617T (347) > C2570T +England/QEUH-9CE80D/2020|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T (349) > A21018G,C21302T,C21304A,G21305A,C27167T,C28708T +England/QEUH-990752/2020|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T (349) > +AUS/VIC38/2020|MT450953.1|20-03-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C15277T (350) > C10350T +IHUCOVID-0133|LR794459.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C15277T (350) > C8394T +USA/MN67-MDH67/2020|MT911566.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > G11596T (355) > +Netherlands/NA_292/2020|LR878032.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > G11596T (355) > G20568A +Switzerland/101166/2020|LR824397.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C17118T +PER/covper020/2020|MW030251.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C15277T,A21917G (357) > T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T +PER/covper091/2020|MW030227.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C15277T,A21917G (357) > +England/ALDP-49A5AE/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C7834T,C16997T,G25429T (395) > C2983T,G10565A,C17336T +England/ALDP-4A2A77/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C7834T,C16997T,G25429T (395) > +Wales/PHWC-16930B/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C29200T (399) > C3264T +Wales/PHWC-34285/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C29200T (399) > A6616G,C12915T +USA/UT-08320/2020|MW206019.1|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C26256T,C29668T (400) > A11782G,G27987T,C28292A,G29755T +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C26256T,C29668T (400) > C5184T,C5416T,G8017T +England/QEUH-B2DD0B/2020|20-11-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A1610G,C9344T,C13335T,C28887T (406) > G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G +England/MILK-A7B0BB/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A1610G,C9344T,C13335T,C28887T (406) > C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T +AUS/VIC989/2020|MT451674.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T7438C,C29353T (408) > A26864G,C27630T +AUS/VIC1056/2020|MT451723.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T7438C,C29353T (408) > A21944T +England/BRIS-12B2BD/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C19066A (411) > A1699G,C6361T,C25797T,C27577T,C27641T +England/BRIS-128DCE/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C19066A (411) > C12213T +Scotland/GCVR-1725BE/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1884T,T26497C (414) > C6730T,G28001T +Scotland/CVR30/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1884T,T26497C (414) > +England/NORT-289814/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C13862T,C28836T (420) > C9165T,T21033C +England/ALDP-9ED57A/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C13862T,C28836T (420) > A23796G,G23824T,C29095T +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C28603T,G28899T (422) > C10279T,C12132T,T16077C,T20401C +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C28603T,G28899T (422) > A2104G,T21656C,G25244C +Scotland/CVR129/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C23422T,T23849C,C29686T (423) > G29227A +Scotland/CVR52/2020|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C23422T,T23849C,C29686T (423) > C25667T +GRC/208_33922/2020|MT459876.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +England/CAMC-947875/2020|20-07-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25699T,G28884T,C28896T,C29738T +GHA/34927_S20/2020|MT890226.1|20-05-23 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C24370T (693) > C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C24370T (693) > C2306T,C5672T,C5986T,C13515T,G24926T +England/CAMC-C91F38/2020|20-12-11 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > G9802A,G11230T,A16512G,C19951T,G26428T (696) > C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > G9802A,G11230T,A16512G,C19951T,G26428T (696) > C10818T,T11230G,C25702T +Scotland/EDB2100/2020|20-04-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > +England/CAMB-1AC7D3/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > A13863G +Scotland/CVR2381/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > C1848T +Scotland/CVR2197/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > G21776T +England/NORW-E8C37/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C3602T,A24232G (42) > C11460T +England/NORW-E75A6/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C3602T,A24232G (42) > T3602C,C6538T,T21206G +Wales/PHWC-3122E/2020|20-04-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1589A,G29474T (43) > A22457G +Wales/PHWC-1645EC/2020|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1589A,G29474T (43) > A11438G +England/ALDP-9ED9F6/2020|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1914A,T16456C (46) > C10681T,G16855T,C26060T,C29614T +England/ALDP-944BD9/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1914A,T16456C (46) > G4399T,G27746T +England/LEED-2A91D7/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > C23453T (60) > T1778C,C6762T,C28849T +England/LEED-2A87C7/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > C23453T (60) > G3230A +USA/WA-UW-4105/2020|MT358746.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A13512T,G13513T,G13514A (64) > T1333A,T1334A +USA/WA-UW-2220/2020|MT345839.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A13512T,G13513T,G13514A (64) > T1059C,C15763T,T25563G +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1298A (65) > G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1298A (65) > C344T,C5090T,C10228T,A22001G +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20037C (66) > G2900T,C23179T +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20037C (66) > G28073T +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2668T (69) > C1912T,G2867T,C12651T +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2668T (69) > T18240C,T28009C +Wales/PHWC-1658A6/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T,C24621T (79) > G2830A,A2903G,C7869T +Wales/PHWC-2E0A2/2020|20-04-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T,C24621T (79) > C18568T +Scotland/EDB3137/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > G25494T,C29719T +Scotland/EDB2810/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > C19113T,T21752C +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1738T,C11916T,C28087T (105) > G3242A,T11449C,T14508C,A26126T,T28087C +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1738T,C11916T,C28087T (105) > G9928T,A20716G,A24383G,G25538T,G28123T +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C379A (107) > C10369T,C12115T,G12202T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C379A (107) > A20503G +USA/WA-UW-2108/2020|MT345811.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G3259T,T27964C +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G14580A,T19527C,A19821G,G22346T,C28099T,C29722T +USA/WI-UW-1119/2020|MT929068.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A19899T,A21464G (121) > +USA/WI-UW-1005/2020|MT846691.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A19899T,A21464G (121) > G4232T,C9120T,A18500G,G22093A,T23296C,G25444A +USA/WI-UW-1092/2020|MT929042.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7528T (124) > G271T,T13270C,C28093T,C28890T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7528T (124) > G8213A +USA/WA-QDX-235/2020|MT806806.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12557C (126) > A23534T +USA/WA-S1266/2020|MT821676.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12557C (126) > T4441C,G6125A,C17639T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C23191T (128) > A25910C +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C23191T (128) > C9907T,C17125T,T18144C +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G15906T (129) > C5548T,C28153T +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G15906T (129) > T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28893T (141) > G22021A,C22998T,G23501T +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28893T (141) > T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T9070C (142) > C20325T +USA/CA-CZB0731/2020|MT385450.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T9070C (142) > G9049T,T10960C +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3892T (146) > G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3892T (146) > G20062T +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > C3044T +USA/WA-UW-2008/2020|MT326031.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > G4975T,T29194C +USA/WA-UW-6327/2020|MT412324.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C26625T (153) > C5240G +USA/WA-UW-3832/2020|MT358685.1|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C26625T (153) > C3141A,C17766T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27847T (154) > A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27847T (154) > C6628T +USA/DC-HP00089/2020|MT509482.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11919T (161) > C9510T +USA/UT-03817/2020|MT873871.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11919T (161) > A13440G,C21998T +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1463A,G7557A,C8818T (162) > C3264T,G21204T +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1463A,G7557A,C8818T (162) > A20284G,C22477T,C23604T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5183T (163) > G28878T +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5183T (163) > A361G,C27596T +USA/MI-QDX-620/2020|MW064645.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25976A (164) > G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25976A (164) > C18981T +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16762T (167) > G4105A,C4878T,G10759T,G18803T,A24478T,C29296T +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16762T (167) > A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T +England/OXON-B15A5/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G29291A (168) > C6627T,A11740T,G18984T,C24023T +England/BRIS-129D72/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G29291A (168) > C1593T,C10440T +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A27821G (169) > C2878T,G3146A +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A27821G (169) > G7405T,G11113A,C12225T,G25437T,C25516T +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1887T (172) > G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1887T (172) > A27979T +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10851T (174) > T3037C +USA/CT-UW-4372/2020|MT345874.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10851T (174) > C3768T,C25584T +England/BRIS-12BF3E/2020|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5312T,G27852T (175) > G4960T,C6633T,T10732C,T20285G,C28005T +England/BRIS-12DF1E/2020|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5312T,G27852T (175) > A5452G,C21846T,G28337A,G28378T +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A8252G (176) > C8637T,C9360T,G11540T,A23299G,G25311T,G29745T +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A8252G (176) > G15193A,C25626G +Northern_Ireland/NIRE-1021DD/2020|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G20709T (181) > A6360G +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G20709T (181) > C4002T,G17338T,A21080C,G22104T +England/PHEC-15A73/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25731T,C29625T (185) > C7735T,C11757T,C18501T +USA/CA-QDX-796/2020|MW064788.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25731T,C29625T (185) > C16329T,C23536T,G27906T +B90|LR898037.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A21360C +O9|LR963074.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A1925C,C5796T +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A24129G (187) > G1325T,A6351C,C12741T +USA/WI-UW-738/2020|MT772509.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A24129G (187) > T3049C,G4972A +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > T5674C,C8290T +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > C466T,A17691G +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G7295T (190) > C28290T +England/CAMC-946515/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G7295T (190) > C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T +USA/WI-UW-249/2020|MT706376.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T15366C (199) > C8016T,G28903T +USA/WI-UW-84/2020|MT706205.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T15366C (199) > C18481T,G25687A,C29296T +USA/VA-DCLS-0593/2020|MT951960.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C10712T (200) > T25304C,C28890T +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C10712T (200) > T9708C +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C16616T,C26885T,C27603T,C28887T (201) > C7267T,A25201G,C29719T,C29774T +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C16616T,C26885T,C27603T,C28887T (201) > A7209G,C8950T,T17262C,T22645C,T29010C +USA/UT-04888/2020|MW084559.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > A716G (203) > G4960T,G21604T +USA/UT-04282/2020|MW084509.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > A716G (203) > C10456T,G19816T,G25494T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G10631T (204) > +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G10631T (204) > G8131T +Wales/PHWC-15DFD9/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C19884T (205) > G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T +Wales/PHWC-2AF12/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C19884T (205) > C26447A +IHUCOVID-0441|LR794655.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C6401T,C13458T,C20946T (208) > T2578C,C13105T +IHUCOVID-0428|LR794641.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C6401T,C13458T,C20946T (208) > T10480C +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +Switzerland/100363/2020|LR884411.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +USA/UT-01683/2020|MT536956.1|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A6512C (251) > G370T,A3841T +USA/UT-03892/2020|MT711875.1|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A6512C (251) > C683T +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G10793T (252) > C29311T +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G10793T (252) > G21724T,G25186A +England/NORW-E7EBA/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C10507T (255) > A476G,A16638G,G17893T +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C10507T (255) > C1403T,G7798T +USA/WI-UW-413/2020|MT772562.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C5884T,T9195C +USA/WI-UW-288/2020|MT706396.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C21855T +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > C1420T +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > G15982T,G24914T +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A11246T,A23949G,C29013T (266) > C9967T +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A11246T,A23949G,C29013T (266) > C5392T,C18654T,C19983T,G25177T +BHR/740704818/2021|MW661071.1|21-01-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T (272) > C1593T,T16138C,C25667T +England/QEUH-E93C6A/2021|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T (272) > A1807G,C9565T,G18670A,C22480T,T23176C,G27916T +Scotland/EDB3341/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G27987T (278) > +Scotland/EDB6880/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G27987T (278) > G6461T,C17550T,C24865T +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T24076C (279) > G7393T,C27804T +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T24076C (279) > C390T,A9984C,A15250G,G15253A,G18412T +England/ALDP-B252AA/2020|20-11-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C18486T,T22162C (280) > C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C18486T,T22162C (280) > C4898T,A11934T,G23868T +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G16741A (281) > G3259T,C7720T,G11146T,G22992T,G24781T,C25584T +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G16741A (281) > C1060T,C8334T,T21000C +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G1135T (283) > G1148T,G28109T +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G1135T (283) > G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T +England/LOND-D5444/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G7798T (284) > C12789T +Scotland/CVR3238/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G7798T (284) > G22992T +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > A4143G,C6627T,C15960T,T19341C,A27834T,C28724T +Scotland/EDB3662/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T5507A (287) > A19855G +England/ALDP-6FB8FB/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T5507A (287) > C335T,C9024T,G15906T,C21614T +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4596A,G19086T (288) > C23114T +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4596A,G19086T (288) > G9111A,C13517T,C17639T,A20649T +England/LIVE-A00F3/2020|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C8683T (289) > C6336T,C12672T,C13335T,G26173T +England/QEUH-544733/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C8683T (289) > C7564T,C12400T +England/MILK-654007/2020|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1714T (291) > C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C +England/OXON-B1781/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1714T (291) > C27213T +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C28887T (292) > G1843A,C3828T,C12880T,C19386T,G25252T +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C28887T (292) > C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > C24258T +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > +England/MILK-977645/2020|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G25049T (298) > C3695T,C18744T +England/CAMC-B325A1/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G25049T (298) > G5504A,T25570C,C27303A,C28697T +England/PHEC-224A2/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > G21778A,T28854C (306) > C9979T,G21853T,G29195T,C29272T +England/NORW-ECD21/2020|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C12915T,G21255T (311) > C1684T,C6593T,G14829T,C23525T,G29744A +England/NORW-E755B/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C12915T,G21255T (311) > A4198C,C7011T +IND/nimh-19510/2020|MW181843.1|20-05-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C3634T,C28854T (344) > C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T +IND/GBRC174b/2020|MT607610.1|20-06-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C3634T,C28854T (344) > C22444T +Scotland/CVR3629/2020|20-05-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > G18380T +Scotland/QEUH-5456F9/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > C6606T +Switzerland/240009/2020|LR880588.1|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A (353) > +Switzerland/240084/2020|LR880634.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A (353) > C815T,C8752T,C25904T,G27147T +England/LIVE-A65EF/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G14580T (412) > G10523C +Wales/PHWC-2B7CE/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G14580T (412) > C9857T,G28903C +England/ALDP-94D8D9/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3338T,C3511T,A22301G,G29508A (424) > C19698T,C27393T +England/ALDP-9442D4/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3338T,C3511T,A22301G,G29508A (424) > T3616A,T23686C,T27634C +England/PORT-2D3B4F/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C17410T,C18788T,G21830C,C27688T,G29742T +England/EXET-136EE8/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C4784T,C15720T,C23664T +England/PHEC-215FB/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18115T (447) > A5855G,C18110T,A27277G +England/PHEC-1B7C1/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18115T (447) > +Switzerland/120182/2020|LR860799.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C27046T (448) > G13897T,C24621T,T26038C,G26550A,T27046C +England/ALDP-9545BA/2020|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C27046T (448) > T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C +England/BRIS-12F78D/2020|20-03-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C25584A +Switzerland/100802/2020|LR824314.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C8389T,C29708T +England/NORT-282972/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > +England/CAMB-80554/2020|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > T3745C +England/PHEC-20E4C/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > C7200T,C8290T +England/NORT-283B7B/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > T28118C,G29227A +England/ALDP-95665B/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9430T (455) > G571A,G9575A,C10074T +England/CAMB-7767B/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9430T (455) > C23802T,C28045T +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C2842T,C18570T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C17125T +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5539A,G21468A (460) > T1937C,A15820G,T22441G +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5539A,G21468A (460) > C6578T,C16049T,G19872C,C26768T +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C673T (462) > C379T,T4125C,C14220T,T25479A +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C673T (462) > +England/SHEF-C9FBB/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C26447T (474) > C1190T,A25410C,C25831T,T26447C +England/LOND-D6531/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C26447T (474) > C2710T,T2872C,C3041A +England/MILK-99D597/2020|20-08-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > C6629T,C15720T,G27877T,G27996T,A29424T,G29688A +Scotland/EDB6515/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > +FRA/Env-Di/2020|MT709105.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1427T (486) > G3419A,G3871T,C13517T +AUS/VIC1786/2020|MT612326.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1427T (486) > C6195T,C10969T,T17568C,G20679T,T28098C,C29722T +England/CAMB-7620F/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4876T,T12809C +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4795T,C29171T +England/PHEC-1DF03/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C18568T,G24348T +England/CAMB-1AB21F/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C6385T,C12880T +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > T28010A,T28127C +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > C18652T +England/PHEC-16F19/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > C4570A +England/GSTT-265D4DF/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > +Northern_Ireland/NIRE-1038B9/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > G25947C,C28312T +Northern_Ireland/NIRE-FCE85/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C12747T,G18028T +England/BRIS-124C89/2020|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T313C,C29119T,C29585T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C3096T +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C28969T +England/LOND-D53CF/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G621A +Scotland/EDB5196/2020|20-05-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G26615T (552) > C13384T,A18902C,C27644A,A29767C +Scotland/CVR3185/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G26615T (552) > C16946T +England/CAMB-83A9E/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > G7761A,C14931T +England/EXET-136ED9/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > C8733T +England/ALDP-955D39/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3896T (556) > G5629T,G19889T,C27673T +Switzerland/300258/2020|LR898536.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3896T (556) > C6701T,C12116T,C14352T,G17334T +England/SHEF-D1D3E/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18713T (557) > C21618T,C25047T,C29095T,G29747T +England/SHEF-CBE43/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18713T (557) > C11396T,C17676T +England/ALDP-90D6AE/2020|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > A3776G,C21855T,G25166C,C25831T,C26111T,C26195T +POL/PL_P12/2020|MT511068.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > C106T,C8025T +England/MILK-9E2BDD/2020|20-09-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20742C (562) > A9337G,A27086T +Northern_Ireland/NIRE-1088C3/2020|20-09-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20742C (562) > C16260T,G25340T,C27684T +England/PHEC-219E0/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T23227C +England/LEED-2AA59E/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C28969T +England/MILK-8664D7/2020|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C29733T +England/MILK-629D13/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G1820A,C11003T,T13417C,G22409T,C25896T,G25963A +England/SHEF-C13B7/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > G10870T,C15315T +England/SHEF-10B2E79/2020|20-05-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > A9272C,G26416T +England/OXON-AEF9E/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C140T,T6582A +Wales/PHWC-162E7A/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C5497T +England/ALDP-954C6A/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G27857T +England/ALDP-A524EB/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C3099T,C17678T,G19816A,C25728T +Wales/ALDP-6C3E72/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > C13329T,C29675T +England/ALDP-5A15D0/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > G6589A,A22528G +England/PHEC-20B81/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20474T (594) > +England/MILK-992E97/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20474T (594) > A5128G,T6376A,C16329T,G25012A,C25728T,C27509T +England/QEUH-95DD9B/2020|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C2113T,T27856G +England/MILK-9570D4/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C7768T +England/LIVE-9BC33/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > C4540T,C28006T +England/CAMB-1B087F/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1170T (607) > T8416C,C11379T,C16178T,G27651C +England/PHEC-2223F/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1170T (607) > C2488T,T7582C,C13671T +England/ALDP-5A2A49/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3154C (608) > C18981T +England/ALDP-5A2D6E/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3154C (608) > T15231C,G19670A,G25687T +USA/WA-S1407/2020|MT821568.1|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > T6023C,C19041T,A21312G,C28312T +USA/WA-S1434/2020|MT821707.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C8802T +Scotland/CVR1557/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G23401T +Wales/PHWC-34610/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G16014A +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C19273T +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > G15260T,G26268T +England/CAMB-82060/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > C5575T,A5991G,C13329T +England/CAMB-82E1B/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8374T +SAU/KFSHRC44/2020|MT820480.1|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > +SAU/KAIMRC67/2020|MT820487.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > G29422T +Scotland/EDB300/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2399T (629) > C15240T +Scotland/CVR3194/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2399T (629) > C10335T,A11430G,G19117T,G25429A,A27232G,C28940T +England/BIRM-6529A/2020|20-09-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C8917T (634) > C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T +USA/WA-S2831/2020|MW077478.1|20-09-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C8917T (634) > C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C +IND/GBRC203a/2020|MT669321.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C5700A (638) > A2292C,C2836T,G25563T,C29750T +USA/WA-S2809/2020|MW077484.1|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C5700A (638) > C313T,C1489T,G3287T,C9693T,C10815T,C15346A,C16626T,C25728T,G29474T,C29750T +England/CAMB-7C12A/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +England/CAMB-83348/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +England/CAMC-946506/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A23063T (643) > C913T,C6636T,G21800T,C27972T,G28048T +AUS/VIC2173/2020|MT972184.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A23063T (643) > G10540A,C26984T,T28196C +England/SHEF-D1CE6/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C16101T (646) > C5339T,A29571T,C29572T,G29573A +England/SHEF-C0F96/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C16101T (646) > G12514T,A18616G,C28256T,G29779C +Netherlands/NA_359/2020|LR883961.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C13502T +Netherlands/NA_589/2020|LR883868.1|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C21588T,G25012T +England/ALDP-BCA4B0/2020|20-11-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T (653) > +England/ALDP-119985B/2021|21-01-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T (653) > G7319A,G26526T,C27213T +USA/WI-UW-06/2020|MT772088.1|20-03-21 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > G16381A,T17877C,G25500T (692) > C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > G16381A,T17877C,G25500T (692) > C25854T +USA/WA-S3017/2020|MW474188.1|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T (48) > G4508A,T7884C,C21811T +USA/WA-S2852/2020|MW079820.1|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T (48) > C17795T,G26230T +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > T17208C +USA/WI-UW-269/2020|MT429191.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > A23588T,C27657T +England/CAMB-7A7DF/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > G8578A +Netherlands/NA_18/2020|LR878352.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > C23506T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > A6035G +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > T15276A,G28842T (74) > G11417T,A15276T,G20679T,T21291C +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > T15276A,G28842T (74) > G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T +USA/CA-QDX-434/2020|MW064457.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A2018G,C18029T (82) > C8697T,T18029C +USA/UT-02231/2020|MT444626.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A2018G,C18029T (82) > C2445T,G20890A,G25947T,G28373T,G28374T +USA/WA-S2850/2020|MW079819.1|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T (83) > A4935G,T26510C,G29736T,C29762G +USA/WA-S2746/2020|MT947577.1|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T (83) > +USA/WI-UW-879/2020|MT846567.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G19542T,C23551T,C28821A (84) > G3403T,G13201T,C26527T +USA/UT-05590/2020|MW084605.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G19542T,C23551T,C28821A (84) > A2151G +Netherlands/NA_588/2020|LR883860.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18281A,A20755C,G25784T (85) > A20742G +Netherlands/NA_583/2020|LR883819.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18281A,A20755C,G25784T (85) > C4113T,C6555T,C25731T +USA/WA-S2992/2020|MW474166.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1990T,C2939T,A5264G,C16457T (87) > G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1990T,C2939T,A5264G,C16457T (87) > G596A,G1820A,G9526T,C14183T,C28344T +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T (88) > T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T (88) > +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > C4012T +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > C8109T +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > T12925C +USA/WI-UW-1126/2020|MT929103.1|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C715T,A23586G (101) > G487A,C4876T,A5877G,C18555T,A27489G,C28045T +USA/WI-UW-1071/2020|MT929023.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C715T,A23586G (101) > G1957T,C2623T,C13115T,G22026T +USA/VA-DCLS-0481/2020|MT951936.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T (102) > C799T,C6701T,C23604T +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T (102) > +KOR/YS006/2020|MW345824.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > C26261T +KOR/YS008/2020|MW345825.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28027T,G29742T (104) > C12754T,A14012T,G14250T,C22687T +USA/WA-S1037/2020|MT642186.1|20-05-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28027T,G29742T (104) > A18671C,C25466T +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T (106) > C676T,A3536G,C29370G +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T (106) > +USA/MN-QDX-981/2020|MW065078.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > C3817T,A23813G +USA/VA-DCLS-1006/2020|MT952676.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > T18641C,C23208T,G25793T,C27807G +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G17590T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C15352T +USA/UT-00495/2020|MT444543.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > T11131A +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25777T,C29614T (122) > G23311T,G24977C +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25777T,C29614T (122) > G25471C,G28899T,G29779T +England/CAMB-7771E/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4586T +England/CAMB-7DC91/2020|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4321T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1917T (127) > C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1917T (127) > G29431T +Scotland/EDB3598/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T (131) > G22244T,C26461T +Scotland/EDB2451/2020|20-04-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T (131) > T10963A +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G (147) > G2272A,C7267T,G21193T +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G (147) > A5368G,C14220T,G21193T,C29363T +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16260T,C28821A (148) > C5979T,A9337G,C18695T +USA/IL-UW-385/2020|MT772536.1|20-05-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16260T,C28821A (148) > C12525T,G21604T,C25728T,G28378T +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C20555T,C21772T (149) > A6414G,A22101T,G24872T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C20555T,C21772T (149) > C16428T +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20049C,C21627A,C23655T (151) > C11102T,A12174G +USA/UT-03041/2020|MW053962.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20049C,C21627A,C23655T (151) > C22295T,C22323T +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > C13761T +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > A26864T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > C18029T +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > G26828A,C28005T +USA/WA-S2725/2020|MT947550.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C335T,T16425G (156) > G248T,T4138G,C9120T,A12197C,C15951T,G16425T,G22918T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C335T,T16425G (156) > G526C +England/BRIS-128CA3/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > C4586T,C29738T +England/BRIS-12B1CF/2020|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > C7843T,C9438T,T15254C,T16062C +USA/WI-UW-491/2020|MT750074.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T (160) > C2003T,T22825C +USA/WI-UW-522/2020|MT750102.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T (160) > +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25572T (166) > G29747T +AUS/VIC1161/2020|MT451779.1|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25572T (166) > C18744T,C29284T +USA/VA-DCLS-1282/2020|MW067700.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,A28715T (170) > C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T +USA/COVID20-1144/2020|MW067817.1|20-07-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,A28715T (170) > T25577G +Wales/PHWC-1662B6/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C829T,G28371T (173) > G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A +Wales/PHWC-26B12/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C829T,G28371T (173) > +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G840A,C19032T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G12160T +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T (178) > +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T (178) > C9996T,C27498T,G28362C +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T (179) > C1060T,C2358T,C4543T,C9226T,C22227T,T24326C,T25510A,T29171C,G29511T +USA/VA-DCLS-1517/2020|MW197475.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T (179) > A10912G,C12733T +USA/WI-UW-1268/2020|MW035438.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C475T,C5986T,A28389T (180) > C9491T,C12754T,G15100T,C15154T,C20970T,C28657T +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C475T,C5986T,A28389T (180) > C775T,C2488T +Scotland/EDB6146/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18213T,A18818G (183) > T7814C,C11339T,A21137G +Scotland/EDB6052/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18213T,A18818G (183) > +England/CAMB-7FBCF/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A12556G +England/CAMB-784BC/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A13852G +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,A538G,T9107C (188) > T4324G,C23029T,T26543A,A28254G +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,A538G,T9107C (188) > G23426C,A26070G +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G26233T,C27881T (192) > +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G26233T,C27881T (192) > A16766G,T28250G,G28681A +BHR/600023154_S29/2020|MW237743.1|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T (194) > G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T (194) > C21310A +England/PHEC-1C872/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C2453T,C11102T +England/BRIS-130015/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C6361T +England/CAMC-B533A0/2020|20-11-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C875T,A10904G,G25249T,C28854T (206) > C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C +England/MILK-9781E9/2020|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C875T,A10904G,G25249T,C28854T (206) > C1150T,C6525T,C13274T,C18555T,G19962C,C24378T +321398|LR962930.1|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > C22208T +England/QEUH-B8053B/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > G22225T +England/CAMC-A3E658/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C882T,C6990T (213) > T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T +England/MILK-A47DDF/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C882T,C6990T (213) > T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T +IND/GBRC-366a/2020|MT951170.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G28851T (218) > C26058T +IND/GBRC-392b/2020|MT954593.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G28851T (218) > C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T +SAU/596/2020|MT755893.1|20-02-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > A23503G +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > G11417T,G28960T +England/ALDP-EEACDD/2021|21-01-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C3811T,A6608G,A28911T (248) > C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T +England/LIVE-DDCD09/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C3811T,A6608G,A28911T (248) > A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T +USA/VA-DCLS-0229/2020|MT558657.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G28086T (249) > C10582T,C11747T,G25459T,G25555T +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G28086T (249) > C27416T +USA/WA-S1281/2020|MT821642.1|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A2161G,C16376T (253) > G11417T +USA/WA-S2367/2020|MT831837.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A2161G,C16376T (253) > C5758T,T18453C,A28901G +USA/VA-DCLS-0804/2020|MT925987.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1918C,C6402T,C8320T,C12171T (254) > G28079T,G29540A +USA/VA-DCLS-1454/2020|MW067779.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1918C,C6402T,C8320T,C12171T (254) > G9190T,A11782G,G21893A,G26937A +England/MILK-99DB3B/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1154G,G29474T (258) > T5785A,G15705A,G25687T,G27598T +England/ALDP-5D3DEC/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1154G,G29474T (258) > +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > C10741T +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T (282) > G27506T +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T (282) > G23126T,G25775T +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > T2845C (294) > C6500T,C17125T,C21145T,C29708T +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > T2845C (294) > G9805T,G11273A,G17944T +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > G23522A (295) > C24106T,C25162A,C25163A,A26927G +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > G23522A (295) > A25747C +Switzerland/220021/2020|LR882232.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G11842A,A12759G,G18292T (296) > A2679G,C11767T +England/QEUH-96E08F/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G11842A,A12759G,G18292T (296) > G11230T,G13459T,G26450T +England/CAMC-B34141/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C29200T,C29451T (299) > G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T +England/MILK-A795AF/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C29200T,C29451T (299) > C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1191T,C9521A,G29422T,A29567G (301) > C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1191T,C9521A,G29422T,A29567G (301) > C24904T,A26986T +England/CAMC-94C02D/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > C27371T +England/MILK-95DBDD/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > A20667G +Scotland/CVR2213/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > C3411T,C3885T (339) > T3411C,A3413T,A5353G +Scotland/CVR1909/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > C3411T,C3885T (339) > C7279T,A14001G,C26801T +England/PHEC-1555C0/2021|21-01-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T (351) > C673T,A11430G,C21846T,C22995A,C25504G,G25894A +England/MILK-E6578E/2020|20-12-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T (351) > C5184T,A9204G,A10248G,C19975A +England/CAMC-106052A/2021|21-01-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T (352) > C14184T,A15402G,C23170T,C24138A,C24381T,T25303C +England/LOND-12F6633/2020|20-12-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T (352) > G9425T,C21997T,G24116A,C29200T +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C16017T,T27212C,G27561T (410) > C16393T,G18546T,C24718A,C27600T,C29421T +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C16017T,T27212C,G27561T (410) > A10770G +USA/WA-S2264/2020|MT831437.1|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > T242G,C5020T +USA/WA-S1922/2020|MT831459.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > C12528A +England/CAMB-83FF9/2020|20-04-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G10262A,C22995T,A27669G (435) > C8290T,C12242T +England/CAMB-75895/2020|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G10262A,C22995T,A27669G (435) > C4965T,C8956T +England/LOND-D6EBE/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A11839G (439) > C8293T,C16575T +England/SHEF-C88A2/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A11839G (439) > T3037C,C5878T,C7735T,C10645T +USA/WA-S860/2020|MT642111.1|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A23756G (440) > C4886T,C16178T +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A23756G (440) > T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C +England/QEUH-A0AFB4/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28905T (441) > G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C +England/ALDP-C48747/2020|20-12-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28905T (441) > G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C +Switzerland/230051/2020|LR882355.1|20-08-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > T2537G,G12191T,T16479C (445) > T7396C,C14120T,G25471T +Wales/MILK-9C729D/2020|20-09-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > T2537G,G12191T,T16479C (445) > A6659G,C6883T,C13261T,C15774T +England/BRIS-12A70A/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > C25528T (446) > C21077T +England/CAMB-77F61/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > C25528T (446) > G22299A +PHL/UPMNIH_C1/2020|MW243995.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21597T,C29144T (453) > C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T +PHL/COVID-6009/2020|MT919790.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21597T,C29144T (453) > C3736T,T10771C,C13051T,C26305T +England/CAMC-94328A/2020|20-07-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +England/CAMC-9424A3/2020|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T (457) > +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T (457) > G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T +USA/VA-DCLS-1485/2020|MW205988.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C936T,G3259T (461) > C8326T,G21641T,C26681T +USA/VA-DCLS-1212/2020|MW067767.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C936T,G3259T (461) > A20860G,C28087T +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G443A,G28378T (464) > C21614T,C21855T,T23042C +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G443A,G28378T (464) > T6579C +England/QEUH-9AE4E1/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G (466) > C18267T,G29736T +England/OXON-AEBC7/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > C9430T +England/LOND-D4C6B/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A8681G,C10369T +Wales/PHWC-164485/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A16653G +England/ALDP-5C701F/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T (469) > T1863C,T19983C +England/ALDP-51F142/2020|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T (469) > +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6781T,C11916T,C19185T (471) > A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6781T,C11916T,C19185T (471) > A16920G,G25906T +Northern_Ireland/NIRE-10677D/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > G18148A +Northern_Ireland/NIRE-106740/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > C11259T,C26681T +England/MILK-9705F4/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > C15045T +England/ALDP-9B6440/2020|20-08-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > +England/NORW-EE34B/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > G18315A +England/NORW-E8693/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > C1348T,C3653T +Switzerland/250070/2020|LR881870.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11782G,T21570G,T25473C (484) > C512T,T28297C +England/QEUH-9B5344/2020|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11782G,T21570G,T25473C (484) > C27641T,G28913T +England/ALDP-6839B9/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T (485) > A27691T +England/ALDP-6BAB59/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T (485) > C11620T,C22993T +Scotland/QEUH-96C6AD/2020|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C1471T (488) > C19524T,C20759T,G25088T,C26912T,C28292A,C29739T +Switzerland/270108/2020|LR882077.1|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C1471T (488) > G2782T,C15251A,C21034T,C21590T,G23302A +England/ALDP-68EFBC/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T (493) > C23430T +England/ALDP-91F278/2020|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T (493) > A5695G,C10116T,C23855T +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4113T,G21974C,C23191T (494) > C1347T,C6190T,C11758T,C12741T +USA/WI-UW-1202/2020|MW035373.1|20-08-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4113T,G21974C,C23191T (494) > C23910T,G27327T,G28690T +England/LIVE-A2765/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4391A,C15848T,T19893C (496) > C16084T,C19185T,C26625T +England/ALDP-658C87/2020|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4391A,C15848T,T19893C (496) > C1263T,G19254T,C25889T +Northern_Ireland/NIRE-FBB52/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C6114T +England/NORT-283BE4/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C24026T +England/CAMB-81070/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C4698T +DK/AD3_Farm1/2020|MT919525.1|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > A5421G,A22920T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > +England/BRIS-123EDF/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C2509T +England/BRIS-123F09/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C9118T +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C2706T,G9968T,G16647T,T23480G (514) > +Scotland/QEUH-7B078B/2020|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2062T,C5184A,C13887T,C18687T,C23248T (520) > G14055T,C19269T +England/MILK-993EA5/2020|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2062T,C5184A,C13887T,C18687T,C23248T (520) > C10252T,C16733T,G25595T +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G (531) > G28690T +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G (531) > G2534T,G9130A,G29422A +England/QEUH-9600C9/2020|20-08-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T +England/QEUH-9B92F8/2020|20-09-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > C245T,G3250T,C11020T,C11109T,G16377T,C27874T +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A8565C,A28847T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A11023G +England/CAMB-76490/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C27128T (535) > G8171A,A16541G,A17730G +England/CAMB-7CBD1/2020|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C27128T (535) > G960T,G26589C +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G25563C,G28178T (539) > G20134T,C24621A,G28300T +LC573289.2|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G25563C,G28178T (539) > G2305T +USA/WI-UW-114/2020|MT706234.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A14330G,A27989G +England/CAMB-74D5B/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > G18898T (549) > G1323T,T18907G,C21772T +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > G18898T (549) > C823T,C1457T,G3304T,A20055G,C22208T,C29095T +Wales/PHWC-1645BF/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > C22314T,T24796C (550) > C5192T,C12400T,C25710T,C28432T +Wales/PHWC-33C88/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > C22314T,T24796C (550) > G6358A,A14328G,G29736A +USA/WA-S2724/2020|MT947562.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +USA/WA-S2728/2020|MT947566.1|20-07-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +England/BRIS-127363/2020|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17249T,G17722T (553) > G174T,G5572T,G12202T,T16521C +England/BRIS-127A40/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17249T,G17722T (553) > G2659T +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10260G,A10880G (554) > G16197T,C24382T +England/MILK-99DE32/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10260G,A10880G (554) > C2880T,A4044C,C6896T,A8413G,G19086T +England/QEUH-99923A/2020|20-08-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G (561) > G974A,C7267T +England/MILK-825C54/2020|20-07-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G (561) > G680A,C14120T +England/BRIS-125D67/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G18859T (568) > C6347T +England/BRIS-12C841/2020|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G18859T (568) > A14691G,T19473C,T22325C +England/ALDP-95A754/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > T20764C +England/ALDP-95CEA8/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > C14931T +England/MILK-993300/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C8290T,C19367T,C23525T +Wales/PHWC-162751/2020|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > C6312A (577) > G18538T,A20136G +England/ALDP-497D12/2020|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > C6312A (577) > T3334A,A6375G,G24926T,C25665T +USA/WI-UW-982/2020|MT846668.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12488T,C25528T,G27084A (580) > G17964T,G22801T +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12488T,C25528T,G27084A (580) > A22108G,C28344T +USA/FL-QDX-228/2020|MT806770.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A25505C (581) > G675T,C4456T,A21625G +USA/VA-DCLS-0920/2020|MT929088.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A25505C (581) > C8664A,G8851A,C19983T,G29755T +England/ALDP-71D072/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T26156C +England/MILK-9573DB/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T9292C,C21910T +England/QEUH-9B6EAC/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > A29700G +England/NORT-2A4CAE/2020|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > C27945T +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > A3801G,C26985T +Northern_Ireland/NIRE-FB369/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > G25456T +England/LEED-2AA4EC/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C22326T,C27128T +England/LEED-2AA394/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C20941T +England/BRIS-1854318/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C4780T,G22468T +England/BRIS-12E6FA/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C14676T,C17119T +Wales/PHWC-16881C/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C222T,C21780T (593) > C19602T,G29779A +Wales/PHWC-3612C/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C222T,C21780T (593) > C7932T,C8964T,C13274T,C14097T +England/SHEF-C184F/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T (597) > G12907A,C13667T,C22450T,G25687A,T29785A +England/ALDP-9D8FFC/2020|20-09-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T (597) > T20613C +England/NORT-28B1EA/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > C27741T +England/NORT-28B28D/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > A8734G +England/ALDP-5D52BE/2020|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > T28494C +England/ALDP-6FAF24/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > C6633T,C19862T +England/MILK-B01F25/2020|20-10-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A15972G,C19718T,T28759C (601) > C1722T,T3843C,G4300T,A4819G,C10277T,C15720T,C16114T,C17172T,A25351T,C27612T,A29031T,C29555T +Switzerland/210050/2020|LR882268.1|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A15972G,C19718T,T28759C (601) > C203T,T3095C,C12880T,C23896T,C25831T,G28077T,C28603T +England/ALDP-691499/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A23207G (602) > C8650T,A21177G,C28603T +England/ALDP-4A2BFC/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A23207G (602) > A20826G +England/ALDP-9B5BC4/2020|20-08-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G (603) > A9433T,G11837T,C18807T,C21595T,A22024C,C22096T,C25546T +England/ALDP-49F5B8/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G (603) > T21368C +USA/WA-S2573/2020|MT831840.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G (613) > +USA/WA-S2761/2020|MT947580.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G (613) > A5101G,A9830G,A12358T,G25922T +England/QEUH-A9F5D0/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G11447A,C21648T (615) > C5717T,C10138T,C12559T,A19098G,C24130T +England/QEUH-96AEF2/2020|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G11447A,C21648T (615) > G7037T,C12488T +Netherlands/NA_436/2020|LR883367.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > C4824T +AUS/VIC3114/2020|MT972550.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C7600T,G7798T,T23548C (622) > C24912T,T27484C +AUS/VIC9664/2020|MW156172.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C7600T,G7798T,T23548C (622) > C506T,G29072T +England/MILK-9C4087/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,T4369C,T22020C,C27911T (632) > C1938T +England/QEUH-96F349/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,T4369C,T22020C,C27911T (632) > G21606T,C21910T,T21976C,G28230T +England/BIRM-5FC3B/2020|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T (633) > A8390G,C18676T,C19366T,C28311T,G29764A +England/PHEC-13ADF/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T (633) > +England/ALDP-951E49/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C527T,C1962T,C7735T,T23255C,A28065C (636) > C16045T,C28732T +England/ALDP-9557A4/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C527T,C1962T,C7735T,T23255C,A28065C (636) > C19454T,T19538C +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21255C,G28960T (637) > C21364T,C26625T,C28744T +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21255C,G28960T (637) > C21205T +Switzerland/220001/2020|LR882220.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20233T,C22210T (642) > G94T,C5365T,C13708A,A26097G,G28003T +England/BIRM-6BECD/2020|20-11-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20233T,C22210T (642) > G1738T,G4960T,A15477G,C22858T,C23705T,T25312C,C26681T,G27762C,G28056A,G28085T,C28603T,G29449A +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > T3127C +England/ALDP-94A63C/2020|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T10513C,T27851C,C29541T,C29739T (645) > A7291G,C7423T,C9979T,C26447T,C29077T +England/ALDP-52A636/2020|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T10513C,T27851C,C29541T,C29739T (645) > A2756G,C17550T +ZW-6983|LR963462.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > C10341T +ZW-6978|LR963455.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > A13833G +England/ALDP-952A44/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5924A,T21775G (650) > G16852T,G18984T +England/QEUH-9B4A22/2020|20-09-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5924A,T21775G (650) > G2885A,C15026T,G17427T,G19635T,C21846T +Scotland/CVR3062/2020|20-04-24 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C25714T,C26029A (686) > G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C25714T,C26029A (686) > C15274T +England/OXON-B0922/2020|20-03-28 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C28311T (687) > C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C28311T (687) > G17632A +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T (694) > C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T (694) > A4984T,A7854G,A21062G,A28254C +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T (695) > G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T (695) > C6541T,C9988T,T25904C +USA/COVID20-0537/2020|MT981422.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > G12832T (57) > C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > G12832T (57) > A28165G +England/CAMB-83FBD/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > A3103C,C5893T,A28117T (72) > +England/CAMB-1AD004/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > A3103C,C5893T,A28117T (72) > A28356G +England/ALDP-952A53/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18744T,A18978G,A29391G (80) > C1190T,G25273T,C29249T +England/ALDP-95A745/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18744T,A18978G,A29391G (80) > G11708A,C14724T,C17550T +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > A22320G (112) > C3411T,G8114A,C11095T,G15908A +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > A22320G (112) > G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T +USA/UT-05592/2020|MW054143.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > G9705T (113) > A3121C,G23009T,G27637A,C29743T +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > G9705T (113) > C8389T,T19839C,G25523T,T29685G +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G10902A (116) > C7173T,G11596T,C13994T,C25546T +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G10902A (116) > G2659T,C3622T,G7936T,T9379A,A12148G,C18687T +USA/UT-02970/2020|MW053933.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C4878T,A22525G,C29272T,G29449T (119) > A22681C,G28202A +USA/UT-08378/2020|MW206039.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C4878T,A22525G,C29272T,G29449T (119) > C222T,A454G,C11750T,T17772C,G21099T,T29449G +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C775T,C27923T,G28975T (125) > C23683T +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C775T,C27923T,G28975T (125) > C3044T,C9979T,C10369T,G19072T +England/MILK-9934B2/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T (132) > C9246T,C11747T,C13378T,G19056T,C28744T +Switzerland/240029/2020|LR880608.1|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T (132) > T27622C +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > T1171C,A5747G,C10789T,G17259T,G24007A (139) > C10228T,C13335T,T14408C,C25611T,G29705T +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > T1171C,A5747G,C10789T,G17259T,G24007A (139) > C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G +England/MILK-958598/2020|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > C4320T (144) > C5175T,A15283G,G16861T,C20844T,T27539C +England/ALDP-4F4092/2020|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > C4320T (144) > C1627T,C11494T,C14076T,T18309C,G20670A,C29529T +England/LIVE-A91F7/2020|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > T13006C (145) > C19186T +England/CAMB-1AE865/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > T13006C (145) > C1437T,A24070T,C26013T,C27945T +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T (171) > G26730T +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T (171) > C5140T,G29290A +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3231T,A12850G,C21364T,A23064C,C28890T (182) > T16752G,C23064A +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3231T,A12850G,C21364T,A23064C,C28890T (182) > C823T,A9397G,A23362T,G26654T,G29140A +England/ALDP-955F15/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G28907T (196) > G25793A +England/MILK-9A6856/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G28907T (196) > T2533C,T3873G,A8031G,G23126T,C26340T +England/ALDP-94EB75/2020|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A (197) > +England/ALDP-6E2806/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A (197) > T16456G,C27769G +USA/WA-S4490/2021|MW648014.1|21-01-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G (209) > T17607C,G20396A +USA/WA-S3458/2020|MW494078.1|20-12-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G (209) > C3535T +England/MILK-5642D2/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C21614T,G24197T (215) > T1834C,C11783A,C25413T +England/CAMB-1B3593/2020|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C21614T,G24197T (215) > A5829G,C6651T,C8326T,A11730G,T25732G +Switzerland/310517/2020|LR898824.1|20-10-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G5206T,C26885T,G28875T (219) > G370T,A8993G,C14763T,G25690A,C29370T +England/MILK-9AB1A1/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G5206T,C26885T,G28875T (219) > G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T +Scotland/QEUH-A9E7BD/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > A3120C +Scotland/EDB7778/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > C28045T +SAU/578/2020|MT755891.1|20-02-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C27527T,C29421T +Scotland/EDB6640/2020|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T838C,G1729A,C1973T,C2919T,C23191T,T23605C +Scotland/CVR3970/2020|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T8296C,C12076T,G28690T,C28854T (250) > G19846A,G20060T,C22227T,G22332T +England/MILK-A7D5AB/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T8296C,C12076T,G28690T,C28854T (250) > C1929T,C3777T,G8102T,C26165T,C26681T,G28916A +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T (257) > C7162T,G29745A +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T (257) > +Scotland/EDB6391/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T24923C (262) > C12194T,C13968T,C14189T +Scotland/EDB5108/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T24923C (262) > +USA/VA-DCLS-0489/2020|MT951943.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T5941C,A22438T (263) > G21600T,T27672C +USA/VA-DCLS-1388/2020|MW067734.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T5941C,A22438T (263) > G1659A,A4838G,C5548T,C14220T,C14724T +Scotland/QEUH-961BB8/2020|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > C346T,A28959G (264) > C9430T,G23782T,A28336G +Switzerland/250091/2020|LR881897.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > C346T,A28959G (264) > G11521T,T16059C,C23896T,T25078C,T27919C +England/MILK-9750EF/2020|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G2407C,C2902T +England/MILK-9C3D45/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G2407T,G4442T,C6525T,C11494T,G11761T,A16044T,C20468T +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C11575T (290) > G6884A,C13487T,A16840C,C19029T,T22222C,C28115T +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C11575T (290) > A1291G,A2342G,A7291G,T7645C,C7768T +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T (300) > C3397T,C18591T +England/PHEC-14F392/2020|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T (300) > G3527A,T11008C,C13059T,A26594T +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > G12550A,C20740A (340) > C6628T,C18483T +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > G12550A,C20740A (340) > C17977T,G28975T +England/CAMB-737D6/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > A2775G,G4255T,C13568T,A20355G (358) > C6861T +England/CAMB-1B08D9/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > A2775G,G4255T,C13568T,A20355G (358) > C14235T,G25699T +IND/GBRC238b/2020|MT676367.1|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T (413) > T18877C,C22444T,C28887T,T29750C +IND/GBRC209a/2020|MT664202.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T (413) > G25563T +Wales/PHWC-360A7/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > G11801A (433) > T4330C,T24063C +Wales/PHWC-260AA/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > G11801A (433) > T7168C +USA/WA-S2012/2020|MT831128.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28256T,C29784T (436) > T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T +USA/WA-S1775/2020|MT834200.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28256T,C29784T (436) > G13513A +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T +England/ALDP-651C9D/2020|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > C3698T,A28765T +Scotland/CVR3919/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > A22330G +England/QEUH-96E27A/2020|20-08-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T (467) > C936T,G25785T,G28857T +England/MILK-74C001/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T (467) > C21789T,G29779T +England/ALDP-955FAC/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,C27673T (470) > A2130T,C11572T,C19961T,G20006T,C25207T +England/ALDP-49E391/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,C27673T (470) > T26260G +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C (478) > +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C (478) > G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > T22020C,G23628T,C25728T,G26063T (481) > G2155T,C6541T,C10029T,C20844T,A24775C,G28914T +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > T22020C,G23628T,C25728T,G26063T (481) > C6541T,C6606T,G11926A,G27933T,G27990A +England/QEUH-9DE381/2020|20-09-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3323T,C10369T,G18674A (491) > C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G +England/QEUH-95E7D8/2020|20-08-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3323T,C10369T,G18674A (491) > C14177T,C25553T,C28121T +England/NOTT-111E3E/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C (492) > G199T,C9474T,C17163T,G25186T,G29688T +England/NOTT-111117/2020|20-05-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C (492) > +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C2706T,G9968T,G16647T,T23480G (514) > +Scotland/CVR41/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C823T +England/ALDP-9ECEAD/2020|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1437T,G29745T (519) > C3874T,A6659G,T8008C,C27944T +England/BRIS-12DC53/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1437T,G29745T (519) > G4720A,A4928T +England/ALDP-A525BB/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G15438T,G25785T (523) > C1758T,G18337T,G24757T,G28903T,G29260T +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G15438T,G25785T (523) > C541T,C1528T,C2836T,C8905T,A23125T,G28851T +England/MILK-A45AF8/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G19480A (524) > G18985T,C21844T,T23084C,C25318T,G27358T +Scotland/QEUH-A613BF/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G19480A (524) > C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T +Switzerland/180039/2020|LR861669.1|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > C19763T (526) > C1912T,C10252T,C14178T +Switzerland/220022/2020|LR882244.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > C19763T (526) > C2062T,G6877T,T8082C,C13945T,C22687T +England/NORW-E8709/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G1820A,C6541T (530) > A9737G,A29242G +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G1820A,C6541T (530) > A3740G,C12786T,C26333T +England/MILK-A18C8F/2020|20-10-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T (537) > +England/ALDP-C3C1FD/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T (537) > C19264T,T22672C,A23869G,T28340C +Wales/PHWC-15E0B7/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G22627A,G28628T (538) > C1063T,G16117T,C27849T +Wales/PHWC-30957/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G22627A,G28628T (538) > T11654C +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,C14724T,G24262T,G27703T (540) > G5015A +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,C14724T,G24262T,G27703T (540) > G4148T,G5015A,C13620T,G28166A +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T27645A,G27666A (541) > C5979T,G29648T +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T27645A,G27666A (541) > T14127C,T14745G,G19180T,G22154T +England/MILK-ABBCCA/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > T3873C,G3880A (560) > A14144G,T20196C,C23536A +England/MILK-ACCF27/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > T3873C,G3880A (560) > C18131T,G26640T +England/ALDP-907D09/2020|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > C20320T +England/MILK-85E3E4/2020|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > G2144T +Wales/PHWC-16578B/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T5465C,G24102A (567) > A489G,G6387A,C19185T,A25800T,A25801T +Wales/PHWC-166104/2020|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T5465C,G24102A (567) > T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T +England/ALDP-94D8F7/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > A9997C +England/NOTT-111BFB/2020|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > G26426A +England/PORT-2F5752/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G (574) > C18329T,G20062T,C23185T +England/QEUH-96A4C3/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G (574) > G3403T,C5691T +USA/VA-DCLS-1073/2020|MT981458.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > T27846C,C29171T +USA/VA-DCLS-0120/2020|MT482111.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > C10818T,C21998T +England/ALDP-9D9104/2020|20-09-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G (584) > C2462A,C10615T,G27047T +England/CAMC-A40F67/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G (584) > A12529G +England/WSFT-25C13CB/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > +England/PORT-2F5D9C/2020|20-06-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > A5277G +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T (596) > C4551T,G20238T +DV_IZSPB_236_S50|LR992121.1|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T (596) > +England/MILK-62FD59/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G (604) > T17313C,C17502T,C20320T +England/ALDP-90DDC7/2020|20-06-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G (604) > G488T,C1514T,C18744T +USA/IL-UW-1082/2020|MT929034.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C815T,C3411T,G25437T (605) > C2388T,G19656A,C26527T +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C815T,C3411T,G25437T (605) > T10795C,C12374T,C18452T,G25775T,C28153T +USA/WA-S2598/2020|MT831859.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T (610) > G29254T +USA/WA-S1840/2020|MT834024.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T (610) > T5335C,G14186A,C27059T +USA/WA-S1246/2020|MT821587.1|20-05-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,T25783C (611) > C10408T,T21802C,C26022T,C27059T +USA/WA-S820/2020|MT641503.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,T25783C (611) > G17261A +England/CAMB-80B43/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > C2334T,C23121T +England/CAMB-7666D/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > G10870T,C21614T +AUS/VIC13094/2020|MW185501.1|20-07-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > G6662A +AUS/VIC9179/2020|MW153248.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > C18555T,C22987T (624) > G1338C,C5691T,A11425T,C20089T +AUS/VIC11646/2020|MW155572.1|20-07-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > C18555T,C22987T (624) > G6617T +England/CAMC-947259/2020|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C (627) > +England/MILK-9927C9/2020|20-08-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C (627) > T595C,G2659T,G15773A,C21789T,G24197T,G26172T +England/CAMB-1AA438/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T (630) > +England/CAMB-1AFB7A/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T (630) > C6016T,A8031G,C29353T +England/NORT-282796/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > A1755G,C15824T +England/NORT-2839AE/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > G29315T,G29468C +England/QEUH-96E025/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T (639) > T1088C,C20736T +Scotland/QEUH-94375E/2020|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T (639) > G25785T +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20288G,C21721T,C26894T,C28638A (640) > C478T,T2698C,G16068T,G16935T,G20679A,G29227T +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20288G,C21721T,C26894T,C28638A (640) > G2635A,T7426C,A23234G +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C (649) > C28720T +England/MILK-1169960/2021|21-01-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C (649) > T4895C,C9072T,G20578A,G23948C,C24382T,G28209T,A28271G,C29769T +USA/WA-S4100/2021|MW555971.1|21-01-18 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T (688) > G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T (688) > C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +England/ALDP-CB55B4/2020|20-12-20 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C (691) > C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C (691) > G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +Wales/PHWC-340A9/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > C10376T,G18583T,G29773T (71) > G7675T,G18318T,T21745C,C27610T +Wales/PHWC-1667A8/2020|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > C10376T,G18583T,G29773T (71) > C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C +England/PHEC-14F5D8/2020|20-12-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A +Scotland/EDB11343/2020|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > A2692T,C21614T,C26645T (77) > G9049T,C20405T,A25806G +England/LIVE-DAB556/2020|20-10-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T (78) > G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C +England/PHEC-14DE93/2020|20-11-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T (78) > G204T,C6286T,C21614T,C22227T,T26424C +USA/COVID20-0777/2020|MW002812.1|20-06-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G (92) > G4285A,G6421C,C16173T +USA/VA-DCLS-1147/2020|MT992749.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G (92) > G22487C +USA/VA-DCLS-1512/2020|MW197472.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G25947C (93) > G526T,T6949C,C29366T,C29750T +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G25947C (93) > C23685T,G27703T +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T (94) > +ARG/Cordoba-891/2020|MW633900.1|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T (94) > A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C19145T (95) > G4285T,T5059C,C16230T,C23525T,G25471T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C19145T (95) > C5540A +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > T13914C (96) > C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > T13914C (96) > G3638A,C16217T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,G26828T (97) > C18693A +USA/1453xE2/2020|MW521402.1|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,G26828T (97) > G7042T,C11396A,C21855T,G28655T +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A9984C,G25445T (98) > A9935G,T16632C,C19185T,C28824T,G29628T +USA/WA-S2867/2020|MW173410.1|20-09-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A9984C,G25445T (98) > G9278A,G11693T,C14937T,C21017T,C21219T +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G26217T (100) > C21731T,G29645T +England/CAMC-947D3A/2020|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G26217T (100) > G105T,T10288C,C13821T,C26625T,A29752T +USA/IL-UW-1064/2020|MT929016.1|20-07-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T (120) > +USA/VA-DCLS-1666/2020|MW280480.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T (120) > G7936A,A8040G,G29402T +England/RAND-12B3F28/2021|21-02-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T (134) > +England/RAND-12B3CF4/2021|21-02-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T (134) > +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C6843T,T11764C,G29402T (140) > T21294C,G28936A,A29115T +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C6843T,T11764C,G29402T (140) > C13176T,T17040C,C24106T +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T (157) > C1912T,C21058T,G21468T,G25681A,C27603T +USA/WI-UW-994/2020|MT846680.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T (157) > +England/BRIS-12C762/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > G28808T,G29434C (159) > G10096A,G23755T,G24199T +England/BRIS-127AD7/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > G28808T,G29434C (159) > G3638T +England/BRIS-12D9F2/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A20262G +England/BRIS-12B156/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A13707G +England/ALDP-B75065/2020|20-11-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T181C,C8664T,C12525T,C15120T,G28975T (222) > G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A +Scotland/QEUH-AD4AFE/2020|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T181C,C8664T,C12525T,C15120T,G28975T (222) > A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > G25494T (233) > C1593T,C2940T,C10456T,G23611A +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > G25494T (233) > T15585A,C15613T,A24062G,T27484C +England/MILK-EB78C6/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T (244) > C6310T,C10369T +England/CAMC-C44338/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T (244) > T1908C,C2947T,C17550T,C29509T +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T (286) > C16362T +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T (286) > G25775T +Switzerland/300264/2020|LR898541.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > C2706T,C28703G (310) > C2470T,C4084T +England/QEUH-963433/2020|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > C2706T,C28703G (310) > C5339T +England/MILK-ACC08E/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A,C27800A (319) > G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T +Scotland/QEUH-9696CE/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A,C27800A (319) > C2644A,C5221T,C7844T,T24925C,C26985T,C27920T +England/MILK-BB0022/2020|20-11-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C11050A (363) > +England/ALDP-A6CC8C/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C6627T,C25791T,C26270T +Northern_Ireland/NIRE-FB967/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G3242A,G8120C,C21646T,A24205T,G28083T (430) > C4927T,C15738T,C27527T +England/QEUH-7A4BBB/2020|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G3242A,G8120C,C21646T,A24205T,G28083T (430) > C2511T +England/BRIS-185470D/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > +England/BRIS-12AF02/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > G27670T +England/ALDP-9558ED/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,C23854T,G25972A,G27842T (450) > G2398A +England/NORT-286255/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,C23854T,G25972A,G27842T (450) > C5000T,C13883T,C18395T +Switzerland/250060/2020|LR881882.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G9130T,T27319C,G28487A,C28868T (463) > G1186A,C3738T,C16111T,G29706T +England/QEUH-A77F0D/2020|20-10-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G9130T,T27319C,G28487A,C28868T (463) > C6091T,G9389A,G12845A,C18713T,G24095T,G25249T +England/LOND-126DFA5/2020|20-12-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T (472) > C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T +Wales/PHWC-4846A4/2020|20-10-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T (472) > C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T +England/QEUH-AD487C/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T772C,A2869G,C10868T,G15652T,C29095T (483) > C186T,C12025T,C28819T +England/QEUH-9B7B2C/2020|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T772C,A2869G,C10868T,G15652T,C29095T (483) > T14313C,G23438T +England/CAMB-72B44/2020|20-03-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/CAMB-822D3/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +Japan/TKYE627000_2020/2020|LC593811.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > T4346C,C10376T,C14708T,C28725T,G29692T (527) > C7728T +Japan/TKYE624705_2020/2020|LC593810.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > T4346C,C10376T,C14708T,C28725T,G29692T (527) > A158G,C706T,C5974T,A26459G +England/QEUH-9F9265/2020|20-09-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G28396A (529) > C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T +England/QEUH-98EE43/2020|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G28396A (529) > C2453T,G22918T,G27708T +IND/GBRC455b/2020|MW600453.1|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T (533) > G160T,T313C +IND/GBRC455a/2020|MW600436.1|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T (533) > G160T +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,C29769T (545) > C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,C29769T (545) > T28360C +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G (546) > C14805T +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G (546) > C11750T,C18183T,C25731T +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > G26416T (547) > C2044T,C10626T,C11824T,A22052C,C26645T,C29555T +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > G26416T (547) > C1663T,G3155T,A4485G,C5493T,G14020T,C27431T +England/MILK-95862C/2020|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T (565) > G28557T +England/ALDP-94EF88/2020|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T (565) > C2106T,C12073T,C14676T,T20989C +Scotland/QEUH-A00DF0/2020|20-10-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G11230T,G11401T,T24088C (585) > A11546G,C29730G +England/ALDP-9CC5BD/2020|20-09-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G11230T,G11401T,T24088C (585) > C11224T,G28307C +England/ALDP-9BEB16/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A (614) > G14428T +England/ALDP-A95376/2020|20-10-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A (614) > A9436T,C15848T,C17550T,G26153T +England/QEUH-B10460/2020|20-11-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21302T,C21304A,G21305A,G28884T (647) > A15753G,A19655G,G27798T +Scotland/QEUH-96D5CD/2020|20-08-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21302T,C21304A,G21305A,G28884T (647) > C4655T,G5305A,A5958G,C28887T +England/CAMB-1AE7FF/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,G11842T (652) > C6033T +England/CAMB-762D2/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,G11842T (652) > C14757T,G16072T,A19743C,C22498T +USA/WA-S1222/2020|MT821613.1|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > C186T +USA/WA-S1655/2020|MT834136.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > C15240T,C26607T +England/MILK-BB0F16/2020|20-11-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T (37) > G7675T,C12406T +England/CAMC-BBDD4C/2020|20-11-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T (37) > C2939T,C5934T,C21635T,T27988C,C28775T +Scotland/EDB11342/2020|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > A2692T,C21614T,C26645T (77) > A4459G,A18846G +England/QEUH-CAF17D/2020|20-12-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > C9142T,C19524T +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C2395T,T2597C,A12878G,G17014T,G21600T,G22018T,T22917G,T24349C,C26681T,G27890T,A28272T,C29362T (137) > T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C2395T,T2597C,A12878G,G17014T,G21600T,G22018T,T22917G,T24349C,C26681T,G27890T,A28272T,C29362T (137) > A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T +Scotland/QEUH-969725/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A (198) > C2135T,G23856T +England/QEUH-AD1648/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A (198) > C1514T,T6141A,C11490T,G13397T,C27577T +England/MILK-A192C8/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C,T7292C,T8410C,C10833T,C11572T,C16293T,T23986C (226) > A538G,A1098C,C2910T,G9092A +England/QEUH-9F3FDD/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C,T7292C,T8410C,C10833T,C11572T,C16293T,T23986C (226) > +England/CAMC-1263B05/2021|21-02-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A (234) > G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A +England/QEUH-AD3822/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A (234) > G2035T,A2805G,C18555T,C21365T +England/MILK-9A94E6/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T (236) > C7764T,C27059T,G27806T,C28087T +England/MILK-566C5A/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T (236) > +England/CAMC-C2CDFC/2020|20-12-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > T3366C +England/MILK-CAA0EE/2020|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > C28411T +England/TFCI-26FA9B7/2020|20-12-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > +England/MILK-B94ACC/2020|20-11-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > C15237T +England/QEUH-96A29C/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > G21204T,G29692T (246) > C15654T +England/ALDP-9EA6D4/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > G21204T,G29692T (246) > C8240T,C8357T +England/MILK-A6AEC4/2020|20-10-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > C26534T (247) > C2910T,C16393T,A19387G,G20491A,C24378T +England/MILK-B889A0/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > C26534T (247) > A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T +England/MILK-ACEE55/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T2113C,G9190T,G28851C (261) > C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T +Switzerland/260079/2020|LR882418.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T2113C,G9190T,G28851C (261) > C842T,T1359C,C10702T,C11109T,C25886T,C27429T +USA/WI-UW-1288/2020|MW035458.1|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G2258A,A6441G,C8140T,A9204G,C29445T (302) > C884T +USA/WA-S2808/2020|MW077495.1|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G2258A,A6441G,C8140T,A9204G,C29445T (302) > A19137T,C19366T,G29384T +England/CAMC-B3582D/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A,C27800A (319) > G18186T,C28854T (334) > A9859G,C14531T +England/MILK-A796E8/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A,C27800A (319) > G18186T,C28854T (334) > G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T +England/MILK-BB0031/2020|20-11-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C11050A (363) > +Scotland/QEUH-96B4E0/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T12226C (364) > C3093T,C11102T,C18555T +England/PHEC-152C73/2020|20-11-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C21682T +England/MILK-9AA782/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T12226C (364) > C16362T,C19164T,G21786T,C24904T +England/ALDP-B82A0D/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > C4456T +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > G8015A,C9803T,C25797T +England/MILK-A79D10/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T (458) > C4113T,T17214C,C19324A,G28044T +England/PHEC-148F95/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T (458) > C2644T,C9319T,G13348T,C19113A +England/MILK-A180DE/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G (466) > A4764G,C21952T,G26257A +England/NORW-222D0F/2020|20-12-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T (480) > C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T +England/MILK-F72F49/2021|21-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T (480) > C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T +England/ALDP-94DD07/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2447T,G22199T (502) > G3164T,C7528T,G20569T,C29625T +England/ALDP-49EC3C/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2447T,G22199T (502) > G29392T,C29541T +PER/covper024/2020|MW030255.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > C17436T,G27478T +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > A10323G,G27160T +PER/covper011/2020|MW030242.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > A21131G (504) > C3768T,C14265T,G17721T,C27213T,C27513T +PER/covper040/2020|MW030271.1|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > A21131G (504) > C12854T,G20752T +England/MILK-B1553B/2020|20-10-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C18747T (505) > C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A +England/MILK-66F889/2020|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C18747T (505) > G14547A,G14869A,A24879G,C29421T +England/QEUH-96BAA2/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T (508) > G1042T,C8895T,G25250T +Wales/ALDP-B19FFD/2020|20-11-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T (508) > G922T,T10369C,A23064C,G23608T,C28453T,C29642T +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T (509) > +PER/covper018/2020|MW030249.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T (509) > G3755T,G11552T,A28356G +England/CAMC-C3E586/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T (518) > C3736T,C6336T,G19735T,G23611T,C26735T,C26858T +England/CAMC-DE5550/2020|20-12-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T (518) > G6320T,C10582T,C12194T,C25603T +Japan/TKYE630414_2020/2020|LC593818.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C8917T,C18167T,G21518T,G27604A,G28975T,C29679T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_14_sample_names.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1096 @@ +England/BRIS-1853249/2020|20-04-02 +Wales/PHWC-25B04/2020|20-03-24 +NPL/61-TW/2020|MT072688.1|20-01-13 +Wales/LIVE-A6831/2020|20-03-16 +Scotland/EDB1317/2020|20-04-09 +Scotland/EDB354/2020|20-03-30 +England/SHEF-BFF8B/2020|20-03-25 +England/LCST-24D7202/2020|20-06-22 +England/SHEF-BFFC7/2020|20-03-25 +England/PHEC-1E01E/2020|20-04-03 +DP0476/2020|LC571003.1|20-02-16 +DP0191/2020|LC570980.1|20-02-15 +England/LIVE-A5D06/2020|20-03-17 +England/LIVE-A065B/2020|20-05-27 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 +NED/NB02_13KS/2020|MT457397.1|20-04-29 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 +England/BRIS-1258A2/2020|20-03-29 +England/SHEF-BFEBB/2020|20-03-24 +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 +England/LIVE-9E66F/2020|20-04-10 +Scotland/CVR705/2020|20-03-26 +England/SHEF-BFF21/2020|20-03-25 +England/LIVE-A4C46/2020|20-03-12 +Switzerland/100159/2020|LR884273.1|20-03-16 +England/EXET-135818/2020|20-04-11 +France/40002VJ/2020|MT470179.1|20-03 +Wales/PHWC-310CA/2020|20-04-11 +Scotland/GCVR-171160/2020|20-03-26 +England/BRIS-130E2A/2020|20-03-24 +USA/WI-UW-298/2020|MT706406.1|20-04-13 +USA/WI-UW-314/2020|MT706422.1|20-04-16 +USA/WI-UW-325/2020|MT706432.1|20-04-24 +USA/WI-UW-290/2020|MT706398.1|20-04-08 +Scotland/CVR3488/2020|20-05-12 +Scotland/CVR780/2020|20-03-27 +Scotland/EDB5629/2020|20-03-24 +HKG/HKU-904a/2020|MT365032.1|20-01-30 +Scotland/EDB5040/2020|20-04-02 +England/LOND-126031F/2020|20-03-15 +Scotland/EDB046/2020|20-03-15 +England/BRIS-12EEB6/2020|20-04-22 +Scotland/EDB199/2020|20-03-26 +England/CAMB-74A09/2020|20-03-18 +England/ALDP-9EE3AC/2020|20-05-06 +USA/WA3-UW1/2020|MT163716.1|20-02-27 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 +England/ALDP-52C0FA/2020|20-06-01 +England/LIVE-9D7D6/2020|20-04-15 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 +Japan/TKYE64688_2020/2020|LC581375.1|20-03 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 +USA/DC-HP00063/2020|MT646075.1|20-03-13 +England/PHEC-1A601/2020|20-03-04 +England/PHEC-2275E/2020|20-06-22 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +Wales/PHWC-285F4/2020|20-04-01 +England/BRIS-130965/2020|20-04-13 +Scotland/CVR44/2020|20-03-13 +Scotland/CVR839/2020|20-03-27 +Scotland/GCVR-170107/2020|20-03-23 +Scotland/CVR207/2020|20-03-18 +England/CAMB-8042A/2020|20-04-10 +England/CAMB-737B8/2020|20-03-30 +USA/WA-S885/2020|MT642386.1|20-04-22 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 +England/BRIS-1265AA/2020|20-04-10 +AUS/NT38/2020|MT641726.1|20 +England/BRIS-123965/2020|20-04-07 +IND/Isolate_9088/2020|MW555597.1|20-06-30 +England/BRIS-125347/2020|20-03-27 +IND/763/2020|MT577009.1|20 +England/CAMB-7772D/2020|20-03-31 +England/BRIS-12208F/2020|20-03-21 +Scotland/EDB1824/2020|20-04-16 +Spain/H12_46/2020|LR884009.1|20-04-08 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +Spain/R10_33/2020|LR884127.1|20-03-02 +AUS/VIC1255/2020|MT451830.1|20-04-11 +AUS/VIC1878/2020|MT745600.1|20-03-29 +England/NORT-284A9B/2020|20-03-25 +Scotland/CVR10/2020|20-03-10 +England/CAMB-75BD8/2020|20-03-29 +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 +USA/WI-UW-26/2020|MT706147.1|20-03-24 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 +USA/WI-UW-558/2020|MT750137.1|20-06-25 +AUS/VIC2260/2020|MT972173.1|20-06-22 +England/EXET-1358BE/2020|20-04-15 +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 +Switzerland/100198/2020|LR884312.1|20-03-17 +England/NOTT-10E1B3/2020|20-03-19 +USA/WI-UW-37/2020|MT706158.1|20-03-22 +Scotland/CVR2927/2020|20-04-22 +Scotland/GCVR-173C30/2020|20-04-07 +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 +Switzerland/140091/2020|LR824563.1|20-04-18 +England/BRIS-12755E/2020|20-04-22 +England/BRIS-12468B/2020|20-04-09 +England/NORW-E9DF7/2020|20-05-02 +Scotland/EDB156/2020|20-03-23 +Wales/PHWC-27B20/2020|20-03-30 +Wales/PHWC-2624A/2020|20-03-27 +Wales/PHWC-2BF8A/2020|20-04-02 +Wales/PHWC-29E43/2020|20-04-04 +England/LOND-D3534/2020|20-03-27 +England/PHEC-20C24/2020|20-04-21 +England/CAMB-7D2EA/2020|20-04-06 +England/LIVE-A63E5/2020|20-03-18 +Wales/PHWC-260C8/2020|20-03-26 +England/BRIS-12F969/2020|20-03-30 +England/PHEC-2083F/2020|20-04-13 +Wales/PHWC-16C6F0/2020|20-06-09 +Wales/PHWC-27461/2020|20-03-31 +Wales/PHWC-29F13/2020|20-04-01 +IND/GBRC99/2020|MT509504.1|20-05-06 +IND/GBRC31/2020|MT467247.1|20-04-29 +AUS/VIC1239/2020|MT451821.1|20-04-02 +AUS/VIC1282/2020|MW153048.1|20-04-08 +IND/GBRC128/2020|MT539172.1|20-05-02 +IND/GBRC123/2020|MT539176.1|20-05-02 +POL/PL_MCB_32/2020|MW273814.1|20-04-22 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +England/CAMB-7BED9/2020|20-04-04 +Netherlands/NA_302/2020|LR878041.1|20-04-01 +USA/WI-UW-1385/2020|MW035549.1|20-09-06 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 +GRC/202_32984/2020|MT459870.1|20-03-12 +USA/FHCRC-19442/2020|MW593677.1|20-07-30 +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 +Wales/PHWC-31CB7/2020|20-04-14 +Wales/PHWC-26D2B/2020|20-03-30 +MYS/188407/2020|MT372480.1|20-03-18 +AUS/VIC961/2020|MT451653.1|20-03-27 +Spain/R11/2020|LR884126.1|20-03-06 +Spain/LP19_4952/2020|LR884066.1|20-03-07 +USA/COVID20-0008/2020|MT764174.1|20-03-10 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 +England/CAMB-76515/2020|20-03-29 +England/CAMB-1AE294/2020|20-04-27 +England/LEED-2A8D10/2020|20-03-31 +England/CAMB-1AC6F4/2020|20-04-21 +Scotland/EDB2049/2020|20-04-18 +England/CAMB-7EBDF/2020|20-04-07 +Scotland/CVR3417/2020|20-05-07 +Scotland/CVR1519/2020|20-04-03 +England/MILK-93B73B/2020|20-06-21 +England/MILK-9589F6/2020|20-06-15 +England/BRIS-128441/2020|20-04-16 +England/CAMB-7C39D/2020|20-04-13 +England/ALDP-50085E/2020|20-06-27 +England/PHEC-127E8/2020|20-03-28 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 +USA/WI-UW-1105/2020|MT929055.1|20-07-24 +USA/RML-22/2020|MW221270.1|20-08-30 +Scotland/CVR2931/2020|20-04-22 +Scotland/GCVR-172150/2020|20-03-30 +England/BRIS-124885/2020|20-03-24 +England/BRIS-122C4F/2020|20-04-02 +USA/WI-UW-1046/2020|MT928999.1|20-07-29 +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 +Scotland/CVR3054/2020|20-04-24 +England/MILK-95698F/2020|20-06-06 +England/CAMB-79ECC/2020|20-04-01 +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 +USA/AK-PHL414/2020|MT946886.1|20-06-03 +USA/AK-PHL689/2020|MW173160.1|20-06-29 +England/MILK-974596/2020|20-08-17 +Switzerland/310363/2020|LR898676.1|20-10-07 +England/MILK-978626/2020|20-07-30 +England/MILK-9A565D/2020|20-09-03 +USA/NM-QDX-264/2020|MT806796.1|20-04-30 +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 +Scotland/EDB1198/2020|20-04-08 +England/PHEC-20A84/2020|20-04-20 +Scotland/EDB6324/2020|20-06-01 +Scotland/EDB4579/2020|20-05-06 +Wales/PHWC-360E3/2020|20-04-26 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 +Netherlands/NA_289/2020|LR878031.1|20-03-31 +France/10065EE/2020|MT470176.1|20-03 +France/10036BG/2020|MT470106.1|20-03 +IHUCOVID-0033|LR794417.1|? +England/PORT-2D0D4C/2020|20-04-27 +Switzerland/100210/2020|LR884314.1|20-03-18 +POL/PL_MCB_72/2020|MW273854.1|20-05-10 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 +England/QEUH-9CE80D/2020|20-09-17 +England/QEUH-990752/2020|20-08-29 +AUS/VIC38/2020|MT450953.1|20-03-11 +IHUCOVID-0133|LR794459.1|? +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 +Switzerland/101166/2020|LR824397.1|20-03-31 +Switzerland/100154/2020|LR824311.1|20-03-16 +PER/covper020/2020|MW030251.1|20-07-03 +PER/covper091/2020|MW030227.1|20-03-17 +England/ALDP-49A5AE/2020|20-06-13 +England/ALDP-4A2A77/2020|20-05-22 +Wales/PHWC-16930B/2020|20-04-01 +Wales/PHWC-34285/2020|20-04-14 +USA/UT-08320/2020|MW206019.1|20-05-15 +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 +England/QEUH-B2DD0B/2020|20-11-03 +England/MILK-A7B0BB/2020|20-10-14 +AUS/VIC989/2020|MT451674.1|20-03-31 +AUS/VIC1056/2020|MT451723.1|20-04-03 +England/BRIS-12B2BD/2020|20-05-02 +England/BRIS-128DCE/2020|20-04-14 +Scotland/GCVR-1725BE/2020|20-04-04 +Scotland/CVR30/2020|20-03-13 +England/NORT-289814/2020|20-04-01 +England/ALDP-9ED57A/2020|20-05-08 +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 +Scotland/CVR129/2020|20-03-13 +Scotland/CVR52/2020|20-03-14 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/CAMC-947875/2020|20-07-13 +GHA/34927_S20/2020|MT890226.1|20-05-23 +GHA/35563_S37/2020|MT890230.1|20-05-24 +England/CAMC-C91F38/2020|20-12-11 +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 +Scotland/EDB2100/2020|20-04-19 +England/CAMB-1AC7D3/2020|20-04-22 +Scotland/CVR2381/2020|20-04-13 +Scotland/CVR2197/2020|20-04-11 +England/NORW-E8C37/2020|20-04-13 +England/NORW-E75A6/2020|20-05-04 +Wales/PHWC-3122E/2020|20-04-10 +Wales/PHWC-1645EC/2020|20-05-10 +England/ALDP-9ED9F6/2020|20-05-05 +England/ALDP-944BD9/2020|20-06-07 +England/LEED-2A91D7/2020|20-04-06 +England/LEED-2A87C7/2020|20-04-03 +USA/WA-UW-4105/2020|MT358746.1|20-03-31 +USA/WA-UW-2220/2020|MT345839.1|20-03-23 +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 +Wales/PHWC-1658A6/2020|20-05-19 +Wales/PHWC-2E0A2/2020|20-04-10 +Scotland/EDB3137/2020|20-04-06 +Scotland/EDB2810/2020|20-03-30 +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 +USA/WI-UW-1092/2020|MT929042.1|20-07-27 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 +USA/WA-S1266/2020|MT821676.1|20-05-13 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 +USA/DC-HP00089/2020|MT509482.1|20-03-31 +USA/UT-03817/2020|MT873871.1|20-04-03 +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 +England/OXON-B15A5/2020|20-04-29 +England/BRIS-129D72/2020|20-04-15 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 +England/BRIS-12BF3E/2020|20-05-09 +England/BRIS-12DF1E/2020|20-06-04 +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 +England/PHEC-15A73/2020|20-03-29 +USA/CA-QDX-796/2020|MW064788.1|20-03-23 +B90|LR898037.1|? +O9|LR963074.1|? +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 +USA/WI-UW-738/2020|MT772509.1|20-06-30 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 +England/CAMC-946515/2020|20-07-15 +USA/WI-UW-249/2020|MT706376.1|20-03-16 +USA/WI-UW-84/2020|MT706205.1|20-03-24 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 +USA/UT-04888/2020|MW084559.1|20-05-26 +USA/UT-04282/2020|MW084509.1|20-05-14 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 +Wales/PHWC-15DFD9/2020|20-05-14 +Wales/PHWC-2AF12/2020|20-04-06 +IHUCOVID-0441|LR794655.1|? +IHUCOVID-0428|LR794641.1|? +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +USA/UT-01683/2020|MT536956.1|20-04-13 +USA/UT-03892/2020|MT711875.1|20-04-13 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 +England/NORW-E7EBA/2020|20-05-06 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 +USA/WI-UW-413/2020|MT772562.1|20-04-07 +USA/WI-UW-288/2020|MT706396.1|20-04-08 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 +BHR/740704818/2021|MW661071.1|21-01-26 +England/QEUH-E93C6A/2021|21-01-04 +Scotland/EDB3341/2020|20-04-08 +Scotland/EDB6880/2020|20-04-30 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 +England/ALDP-B252AA/2020|20-11-04 +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 +England/LOND-D5444/2020|20-04-15 +Scotland/CVR3238/2020|20-04-26 +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 +Scotland/EDB3662/2020|20-04-28 +England/ALDP-6FB8FB/2020|20-06-29 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 +England/LIVE-A00F3/2020|20-06-04 +England/QEUH-544733/2020|20-05-14 +England/MILK-654007/2020|20-07-04 +England/OXON-B1781/2020|20-05-04 +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +England/MILK-977645/2020|20-07-24 +England/CAMC-B325A1/2020|20-11-05 +England/PHEC-224A2/2020|20-06-08 +England/NORW-ECD21/2020|20-05-29 +England/NORW-E755B/2020|20-05-04 +IND/nimh-19510/2020|MW181843.1|20-05-16 +IND/GBRC174b/2020|MT607610.1|20-06-05 +Scotland/CVR3629/2020|20-05-24 +Scotland/QEUH-5456F9/2020|20-05-13 +Switzerland/240009/2020|LR880588.1|20-08-07 +Switzerland/240084/2020|LR880634.1|20-08-12 +England/LIVE-A65EF/2020|20-03-19 +Wales/PHWC-2B7CE/2020|20-04-12 +England/ALDP-94D8D9/2020|20-06-20 +England/ALDP-9442D4/2020|20-06-07 +England/PORT-2D3B4F/2020|20-04-18 +England/EXET-136EE8/2020|20-04-20 +England/PHEC-215FB/2020|20-04-29 +England/PHEC-1B7C1/2020|20-04-08 +Switzerland/120182/2020|LR860799.1|20-04-27 +England/ALDP-9545BA/2020|20-06-17 +England/BRIS-12F78D/2020|20-03-10 +Switzerland/100802/2020|LR824314.1|20-03-25 +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 +England/PHEC-20E4C/2020|20-04-16 +England/NORT-283B7B/2020|20-04-02 +England/ALDP-95665B/2020|20-06-08 +England/CAMB-7767B/2020|20-03-31 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +England/SHEF-C9FBB/2020|20-04-11 +England/LOND-D6531/2020|20-04-22 +England/MILK-99D597/2020|20-08-30 +Scotland/EDB6515/2020|20-06-15 +FRA/Env-Di/2020|MT709105.1|20-05-14 +AUS/VIC1786/2020|MT612326.1|20-05-27 +England/CAMB-7620F/2020|20-03-30 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 +England/PHEC-1DF03/2020|20-04-08 +England/CAMB-1AB21F/2020|20-04-18 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 +England/PHEC-16F19/2020|20-03-31 +England/GSTT-265D4DF/2020|20-03-19 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 +England/BRIS-124C89/2020|20-03-26 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 +England/LOND-D53CF/2020|20-04-15 +Scotland/EDB5196/2020|20-05-18 +Scotland/CVR3185/2020|20-04-28 +England/CAMB-83A9E/2020|20-04-15 +England/EXET-136ED9/2020|20-04-22 +England/ALDP-955D39/2020|20-06-12 +Switzerland/300258/2020|LR898536.1|20-10-01 +England/SHEF-D1D3E/2020|20-04-22 +England/SHEF-CBE43/2020|20-04-26 +England/ALDP-90D6AE/2020|20-06-24 +POL/PL_P12/2020|MT511068.1|20-03-31 +England/MILK-9E2BDD/2020|20-09-20 +Northern_Ireland/NIRE-1088C3/2020|20-09-13 +England/PHEC-219E0/2020|20-05-01 +England/LEED-2AA59E/2020|20-04-06 +England/MILK-8664D7/2020|20-07-17 +England/MILK-629D13/2020|20-07-05 +England/SHEF-C13B7/2020|20-05-19 +England/SHEF-10B2E79/2020|20-05-16 +England/OXON-AEF9E/2020|20-04-07 +Wales/PHWC-162E7A/2020|20-05-19 +England/ALDP-954C6A/2020|20-06-13 +England/ALDP-A524EB/2020|20-10-07 +Wales/ALDP-6C3E72/2020|20-07-01 +England/ALDP-5A15D0/2020|20-06-14 +England/PHEC-20B81/2020|20-04-16 +England/MILK-992E97/2020|20-08-26 +England/QEUH-95DD9B/2020|20-08-07 +England/MILK-9570D4/2020|20-06-10 +England/LIVE-9BC33/2020|20-04-21 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 +England/CAMB-1B087F/2020|20-05-04 +England/PHEC-2223F/2020|20-04-30 +England/ALDP-5A2A49/2020|20-06-14 +England/ALDP-5A2D6E/2020|20-06-14 +USA/WA-S1407/2020|MT821568.1|20-05-19 +USA/WA-S1434/2020|MT821707.1|20-05-21 +Scotland/CVR1557/2020|20-04-03 +Wales/PHWC-34610/2020|20-04-21 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 +England/CAMB-82060/2020|20-04-21 +England/CAMB-82E1B/2020|20-04-14 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 +Scotland/EDB300/2020|20-03-29 +Scotland/CVR3194/2020|20-04-28 +England/BIRM-6529A/2020|20-09-30 +USA/WA-S2831/2020|MW077478.1|20-09-08 +IND/GBRC203a/2020|MT669321.1|20-06-07 +USA/WA-S2809/2020|MW077484.1|20-08-31 +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +England/CAMC-946506/2020|20-07-15 +AUS/VIC2173/2020|MT972184.1|20-06-24 +England/SHEF-D1CE6/2020|20-04-28 +England/SHEF-C0F96/2020|20-04-15 +Netherlands/NA_359/2020|LR883961.1|20-04-07 +Netherlands/NA_589/2020|LR883868.1|20-04-05 +England/ALDP-BCA4B0/2020|20-11-23 +England/ALDP-119985B/2021|21-01-27 +USA/WI-UW-06/2020|MT772088.1|20-03-21 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 +USA/WA-S3017/2020|MW474188.1|20-08-15 +USA/WA-S2852/2020|MW079820.1|20-09-01 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 +USA/WI-UW-269/2020|MT429191.1|20-04-06 +England/CAMB-7A7DF/2020|20-04-02 +Netherlands/NA_18/2020|LR878352.1|20-03-09 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 +USA/UT-02231/2020|MT444626.1|20-04-15 +USA/WA-S2850/2020|MW079819.1|20-09-01 +USA/WA-S2746/2020|MT947577.1|20-07-19 +USA/WI-UW-879/2020|MT846567.1|20-07-14 +USA/UT-05590/2020|MW084605.1|20-06-01 +Netherlands/NA_588/2020|LR883860.1|20 +Netherlands/NA_583/2020|LR883819.1|20 +USA/WA-S2992/2020|MW474166.1|20-08-12 +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 +USA/WI-UW-1126/2020|MT929103.1|20-08-13 +USA/WI-UW-1071/2020|MT929023.1|20-07-29 +USA/VA-DCLS-0481/2020|MT951936.1|20-05 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +KOR/YS006/2020|MW345824.1|20-06-04 +KOR/YS008/2020|MW345825.1|20-06-07 +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 +USA/WA-S1037/2020|MT642186.1|20-05-03 +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 +USA/VA-DCLS-1006/2020|MT952676.1|20-06 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 +USA/UT-00495/2020|MT444543.1|20-04-02 +USA/UT-00353/2020|MT444564.1|20-03-27 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 +England/CAMB-7771E/2020|20-03-30 +England/CAMB-7DC91/2020|20-04-05 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 +Scotland/EDB3598/2020|20-04-27 +Scotland/EDB2451/2020|20-04-23 +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 +USA/IL-UW-385/2020|MT772536.1|20-05-23 +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 +USA/UT-03041/2020|MW053962.1|20-05-01 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 +USA/WA-S2725/2020|MT947550.1|20-07-07 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 +England/BRIS-128CA3/2020|20-04-14 +England/BRIS-12B1CF/2020|20-05-15 +USA/WI-UW-491/2020|MT750074.1|20-06-11 +USA/WI-UW-522/2020|MT750102.1|20-06-24 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 +AUS/VIC1161/2020|MT451779.1|20-04-09 +USA/VA-DCLS-1282/2020|MW067700.1|20-08 +USA/COVID20-1144/2020|MW067817.1|20-07-10 +Wales/PHWC-1662B6/2020|20-06-13 +Wales/PHWC-26B12/2020|20-03-29 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 +USA/VA-DCLS-1517/2020|MW197475.1|20-07 +USA/WI-UW-1268/2020|MW035438.1|20-08-25 +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 +Scotland/EDB6146/2020|20-05-14 +Scotland/EDB6052/2020|20-05-08 +England/CAMB-7FBCF/2020|20-04-16 +England/CAMB-784BC/2020|20-04-06 +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 +BHR/600023154_S29/2020|MW237743.1|20-10-14 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 +England/PHEC-1C872/2020|20-04-16 +England/BRIS-130015/2020|20-04-11 +England/CAMC-B533A0/2020|20-11-08 +England/MILK-9781E9/2020|20-07-29 +321398|LR962930.1|20-10-13 +England/QEUH-B8053B/2020|20-11-14 +England/CAMC-A3E658/2020|20-10-05 +England/MILK-A47DDF/2020|20-10-05 +IND/GBRC-366a/2020|MT951170.1|20-06-18 +IND/GBRC-392b/2020|MT954593.1|20-07-06 +SAU/596/2020|MT755893.1|20-02-18 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 +England/ALDP-EEACDD/2021|21-01-03 +England/LIVE-DDCD09/2021|21-01-02 +USA/VA-DCLS-0229/2020|MT558657.1|20-04 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 +USA/WA-S1281/2020|MT821642.1|20-05-12 +USA/WA-S2367/2020|MT831837.1|20-06-11 +USA/VA-DCLS-0804/2020|MT925987.1|20-07 +USA/VA-DCLS-1454/2020|MW067779.1|20-08 +England/MILK-99DB3B/2020|20-08-31 +England/ALDP-5D3DEC/2020|20-06-19 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 +Switzerland/220021/2020|LR882232.1|20-07-27 +England/QEUH-96E08F/2020|20-08-18 +England/CAMC-B34141/2020|20-11-05 +England/MILK-A795AF/2020|20-10-14 +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 +England/CAMC-94C02D/2020|20-07-15 +England/MILK-95DBDD/2020|20-06-20 +Scotland/CVR2213/2020|20-04-11 +Scotland/CVR1909/2020|20-04-06 +England/PHEC-1555C0/2021|21-01-16 +England/MILK-E6578E/2020|20-12-30 +England/CAMC-106052A/2021|21-01-16 +England/LOND-12F6633/2020|20-12-15 +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 +USA/WA-S2264/2020|MT831437.1|20-06-09 +USA/WA-S1922/2020|MT831459.1|20-06-03 +England/CAMB-83FF9/2020|20-04-25 +England/CAMB-75895/2020|20-03-18 +England/LOND-D6EBE/2020|20-04-03 +England/SHEF-C88A2/2020|20-04-21 +USA/WA-S860/2020|MT642111.1|20-04-24 +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 +England/QEUH-A0AFB4/2020|20-10-01 +England/ALDP-C48747/2020|20-12-12 +Switzerland/230051/2020|LR882355.1|20-08-04 +Wales/MILK-9C729D/2020|20-09-12 +England/BRIS-12A70A/2020|20-05-01 +England/CAMB-77F61/2020|20-04-01 +PHL/UPMNIH_C1/2020|MW243995.1|20-07 +PHL/COVID-6009/2020|MT919790.1|20-07-18 +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 +USA/VA-DCLS-1485/2020|MW205988.1|20-07 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 +England/QEUH-9AE4E1/2020|20-09-01 +England/OXON-AEBC7/2020|20-04-12 +England/LOND-D4C6B/2020|20-04-15 +Wales/PHWC-164485/2020|20-05-02 +England/ALDP-5C701F/2020|20-06-19 +England/ALDP-51F142/2020|20-06-02 +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 +Northern_Ireland/NIRE-10677D/2020|20-05-14 +Northern_Ireland/NIRE-106740/2020|20-05-14 +England/MILK-9705F4/2020|20-08-18 +England/ALDP-9B6440/2020|20-08-28 +England/NORW-EE34B/2020|20-03-24 +England/NORW-E8693/2020|20-04-16 +Switzerland/250070/2020|LR881870.1|20-08-18 +England/QEUH-9B5344/2020|20-09-02 +England/ALDP-6839B9/2020|20-07-02 +England/ALDP-6BAB59/2020|20-06-29 +Scotland/QEUH-96C6AD/2020|20-08-07 +Switzerland/270108/2020|LR882077.1|20-09-03 +England/ALDP-68EFBC/2020|20-07-02 +England/ALDP-91F278/2020|20-06-23 +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 +USA/WI-UW-1202/2020|MW035373.1|20-08-06 +England/LIVE-A2765/2020|20-05-20 +England/ALDP-658C87/2020|20-07-03 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 +England/NORT-283BE4/2020|20-04-03 +England/CAMB-81070/2020|20-04-20 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +England/BRIS-123EDF/2020|20-04-08 +England/BRIS-123F09/2020|20-04-08 +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +Scotland/QEUH-7B078B/2020|20-07-19 +England/MILK-993EA5/2020|20-08-22 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 +England/QEUH-9600C9/2020|20-08-05 +England/QEUH-9B92F8/2020|20-09-07 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 +England/CAMB-76490/2020|20-03-30 +England/CAMB-7CBD1/2020|20-04-05 +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 +LC573289.2|20-06 +USA/WI-UW-114/2020|MT706234.1|20-03-30 +England/CAMB-74D5B/2020|20-03-19 +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 +Wales/PHWC-1645BF/2020|20-05-06 +Wales/PHWC-33C88/2020|20-04-17 +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +England/BRIS-127363/2020|20-04-24 +England/BRIS-127A40/2020|20-04-17 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 +England/MILK-99DE32/2020|20-08-31 +England/QEUH-99923A/2020|20-08-24 +England/MILK-825C54/2020|20-07-16 +England/BRIS-125D67/2020|20-03-29 +England/BRIS-12C841/2020|20-05-12 +England/ALDP-95A754/2020|20-06-13 +England/ALDP-95CEA8/2020|20-06-15 +England/MILK-993300/2020|20-08-26 +Wales/PHWC-162751/2020|20-05-27 +England/ALDP-497D12/2020|20-06-03 +USA/WI-UW-982/2020|MT846668.1|20-07-21 +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 +USA/FL-QDX-228/2020|MT806770.1|20-04-18 +USA/VA-DCLS-0920/2020|MT929088.1|20-05 +England/ALDP-71D072/2020|20-07-01 +England/MILK-9573DB/2020|20-06-10 +England/QEUH-9B6EAC/2020|20-09-09 +England/NORT-2A4CAE/2020|20-09-17 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 +Northern_Ireland/NIRE-FB369/2020|20-08-31 +England/LEED-2AA4EC/2020|20-04-06 +England/LEED-2AA394/2020|20-03-31 +England/BRIS-1854318/2020|20-04-28 +England/BRIS-12E6FA/2020|20-04-20 +Wales/PHWC-16881C/2020|20-04-21 +Wales/PHWC-3612C/2020|20-04-28 +England/SHEF-C184F/2020|20-08-31 +England/ALDP-9D8FFC/2020|20-09-18 +England/NORT-28B1EA/2020|20-04-18 +England/NORT-28B28D/2020|20-04-18 +England/ALDP-5D52BE/2020|20-06-18 +England/ALDP-6FAF24/2020|20-06-29 +England/MILK-B01F25/2020|20-10-23 +Switzerland/210050/2020|LR882268.1|20-07-19 +England/ALDP-691499/2020|20-07-02 +England/ALDP-4A2BFC/2020|20-05-22 +England/ALDP-9B5BC4/2020|20-08-28 +England/ALDP-49F5B8/2020|20-05-22 +USA/WA-S2573/2020|MT831840.1|20-06-17 +USA/WA-S2761/2020|MT947580.1|20-07-29 +England/QEUH-A9F5D0/2020|20-10-20 +England/QEUH-96AEF2/2020|20-08-15 +Netherlands/NA_436/2020|LR883367.1|20-04-07 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 +AUS/VIC3114/2020|MT972550.1|20-07-06 +AUS/VIC9664/2020|MW156172.1|20-08-12 +England/MILK-9C4087/2020|20-09-09 +England/QEUH-96F349/2020|20-08-17 +England/BIRM-5FC3B/2020|20-05-28 +England/PHEC-13ADF/2020|20-03-13 +England/ALDP-951E49/2020|20-06-10 +England/ALDP-9557A4/2020|20-06-12 +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 +Switzerland/220001/2020|LR882220.1|20-07-24 +England/BIRM-6BECD/2020|20-11-17 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 +England/ALDP-94A63C/2020|20-06-11 +England/ALDP-52A636/2020|20-06-01 +ZW-6983|LR963462.1|20-05-01 +ZW-6978|LR963455.1|20-05-01 +England/ALDP-952A44/2020|20-06-21 +England/QEUH-9B4A22/2020|20-09-07 +Scotland/CVR3062/2020|20-04-24 +Scotland/CVR2435/2020|20-04-14 +England/OXON-B0922/2020|20-03-28 +AUS/VIC995/2020|MT451680.1|20-03-31 +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 +USA/COVID20-0537/2020|MT981422.1|20-06-04 +USA/COVID20-1129/2020|MW067826.1|20-07-10 +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 +England/ALDP-952A53/2020|20-06-13 +England/ALDP-95A745/2020|20-06-13 +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 +USA/UT-05592/2020|MW054143.1|20-06-01 +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 +USA/UT-02970/2020|MW053933.1|20-05-01 +USA/UT-08378/2020|MW206039.1|20-05-26 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 +England/MILK-9934B2/2020|20-08-26 +Switzerland/240029/2020|LR880608.1|20-08-10 +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 +England/MILK-958598/2020|20-06-09 +England/ALDP-4F4092/2020|20-06-24 +England/LIVE-A91F7/2020|20-03-25 +England/CAMB-1AE865/2020|20-04-30 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 +England/ALDP-955F15/2020|20-06-08 +England/MILK-9A6856/2020|20-08-31 +England/ALDP-94EB75/2020|20-06-17 +England/ALDP-6E2806/2020|20-07-01 +USA/WA-S4490/2021|MW648014.1|21-01-21 +USA/WA-S3458/2020|MW494078.1|20-12-07 +England/MILK-5642D2/2020|20-06-10 +England/CAMB-1B3593/2020|20-05-26 +Switzerland/310517/2020|LR898824.1|20-10-08 +England/MILK-9AB1A1/2020|20-08-31 +Scotland/QEUH-A9E7BD/2020|20-10-20 +Scotland/EDB7778/2020|20-09-16 +SAU/578/2020|MT755891.1|20-02-17 +Scotland/EDB6640/2020|20-05-28 +Scotland/CVR3970/2020|20-08-22 +England/MILK-A7D5AB/2020|20-10-13 +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 +Scotland/EDB6391/2020|20-05-13 +Scotland/EDB5108/2020|20-03-31 +USA/VA-DCLS-0489/2020|MT951943.1|20-05 +USA/VA-DCLS-1388/2020|MW067734.1|20-07 +Scotland/QEUH-961BB8/2020|20-08-02 +Switzerland/250091/2020|LR881897.1|20-08-19 +England/MILK-9750EF/2020|20-08-21 +England/MILK-9C3D45/2020|20-09-09 +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 +England/PHEC-14F392/2020|20-12-24 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 +England/CAMB-737D6/2020|20-03-31 +England/CAMB-1B08D9/2020|20-05-04 +IND/GBRC238b/2020|MT676367.1|20-06-12 +IND/GBRC209a/2020|MT664202.1|20-06-11 +Wales/PHWC-360A7/2020|20-04-29 +Wales/PHWC-260AA/2020|20-03-24 +USA/WA-S2012/2020|MT831128.1|20-06-04 +USA/WA-S1775/2020|MT834200.1|20-06-01 +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 +England/ALDP-651C9D/2020|20-07-04 +Scotland/CVR3919/2020|20-06-21 +England/QEUH-96E27A/2020|20-08-20 +England/MILK-74C001/2020|20-06-29 +England/ALDP-955FAC/2020|20-06-08 +England/ALDP-49E391/2020|20-05-20 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 +England/QEUH-9DE381/2020|20-09-21 +England/QEUH-95E7D8/2020|20-08-06 +England/NOTT-111E3E/2020|20-06-10 +England/NOTT-111117/2020|20-05-03 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +Scotland/CVR41/2020|20-03-13 +England/ALDP-9ECEAD/2020|20-05-05 +England/BRIS-12DC53/2020|20-05-02 +England/ALDP-A525BB/2020|20-10-07 +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 +England/MILK-A45AF8/2020|20-10-06 +Scotland/QEUH-A613BF/2020|20-10-13 +Switzerland/180039/2020|LR861669.1|20-07-01 +Switzerland/220022/2020|LR882244.1|20-07-27 +England/NORW-E8709/2020|20-04-18 +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 +England/MILK-A18C8F/2020|20-10-03 +England/ALDP-C3C1FD/2020|20-12-10 +Wales/PHWC-15E0B7/2020|20-05-13 +Wales/PHWC-30957/2020|20-04-08 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 +England/MILK-ABBCCA/2020|20-10-21 +England/MILK-ACCF27/2020|20-10-21 +England/ALDP-907D09/2020|20-06-22 +England/MILK-85E3E4/2020|20-07-18 +Wales/PHWC-16578B/2020|20-06-07 +Wales/PHWC-166104/2020|20-05-15 +England/ALDP-94D8F7/2020|20-06-20 +England/NOTT-111BFB/2020|20-05-29 +England/PORT-2F5752/2020|20-10-13 +England/QEUH-96A4C3/2020|20-08-13 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 +England/ALDP-9D9104/2020|20-09-18 +England/CAMC-A40F67/2020|20-10-06 +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 +DV_IZSPB_236_S50|LR992121.1|20-08-29 +England/MILK-62FD59/2020|20-07-05 +England/ALDP-90DDC7/2020|20-06-26 +USA/IL-UW-1082/2020|MT929034.1|20-07-27 +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 +USA/WA-S2598/2020|MT831859.1|20-06-18 +USA/WA-S1840/2020|MT834024.1|20-05-27 +USA/WA-S1246/2020|MT821587.1|20-05-11 +USA/WA-S820/2020|MT641503.1|20-04-15 +England/CAMB-80B43/2020|20-04-11 +England/CAMB-7666D/2020|20-03-29 +AUS/VIC13094/2020|MW185501.1|20-07-31 +AUS/VIC9179/2020|MW153248.1|20-08-21 +AUS/VIC11646/2020|MW155572.1|20-07-22 +England/CAMC-947259/2020|20-07-21 +England/MILK-9927C9/2020|20-08-27 +England/CAMB-1AA438/2020|20-04-17 +England/CAMB-1AFB7A/2020|20-05-02 +England/NORT-282796/2020|20-03-28 +England/NORT-2839AE/2020|20-04-01 +England/QEUH-96E025/2020|20-08-18 +Scotland/QEUH-94375E/2020|20-08-02 +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 +England/MILK-1169960/2021|21-01-25 +USA/WA-S4100/2021|MW555971.1|21-01-18 +USA/WA-S4074/2021|MW555949.1|21-01-19 +England/ALDP-CB55B4/2020|20-12-20 +England/CAMC-CF4B5D/2020|20-12-21 +Wales/PHWC-340A9/2020|20-04-20 +Wales/PHWC-1667A8/2020|20-05-26 +England/PHEC-14F5D8/2020|20-12-29 +Scotland/EDB11343/2020|20-12-26 +England/LIVE-DAB556/2020|20-10-18 +England/PHEC-14DE93/2020|20-11-11 +USA/COVID20-0777/2020|MW002812.1|20-06-26 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 +USA/VA-DCLS-1512/2020|MW197472.1|20-07 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 +USA/1453xE2/2020|MW521402.1|20-07-05 +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 +USA/WA-S2867/2020|MW173410.1|20-09-20 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 +England/CAMC-947D3A/2020|20-07-17 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 +USA/WI-UW-994/2020|MT846680.1|20-07-20 +England/BRIS-12C762/2020|20-05-13 +England/BRIS-127AD7/2020|20-04-16 +England/BRIS-12D9F2/2020|20-05-06 +England/BRIS-12B156/2020|20-05-08 +England/ALDP-B75065/2020|20-11-12 +Scotland/QEUH-AD4AFE/2020|20-10-27 +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 +England/MILK-EB78C6/2021|21-01-02 +England/CAMC-C44338/2020|20-12-10 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 +Switzerland/300264/2020|LR898541.1|20-10-01 +England/QEUH-963433/2020|20-08-10 +England/MILK-ACC08E/2020|20-10-21 +Scotland/QEUH-9696CE/2020|20-08-14 +England/MILK-BB0022/2020|20-11-18 +England/ALDP-A6CC8C/2020|20-10-14 +Northern_Ireland/NIRE-FB967/2020|20-08-17 +England/QEUH-7A4BBB/2020|20-07-14 +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 +England/ALDP-9558ED/2020|20-06-12 +England/NORT-286255/2020|20-09-16 +Switzerland/250060/2020|LR881882.1|20-08-18 +England/QEUH-A77F0D/2020|20-10-12 +England/LOND-126DFA5/2020|20-12-27 +Wales/PHWC-4846A4/2020|20-10-24 +England/QEUH-AD487C/2020|20-10-26 +England/QEUH-9B7B2C/2020|20-09-03 +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 +Japan/TKYE624705_2020/2020|LC593810.1|20-07 +England/QEUH-9F9265/2020|20-09-26 +England/QEUH-98EE43/2020|20-08-25 +IND/GBRC455b/2020|MW600453.1|20-12-24 +IND/GBRC455a/2020|MW600436.1|20-12-24 +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 +England/MILK-95862C/2020|20-06-11 +England/ALDP-94EF88/2020|20-06-16 +Scotland/QEUH-A00DF0/2020|20-10-02 +England/ALDP-9CC5BD/2020|20-09-15 +England/ALDP-9BEB16/2020|20-09-09 +England/ALDP-A95376/2020|20-10-19 +England/QEUH-B10460/2020|20-11-02 +Scotland/QEUH-96D5CD/2020|20-08-20 +England/CAMB-1AE7FF/2020|20-04-29 +England/CAMB-762D2/2020|20-03-28 +USA/WA-S1222/2020|MT821613.1|20-05-08 +USA/WA-S1655/2020|MT834136.1|20-05-29 +England/MILK-BB0F16/2020|20-11-17 +England/CAMC-BBDD4C/2020|20-11-22 +Scotland/EDB11342/2020|20-12-26 +England/QEUH-CAF17D/2020|20-12-15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 +Scotland/QEUH-969725/2020|20-08-14 +England/QEUH-AD1648/2020|20-10-26 +England/MILK-A192C8/2020|20-10-01 +England/QEUH-9F3FDD/2020|20-09-24 +England/CAMC-1263B05/2021|21-02-10 +England/QEUH-AD3822/2020|20-10-26 +England/MILK-9A94E6/2020|20-09-01 +England/MILK-566C5A/2020|20-06-12 +England/CAMC-C2CDFC/2020|20-12-07 +England/MILK-CAA0EE/2020|20-12-18 +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 +England/QEUH-96A29C/2020|20-08-13 +England/ALDP-9EA6D4/2020|20-09-24 +England/MILK-A6AEC4/2020|20-10-09 +England/MILK-B889A0/2020|20-11-14 +England/MILK-ACEE55/2020|20-10-21 +Switzerland/260079/2020|LR882418.1|20-08-25 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 +USA/WA-S2808/2020|MW077495.1|20-08-31 +England/CAMC-B3582D/2020|20-11-05 +England/MILK-A796E8/2020|20-10-14 +England/MILK-BB0031/2020|20-11-18 +Scotland/QEUH-96B4E0/2020|20-08-17 +England/PHEC-152C73/2020|20-11-16 +England/MILK-9AA782/2020|20-08-31 +England/ALDP-B82A0D/2020|20-11-14 +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 +England/MILK-A79D10/2020|20-10-15 +England/PHEC-148F95/2020|20-10-15 +England/MILK-A180DE/2020|20-10-01 +England/NORW-222D0F/2020|20-12-20 +England/MILK-F72F49/2021|21-01-05 +England/ALDP-94DD07/2020|20-06-19 +England/ALDP-49EC3C/2020|20-05-20 +PER/covper024/2020|MW030255.1|20-07-04 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 +PER/covper011/2020|MW030242.1|20-07-04 +PER/covper040/2020|MW030271.1|20-05-05 +England/MILK-B1553B/2020|20-10-23 +England/MILK-66F889/2020|20-07-03 +England/QEUH-96BAA2/2020|20-08-14 +Wales/ALDP-B19FFD/2020|20-11-01 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +PER/covper018/2020|MW030249.1|20-07-03 +England/CAMC-C3E586/2020|20-12-10 +England/CAMC-DE5550/2020|20-12-29 +Japan/TKYE630414_2020/2020|LC593818.1|20-08
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_15_subtree.json Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,16487 @@ +{ +"version":"v2", +"meta":{ +"title":"mutation_annotated_tree", +"filters": ["country"], +"panels": ["tree"], +"colorings": [ {"key":"MAT_Clade_0","title":"MAT_Clade","type":"categorical"}, +{"key":"MAT_Clade_1","title":"MAT_Clade","type":"categorical"} ], +"display_defaults":{"branch_label":"nuc mutations"},"description":"JSON generated by matUtils. If you have metadata you wish to display, you can now drag on a CSV/TSV file and it will be added into this view, [see here](https://docs.nextstrain.org/projects/auspice/en/latest/advanced-functionality/drag-drop-csv-tsv.html) for more info."}, +"tree":{ "name":"wrapper", +"children":[ { +"name": "25", +"branch_attrs": { + "labels": { "nuc mutations": "C241T" }, +"mutations": { "nuc" : [ "C241T" ] } + }, +"node_attrs": { + "div":1, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "26", +"branch_attrs": { + "labels": { "nuc mutations": "C14408T" }, +"mutations": { "nuc" : [ "C14408T" ] } + }, +"node_attrs": { + "div":2, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1"}}, +"children":[ { +"name": "France/40002VJ/2020|MT470179.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "C2416T,G12079C,C23220A" }, +"mutations": { "nuc" : [ "C2416T","G12079C","C23220A" ] } + }, +"node_attrs": { "div": 5, "date": {"value": "20-03"}, "country": {"value": "France"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "27", +"branch_attrs": { + "labels": { "nuc mutations": "A23403G" }, +"mutations": { "nuc" : [ "A23403G" ] } + }, +"node_attrs": { + "div":3, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Wales/PHWC-310CA/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "A2480G,A12529G,T14408C,G26144T" }, +"mutations": { "nuc" : [ "A2480G","A12529G","T14408C","G26144T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-11"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "28", +"branch_attrs": { + "labels": { "nuc mutations": "C3037T" }, +"mutations": { "nuc" : [ "C3037T" ] } + }, +"node_attrs": { + "div":4, "MAT_Clade_0": {"value": "20A"}, "MAT_Clade_1": {"value": "B.1.108"}}, +"children":[ { +"name": "29", +"branch_attrs": { + "labels": { "nuc mutations": "G7042T,G8861T" }, +"mutations": { "nuc" : [ "G7042T","G8861T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/BRIS-123965/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C5806T,C10450T" }, +"mutations": { "nuc" : [ "C5806T","C10450T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-125347/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "30", +"branch_attrs": { + "labels": { "nuc mutations": "C4809T" }, +"mutations": { "nuc" : [ "C4809T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "IND/Isolate_9088/2020|MW555597.1|20-06-30", +"branch_attrs": { + "labels": { "nuc mutations": "G14245A,G28325A" }, +"mutations": { "nuc" : [ "G14245A","G28325A" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-06-30"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/763/2020|MT577009.1|20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 5, "date": {"value": "20"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "31", +"branch_attrs": { + "labels": { "nuc mutations": "G25429T" }, +"mutations": { "nuc" : [ "G25429T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "32", +"branch_attrs": { + "labels": { "nuc mutations": "C16289T" }, +"mutations": { "nuc" : [ "C16289T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.391"}}, +"children":[ { +"name": "England/CAMB-76515/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "T25429G" }, +"mutations": { "nuc" : [ "T25429G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AE294/2020|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "T4587A,G12833A,C15824T" }, +"mutations": { "nuc" : [ "T4587A","G12833A","C15824T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "33", +"branch_attrs": { + "labels": { "nuc mutations": "C13730T" }, +"mutations": { "nuc" : [ "C13730T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.104"}}, +"children":[ { +"name": "England/LEED-2A8D10/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C25916T" }, +"mutations": { "nuc" : [ "C25916T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AC6F4/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C6558T,G9130T,G26529T" }, +"mutations": { "nuc" : [ "C6558T","G9130T","G26529T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "34", +"branch_attrs": { + "labels": { "nuc mutations": "C25916T" }, +"mutations": { "nuc" : [ "C25916T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.88"}}, +"children":[ { +"name": "35", +"branch_attrs": { + "labels": { "nuc mutations": "A10874G,T26677C" }, +"mutations": { "nuc" : [ "A10874G","T26677C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.254"}}, +"children":[ { +"name": "36", +"branch_attrs": { + "labels": { "nuc mutations": "G25440A,G29745T" }, +"mutations": { "nuc" : [ "G25440A","G29745T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/EDB2049/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "T25916C" }, +"mutations": { "nuc" : [ "T25916C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-18"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB2100/2020|20-04-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-19"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/CAMB-1AC7D3/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "A13863G" }, +"mutations": { "nuc" : [ "A13863G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/CAMB-7EBDF/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "A13433G,C18377T" }, +"mutations": { "nuc" : [ "A13433G","C18377T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "37", +"branch_attrs": { + "labels": { "nuc mutations": "C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T" }, +"mutations": { "nuc" : [ "C1288T","G5230T","G10705T","C10747T","G25996A","C28854T","C29284T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.88.1"}}, +"children":[ { +"name": "England/MILK-BB0F16/2020|20-11-17", +"branch_attrs": { + "labels": { "nuc mutations": "G7675T,C12406T" }, +"mutations": { "nuc" : [ "G7675T","C12406T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-11-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-BBDD4C/2020|20-11-22", +"branch_attrs": { + "labels": { "nuc mutations": "C2939T,C5934T,C21635T,T27988C,C28775T" }, +"mutations": { "nuc" : [ "C2939T","C5934T","C21635T","T27988C","C28775T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "38", +"branch_attrs": { + "labels": { "nuc mutations": "G17278T,C19610T,T26906C,G29688T,G29757T" }, +"mutations": { "nuc" : [ "G17278T","C19610T","T26906C","G29688T","G29757T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.79"}}, +"children":[ { +"name": "Scotland/CVR2381/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1848T" }, +"mutations": { "nuc" : [ "C1848T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR2197/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "G21776T" }, +"mutations": { "nuc" : [ "G21776T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-11"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "39", +"branch_attrs": { + "labels": { "nuc mutations": "A28841G" }, +"mutations": { "nuc" : [ "A28841G" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.248"}}, +"children":[ { +"name": "Scotland/CVR3417/2020|20-05-07", +"branch_attrs": { + "labels": { "nuc mutations": "G3689A,T11660A,C29743T" }, +"mutations": { "nuc" : [ "G3689A","T11660A","C29743T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-07"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR1519/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A6441G" }, +"mutations": { "nuc" : [ "A6441G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-03"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "40", +"branch_attrs": { + "labels": { "nuc mutations": "G1141T" }, +"mutations": { "nuc" : [ "G1141T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.251"}}, +"children":[ { +"name": "England/MILK-93B73B/2020|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "C3817T,C25160T,C28099T" }, +"mutations": { "nuc" : [ "C3817T","C25160T","C28099T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9589F6/2020|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "C7488T,C14396T" }, +"mutations": { "nuc" : [ "C7488T","C14396T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "41", +"branch_attrs": { + "labels": { "nuc mutations": "C28045T" }, +"mutations": { "nuc" : [ "C28045T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.250"}}, +"children":[ { +"name": "England/BRIS-128441/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "G10324T,C22713T" }, +"mutations": { "nuc" : [ "G10324T","C22713T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7C39D/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "G2885T,G26458C,C29253T" }, +"mutations": { "nuc" : [ "G2885T","G26458C","C29253T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "42", +"branch_attrs": { + "labels": { "nuc mutations": "C3602T,A24232G" }, +"mutations": { "nuc" : [ "C3602T","A24232G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.392"}}, +"children":[ { +"name": "England/NORW-E8C37/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C11460T" }, +"mutations": { "nuc" : [ "C11460T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-E75A6/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "T3602C,C6538T,T21206G" }, +"mutations": { "nuc" : [ "T3602C","C6538T","T21206G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "43", +"branch_attrs": { + "labels": { "nuc mutations": "G1589A,G29474T" }, +"mutations": { "nuc" : [ "G1589A","G29474T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.252"}}, +"children":[ { +"name": "Wales/PHWC-3122E/2020|20-04-10", +"branch_attrs": { + "labels": { "nuc mutations": "A22457G" }, +"mutations": { "nuc" : [ "A22457G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-10"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-1645EC/2020|20-05-10", +"branch_attrs": { + "labels": { "nuc mutations": "A11438G" }, +"mutations": { "nuc" : [ "A11438G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-10"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "44", +"branch_attrs": { + "labels": { "nuc mutations": "G21538T" }, +"mutations": { "nuc" : [ "G21538T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.249"}}, +"children":[ { +"name": "England/ALDP-50085E/2020|20-06-27", +"branch_attrs": { + "labels": { "nuc mutations": "T11164G,G15406T,G22332A,G27583T,G29427T" }, +"mutations": { "nuc" : [ "T11164G","G15406T","G22332A","G27583T","G29427T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-127E8/2020|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "45", +"branch_attrs": { + "labels": { "nuc mutations": "G28514T" }, +"mutations": { "nuc" : [ "G28514T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.105"}}, +"children":[ { +"name": "England/CAMB-75BD8/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C18060T" }, +"mutations": { "nuc" : [ "C18060T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "T4579A,C5175T,T18552C,C25521T,G27877T" }, +"mutations": { "nuc" : [ "T4579A","C5175T","T18552C","C25521T","G27877T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-01"}, "country": {"value": "UnitedKingdom"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "46", +"branch_attrs": { + "labels": { "nuc mutations": "G1914A,T16456C" }, +"mutations": { "nuc" : [ "G1914A","T16456C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.152"}}, +"children":[ { +"name": "England/ALDP-9ED9F6/2020|20-05-05", +"branch_attrs": { + "labels": { "nuc mutations": "C10681T,G16855T,C26060T,C29614T" }, +"mutations": { "nuc" : [ "C10681T","G16855T","C26060T","C29614T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-944BD9/2020|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "G4399T,G27746T" }, +"mutations": { "nuc" : [ "G4399T","G27746T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "47", +"branch_attrs": { + "labels": { "nuc mutations": "C25665T,G28325T" }, +"mutations": { "nuc" : [ "C25665T","G28325T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.103"}}, +"children":[ { +"name": "USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C15540T" }, +"mutations": { "nuc" : [ "C15540T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "G16075T" }, +"mutations": { "nuc" : [ "G16075T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "48", +"branch_attrs": { + "labels": { "nuc mutations": "C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T" }, +"mutations": { "nuc" : [ "C3487T","C11308T","T15264C","C16332T","C19170T","C25791T","C28854T","C29614T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.188"}}, +"children":[ { +"name": "USA/WA-S3017/2020|MW474188.1|20-08-15", +"branch_attrs": { + "labels": { "nuc mutations": "G4508A,T7884C,C21811T" }, +"mutations": { "nuc" : [ "G4508A","T7884C","C21811T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2852/2020|MW079820.1|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C17795T,G26230T" }, +"mutations": { "nuc" : [ "C17795T","G26230T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "49", +"branch_attrs": { + "labels": { "nuc mutations": "G3871T" }, +"mutations": { "nuc" : [ "G3871T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.378"}}, +"children":[ { +"name": "USA/WI-UW-26/2020|MT706147.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "A29797G" }, +"mutations": { "nuc" : [ "A29797G" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/IL-QDX-2568/2020|MW191367.1|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "C19862T" }, +"mutations": { "nuc" : [ "C19862T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "50", +"branch_attrs": { + "labels": { "nuc mutations": "C2939T" }, +"mutations": { "nuc" : [ "C2939T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.199"}}, +"children":[ { +"name": "USA/ID-QDX-1727/2020|MW190466.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "C6401T,C18877T,G28882T" }, +"mutations": { "nuc" : [ "C6401T","C18877T","G28882T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "T11698C,C18322T" }, +"mutations": { "nuc" : [ "T11698C","C18322T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "51", +"branch_attrs": { + "labels": { "nuc mutations": "A696C" }, +"mutations": { "nuc" : [ "A696C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.139"}}, +"children":[ { +"name": "USA/IN-QDX-184/2020|MT786818.1|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "G3871T,T27299C" }, +"mutations": { "nuc" : [ "G3871T","T27299C" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-558/2020|MT750137.1|20-06-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 5, "date": {"value": "20-06-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "52", +"branch_attrs": { + "labels": { "nuc mutations": "G24077T" }, +"mutations": { "nuc" : [ "G24077T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.91"}}, +"children":[ { +"name": "AUS/VIC2260/2020|MT972173.1|20-06-22", +"branch_attrs": { + "labels": { "nuc mutations": "G14294A,A23746G,T24077A,A29622C" }, +"mutations": { "nuc" : [ "G14294A","A23746G","T24077A","A29622C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-22"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/EXET-1358BE/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "A20092G,T28630G" }, +"mutations": { "nuc" : [ "A20092G","T28630G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "53", +"branch_attrs": { + "labels": { "nuc mutations": "G25563T" }, +"mutations": { "nuc" : [ "G25563T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.350"}}, +"children":[ { +"name": "54", +"branch_attrs": { + "labels": { "nuc mutations": "C8389T" }, +"mutations": { "nuc" : [ "C8389T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110"}}, +"children":[ { +"name": "55", +"branch_attrs": { + "labels": { "nuc mutations": "G27915A" }, +"mutations": { "nuc" : [ "G27915A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/FL-BPHL-0553/2020|MT834693.1|20-06-30", +"branch_attrs": { + "labels": { "nuc mutations": "C815T,C3411T,T10795C,A17521G,C18452T" }, +"mutations": { "nuc" : [ "C815T","C3411T","T10795C","A17521G","C18452T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "56", +"branch_attrs": { + "labels": { "nuc mutations": "C601T" }, +"mutations": { "nuc" : [ "C601T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/FL-BPHL-0540/2020|MT834625.1|20-03-21", +"branch_attrs": { + "labels": { "nuc mutations": "A17521G,A22206G" }, +"mutations": { "nuc" : [ "A17521G","A22206G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "57", +"branch_attrs": { + "labels": { "nuc mutations": "G12832T" }, +"mutations": { "nuc" : [ "G12832T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110.3"}}, +"children":[ { +"name": "USA/COVID20-0537/2020|MT981422.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C29503T" }, +"mutations": { "nuc" : [ "C29503T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/COVID20-1129/2020|MW067826.1|20-07-10", +"branch_attrs": { + "labels": { "nuc mutations": "A28165G" }, +"mutations": { "nuc" : [ "A28165G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "58", +"branch_attrs": { + "labels": { "nuc mutations": "G1319A" }, +"mutations": { "nuc" : [ "G1319A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C23551T,G27084T" }, +"mutations": { "nuc" : [ "C23551T","G27084T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-02"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "59", +"branch_attrs": { + "labels": { "nuc mutations": "G2945A,C10156T" }, +"mutations": { "nuc" : [ "G2945A","C10156T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110.1"}}, +"children":[ { +"name": "CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "T17208C" }, +"mutations": { "nuc" : [ "T17208C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-18"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-269/2020|MT429191.1|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "A23588T,C27657T" }, +"mutations": { "nuc" : [ "A23588T","C27657T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "60", +"branch_attrs": { + "labels": { "nuc mutations": "C23453T" }, +"mutations": { "nuc" : [ "C23453T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.110.2"}}, +"children":[ { +"name": "England/LEED-2A91D7/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "T1778C,C6762T,C28849T" }, +"mutations": { "nuc" : [ "T1778C","C6762T","C28849T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LEED-2A87C7/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "G3230A" }, +"mutations": { "nuc" : [ "G3230A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "C1997T" }, +"mutations": { "nuc" : [ "C1997T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-06-02"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "61", +"branch_attrs": { + "labels": { "nuc mutations": "C1059T" }, +"mutations": { "nuc" : [ "C1059T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": "20C"}, "MAT_Clade_1": {"value": "B.1.371"}}, +"children":[ { +"name": "62", +"branch_attrs": { + "labels": { "nuc mutations": "C24381T" }, +"mutations": { "nuc" : [ "C24381T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/CA-CZB-1434/2020|MT628140.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "C23718T" }, +"mutations": { "nuc" : [ "C23718T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "63", +"branch_attrs": { + "labels": { "nuc mutations": "C24442T" }, +"mutations": { "nuc" : [ "C24442T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/VA-DCLS-0676/2020|MT911804.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-QDX-476/2020|MW064508.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "64", +"branch_attrs": { + "labels": { "nuc mutations": "A13512T,G13513T,G13514A" }, +"mutations": { "nuc" : [ "A13512T","G13513T","G13514A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.446"}}, +"children":[ { +"name": "USA/WA-UW-4105/2020|MT358746.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "T1333A,T1334A" }, +"mutations": { "nuc" : [ "T1333A","T1334A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-2220/2020|MT345839.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "T1059C,C15763T,T25563G" }, +"mutations": { "nuc" : [ "T1059C","C15763T","T25563G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "65", +"branch_attrs": { + "labels": { "nuc mutations": "G1298A" }, +"mutations": { "nuc" : [ "G1298A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.437"}}, +"children":[ { +"name": "USA/FL-BPHL-1565/2020|MW056116.1|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T" }, +"mutations": { "nuc" : [ "G12694A","C17639T","A18529G","A20742T","C21637T","C27752T","G29628T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-0510/2020|MT834668.1|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "C344T,C5090T,C10228T,A22001G" }, +"mutations": { "nuc" : [ "C344T","C5090T","C10228T","A22001G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "66", +"branch_attrs": { + "labels": { "nuc mutations": "T20037C" }, +"mutations": { "nuc" : [ "T20037C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.485"}}, +"children":[ { +"name": "USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "G2900T,C23179T" }, +"mutations": { "nuc" : [ "G2900T","C23179T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "G28073T" }, +"mutations": { "nuc" : [ "G28073T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "67", +"branch_attrs": { + "labels": { "nuc mutations": "T1059C,C1594T,C11109T" }, +"mutations": { "nuc" : [ "T1059C","C1594T","C11109T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.22"}}, +"children":[ { +"name": "England/CAMB-7A7DF/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G8578A" }, +"mutations": { "nuc" : [ "G8578A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_18/2020|LR878352.1|20-03-09", +"branch_attrs": { + "labels": { "nuc mutations": "C23506T" }, +"mutations": { "nuc" : [ "C23506T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-09"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "68", +"branch_attrs": { + "labels": { "nuc mutations": "C18555T,C28892T" }, +"mutations": { "nuc" : [ "C18555T","C28892T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.349"}}, +"children":[ { +"name": "USA/VA-DCLS-1557/2020|MW208010.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "C25207T" }, +"mutations": { "nuc" : [ "C25207T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1018/2020|MT966219.1|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "A6035G" }, +"mutations": { "nuc" : [ "A6035G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "69", +"branch_attrs": { + "labels": { "nuc mutations": "C2668T" }, +"mutations": { "nuc" : [ "C2668T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.453"}}, +"children":[ { +"name": "USA/CA-CZB-11119/2020|MW276517.1|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,G2867T,C12651T" }, +"mutations": { "nuc" : [ "C1912T","G2867T","C12651T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11132/2020|MW276510.1|20-05-23", +"branch_attrs": { + "labels": { "nuc mutations": "T18240C,T28009C" }, +"mutations": { "nuc" : [ "T18240C","T28009C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "70", +"branch_attrs": { + "labels": { "nuc mutations": "G24368T" }, +"mutations": { "nuc" : [ "G24368T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "71", +"branch_attrs": { + "labels": { "nuc mutations": "C10376T,G18583T,G29773T" }, +"mutations": { "nuc" : [ "C10376T","G18583T","G29773T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.44"}}, +"children":[ { +"name": "Wales/PHWC-340A9/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "G7675T,G18318T,T21745C,C27610T" }, +"mutations": { "nuc" : [ "G7675T","G18318T","T21745C","C27610T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-20"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-1667A8/2020|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C" }, +"mutations": { "nuc" : [ "C2065T","G4207T","T9485C","T10376C","A21515G","G23868T","G27390C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-26"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "72", +"branch_attrs": { + "labels": { "nuc mutations": "A3103C,C5893T,A28117T" }, +"mutations": { "nuc" : [ "A3103C","C5893T","A28117T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.491"}}, +"children":[ { +"name": "England/CAMB-83FBD/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AD004/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "A28356G" }, +"mutations": { "nuc" : [ "A28356G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "73", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G" }, +"mutations": { "nuc" : [ "A10323G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "74", +"branch_attrs": { + "labels": { "nuc mutations": "T15276A,G28842T" }, +"mutations": { "nuc" : [ "T15276A","G28842T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.361"}}, +"children":[ { +"name": "USA/FL-BPHL-1022/2020|MT966234.1|20-07-20", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T,A15276T,G20679T,T21291C" }, +"mutations": { "nuc" : [ "G11417T","A15276T","G20679T","T21291C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T" }, +"mutations": { "nuc" : [ "G1882T","C5178T","T9694C","C13923T","G15543T","A19080G","A27778G","G28321T","G29511T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-12-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "75", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T" }, +"mutations": { "nuc" : [ "G174T","G5230T","A21801C","G22813T","G23012A","A23063T","C23664T","C25904T","C26456T","C28887T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": "20H/501Y.V2"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/PHEC-14F5D8/2020|20-12-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A" }, +"mutations": { "nuc" : [ "C6525T","G13122A","A15657G","C21801A","G22205C","T23905A","T25171C","G27516A","G27933A" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-12-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "76", +"branch_attrs": { + "labels": { "nuc mutations": "A22206G" }, +"mutations": { "nuc" : [ "A22206G" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.351"}}, +"children":[ { +"name": "77", +"branch_attrs": { + "labels": { "nuc mutations": "A2692T,C21614T,C26645T" }, +"mutations": { "nuc" : [ "A2692T","C21614T","C26645T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/EDB11343/2020|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "G9049T,C20405T,A25806G" }, +"mutations": { "nuc" : [ "G9049T","C20405T","A25806G" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-26"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB11342/2020|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "A4459G,A18846G" }, +"mutations": { "nuc" : [ "A4459G","A18846G" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-26"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/QEUH-CAF17D/2020|20-12-15", +"branch_attrs": { + "labels": { "nuc mutations": "C9142T,C19524T" }, +"mutations": { "nuc" : [ "C9142T","C19524T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "78", +"branch_attrs": { + "labels": { "nuc mutations": "C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T" }, +"mutations": { "nuc" : [ "C683T","T10249C","G17427T","C25546T","G25970T","G25971A","C28854T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.362"}}, +"children":[ { +"name": "England/LIVE-DAB556/2020|20-10-18", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C" }, +"mutations": { "nuc" : [ "G174T","T683C","C10249T","T17427G","T25970G","A25971G","T28854C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-14DE93/2020|20-11-11", +"branch_attrs": { + "labels": { "nuc mutations": "G204T,C6286T,C21614T,C22227T,T26424C" }, +"mutations": { "nuc" : [ "G204T","C6286T","C21614T","C22227T","T26424C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "79", +"branch_attrs": { + "labels": { "nuc mutations": "G24368T,C24621T" }, +"mutations": { "nuc" : [ "G24368T","C24621T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.489"}}, +"children":[ { +"name": "Wales/PHWC-1658A6/2020|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "G2830A,A2903G,C7869T" }, +"mutations": { "nuc" : [ "G2830A","A2903G","C7869T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-19"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2E0A2/2020|20-04-10", +"branch_attrs": { + "labels": { "nuc mutations": "C18568T" }, +"mutations": { "nuc" : [ "C18568T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-10"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "80", +"branch_attrs": { + "labels": { "nuc mutations": "C18744T,A18978G,A29391G" }, +"mutations": { "nuc" : [ "C18744T","A18978G","A29391G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.302"}}, +"children":[ { +"name": "England/ALDP-952A53/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1190T,G25273T,C29249T" }, +"mutations": { "nuc" : [ "C1190T","G25273T","C29249T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-95A745/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G11708A,C14724T,C17550T" }, +"mutations": { "nuc" : [ "G11708A","C14724T","C17550T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "81", +"branch_attrs": { + "labels": { "nuc mutations": "C4999T,C13730T" }, +"mutations": { "nuc" : [ "C4999T","C13730T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.431"}}, +"children":[ { +"name": "Scotland/EDB3137/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "G25494T,C29719T" }, +"mutations": { "nuc" : [ "G25494T","C29719T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-06"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB2810/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C19113T,T21752C" }, +"mutations": { "nuc" : [ "C19113T","T21752C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-30"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "82", +"branch_attrs": { + "labels": { "nuc mutations": "A2018G,C18029T" }, +"mutations": { "nuc" : [ "A2018G","C18029T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.314"}}, +"children":[ { +"name": "USA/CA-QDX-434/2020|MW064457.1|20-03-20", +"branch_attrs": { + "labels": { "nuc mutations": "C8697T,T18029C" }, +"mutations": { "nuc" : [ "C8697T","T18029C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-02231/2020|MT444626.1|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C2445T,G20890A,G25947T,G28373T,G28374T" }, +"mutations": { "nuc" : [ "C2445T","G20890A","G25947T","G28373T","G28374T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "83", +"branch_attrs": { + "labels": { "nuc mutations": "C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T" }, +"mutations": { "nuc" : [ "C2939T","C3736T","G7037A","C7732T","C25517T","C26110T","C28310T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.333"}}, +"children":[ { +"name": "USA/WA-S2850/2020|MW079819.1|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "A4935G,T26510C,G29736T,C29762G" }, +"mutations": { "nuc" : [ "A4935G","T26510C","G29736T","C29762G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2746/2020|MT947577.1|20-07-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "84", +"branch_attrs": { + "labels": { "nuc mutations": "G19542T,C23551T,C28821A" }, +"mutations": { "nuc" : [ "G19542T","C23551T","C28821A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.448"}}, +"children":[ { +"name": "USA/WI-UW-879/2020|MT846567.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "G3403T,G13201T,C26527T" }, +"mutations": { "nuc" : [ "G3403T","G13201T","C26527T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-05590/2020|MW084605.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "A2151G" }, +"mutations": { "nuc" : [ "A2151G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "85", +"branch_attrs": { + "labels": { "nuc mutations": "G18281A,A20755C,G25784T" }, +"mutations": { "nuc" : [ "G18281A","A20755C","G25784T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.310"}}, +"children":[ { +"name": "Netherlands/NA_588/2020|LR883860.1|20", +"branch_attrs": { + "labels": { "nuc mutations": "A20742G" }, +"mutations": { "nuc" : [ "A20742G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_583/2020|LR883819.1|20", +"branch_attrs": { + "labels": { "nuc mutations": "C4113T,C6555T,C25731T" }, +"mutations": { "nuc" : [ "C4113T","C6555T","C25731T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "86", +"branch_attrs": { + "labels": { "nuc mutations": "C11916T" }, +"mutations": { "nuc" : [ "C11916T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "87", +"branch_attrs": { + "labels": { "nuc mutations": "G1990T,C2939T,A5264G,C16457T" }, +"mutations": { "nuc" : [ "G1990T","C2939T","A5264G","C16457T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.309"}}, +"children":[ { +"name": "USA/WA-S2992/2020|MW474166.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A" }, +"mutations": { "nuc" : [ "G521T","T847C","A2166G","C5221T","C6582T","G11521T","C22712T","C26010T","G26262A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-08-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-5698/2020|MW276260.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "G596A,G1820A,G9526T,C14183T,C28344T" }, +"mutations": { "nuc" : [ "G596A","G1820A","G9526T","C14183T","C28344T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "88", +"branch_attrs": { + "labels": { "nuc mutations": "G28376T" }, +"mutations": { "nuc" : [ "G28376T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.359"}}, +"children":[ { +"name": "USA/GA-CDC-4459/2020|MW130876.1|20-09-11", +"branch_attrs": { + "labels": { "nuc mutations": "T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T" }, +"mutations": { "nuc" : [ "T241A","C10039T","A12916T","C17733T","G18520A","T23431C","G26828A","A27224G","G27915A","C29077T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NY-QDX-1993/2020|MW190794.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "89", +"branch_attrs": { + "labels": { "nuc mutations": "G26020T" }, +"mutations": { "nuc" : [ "G26020T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.493"}}, +"children":[ { +"name": "USA/FL-BPHL-0321/2020|MT757040.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "T29128C" }, +"mutations": { "nuc" : [ "T29128C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1841/2020|MW206510.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C4012T" }, +"mutations": { "nuc" : [ "C4012T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "90", +"branch_attrs": { + "labels": { "nuc mutations": "G1186A,T4033C,C8986T,C25413T,C28674T,G28857T" }, +"mutations": { "nuc" : [ "G1186A","T4033C","C8986T","C25413T","C28674T","G28857T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.496"}}, +"children":[ { +"name": "USA/MN-MDH-1583/2020|MT997701.1|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "C8109T" }, +"mutations": { "nuc" : [ "C8109T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1585/2020|MT997703.1|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "T12925C" }, +"mutations": { "nuc" : [ "T12925C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "91", +"branch_attrs": { + "labels": { "nuc mutations": "C18998T,G29540A" }, +"mutations": { "nuc" : [ "C18998T","G29540A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "92", +"branch_attrs": { + "labels": { "nuc mutations": "A20553G" }, +"mutations": { "nuc" : [ "A20553G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.507"}}, +"children":[ { +"name": "USA/COVID20-0777/2020|MW002812.1|20-06-26", +"branch_attrs": { + "labels": { "nuc mutations": "G4285A,G6421C,C16173T" }, +"mutations": { "nuc" : [ "G4285A","G6421C","C16173T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1147/2020|MT992749.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "G22487C" }, +"mutations": { "nuc" : [ "G22487C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "93", +"branch_attrs": { + "labels": { "nuc mutations": "G25947C" }, +"mutations": { "nuc" : [ "G25947C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.503"}}, +"children":[ { +"name": "USA/VA-DCLS-1512/2020|MW197472.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G526T,T6949C,C29366T,C29750T" }, +"mutations": { "nuc" : [ "G526T","T6949C","C29366T","C29750T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-1275/2020|MT533209.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C23685T,G27703T" }, +"mutations": { "nuc" : [ "C23685T","G27703T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "94", +"branch_attrs": { + "labels": { "nuc mutations": "C28863T" }, +"mutations": { "nuc" : [ "C28863T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.499"}}, +"children":[ { +"name": "USA/NY-QDX-2365/2020|MW191144.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ARG/Cordoba-891/2020|MW633900.1|20-09-14", +"branch_attrs": { + "labels": { "nuc mutations": "A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T" }, +"mutations": { "nuc" : [ "A642G","A2647G","C7279T","C7528T","C9803T","C10450T","C29445T","C29555T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-14"}, "country": {"value": "ARG"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "95", +"branch_attrs": { + "labels": { "nuc mutations": "C19145T" }, +"mutations": { "nuc" : [ "C19145T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.508"}}, +"children":[ { +"name": "USA/CA-CZB-5668/2020|MW276489.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "G4285T,T5059C,C16230T,C23525T,G25471T" }, +"mutations": { "nuc" : [ "G4285T","T5059C","C16230T","C23525T","G25471T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2139/2020|MT750510.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5540A" }, +"mutations": { "nuc" : [ "C5540A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "96", +"branch_attrs": { + "labels": { "nuc mutations": "T13914C" }, +"mutations": { "nuc" : [ "T13914C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.502"}}, +"children":[ { +"name": "USA/FL-BPHL-1324/2020|MW023523.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T" }, +"mutations": { "nuc" : [ "C4276T","G7936T","C14928T","C15960T","C19186T","T20838C","C23536T","C23595T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1988/2020|MW286761.1|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "G3638A,C16217T" }, +"mutations": { "nuc" : [ "G3638A","C16217T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "97", +"branch_attrs": { + "labels": { "nuc mutations": "C10458T,G26828T" }, +"mutations": { "nuc" : [ "C10458T","G26828T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.501"}}, +"children":[ { +"name": "USA/NC-QDX-174/2020|MT786825.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "C18693A" }, +"mutations": { "nuc" : [ "C18693A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/1453xE2/2020|MW521402.1|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "G7042T,C11396A,C21855T,G28655T" }, +"mutations": { "nuc" : [ "G7042T","C11396A","C21855T","G28655T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "98", +"branch_attrs": { + "labels": { "nuc mutations": "A9984C,G25445T" }, +"mutations": { "nuc" : [ "A9984C","G25445T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.500"}}, +"children":[ { +"name": "USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "A9935G,T16632C,C19185T,C28824T,G29628T" }, +"mutations": { "nuc" : [ "A9935G","T16632C","C19185T","C28824T","G29628T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2867/2020|MW173410.1|20-09-20", +"branch_attrs": { + "labels": { "nuc mutations": "G9278A,G11693T,C14937T,C21017T,C21219T" }, +"mutations": { "nuc" : [ "G9278A","G11693T","C14937T","C21017T","C21219T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "99", +"branch_attrs": { + "labels": { "nuc mutations": "C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T" }, +"mutations": { "nuc" : [ "C66A","C4455T","C7768T","A8773G","C17304T","T24805C","C26270T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.505"}}, +"children":[ { +"name": "England/MILK-6166F0/2020|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "T22912G" }, +"mutations": { "nuc" : [ "T22912G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9BCA93/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C782T,G1210T,C28045T" }, +"mutations": { "nuc" : [ "C782T","G1210T","C28045T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "100", +"branch_attrs": { + "labels": { "nuc mutations": "G26217T" }, +"mutations": { "nuc" : [ "G26217T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.504"}}, +"children":[ { +"name": "ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19", +"branch_attrs": { + "labels": { "nuc mutations": "C21731T,G29645T" }, +"mutations": { "nuc" : [ "C21731T","G29645T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-19"}, "country": {"value": "ISR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-947D3A/2020|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "G105T,T10288C,C13821T,C26625T,A29752T" }, +"mutations": { "nuc" : [ "G105T","T10288C","C13821T","C26625T","A29752T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "101", +"branch_attrs": { + "labels": { "nuc mutations": "C715T,A23586G" }, +"mutations": { "nuc" : [ "C715T","A23586G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.3"}}, +"children":[ { +"name": "USA/WI-UW-1126/2020|MT929103.1|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "G487A,C4876T,A5877G,C18555T,A27489G,C28045T" }, +"mutations": { "nuc" : [ "G487A","C4876T","A5877G","C18555T","A27489G","C28045T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-1071/2020|MT929023.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "G1957T,C2623T,C13115T,G22026T" }, +"mutations": { "nuc" : [ "G1957T","C2623T","C13115T","G22026T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "102", +"branch_attrs": { + "labels": { "nuc mutations": "C13252T" }, +"mutations": { "nuc" : [ "C13252T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.494"}}, +"children":[ { +"name": "USA/VA-DCLS-0481/2020|MT951936.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "C799T,C6701T,C23604T" }, +"mutations": { "nuc" : [ "C799T","C6701T","C23604T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "103", +"branch_attrs": { + "labels": { "nuc mutations": "C16650T,A20675T,G29179T,G29779T" }, +"mutations": { "nuc" : [ "C16650T","A20675T","G29179T","G29779T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.497"}}, +"children":[ { +"name": "KOR/YS006/2020|MW345824.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C26261T" }, +"mutations": { "nuc" : [ "C26261T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-04"}, "country": {"value": "KOR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "KOR/YS008/2020|MW345825.1|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-07"}, "country": {"value": "KOR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "104", +"branch_attrs": { + "labels": { "nuc mutations": "G28027T,G29742T" }, +"mutations": { "nuc" : [ "G28027T","G29742T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.495"}}, +"children":[ { +"name": "USA/OR-QDX-3447/2020|MW521776.1|20-08-11", +"branch_attrs": { + "labels": { "nuc mutations": "C12754T,A14012T,G14250T,C22687T" }, +"mutations": { "nuc" : [ "C12754T","A14012T","G14250T","C22687T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1037/2020|MT642186.1|20-05-03", +"branch_attrs": { + "labels": { "nuc mutations": "A18671C,C25466T" }, +"mutations": { "nuc" : [ "A18671C","C25466T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "105", +"branch_attrs": { + "labels": { "nuc mutations": "G1738T,C11916T,C28087T" }, +"mutations": { "nuc" : [ "G1738T","C11916T","C28087T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.509"}}, +"children":[ { +"name": "USA/FL-BPHL-1680/2020|MW166145.1|20-08-11", +"branch_attrs": { + "labels": { "nuc mutations": "G3242A,T11449C,T14508C,A26126T,T28087C" }, +"mutations": { "nuc" : [ "G3242A","T11449C","T14508C","A26126T","T28087C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1350/2020|MW023549.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "G9928T,A20716G,A24383G,G25538T,G28123T" }, +"mutations": { "nuc" : [ "G9928T","A20716G","A24383G","G25538T","G28123T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "106", +"branch_attrs": { + "labels": { "nuc mutations": "A12820G,C16762T,A17637G,C20762T,C28887T" }, +"mutations": { "nuc" : [ "A12820G","C16762T","A17637G","C20762T","C28887T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.346"}}, +"children":[ { +"name": "USA/NMDOH-2020305755/2020|MW070069.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "C676T,A3536G,C29370G" }, +"mutations": { "nuc" : [ "C676T","A3536G","C29370G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NMDOH-2020308468/2020|MW228235.1|20-08-24", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "107", +"branch_attrs": { + "labels": { "nuc mutations": "C379A" }, +"mutations": { "nuc" : [ "C379A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.320"}}, +"children":[ { +"name": "USA/CA-CZB-1517/2020|MT628191.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C10369T,C12115T,G12202T" }, +"mutations": { "nuc" : [ "C10369T","C12115T","G12202T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-1793/2020|MT750334.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "A20503G" }, +"mutations": { "nuc" : [ "A20503G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "108", +"branch_attrs": { + "labels": { "nuc mutations": "C27964T" }, +"mutations": { "nuc" : [ "C27964T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.521"}}, +"children":[ { +"name": "USA/WA-UW-2108/2020|MT345811.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "G3259T,T27964C" }, +"mutations": { "nuc" : [ "G3259T","T27964C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1434/2020|MT893000.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "G14580A,T19527C,A19821G,G22346T,C28099T,C29722T" }, +"mutations": { "nuc" : [ "G14580A","T19527C","A19821G","G22346T","C28099T","C29722T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "109", +"branch_attrs": { + "labels": { "nuc mutations": "C10319T,A18424G,C21304T,G25907T,C28472T,C28869T" }, +"mutations": { "nuc" : [ "C10319T","A18424G","C21304T","G25907T","C28472T","C28869T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": "20G"}, "MAT_Clade_1": {"value": "B.1.2"}}, +"children":[ { +"name": "USA/AK-PHL660/2020|MW173157.1|20-06-27", +"branch_attrs": { + "labels": { "nuc mutations": "A16872C" }, +"mutations": { "nuc" : [ "A16872C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "110", +"branch_attrs": { + "labels": { "nuc mutations": "G9928T" }, +"mutations": { "nuc" : [ "G9928T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/WI-UW-1194/2020|MT981478.1|20-08-11", +"branch_attrs": { + "labels": { "nuc mutations": "C10377T" }, +"mutations": { "nuc" : [ "C10377T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3284/2020|MW134086.1|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "A16148G,C16928T,G29422T" }, +"mutations": { "nuc" : [ "A16148G","C16928T","G29422T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "111", +"branch_attrs": { + "labels": { "nuc mutations": "T833C" }, +"mutations": { "nuc" : [ "T833C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "112", +"branch_attrs": { + "labels": { "nuc mutations": "A22320G" }, +"mutations": { "nuc" : [ "A22320G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.426"}}, +"children":[ { +"name": "USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26", +"branch_attrs": { + "labels": { "nuc mutations": "C3411T,G8114A,C11095T,G15908A" }, +"mutations": { "nuc" : [ "C3411T","G8114A","C11095T","G15908A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T" }, +"mutations": { "nuc" : [ "G2525A","C2788T","G6443A","C6539T","C6690T","C10440T","G15451T","C18463T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "113", +"branch_attrs": { + "labels": { "nuc mutations": "G9705T" }, +"mutations": { "nuc" : [ "G9705T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.425"}}, +"children":[ { +"name": "USA/UT-05592/2020|MW054143.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "A3121C,G23009T,G27637A,C29743T" }, +"mutations": { "nuc" : [ "A3121C","G23009T","G27637A","C29743T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C8389T,T19839C,G25523T,T29685G" }, +"mutations": { "nuc" : [ "C8389T","T19839C","G25523T","T29685G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "114", +"branch_attrs": { + "labels": { "nuc mutations": "C28833T" }, +"mutations": { "nuc" : [ "C28833T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.265"}}, +"children":[ { +"name": "USA/MN-QDX-981/2020|MW065078.1|20-03-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0164/2020|MT937827.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C3817T,A23813G" }, +"mutations": { "nuc" : [ "C3817T","A23813G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "115", +"branch_attrs": { + "labels": { "nuc mutations": "C9967T" }, +"mutations": { "nuc" : [ "C9967T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.336"}}, +"children":[ { +"name": "USA/VA-DCLS-1006/2020|MT952676.1|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "T18641C,C23208T,G25793T,C27807G" }, +"mutations": { "nuc" : [ "T18641C","C23208T","G25793T","C27807G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2685/2020|MW191430.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G17590T" }, +"mutations": { "nuc" : [ "G17590T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "116", +"branch_attrs": { + "labels": { "nuc mutations": "G10902A" }, +"mutations": { "nuc" : [ "G10902A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.514"}}, +"children":[ { +"name": "USA/FL-BPHL-0876/2020|MT890355.1|20-07-09", +"branch_attrs": { + "labels": { "nuc mutations": "C7173T,G11596T,C13994T,C25546T" }, +"mutations": { "nuc" : [ "C7173T","G11596T","C13994T","C25546T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0347/2020|MW114984.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G2659T,C3622T,G7936T,T9379A,A12148G,C18687T" }, +"mutations": { "nuc" : [ "G2659T","C3622T","G7936T","T9379A","A12148G","C18687T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "117", +"branch_attrs": { + "labels": { "nuc mutations": "G17808T" }, +"mutations": { "nuc" : [ "G17808T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.450"}}, +"children":[ { +"name": "USA/MN-QDX-1328/2020|MW065415.1|20-03-15", +"branch_attrs": { + "labels": { "nuc mutations": "C9693T" }, +"mutations": { "nuc" : [ "C9693T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1210/2020|MW246004.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C15352T" }, +"mutations": { "nuc" : [ "C15352T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "118", +"branch_attrs": { + "labels": { "nuc mutations": "C24378T" }, +"mutations": { "nuc" : [ "C24378T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.370"}}, +"children":[ { +"name": "USA/UT-00495/2020|MT444543.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G27717A" }, +"mutations": { "nuc" : [ "G27717A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-00353/2020|MT444564.1|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "T11131A" }, +"mutations": { "nuc" : [ "T11131A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "119", +"branch_attrs": { + "labels": { "nuc mutations": "C4878T,A22525G,C29272T,G29449T" }, +"mutations": { "nuc" : [ "C4878T","A22525G","C29272T","G29449T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.435"}}, +"children":[ { +"name": "USA/UT-02970/2020|MW053933.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "A22681C,G28202A" }, +"mutations": { "nuc" : [ "A22681C","G28202A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-08378/2020|MW206039.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C222T,A454G,C11750T,T17772C,G21099T,T29449G" }, +"mutations": { "nuc" : [ "C222T","A454G","C11750T","T17772C","G21099T","T29449G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "120", +"branch_attrs": { + "labels": { "nuc mutations": "G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T" }, +"mutations": { "nuc" : [ "G4520T","A6442G","T6934C","C12374T","C14786T","T15624C","C25904T","C28099T","C28932T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.423"}}, +"children":[ { +"name": "USA/IL-UW-1064/2020|MT929016.1|20-07-26", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1666/2020|MW280480.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "G7936A,A8040G,G29402T" }, +"mutations": { "nuc" : [ "G7936A","A8040G","G29402T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "121", +"branch_attrs": { + "labels": { "nuc mutations": "A19899T,A21464G" }, +"mutations": { "nuc" : [ "A19899T","A21464G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.294"}}, +"children":[ { +"name": "USA/WI-UW-1119/2020|MT929068.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-07-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-1005/2020|MT846691.1|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "G4232T,C9120T,A18500G,G22093A,T23296C,G25444A" }, +"mutations": { "nuc" : [ "G4232T","C9120T","A18500G","G22093A","T23296C","G25444A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "122", +"branch_attrs": { + "labels": { "nuc mutations": "C25777T,C29614T" }, +"mutations": { "nuc" : [ "C25777T","C29614T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.306"}}, +"children":[ { +"name": "USA/FL-BPHL-1651/2020|MW166116.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "G23311T,G24977C" }, +"mutations": { "nuc" : [ "G23311T","G24977C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-2138/2020|MW286694.1|20-06-27", +"branch_attrs": { + "labels": { "nuc mutations": "G25471C,G28899T,G29779T" }, +"mutations": { "nuc" : [ "G25471C","G28899T","G29779T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "123", +"branch_attrs": { + "labels": { "nuc mutations": "T8788C,G26951A" }, +"mutations": { "nuc" : [ "T8788C","G26951A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.39"}}, +"children":[ { +"name": "England/CAMB-7771E/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C4586T" }, +"mutations": { "nuc" : [ "C4586T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7DC91/2020|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "C4321T" }, +"mutations": { "nuc" : [ "C4321T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "124", +"branch_attrs": { + "labels": { "nuc mutations": "C7528T" }, +"mutations": { "nuc" : [ "C7528T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.324"}}, +"children":[ { +"name": "USA/WI-UW-1092/2020|MT929042.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "G271T,T13270C,C28093T,C28890T" }, +"mutations": { "nuc" : [ "G271T","T13270C","C28093T","C28890T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1232/2020|MW309089.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "G8213A" }, +"mutations": { "nuc" : [ "G8213A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "125", +"branch_attrs": { + "labels": { "nuc mutations": "C775T,C27923T,G28975T" }, +"mutations": { "nuc" : [ "C775T","C27923T","G28975T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.328"}}, +"children":[ { +"name": "USA/MD-MDH-0071/2020|MT827237.1|20-05-25", +"branch_attrs": { + "labels": { "nuc mutations": "C23683T" }, +"mutations": { "nuc" : [ "C23683T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0066/2020|MT827232.1|20-05-25", +"branch_attrs": { + "labels": { "nuc mutations": "C3044T,C9979T,C10369T,G19072T" }, +"mutations": { "nuc" : [ "C3044T","C9979T","C10369T","G19072T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "126", +"branch_attrs": { + "labels": { "nuc mutations": "A12557C" }, +"mutations": { "nuc" : [ "A12557C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.341"}}, +"children":[ { +"name": "USA/WA-QDX-235/2020|MT806806.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "A23534T" }, +"mutations": { "nuc" : [ "A23534T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1266/2020|MT821676.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "T4441C,G6125A,C17639T" }, +"mutations": { "nuc" : [ "T4441C","G6125A","C17639T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "127", +"branch_attrs": { + "labels": { "nuc mutations": "C1917T" }, +"mutations": { "nuc" : [ "C1917T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.332"}}, +"children":[ { +"name": "USA/VA-DCLS-0426/2020|MT679166.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "C8327T" }, +"mutations": { "nuc" : [ "C8327T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-0187/2020|MT450889.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "G29431T" }, +"mutations": { "nuc" : [ "G29431T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "128", +"branch_attrs": { + "labels": { "nuc mutations": "C23191T" }, +"mutations": { "nuc" : [ "C23191T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.325"}}, +"children":[ { +"name": "USA/UT-QDX-2224/2020|MW191025.1|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "A25910C" }, +"mutations": { "nuc" : [ "A25910C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0313/2020|MW115058.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C9907T,C17125T,T18144C" }, +"mutations": { "nuc" : [ "C9907T","C17125T","T18144C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "129", +"branch_attrs": { + "labels": { "nuc mutations": "G15906T" }, +"mutations": { "nuc" : [ "G15906T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.293"}}, +"children":[ { +"name": "USA/FL-QDX-1620/2020|MW190373.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C5548T,C28153T" }, +"mutations": { "nuc" : [ "C5548T","C28153T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-0109/2020|MT872200.1|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T" }, +"mutations": { "nuc" : [ "T5260A","C7169T","G13604C","C13876T","A16085G","C19273T","A28081T","C28754T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-04-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "130", +"branch_attrs": { + "labels": { "nuc mutations": "C10582T" }, +"mutations": { "nuc" : [ "C10582T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "131", +"branch_attrs": { + "labels": { "nuc mutations": "C1076T" }, +"mutations": { "nuc" : [ "C1076T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.40"}}, +"children":[ { +"name": "Scotland/EDB3598/2020|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "G22244T,C26461T" }, +"mutations": { "nuc" : [ "G22244T","C26461T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-27"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB2451/2020|20-04-23", +"branch_attrs": { + "labels": { "nuc mutations": "T10963A" }, +"mutations": { "nuc" : [ "T10963A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-23"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "132", +"branch_attrs": { + "labels": { "nuc mutations": "C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T" }, +"mutations": { "nuc" : [ "C3099T","G4960T","C4965T","C6070T","C7303T","C7564T","C10279T","C10301A","C10525T","G10688T","G11851T","C14230A","G21800T","G27632T","C27804T","C28830A","G29402T","G29779T" ] } + }, +"node_attrs": { + "div":25, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.367"}}, +"children":[ { +"name": "England/MILK-9934B2/2020|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "C9246T,C11747T,C13378T,G19056T,C28744T" }, +"mutations": { "nuc" : [ "C9246T","C11747T","C13378T","G19056T","C28744T" ] } + }, +"node_attrs": { "div": 30, "date": {"value": "20-08-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/240029/2020|LR880608.1|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "T27622C" }, +"mutations": { "nuc" : [ "T27622C" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-08-10"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "133", +"branch_attrs": { + "labels": { "nuc mutations": "C28887T" }, +"mutations": { "nuc" : [ "C28887T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "134", +"branch_attrs": { + "labels": { "nuc mutations": "C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T" }, +"mutations": { "nuc" : [ "C1302T","C1519T","A2526G","T3049C","G3689A","A11061G","C11747T","T13345C","A14774G","C15026T","G15438T","T16062C","G17334T","G17721T","G19962T","C25037T","C27945T" ] } + }, +"node_attrs": { + "div":24, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.411"}}, +"children":[ { +"name": "England/RAND-12B3F28/2021|21-02-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-02-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/RAND-12B3CF4/2021|21-02-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-02-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "135", +"branch_attrs": { + "labels": { "nuc mutations": "G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T" }, +"mutations": { "nuc" : [ "G17014T","G21600T","G22018T","T22917G","C26681T","A28272T","C29362T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "136", +"branch_attrs": { + "labels": { "nuc mutations": "G9738C,G13713A,C16394T" }, +"mutations": { "nuc" : [ "G9738C","G13713A","C16394T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.427"}}, +"children":[ { +"name": "USA/CA-QDX-2817/2020|MW460624.1|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "A9492C,C21638T,C25919T" }, +"mutations": { "nuc" : [ "A9492C","C21638T","C25919T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2803/2020|MW460610.1|20-12-26", +"branch_attrs": { + "labels": { "nuc mutations": "C11345T,C13860T" }, +"mutations": { "nuc" : [ "C11345T","C13860T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "137", +"branch_attrs": { + "labels": { "nuc mutations": "C2395T,T2597C,A12878G,T24349C,G27890T" }, +"mutations": { "nuc" : [ "C2395T","T2597C","A12878G","T24349C","G27890T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.94"}}, +"children":[ { +"name": "USA/CA-QDX-3684/2021|MW545275.1|21-01-08", +"branch_attrs": { + "labels": { "nuc mutations": "T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C" }, +"mutations": { "nuc" : [ "T2395C","G2516T","A3712G","A5780G","A5999G","C7528T","A10323G","C11866T","C13378T","G15452T","T17014G","C19164T","A20268G","T21600G","G21974T","G22917T","T26681C","T27890G","T29362C" ] } + }, +"node_attrs": { "div": 38, "date": {"value": "21-01-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13", +"branch_attrs": { + "labels": { "nuc mutations": "A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T" }, +"mutations": { "nuc" : [ "A1194G","A2406G","A5780G","G15452T","T17014G","A20268G","G22917T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-07-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "138", +"branch_attrs": { + "labels": { "nuc mutations": "C8947T,C12100T" }, +"mutations": { "nuc" : [ "C8947T","C12100T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.429"}}, +"children":[ { +"name": "USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08", +"branch_attrs": { + "labels": { "nuc mutations": "C1380T,C6539T,T7813C,A10417G,A19476G,C21638T,G22708T,G28628T,T29362C" }, +"mutations": { "nuc" : [ "C1380T","C6539T","T7813C","A10417G","A19476G","C21638T","G22708T","G28628T","T29362C" ] } + }, +"node_attrs": { "div": 30, "date": {"value": "21-01-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20", +"branch_attrs": { + "labels": { "nuc mutations": "C1601T,C4918T" }, +"mutations": { "nuc" : [ "C1601T","C4918T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "139", +"branch_attrs": { + "labels": { "nuc mutations": "T1171C,A5747G,C10789T,G17259T,G24007A" }, +"mutations": { "nuc" : [ "T1171C","A5747G","C10789T","G17259T","G24007A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.375"}}, +"children":[ { +"name": "USA/OH-UHTL-3/2020|MW585340.1|20-01-05", +"branch_attrs": { + "labels": { "nuc mutations": "C10228T,C13335T,T14408C,C25611T,G29705T" }, +"mutations": { "nuc" : [ "C10228T","C13335T","T14408C","C25611T","G29705T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-01-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18", +"branch_attrs": { + "labels": { "nuc mutations": "C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G" }, +"mutations": { "nuc" : [ "C1437T","G3231T","C6385A","C14805T","C21431T","C25844T","A26664G" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "140", +"branch_attrs": { + "labels": { "nuc mutations": "C6843T,T11764C,G29402T" }, +"mutations": { "nuc" : [ "C6843T","T11764C","G29402T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.433"}}, +"children":[ { +"name": "USA/MA-MGH-02814/2020|MW454549.1|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "T21294C,G28936A,A29115T" }, +"mutations": { "nuc" : [ "T21294C","G28936A","A29115T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA-MGH-03386/2020|MW454697.1|20-11-09", +"branch_attrs": { + "labels": { "nuc mutations": "C13176T,T17040C,C24106T" }, +"mutations": { "nuc" : [ "C13176T","T17040C","C24106T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-11-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "141", +"branch_attrs": { + "labels": { "nuc mutations": "C28893T" }, +"mutations": { "nuc" : [ "C28893T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.311"}}, +"children":[ { +"name": "USA/TX-DSHS-0780/2020|MW147526.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "G22021A,C22998T,G23501T" }, +"mutations": { "nuc" : [ "G22021A","C22998T","G23501T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1557/2020|MT958254.1|20-08-03", +"branch_attrs": { + "labels": { "nuc mutations": "T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T" }, +"mutations": { "nuc" : [ "T83C","C583T","G2468A","C17410T","A23998G","C25553T","T27856C","G29543T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "142", +"branch_attrs": { + "labels": { "nuc mutations": "T9070C" }, +"mutations": { "nuc" : [ "T9070C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.323"}}, +"children":[ { +"name": "USA/MN-MDH-1596/2020|MT997714.1|20-05-12", +"branch_attrs": { + "labels": { "nuc mutations": "C20325T" }, +"mutations": { "nuc" : [ "C20325T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB0731/2020|MT385450.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "G9049T,T10960C" }, +"mutations": { "nuc" : [ "G9049T","T10960C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "143", +"branch_attrs": { + "labels": { "nuc mutations": "C25688T" }, +"mutations": { "nuc" : [ "C25688T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "144", +"branch_attrs": { + "labels": { "nuc mutations": "C4320T" }, +"mutations": { "nuc" : [ "C4320T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.12"}}, +"children":[ { +"name": "England/MILK-958598/2020|20-06-09", +"branch_attrs": { + "labels": { "nuc mutations": "C5175T,A15283G,G16861T,C20844T,T27539C" }, +"mutations": { "nuc" : [ "C5175T","A15283G","G16861T","C20844T","T27539C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-4F4092/2020|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "C1627T,C11494T,C14076T,T18309C,G20670A,C29529T" }, +"mutations": { "nuc" : [ "C1627T","C11494T","C14076T","T18309C","G20670A","C29529T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "145", +"branch_attrs": { + "labels": { "nuc mutations": "T13006C" }, +"mutations": { "nuc" : [ "T13006C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.356"}}, +"children":[ { +"name": "England/LIVE-A91F7/2020|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "C19186T" }, +"mutations": { "nuc" : [ "C19186T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AE865/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "C1437T,A24070T,C26013T,C27945T" }, +"mutations": { "nuc" : [ "C1437T","A24070T","C26013T","C27945T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "146", +"branch_attrs": { + "labels": { "nuc mutations": "G3892T" }, +"mutations": { "nuc" : [ "G3892T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.268"}}, +"children":[ { +"name": "USA/MA_MGH_00458/2020|MT520347.1|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "G26787A" }, +"mutations": { "nuc" : [ "G26787A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00445/2020|MT520273.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G20062T" }, +"mutations": { "nuc" : [ "G20062T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "147", +"branch_attrs": { + "labels": { "nuc mutations": "C2536T,C10376T,C14931T,C24082T,C27005T,A28880G" }, +"mutations": { "nuc" : [ "C2536T","C10376T","C14931T","C24082T","C27005T","A28880G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.318"}}, +"children":[ { +"name": "USA/FL-BPHL-1724/2020|MW206414.1|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "G2272A,C7267T,G21193T" }, +"mutations": { "nuc" : [ "G2272A","C7267T","G21193T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1147/2020|MT956757.1|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "A5368G,C14220T,G21193T,C29363T" }, +"mutations": { "nuc" : [ "A5368G","C14220T","G21193T","C29363T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "148", +"branch_attrs": { + "labels": { "nuc mutations": "C16260T,C28821A" }, +"mutations": { "nuc" : [ "C16260T","C28821A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.369"}}, +"children":[ { +"name": "USA/CA-CZB-3886/2020|MW134282.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5979T,A9337G,C18695T" }, +"mutations": { "nuc" : [ "C5979T","A9337G","C18695T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/IL-UW-385/2020|MT772536.1|20-05-23", +"branch_attrs": { + "labels": { "nuc mutations": "C12525T,G21604T,C25728T,G28378T" }, +"mutations": { "nuc" : [ "C12525T","G21604T","C25728T","G28378T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "149", +"branch_attrs": { + "labels": { "nuc mutations": "C20555T,C21772T" }, +"mutations": { "nuc" : [ "C20555T","C21772T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.287"}}, +"children":[ { +"name": "USA/NMDOH-2020135004/2020|MW006582.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "A6414G,A22101T,G24872T" }, +"mutations": { "nuc" : [ "A6414G","A22101T","G24872T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NMDOH-2020126568/2020|MW006567.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "C16428T" }, +"mutations": { "nuc" : [ "C16428T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "150", +"branch_attrs": { + "labels": { "nuc mutations": "G25523T,T27869C" }, +"mutations": { "nuc" : [ "G25523T","T27869C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.38"}}, +"children":[ { +"name": "USA/MN-MDH-1464/2020|MT919997.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "C3044T" }, +"mutations": { "nuc" : [ "C3044T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-2008/2020|MT326031.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "G4975T,T29194C" }, +"mutations": { "nuc" : [ "G4975T","T29194C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "151", +"branch_attrs": { + "labels": { "nuc mutations": "T20049C,C21627A,C23655T" }, +"mutations": { "nuc" : [ "T20049C","C21627A","C23655T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.515"}}, +"children":[ { +"name": "USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C11102T,A12174G" }, +"mutations": { "nuc" : [ "C11102T","A12174G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-03041/2020|MW053962.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C22295T,C22323T" }, +"mutations": { "nuc" : [ "C22295T","C22323T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "152", +"branch_attrs": { + "labels": { "nuc mutations": "C66T,C17069T,C26801T" }, +"mutations": { "nuc" : [ "C66T","C17069T","C26801T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.348"}}, +"children":[ { +"name": "USA/MD-MDH-0129/2020|MT937319.1|20-07-08", +"branch_attrs": { + "labels": { "nuc mutations": "C13761T" }, +"mutations": { "nuc" : [ "C13761T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1524/2020|MW349179.1|20-06-23", +"branch_attrs": { + "labels": { "nuc mutations": "A26864T" }, +"mutations": { "nuc" : [ "A26864T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "153", +"branch_attrs": { + "labels": { "nuc mutations": "C26625T" }, +"mutations": { "nuc" : [ "C26625T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.413"}}, +"children":[ { +"name": "USA/WA-UW-6327/2020|MT412324.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C5240G" }, +"mutations": { "nuc" : [ "C5240G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-3832/2020|MT358685.1|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "C3141A,C17766T" }, +"mutations": { "nuc" : [ "C3141A","C17766T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "154", +"branch_attrs": { + "labels": { "nuc mutations": "C27847T" }, +"mutations": { "nuc" : [ "C27847T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.360"}}, +"children":[ { +"name": "USA/MI-QDX-371/2020|MW064412.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "A2948G" }, +"mutations": { "nuc" : [ "A2948G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-QDX-298/2020|MW064340.1|20-03-21", +"branch_attrs": { + "labels": { "nuc mutations": "C6628T" }, +"mutations": { "nuc" : [ "C6628T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "155", +"branch_attrs": { + "labels": { "nuc mutations": "T8041C,G22225T" }, +"mutations": { "nuc" : [ "T8041C","G22225T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.366"}}, +"children":[ { +"name": "USA/TX-QDX-261/2020|MT806804.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C18029T" }, +"mutations": { "nuc" : [ "C18029T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NMDOH-2020174703/2020|MW070044.1|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "G26828A,C28005T" }, +"mutations": { "nuc" : [ "G26828A","C28005T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "156", +"branch_attrs": { + "labels": { "nuc mutations": "C335T,T16425G" }, +"mutations": { "nuc" : [ "C335T","T16425G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.363"}}, +"children":[ { +"name": "USA/WA-S2725/2020|MT947550.1|20-07-07", +"branch_attrs": { + "labels": { "nuc mutations": "G248T,T4138G,C9120T,A12197C,C15951T,G16425T,G22918T" }, +"mutations": { "nuc" : [ "G248T","T4138G","C9120T","A12197C","C15951T","G16425T","G22918T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0675/2020|MW093567.1|20-07-16", +"branch_attrs": { + "labels": { "nuc mutations": "G526C" }, +"mutations": { "nuc" : [ "G526C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "157", +"branch_attrs": { + "labels": { "nuc mutations": "T6905G,C13994T,C17518T,G21724T,G23120T,C25667T" }, +"mutations": { "nuc" : [ "T6905G","C13994T","C17518T","G21724T","G23120T","C25667T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.305"}}, +"children":[ { +"name": "USA/CA-CZB-10856/2020|MW276376.1|20-07-28", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C21058T,G21468T,G25681A,C27603T" }, +"mutations": { "nuc" : [ "C1912T","C21058T","G21468T","G25681A","C27603T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-994/2020|MT846680.1|20-07-20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "158", +"branch_attrs": { + "labels": { "nuc mutations": "C1968T,G29705T" }, +"mutations": { "nuc" : [ "C1968T","G29705T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.117"}}, +"children":[ { +"name": "England/BRIS-128CA3/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4586T,C29738T" }, +"mutations": { "nuc" : [ "C4586T","C29738T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12B1CF/2020|20-05-15", +"branch_attrs": { + "labels": { "nuc mutations": "C7843T,C9438T,T15254C,T16062C" }, +"mutations": { "nuc" : [ "C7843T","C9438T","T15254C","T16062C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "159", +"branch_attrs": { + "labels": { "nuc mutations": "G28808T,G29434C" }, +"mutations": { "nuc" : [ "G28808T","G29434C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.519"}}, +"children":[ { +"name": "England/BRIS-12C762/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "G10096A,G23755T,G24199T" }, +"mutations": { "nuc" : [ "G10096A","G23755T","G24199T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-127AD7/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "G3638T" }, +"mutations": { "nuc" : [ "G3638T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "160", +"branch_attrs": { + "labels": { "nuc mutations": "C5310T,C12294T,C25511T" }, +"mutations": { "nuc" : [ "C5310T","C12294T","C25511T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.304"}}, +"children":[ { +"name": "USA/WI-UW-491/2020|MT750074.1|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "C2003T,T22825C" }, +"mutations": { "nuc" : [ "C2003T","T22825C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-522/2020|MT750102.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "161", +"branch_attrs": { + "labels": { "nuc mutations": "C11919T" }, +"mutations": { "nuc" : [ "C11919T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.264"}}, +"children":[ { +"name": "USA/DC-HP00089/2020|MT509482.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C9510T" }, +"mutations": { "nuc" : [ "C9510T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-03817/2020|MT873871.1|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A13440G,C21998T" }, +"mutations": { "nuc" : [ "A13440G","C21998T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "162", +"branch_attrs": { + "labels": { "nuc mutations": "G1463A,G7557A,C8818T" }, +"mutations": { "nuc" : [ "G1463A","G7557A","C8818T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.330"}}, +"children":[ { +"name": "USA/MN-MDH-1643/2020|MW020074.1|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "C3264T,G21204T" }, +"mutations": { "nuc" : [ "C3264T","G21204T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-1610/2020|MT997728.1|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "A20284G,C22477T,C23604T" }, +"mutations": { "nuc" : [ "A20284G","C22477T","C23604T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "163", +"branch_attrs": { + "labels": { "nuc mutations": "C5183T" }, +"mutations": { "nuc" : [ "C5183T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.313"}}, +"children":[ { +"name": "USA/IL-UW-1065/2020|MT929017.1|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "G28878T" }, +"mutations": { "nuc" : [ "G28878T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2335/2020|MW191073.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "A361G,C27596T" }, +"mutations": { "nuc" : [ "A361G","C27596T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "164", +"branch_attrs": { + "labels": { "nuc mutations": "C25976A" }, +"mutations": { "nuc" : [ "C25976A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.331"}}, +"children":[ { +"name": "USA/MI-QDX-620/2020|MW064645.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G3091A" }, +"mutations": { "nuc" : [ "G3091A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MI-QDX-595/2020|MW064630.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C18981T" }, +"mutations": { "nuc" : [ "C18981T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "165", +"branch_attrs": { + "labels": { "nuc mutations": "C7851T,C20233T" }, +"mutations": { "nuc" : [ "C7851T","C20233T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.165"}}, +"children":[ { +"name": "England/BRIS-12D9F2/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A20262G" }, +"mutations": { "nuc" : [ "A20262G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12B156/2020|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "A13707G" }, +"mutations": { "nuc" : [ "A13707G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "166", +"branch_attrs": { + "labels": { "nuc mutations": "C25572T" }, +"mutations": { "nuc" : [ "C25572T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.338"}}, +"children":[ { +"name": "USA/WA-QDX-2548/2020|MW191307.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "G29747T" }, +"mutations": { "nuc" : [ "G29747T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1161/2020|MT451779.1|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "C18744T,C29284T" }, +"mutations": { "nuc" : [ "C18744T","C29284T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-09"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "167", +"branch_attrs": { + "labels": { "nuc mutations": "C16762T" }, +"mutations": { "nuc" : [ "C16762T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.452"}}, +"children":[ { +"name": "USA/CA-CZB-2223/2020|MW035933.1|20-05-31", +"branch_attrs": { + "labels": { "nuc mutations": "G4105A,C4878T,G10759T,G18803T,A24478T,C29296T" }, +"mutations": { "nuc" : [ "G4105A","C4878T","G10759T","G18803T","A24478T","C29296T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-4063/2020|MW134429.1|20-08-04", +"branch_attrs": { + "labels": { "nuc mutations": "A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T" }, +"mutations": { "nuc" : [ "A964G","C2433T","C3602T","C19572T","G22112A","A24894C","G27583T","G29024T","C29095T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "168", +"branch_attrs": { + "labels": { "nuc mutations": "G29291A" }, +"mutations": { "nuc" : [ "G29291A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.321"}}, +"children":[ { +"name": "England/OXON-B15A5/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6627T,A11740T,G18984T,C24023T" }, +"mutations": { "nuc" : [ "C6627T","A11740T","G18984T","C24023T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-129D72/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C1593T,C10440T" }, +"mutations": { "nuc" : [ "C1593T","C10440T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "169", +"branch_attrs": { + "labels": { "nuc mutations": "A27821G" }, +"mutations": { "nuc" : [ "A27821G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.283"}}, +"children":[ { +"name": "USA/MN-MDH-1616/2020|MT997734.1|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "C2878T,G3146A" }, +"mutations": { "nuc" : [ "C2878T","G3146A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-CDC-6364/2020|MT967959.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "G7405T,G11113A,C12225T,G25437T,C25516T" }, +"mutations": { "nuc" : [ "G7405T","G11113A","C12225T","G25437T","C25516T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "170", +"branch_attrs": { + "labels": { "nuc mutations": "G2286A,A4197G,G7954T,A10552G,A28715T" }, +"mutations": { "nuc" : [ "G2286A","A4197G","G7954T","A10552G","A28715T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.340"}}, +"children":[ { +"name": "USA/VA-DCLS-1282/2020|MW067700.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T" }, +"mutations": { "nuc" : [ "C619T","A2286G","C2523T","G12892T","C13335T","C23053T","C23683T","C27845T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/COVID20-1144/2020|MW067817.1|20-07-10", +"branch_attrs": { + "labels": { "nuc mutations": "T25577G" }, +"mutations": { "nuc" : [ "T25577G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "171", +"branch_attrs": { + "labels": { "nuc mutations": "C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T" }, +"mutations": { "nuc" : [ "C823T","A2466G","C4084T","C6196T","G10753A","G11365A","C17145T","G27955A","C28854T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.444"}}, +"children":[ { +"name": "USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G26730T" }, +"mutations": { "nuc" : [ "G26730T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C5140T,G29290A" }, +"mutations": { "nuc" : [ "C5140T","G29290A" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "172", +"branch_attrs": { + "labels": { "nuc mutations": "C1887T" }, +"mutations": { "nuc" : [ "C1887T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.166"}}, +"children":[ { +"name": "USA/CA-QDX-2032/2020|MW190749.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G533A" }, +"mutations": { "nuc" : [ "G533A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2576/2020|MW191310.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "A27979T" }, +"mutations": { "nuc" : [ "A27979T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "173", +"branch_attrs": { + "labels": { "nuc mutations": "C829T,G28371T" }, +"mutations": { "nuc" : [ "C829T","G28371T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.120"}}, +"children":[ { +"name": "Wales/PHWC-1662B6/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A" }, +"mutations": { "nuc" : [ "G419A","G2281A","G3994A","C10956T","G11670A","C18508T","G27415A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-13"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-26B12/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-29"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "174", +"branch_attrs": { + "labels": { "nuc mutations": "C10851T" }, +"mutations": { "nuc" : [ "C10851T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.319"}}, +"children":[ { +"name": "USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09", +"branch_attrs": { + "labels": { "nuc mutations": "T3037C" }, +"mutations": { "nuc" : [ "T3037C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CT-UW-4372/2020|MT345874.1|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C3768T,C25584T" }, +"mutations": { "nuc" : [ "C3768T","C25584T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "175", +"branch_attrs": { + "labels": { "nuc mutations": "C5312T,G27852T" }, +"mutations": { "nuc" : [ "C5312T","G27852T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.167"}}, +"children":[ { +"name": "England/BRIS-12BF3E/2020|20-05-09", +"branch_attrs": { + "labels": { "nuc mutations": "G4960T,C6633T,T10732C,T20285G,C28005T" }, +"mutations": { "nuc" : [ "G4960T","C6633T","T10732C","T20285G","C28005T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12DF1E/2020|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "A5452G,C21846T,G28337A,G28378T" }, +"mutations": { "nuc" : [ "A5452G","C21846T","G28337A","G28378T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "176", +"branch_attrs": { + "labels": { "nuc mutations": "A8252G" }, +"mutations": { "nuc" : [ "A8252G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.267"}}, +"children":[ { +"name": "USA/CA-CZB-3630/2020|MW134171.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "C8637T,C9360T,G11540T,A23299G,G25311T,G29745T" }, +"mutations": { "nuc" : [ "C8637T","C9360T","G11540T","A23299G","G25311T","G29745T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "G15193A,C25626G" }, +"mutations": { "nuc" : [ "G15193A","C25626G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "177", +"branch_attrs": { + "labels": { "nuc mutations": "C1734T,C23664T" }, +"mutations": { "nuc" : [ "C1734T","C23664T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.487"}}, +"children":[ { +"name": "USA/TX-DSHS-1035/2020|MW228203.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "G840A,C19032T" }, +"mutations": { "nuc" : [ "G840A","C19032T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1428/2020|MW326536.1|20-06-23", +"branch_attrs": { + "labels": { "nuc mutations": "G12160T" }, +"mutations": { "nuc" : [ "G12160T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "178", +"branch_attrs": { + "labels": { "nuc mutations": "G1495T,T7332C,T7831A,G28845T" }, +"mutations": { "nuc" : [ "G1495T","T7332C","T7831A","G28845T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.355"}}, +"children":[ { +"name": "USA/TX-DSHS-0051/2020|MW039116.1|20-05-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1673/2020|MW406726.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "C9996T,C27498T,G28362C" }, +"mutations": { "nuc" : [ "C9996T","C27498T","G28362C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "179", +"branch_attrs": { + "labels": { "nuc mutations": "C28609T,G28621A,G28899T,C29171T,G29395A,G29628T" }, +"mutations": { "nuc" : [ "C28609T","G28621A","G28899T","C29171T","G29395A","G29628T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.516"}}, +"children":[ { +"name": "USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "C1060T,C2358T,C4543T,C9226T,C22227T,T24326C,T25510A,T29171C,G29511T" }, +"mutations": { "nuc" : [ "C1060T","C2358T","C4543T","C9226T","C22227T","T24326C","T25510A","T29171C","G29511T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1517/2020|MW197475.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "A10912G,C12733T" }, +"mutations": { "nuc" : [ "A10912G","C12733T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "180", +"branch_attrs": { + "labels": { "nuc mutations": "C475T,C5986T,A28389T" }, +"mutations": { "nuc" : [ "C475T","C5986T","A28389T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.337"}}, +"children":[ { +"name": "USA/WI-UW-1268/2020|MW035438.1|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "C9491T,C12754T,G15100T,C15154T,C20970T,C28657T" }, +"mutations": { "nuc" : [ "C9491T","C12754T","G15100T","C15154T","C20970T","C28657T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31", +"branch_attrs": { + "labels": { "nuc mutations": "C775T,C2488T" }, +"mutations": { "nuc" : [ "C775T","C2488T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "181", +"branch_attrs": { + "labels": { "nuc mutations": "G20709T" }, +"mutations": { "nuc" : [ "G20709T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.513"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-1021DD/2020|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "A6360G" }, +"mutations": { "nuc" : [ "A6360G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2429/2020|MW036038.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "C4002T,G17338T,A21080C,G22104T" }, +"mutations": { "nuc" : [ "C4002T","G17338T","A21080C","G22104T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "182", +"branch_attrs": { + "labels": { "nuc mutations": "G3231T,A12850G,C21364T,A23064C,C28890T" }, +"mutations": { "nuc" : [ "G3231T","A12850G","C21364T","A23064C","C28890T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.517"}}, +"children":[ { +"name": "USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30", +"branch_attrs": { + "labels": { "nuc mutations": "T16752G,C23064A" }, +"mutations": { "nuc" : [ "T16752G","C23064A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-12-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA-MGH-03346/2020|MW454682.1|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "C823T,A9397G,A23362T,G26654T,G29140A" }, +"mutations": { "nuc" : [ "C823T","A9397G","A23362T","G26654T","G29140A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-11-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "183", +"branch_attrs": { + "labels": { "nuc mutations": "G18213T,A18818G" }, +"mutations": { "nuc" : [ "G18213T","A18818G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.168"}}, +"children":[ { +"name": "Scotland/EDB6146/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "T7814C,C11339T,A21137G" }, +"mutations": { "nuc" : [ "T7814C","C11339T","A21137G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB6052/2020|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-08"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "184", +"branch_attrs": { + "labels": { "nuc mutations": "C9286T,G28899C" }, +"mutations": { "nuc" : [ "C9286T","G28899C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.312"}}, +"children":[ { +"name": "England/CAMB-7FBCF/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "A12556G" }, +"mutations": { "nuc" : [ "A12556G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-784BC/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "A13852G" }, +"mutations": { "nuc" : [ "A13852G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "185", +"branch_attrs": { + "labels": { "nuc mutations": "C25731T,C29625T" }, +"mutations": { "nuc" : [ "C25731T","C29625T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.512"}}, +"children":[ { +"name": "England/PHEC-15A73/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C7735T,C11757T,C18501T" }, +"mutations": { "nuc" : [ "C7735T","C11757T","C18501T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-796/2020|MW064788.1|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "C16329T,C23536T,G27906T" }, +"mutations": { "nuc" : [ "C16329T","C23536T","G27906T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "186", +"branch_attrs": { + "labels": { "nuc mutations": "C6406T,G18972A" }, +"mutations": { "nuc" : [ "C6406T","G18972A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.329"}}, +"children":[ { +"name": "B90|LR898037.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "A21360C" }, +"mutations": { "nuc" : [ "A21360C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "?"}, "country": {"value": "B90|LR898037.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "O9|LR963074.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "A1925C,C5796T" }, +"mutations": { "nuc" : [ "A1925C","C5796T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "?"}, "country": {"value": "O9|LR963074.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "187", +"branch_attrs": { + "labels": { "nuc mutations": "A24129G" }, +"mutations": { "nuc" : [ "A24129G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.315"}}, +"children":[ { +"name": "USA/TX-DSHS-1331/2020|MW322992.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G1325T,A6351C,C12741T" }, +"mutations": { "nuc" : [ "G1325T","A6351C","C12741T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-738/2020|MT772509.1|20-06-30", +"branch_attrs": { + "labels": { "nuc mutations": "T3049C,G4972A" }, +"mutations": { "nuc" : [ "T3049C","G4972A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "188", +"branch_attrs": { + "labels": { "nuc mutations": "C66T,A538G,T9107C" }, +"mutations": { "nuc" : [ "C66T","A538G","T9107C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.335"}}, +"children":[ { +"name": "USA/TX-DSHS-0596/2020|MW075691.1|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "T4324G,C23029T,T26543A,A28254G" }, +"mutations": { "nuc" : [ "T4324G","C23029T","T26543A","A28254G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0971/2020|MW217406.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "G23426C,A26070G" }, +"mutations": { "nuc" : [ "G23426C","A26070G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "189", +"branch_attrs": { + "labels": { "nuc mutations": "T4888A,G28727T" }, +"mutations": { "nuc" : [ "T4888A","G28727T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.492"}}, +"children":[ { +"name": "USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07", +"branch_attrs": { + "labels": { "nuc mutations": "T5674C,C8290T" }, +"mutations": { "nuc" : [ "T5674C","C8290T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18", +"branch_attrs": { + "labels": { "nuc mutations": "C466T,A17691G" }, +"mutations": { "nuc" : [ "C466T","A17691G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "190", +"branch_attrs": { + "labels": { "nuc mutations": "G7295T" }, +"mutations": { "nuc" : [ "G7295T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.115"}}, +"children":[ { +"name": "ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09", +"branch_attrs": { + "labels": { "nuc mutations": "C28290T" }, +"mutations": { "nuc" : [ "C28290T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-09"}, "country": {"value": "ISR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-946515/2020|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T" }, +"mutations": { "nuc" : [ "C4455T","C12784T","G21809A","T22150C","G23678T","G25523T","C27297T","G28001T","G28346T","G28917T","C29247T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "191", +"branch_attrs": { + "labels": { "nuc mutations": "C2416T" }, +"mutations": { "nuc" : [ "C2416T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "192", +"branch_attrs": { + "labels": { "nuc mutations": "G26233T,C27881T" }, +"mutations": { "nuc" : [ "G26233T","C27881T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.276"}}, +"children":[ { +"name": "USA/FL-BPHL-1462/2020|MW040672.1|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1813/2020|MW206463.1|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A16766G,T28250G,G28681A" }, +"mutations": { "nuc" : [ "A16766G","T28250G","G28681A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "193", +"branch_attrs": { + "labels": { "nuc mutations": "G8371T" }, +"mutations": { "nuc" : [ "G8371T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "194", +"branch_attrs": { + "labels": { "nuc mutations": "C2937T" }, +"mutations": { "nuc" : [ "C2937T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.281"}}, +"children":[ { +"name": "BHR/600023154_S29/2020|MW237743.1|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G" }, +"mutations": { "nuc" : [ "G1550A","G2494A","G7320A","G20247T","C23893T","C26645T","T27499C","T28120C","A28959G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-14"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BHR/920262933_S19_L001/2020|MW228054.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C21310A" }, +"mutations": { "nuc" : [ "C21310A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-19"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "195", +"branch_attrs": { + "labels": { "nuc mutations": "C22477T" }, +"mutations": { "nuc" : [ "C22477T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "196", +"branch_attrs": { + "labels": { "nuc mutations": "C882T,C17746T,G19962T,G28907T" }, +"mutations": { "nuc" : [ "C882T","C17746T","G19962T","G28907T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.282"}}, +"children":[ { +"name": "England/ALDP-955F15/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "G25793A" }, +"mutations": { "nuc" : [ "G25793A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9A6856/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "T2533C,T3873G,A8031G,G23126T,C26340T" }, +"mutations": { "nuc" : [ "T2533C","T3873G","A8031G","G23126T","C26340T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "197", +"branch_attrs": { + "labels": { "nuc mutations": "C3811T,G22225A" }, +"mutations": { "nuc" : [ "C3811T","G22225A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.477"}}, +"children":[ { +"name": "England/ALDP-94EB75/2020|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6E2806/2020|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "T16456G,C27769G" }, +"mutations": { "nuc" : [ "T16456G","C27769G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "198", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A" }, +"mutations": { "nuc" : [ "C9430T","A15477T","C18395T","A20622T","G20623T","A20624T","C23730T","A26319G","C28854T","G29044A" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.389"}}, +"children":[ { +"name": "Scotland/QEUH-969725/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2135T,G23856T" }, +"mutations": { "nuc" : [ "C2135T","G23856T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AD1648/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "C1514T,T6141A,C11490T,G13397T,C27577T" }, +"mutations": { "nuc" : [ "C1514T","T6141A","C11490T","G13397T","C27577T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "199", +"branch_attrs": { + "labels": { "nuc mutations": "T15366C" }, +"mutations": { "nuc" : [ "T15366C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.483"}}, +"children":[ { +"name": "USA/WI-UW-249/2020|MT706376.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C8016T,G28903T" }, +"mutations": { "nuc" : [ "C8016T","G28903T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-84/2020|MT706205.1|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "C18481T,G25687A,C29296T" }, +"mutations": { "nuc" : [ "C18481T","G25687A","C29296T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "200", +"branch_attrs": { + "labels": { "nuc mutations": "C10712T" }, +"mutations": { "nuc" : [ "C10712T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.37"}}, +"children":[ { +"name": "USA/VA-DCLS-0593/2020|MT951960.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "T25304C,C28890T" }, +"mutations": { "nuc" : [ "T25304C","C28890T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-CDC-3009/2020|MT512440.1|20-03-10", +"branch_attrs": { + "labels": { "nuc mutations": "T9708C" }, +"mutations": { "nuc" : [ "T9708C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-10"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "201", +"branch_attrs": { + "labels": { "nuc mutations": "C16616T,C26885T,C27603T,C28887T" }, +"mutations": { "nuc" : [ "C16616T","C26885T","C27603T","C28887T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.280"}}, +"children":[ { +"name": "USA/FL-BPHL-1673/2020|MW166138.1|20-07-06", +"branch_attrs": { + "labels": { "nuc mutations": "C7267T,A25201G,C29719T,C29774T" }, +"mutations": { "nuc" : [ "C7267T","A25201G","C29719T","C29774T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0286/2020|MW240750.1|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "A7209G,C8950T,T17262C,T22645C,T29010C" }, +"mutations": { "nuc" : [ "A7209G","C8950T","T17262C","T22645C","T29010C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "202", +"branch_attrs": { + "labels": { "nuc mutations": "C14786T,G20578T" }, +"mutations": { "nuc" : [ "C14786T","G20578T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.13"}}, +"children":[ { +"name": "England/PHEC-1C872/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C2453T,C11102T" }, +"mutations": { "nuc" : [ "C2453T","C11102T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-130015/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "C6361T" }, +"mutations": { "nuc" : [ "C6361T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "203", +"branch_attrs": { + "labels": { "nuc mutations": "A716G" }, +"mutations": { "nuc" : [ "A716G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.274"}}, +"children":[ { +"name": "USA/UT-04888/2020|MW084559.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "G4960T,G21604T" }, +"mutations": { "nuc" : [ "G4960T","G21604T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-04282/2020|MW084509.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C10456T,G19816T,G25494T" }, +"mutations": { "nuc" : [ "C10456T","G19816T","G25494T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "204", +"branch_attrs": { + "labels": { "nuc mutations": "G10631T" }, +"mutations": { "nuc" : [ "G10631T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.479"}}, +"children":[ { +"name": "USA/MA_MGH_00136/2020|MT520439.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00486/2020|MT520279.1|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "G8131T" }, +"mutations": { "nuc" : [ "G8131T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "205", +"branch_attrs": { + "labels": { "nuc mutations": "C19884T" }, +"mutations": { "nuc" : [ "C19884T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.277"}}, +"children":[ { +"name": "Wales/PHWC-15DFD9/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T" }, +"mutations": { "nuc" : [ "G3969A","G14785A","C14786T","C17000T","G18960T","C28657T","C29614T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-14"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2AF12/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C26447A" }, +"mutations": { "nuc" : [ "C26447A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-06"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "206", +"branch_attrs": { + "labels": { "nuc mutations": "C875T,A10904G,G25249T,C28854T" }, +"mutations": { "nuc" : [ "C875T","A10904G","G25249T","C28854T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.480"}}, +"children":[ { +"name": "England/CAMC-B533A0/2020|20-11-08", +"branch_attrs": { + "labels": { "nuc mutations": "C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C" }, +"mutations": { "nuc" : [ "C1191A","T6989C","C14230T","A18366G","C20429T","A22842T","G25785T","T27328C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9781E9/2020|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1150T,C6525T,C13274T,C18555T,G19962C,C24378T" }, +"mutations": { "nuc" : [ "C1150T","C6525T","C13274T","C18555T","G19962C","C24378T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "207", +"branch_attrs": { + "labels": { "nuc mutations": "C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T" }, +"mutations": { "nuc" : [ "C539T","C5884T","C7834T","G8618A","C14322T","C15579T","G16912T","C23604A","G23948T","C25207T","T26038C","C26600T","C27970A","C28887T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.474"}}, +"children":[ { +"name": "321398|LR962930.1|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C22208T" }, +"mutations": { "nuc" : [ "C22208T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-13"}, "country": {"value": "321398|LR962930.1|20-10-13"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-B8053B/2020|20-11-14", +"branch_attrs": { + "labels": { "nuc mutations": "G22225T" }, +"mutations": { "nuc" : [ "G22225T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "208", +"branch_attrs": { + "labels": { "nuc mutations": "C6401T,C13458T,C20946T" }, +"mutations": { "nuc" : [ "C6401T","C13458T","C20946T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.273"}}, +"children":[ { +"name": "IHUCOVID-0441|LR794655.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "T2578C,C13105T" }, +"mutations": { "nuc" : [ "T2578C","C13105T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0441|LR794655.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IHUCOVID-0428|LR794641.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "T10480C" }, +"mutations": { "nuc" : [ "T10480C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0428|LR794641.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "209", +"branch_attrs": { + "labels": { "nuc mutations": "T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G" }, +"mutations": { "nuc" : [ "T2300C","G5425T","C10594T","C10755T","C14120T","C14407T","G16647T","A19674G","A20396G","C21811T","C25544T","C28770T","C28869T","A29143G" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.158"}}, +"children":[ { +"name": "USA/WA-S4490/2021|MW648014.1|21-01-21", +"branch_attrs": { + "labels": { "nuc mutations": "T17607C,G20396A" }, +"mutations": { "nuc" : [ "T17607C","G20396A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "21-01-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S3458/2020|MW494078.1|20-12-07", +"branch_attrs": { + "labels": { "nuc mutations": "C3535T" }, +"mutations": { "nuc" : [ "C3535T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "210", +"branch_attrs": { + "labels": { "nuc mutations": "T17838C,G26450T" }, +"mutations": { "nuc" : [ "T17838C","G26450T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.481"}}, +"children":[ { +"name": "hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "?"}, "country": {"value": "hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100363/2020|LR884411.1|20-03-20", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-20"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "211", +"branch_attrs": { + "labels": { "nuc mutations": "C18877T" }, +"mutations": { "nuc" : [ "C18877T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.440"}}, +"children":[ { +"name": "USA/FL-BPHL-0401/2020|MT757087.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "T18877C,C25904T" }, +"mutations": { "nuc" : [ "T18877C","C25904T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-14951/2020|MW565126.1|20-06-06", +"branch_attrs": { + "labels": { "nuc mutations": "T1683C,C22224T,C28367T" }, +"mutations": { "nuc" : [ "T1683C","C22224T","C28367T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "212", +"branch_attrs": { + "labels": { "nuc mutations": "C26735T" }, +"mutations": { "nuc" : [ "C26735T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "213", +"branch_attrs": { + "labels": { "nuc mutations": "C882T,C6990T" }, +"mutations": { "nuc" : [ "C882T","C6990T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.457"}}, +"children":[ { +"name": "England/CAMC-A3E658/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T" }, +"mutations": { "nuc" : [ "T3499C","C7279T","C7749T","C12513T","A14109G","C17156T","T20362C","C25710T","C26060T","T27216A","G28968T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A47DDF/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T" }, +"mutations": { "nuc" : [ "T511C","C7081T","C9907T","C12473T","T14610C","G20578T","G22801T","G28083T","C28887T","G28936T","G29742T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "214", +"branch_attrs": { + "labels": { "nuc mutations": "G24197T" }, +"mutations": { "nuc" : [ "G24197T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "215", +"branch_attrs": { + "labels": { "nuc mutations": "C21614T" }, +"mutations": { "nuc" : [ "C21614T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.466"}}, +"children":[ { +"name": "England/MILK-5642D2/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "T1834C,C11783A,C25413T" }, +"mutations": { "nuc" : [ "T1834C","C11783A","C25413T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1B3593/2020|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "A5829G,C6651T,C8326T,A11730G,T25732G" }, +"mutations": { "nuc" : [ "A5829G","C6651T","C8326T","A11730G","T25732G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "216", +"branch_attrs": { + "labels": { "nuc mutations": "T241C,A8821G,C15752T,T26066C" }, +"mutations": { "nuc" : [ "T241C","A8821G","C15752T","T26066C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.465"}}, +"children":[ { +"name": "England/SHEF-CDD62/2020|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C25665T,T28098C,G29254T" }, +"mutations": { "nuc" : [ "C25665T","T28098C","G29254T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-10B22B9/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "G3482A" }, +"mutations": { "nuc" : [ "G3482A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "217", +"branch_attrs": { + "labels": { "nuc mutations": "G1659T,C3884T,C20199T,C26139T,T27634C,G28975T" }, +"mutations": { "nuc" : [ "G1659T","C3884T","C20199T","C26139T","T27634C","G28975T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.523"}}, +"children":[ { +"name": "England/LOND-DC4E3/2020|20-11-04", +"branch_attrs": { + "labels": { "nuc mutations": "A11923G,G19009T,C20233T,T21976C,C26645T" }, +"mutations": { "nuc" : [ "A11923G","G19009T","C20233T","T21976C","C26645T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-11-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-99D3AC/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G6446T,C9811T,C21234A,C22713T,C29580T" }, +"mutations": { "nuc" : [ "G6446T","C9811T","C21234A","C22713T","C29580T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "218", +"branch_attrs": { + "labels": { "nuc mutations": "G28851T" }, +"mutations": { "nuc" : [ "G28851T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.454"}}, +"children":[ { +"name": "IND/GBRC-366a/2020|MT951170.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "C26058T" }, +"mutations": { "nuc" : [ "C26058T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-18"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC-392b/2020|MT954593.1|20-07-06", +"branch_attrs": { + "labels": { "nuc mutations": "C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T" }, +"mutations": { "nuc" : [ "C4048T","T4660C","C4890T","T8634C","G15906T","G28307A","G28975T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-06"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "219", +"branch_attrs": { + "labels": { "nuc mutations": "G5206T,C26885T,G28875T" }, +"mutations": { "nuc" : [ "G5206T","C26885T","G28875T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.467"}}, +"children":[ { +"name": "Switzerland/310517/2020|LR898824.1|20-10-08", +"branch_attrs": { + "labels": { "nuc mutations": "G370T,A8993G,C14763T,G25690A,C29370T" }, +"mutations": { "nuc" : [ "G370T","A8993G","C14763T","G25690A","C29370T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-08"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9AB1A1/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T" }, +"mutations": { "nuc" : [ "G5629T","C6636T","G9928T","G20275T","C20544A","G20940T","C25553T","C27431T","G28321T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "220", +"branch_attrs": { + "labels": { "nuc mutations": "C22444T" }, +"mutations": { "nuc" : [ "C22444T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.468"}}, +"children":[ { +"name": "SAU/596/2020|MT755893.1|20-02-18", +"branch_attrs": { + "labels": { "nuc mutations": "A23503G" }, +"mutations": { "nuc" : [ "A23503G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-02-18"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BHR/920265546_S18_L001/2020|MW228055.1|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T,G28960T" }, +"mutations": { "nuc" : [ "G11417T","G28960T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-21"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "221", +"branch_attrs": { + "labels": { "nuc mutations": "C593T,T3118C,T10200C,A12547G,C21772T,C28854T" }, +"mutations": { "nuc" : [ "C593T","T3118C","T10200C","A12547G","C21772T","C28854T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.20"}}, +"children":[ { +"name": "Scotland/QEUH-A9E7BD/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "A3120C" }, +"mutations": { "nuc" : [ "A3120C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-20"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB7778/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "C28045T" }, +"mutations": { "nuc" : [ "C28045T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-16"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "222", +"branch_attrs": { + "labels": { "nuc mutations": "T181C,C8664T,C12525T,C15120T,G28975T" }, +"mutations": { "nuc" : [ "T181C","C8664T","C12525T","C15120T","G28975T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.460"}}, +"children":[ { +"name": "England/ALDP-B75065/2020|20-11-12", +"branch_attrs": { + "labels": { "nuc mutations": "G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A" }, +"mutations": { "nuc" : [ "G3080A","C3587T","C8655T","C18555T","G22205C","G22487C","G27281T","G27420A","C28214A" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-AD4AFE/2020|20-10-27", +"branch_attrs": { + "labels": { "nuc mutations": "A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T" }, +"mutations": { "nuc" : [ "A3180G","C9430T","A12130G","G15193T","T20982C","C25904T","C26571T","G27165T","G28280T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-27"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "223", +"branch_attrs": { + "labels": { "nuc mutations": "C22444T,C28854T" }, +"mutations": { "nuc" : [ "C22444T","C28854T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36"}}, +"children":[ { +"name": "SAU/578/2020|MT755891.1|20-02-17", +"branch_attrs": { + "labels": { "nuc mutations": "C27527T,C29421T" }, +"mutations": { "nuc" : [ "C27527T","C29421T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-02-17"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB6640/2020|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "T838C,G1729A,C1973T,C2919T,C23191T,T23605C" }, +"mutations": { "nuc" : [ "T838C","G1729A","C1973T","C2919T","C23191T","T23605C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "224", +"branch_attrs": { + "labels": { "nuc mutations": "T1947C" }, +"mutations": { "nuc" : [ "T1947C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "225", +"branch_attrs": { + "labels": { "nuc mutations": "G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T" }, +"mutations": { "nuc" : [ "G2659T","G5008T","G19549T","G22918T","C25349A","G25947C","G26062T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.1"}}, +"children":[ { +"name": "England/CAMC-A65DDB/2020|20-10-11", +"branch_attrs": { + "labels": { "nuc mutations": "T22918G" }, +"mutations": { "nuc" : [ "T22918G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-AAF5A0/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C4672T,C8605T,C11003T" }, +"mutations": { "nuc" : [ "C4672T","C8605T","C11003T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "226", +"branch_attrs": { + "labels": { "nuc mutations": "T7292C,T8410C,C10833T,C11572T,C16293T,T23986C" }, +"mutations": { "nuc" : [ "T7292C","T8410C","C10833T","C11572T","C16293T","T23986C" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.28"}}, +"children":[ { +"name": "England/MILK-A192C8/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "A538G,A1098C,C2910T,G9092A" }, +"mutations": { "nuc" : [ "A538G","A1098C","C2910T","G9092A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9F3FDD/2020|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "227", +"branch_attrs": { + "labels": { "nuc mutations": "C7528T,C29555T" }, +"mutations": { "nuc" : [ "C7528T","C29555T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.17"}}, +"children":[ { +"name": "England/MILK-ABBF2B/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C10474T,C13536T" }, +"mutations": { "nuc" : [ "C10474T","C13536T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96A85E/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "T23986C" }, +"mutations": { "nuc" : [ "T23986C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "228", +"branch_attrs": { + "labels": { "nuc mutations": "G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T" }, +"mutations": { "nuc" : [ "G922A","G3431T","T5653C","G5950A","C7504T","T24175C","C26060T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.27"}}, +"children":[ { +"name": "HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "C14724T" }, +"mutations": { "nuc" : [ "C14724T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-06"}, "country": {"value": "HongKong"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "A6391G" }, +"mutations": { "nuc" : [ "A6391G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-06"}, "country": {"value": "HongKong"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "229", +"branch_attrs": { + "labels": { "nuc mutations": "C2836T,G21724T" }, +"mutations": { "nuc" : [ "C2836T","G21724T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "230", +"branch_attrs": { + "labels": { "nuc mutations": "C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T" }, +"mutations": { "nuc" : [ "C1122T","T2836C","T4057C","G6077T","A10323G","G13858T","C27092T","C27434T","G28975T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.21"}}, +"children":[ { +"name": "England/PHEC-149F0D/2020|20-11-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-11-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-BE717A/2020|20-11-29", +"branch_attrs": { + "labels": { "nuc mutations": "C11003T,C26404T,G26754A" }, +"mutations": { "nuc" : [ "C11003T","C26404T","G26754A" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-11-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "231", +"branch_attrs": { + "labels": { "nuc mutations": "G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T" }, +"mutations": { "nuc" : [ "G61T","C913T","C1541T","C11259T","C25000T","G26144A","G26849T","C29358T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.26"}}, +"children":[ { +"name": "CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04", +"branch_attrs": { + "labels": { "nuc mutations": "C9745T,C10440T" }, +"mutations": { "nuc" : [ "C9745T","C10440T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-04"}, "country": {"value": "CAN"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-BEAF22/2020|20-12-04", +"branch_attrs": { + "labels": { "nuc mutations": "G4105T,C4754T,C5730T,C21597T,T21841A" }, +"mutations": { "nuc" : [ "G4105T","C4754T","C5730T","C21597T","T21841A" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "232", +"branch_attrs": { + "labels": { "nuc mutations": "C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C" }, +"mutations": { "nuc" : [ "C6312T","C12513T","G14122T","A20559G","C23127T","T26876C","C28311T","A28900C" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.23"}}, +"children":[ { +"name": "England/QEUH-9B703C/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C25466A,C25614T,A29101G" }, +"mutations": { "nuc" : [ "C25466A","C25614T","A29101G" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-970CE0/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "G26389T" }, +"mutations": { "nuc" : [ "G26389T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "233", +"branch_attrs": { + "labels": { "nuc mutations": "G25494T" }, +"mutations": { "nuc" : [ "G25494T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.16"}}, +"children":[ { +"name": "BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C1593T,C2940T,C10456T,G23611A" }, +"mutations": { "nuc" : [ "C1593T","C2940T","C10456T","G23611A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-26"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "T15585A,C15613T,A24062G,T27484C" }, +"mutations": { "nuc" : [ "T15585A","C15613T","A24062G","T27484C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-14"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "234", +"branch_attrs": { + "labels": { "nuc mutations": "C2523T,G3994A,C5730T,C9924T,C11109T,C24138A" }, +"mutations": { "nuc" : [ "C2523T","G3994A","C5730T","C9924T","C11109T","C24138A" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.9"}}, +"children":[ { +"name": "England/CAMC-1263B05/2021|21-02-10", +"branch_attrs": { + "labels": { "nuc mutations": "G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A" }, +"mutations": { "nuc" : [ "G4300T","A5146G","T5347C","T6103C","A8133G","C11379T","G15543T","G19656A","T22345C","C27849T","G29212A" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-02-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AD3822/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "G2035T,A2805G,C18555T,C21365T" }, +"mutations": { "nuc" : [ "G2035T","A2805G","C18555T","C21365T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "235", +"branch_attrs": { + "labels": { "nuc mutations": "A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C" }, +"mutations": { "nuc" : [ "A749G","C2113T","C6268A","C6701T","C7318T","C9438T","C14724T","A17637G","C20555T","C21660A","G22201T","C22480A","G23522C","A25856C" ] } + }, +"node_attrs": { + "div":23, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.24"}}, +"children":[ { +"name": "England/SHEF-10C9BD2/2020|20-12-20", +"branch_attrs": { + "labels": { "nuc mutations": "C15081T,A19963G" }, +"mutations": { "nuc" : [ "C15081T","A19963G" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "20-12-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-10CC3AA/2020|20-12-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1420T" }, +"mutations": { "nuc" : [ "C1420T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "236", +"branch_attrs": { + "labels": { "nuc mutations": "C11514T,C13168T,G24764T" }, +"mutations": { "nuc" : [ "C11514T","C13168T","G24764T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.12"}}, +"children":[ { +"name": "England/MILK-9A94E6/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C7764T,C27059T,G27806T,C28087T" }, +"mutations": { "nuc" : [ "C7764T","C27059T","G27806T","C28087T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-566C5A/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "237", +"branch_attrs": { + "labels": { "nuc mutations": "C2898T,C6681T,C7728T,G12191T,T16993C,G25311T" }, +"mutations": { "nuc" : [ "C2898T","C6681T","C7728T","G12191T","T16993C","G25311T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.36.10"}}, +"children":[ { +"name": "England/CAMC-C2CDFC/2020|20-12-07", +"branch_attrs": { + "labels": { "nuc mutations": "T3366C" }, +"mutations": { "nuc" : [ "T3366C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-12-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-CAA0EE/2020|20-12-18", +"branch_attrs": { + "labels": { "nuc mutations": "C28411T" }, +"mutations": { "nuc" : [ "C28411T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-12-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "238", +"branch_attrs": { + "labels": { "nuc mutations": "C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A" }, +"mutations": { "nuc" : [ "C4543T","G9526T","C11497T","G15766T","A16889G","G17019T","G22992A","C25710T","T26876C","G28975C","G29399A" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.160"}}, +"children":[ { +"name": "England/PHEC-1491AD/2020|20-10-17", +"branch_attrs": { + "labels": { "nuc mutations": "G4006T,T18877C,T25563G" }, +"mutations": { "nuc" : [ "G4006T","T18877C","T25563G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "239", +"branch_attrs": { + "labels": { "nuc mutations": "G13993T" }, +"mutations": { "nuc" : [ "G13993T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-A1BC04/2020|20-10-03", +"branch_attrs": { + "labels": { "nuc mutations": "G204T,T961C,G6288T,T9651G,T13880C,C16163T,A22992G,C27263T,C28975G,A29399G" }, +"mutations": { "nuc" : [ "G204T","T961C","G6288T","T9651G","T13880C","C16163T","A22992G","C27263T","C28975G","A29399G" ] } + }, +"node_attrs": { "div": 29, "date": {"value": "20-10-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "240", +"branch_attrs": { + "labels": { "nuc mutations": "G5629T" }, +"mutations": { "nuc" : [ "G5629T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": "20A.EU2"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "241", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-97356A/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C15720T" }, +"mutations": { "nuc" : [ "C15720T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-08-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "242", +"branch_attrs": { + "labels": { "nuc mutations": "C556T,C23525T" }, +"mutations": { "nuc" : [ "C556T","C23525T" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.160.7"}}, +"children":[ { +"name": "England/CAMC-A649C9/2020|20-10-10", +"branch_attrs": { + "labels": { "nuc mutations": "C6813T,C13620T" }, +"mutations": { "nuc" : [ "C6813T","C13620T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-10-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B04890/2020|20-10-24", +"branch_attrs": { + "labels": { "nuc mutations": "G8371A,C23679T" }, +"mutations": { "nuc" : [ "G8371A","C23679T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-10-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/MILK-A230C1/2020|20-10-03", +"branch_attrs": { + "labels": { "nuc mutations": "A2175G" }, +"mutations": { "nuc" : [ "A2175G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "243", +"branch_attrs": { + "labels": { "nuc mutations": "C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T" }, +"mutations": { "nuc" : [ "C1427T","A2285T","G5329A","G7328T","C10369T","C12513T","C14120T","C17676T","C19955T","A20916G","G23593T","G26056T","A27107T","T27384C","C28760A","C29642T" ] } + }, +"node_attrs": { + "div":23, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.470"}}, +"children":[ { +"name": "England/TFCI-26FA9B7/2020|20-12-31", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B94ACC/2020|20-11-13", +"branch_attrs": { + "labels": { "nuc mutations": "C15237T" }, +"mutations": { "nuc" : [ "C15237T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-11-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "244", +"branch_attrs": { + "labels": { "nuc mutations": "T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T" }, +"mutations": { "nuc" : [ "T790C","A12075G","G19542T","G19816T","A21137G","C23604A","T25705C","C28866T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.469"}}, +"children":[ { +"name": "England/MILK-EB78C6/2021|21-01-02", +"branch_attrs": { + "labels": { "nuc mutations": "C6310T,C10369T" }, +"mutations": { "nuc" : [ "C6310T","C10369T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "21-01-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-C44338/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "T1908C,C2947T,C17550T,C29509T" }, +"mutations": { "nuc" : [ "T1908C","C2947T","C17550T","C29509T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "245", +"branch_attrs": { + "labels": { "nuc mutations": "C16915T,T24202C,G28899T" }, +"mutations": { "nuc" : [ "C16915T","T24202C","G28899T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "246", +"branch_attrs": { + "labels": { "nuc mutations": "G21204T,G29692T" }, +"mutations": { "nuc" : [ "G21204T","G29692T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.471"}}, +"children":[ { +"name": "England/QEUH-96A29C/2020|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "C15654T" }, +"mutations": { "nuc" : [ "C15654T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9EA6D4/2020|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "C8240T,C8357T" }, +"mutations": { "nuc" : [ "C8240T","C8357T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "247", +"branch_attrs": { + "labels": { "nuc mutations": "C26534T" }, +"mutations": { "nuc" : [ "C26534T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.472"}}, +"children":[ { +"name": "England/MILK-A6AEC4/2020|20-10-09", +"branch_attrs": { + "labels": { "nuc mutations": "C2910T,C16393T,A19387G,G20491A,C24378T" }, +"mutations": { "nuc" : [ "C2910T","C16393T","A19387G","G20491A","C24378T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B889A0/2020|20-11-14", +"branch_attrs": { + "labels": { "nuc mutations": "A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T" }, +"mutations": { "nuc" : [ "A169G","C5192T","C7224T","C8240T","C11962T","C18555T","C24916T","G25012T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-11-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "248", +"branch_attrs": { + "labels": { "nuc mutations": "C3811T,A6608G,A28911T" }, +"mutations": { "nuc" : [ "C3811T","A6608G","A28911T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.462"}}, +"children":[ { +"name": "England/ALDP-EEACDD/2021|21-01-03", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T" }, +"mutations": { "nuc" : [ "C1912T","C11758T","C19862T","C25511T","T25911G","G28027T","A29086T","G29402T","C29541T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "21-01-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LIVE-DDCD09/2021|21-01-02", +"branch_attrs": { + "labels": { "nuc mutations": "A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T" }, +"mutations": { "nuc" : [ "A901T","C1377T","A4414G","C6285T","A7483G","G7936T","C9430T","C15240T","C18183T","C21772T","G23593C","T25306C","G25740T","G26951T","C28087T","C28453T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "249", +"branch_attrs": { + "labels": { "nuc mutations": "G28086T" }, +"mutations": { "nuc" : [ "G28086T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.442"}}, +"children":[ { +"name": "USA/VA-DCLS-0229/2020|MT558657.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "C10582T,C11747T,G25459T,G25555T" }, +"mutations": { "nuc" : [ "C10582T","C11747T","G25459T","G25555T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C27416T" }, +"mutations": { "nuc" : [ "C27416T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "250", +"branch_attrs": { + "labels": { "nuc mutations": "T8296C,C12076T,G28690T,C28854T" }, +"mutations": { "nuc" : [ "T8296C","C12076T","G28690T","C28854T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.441"}}, +"children":[ { +"name": "Scotland/CVR3970/2020|20-08-22", +"branch_attrs": { + "labels": { "nuc mutations": "G19846A,G20060T,C22227T,G22332T" }, +"mutations": { "nuc" : [ "G19846A","G20060T","C22227T","G22332T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A7D5AB/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1929T,C3777T,G8102T,C26165T,C26681T,G28916A" }, +"mutations": { "nuc" : [ "C1929T","C3777T","G8102T","C26165T","C26681T","G28916A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "251", +"branch_attrs": { + "labels": { "nuc mutations": "A6512C" }, +"mutations": { "nuc" : [ "A6512C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.112"}}, +"children":[ { +"name": "USA/UT-01683/2020|MT536956.1|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "G370T,A3841T" }, +"mutations": { "nuc" : [ "G370T","A3841T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-03892/2020|MT711875.1|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C683T" }, +"mutations": { "nuc" : [ "C683T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "252", +"branch_attrs": { + "labels": { "nuc mutations": "G10793T" }, +"mutations": { "nuc" : [ "G10793T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.163"}}, +"children":[ { +"name": "USA/CA-CZB-1414/2020|MT628125.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C29311T" }, +"mutations": { "nuc" : [ "C29311T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11962/2020|MW276532.1|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "G21724T,G25186A" }, +"mutations": { "nuc" : [ "G21724T","G25186A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "253", +"branch_attrs": { + "labels": { "nuc mutations": "A2161G,C16376T" }, +"mutations": { "nuc" : [ "A2161G","C16376T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.124"}}, +"children":[ { +"name": "USA/WA-S1281/2020|MT821642.1|20-05-12", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T" }, +"mutations": { "nuc" : [ "G11417T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2367/2020|MT831837.1|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "C5758T,T18453C,A28901G" }, +"mutations": { "nuc" : [ "C5758T","T18453C","A28901G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "254", +"branch_attrs": { + "labels": { "nuc mutations": "T1918C,C6402T,C8320T,C12171T" }, +"mutations": { "nuc" : [ "T1918C","C6402T","C8320T","C12171T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.439"}}, +"children":[ { +"name": "USA/VA-DCLS-0804/2020|MT925987.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G28079T,G29540A" }, +"mutations": { "nuc" : [ "G28079T","G29540A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1454/2020|MW067779.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "G9190T,A11782G,G21893A,G26937A" }, +"mutations": { "nuc" : [ "G9190T","A11782G","G21893A","G26937A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "255", +"branch_attrs": { + "labels": { "nuc mutations": "C10507T" }, +"mutations": { "nuc" : [ "C10507T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.111"}}, +"children":[ { +"name": "England/NORW-E7EBA/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A476G,A16638G,G17893T" }, +"mutations": { "nuc" : [ "A476G","A16638G","G17893T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-1044/2020|MW065007.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1403T,G7798T" }, +"mutations": { "nuc" : [ "C1403T","G7798T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "256", +"branch_attrs": { + "labels": { "nuc mutations": "C9195T,T15354C" }, +"mutations": { "nuc" : [ "C9195T","T15354C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.162"}}, +"children":[ { +"name": "USA/WI-UW-413/2020|MT772562.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C5884T,T9195C" }, +"mutations": { "nuc" : [ "C5884T","T9195C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-288/2020|MT706396.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C21855T" }, +"mutations": { "nuc" : [ "C21855T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "257", +"branch_attrs": { + "labels": { "nuc mutations": "C1288T,G1298A,G25445T,G28851T,G29254T" }, +"mutations": { "nuc" : [ "C1288T","G1298A","G25445T","G28851T","G29254T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.385"}}, +"children":[ { +"name": "USA/GA-CDC-5095/2020|MW053297.1|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C7162T,G29745A" }, +"mutations": { "nuc" : [ "C7162T","G29745A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1097/2020|MT956684.1|20-08-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "258", +"branch_attrs": { + "labels": { "nuc mutations": "A1154G,G29474T" }, +"mutations": { "nuc" : [ "A1154G","G29474T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.438"}}, +"children":[ { +"name": "England/MILK-99DB3B/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "T5785A,G15705A,G25687T,G27598T" }, +"mutations": { "nuc" : [ "T5785A","G15705A","G25687T","G27598T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-5D3DEC/2020|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "259", +"branch_attrs": { + "labels": { "nuc mutations": "A1096G,G14874T" }, +"mutations": { "nuc" : [ "A1096G","G14874T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.245"}}, +"children":[ { +"name": "USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "C1420T" }, +"mutations": { "nuc" : [ "C1420T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "G15982T,G24914T" }, +"mutations": { "nuc" : [ "G15982T","G24914T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "260", +"branch_attrs": { + "labels": { "nuc mutations": "C2113T,C7765T,C17690T" }, +"mutations": { "nuc" : [ "C2113T","C7765T","C17690T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "261", +"branch_attrs": { + "labels": { "nuc mutations": "T2113C,G9190T,G28851C" }, +"mutations": { "nuc" : [ "T2113C","G9190T","G28851C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.5"}}, +"children":[ { +"name": "England/MILK-ACEE55/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T" }, +"mutations": { "nuc" : [ "C1812T","G22992T","T23599A","C24844T","G25687T","G28307T","C28708T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/260079/2020|LR882418.1|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "C842T,T1359C,C10702T,C11109T,C25886T,C27429T" }, +"mutations": { "nuc" : [ "C842T","T1359C","C10702T","C11109T","C25886T","C27429T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-25"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "262", +"branch_attrs": { + "labels": { "nuc mutations": "T24923C" }, +"mutations": { "nuc" : [ "T24923C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.1"}}, +"children":[ { +"name": "Scotland/EDB6391/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C12194T,C13968T,C14189T" }, +"mutations": { "nuc" : [ "C12194T","C13968T","C14189T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB5108/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "263", +"branch_attrs": { + "labels": { "nuc mutations": "T5941C,A22438T" }, +"mutations": { "nuc" : [ "T5941C","A22438T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.2"}}, +"children":[ { +"name": "USA/VA-DCLS-0489/2020|MT951943.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "G21600T,T27672C" }, +"mutations": { "nuc" : [ "G21600T","T27672C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1388/2020|MW067734.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G1659A,A4838G,C5548T,C14220T,C14724T" }, +"mutations": { "nuc" : [ "G1659A","A4838G","C5548T","C14220T","C14724T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "264", +"branch_attrs": { + "labels": { "nuc mutations": "C346T,A28959G" }, +"mutations": { "nuc" : [ "C346T","A28959G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.9.4"}}, +"children":[ { +"name": "Scotland/QEUH-961BB8/2020|20-08-02", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T,G23782T,A28336G" }, +"mutations": { "nuc" : [ "C9430T","G23782T","A28336G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-02"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/250091/2020|LR881897.1|20-08-19", +"branch_attrs": { + "labels": { "nuc mutations": "G11521T,T16059C,C23896T,T25078C,T27919C" }, +"mutations": { "nuc" : [ "G11521T","T16059C","C23896T","T25078C","T27919C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-19"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "265", +"branch_attrs": { + "labels": { "nuc mutations": "A25524G,C26801T,G29449T" }, +"mutations": { "nuc" : [ "A25524G","C26801T","G29449T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.436"}}, +"children":[ { +"name": "USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "C10741T" }, +"mutations": { "nuc" : [ "C10741T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "266", +"branch_attrs": { + "labels": { "nuc mutations": "A11246T,A23949G,C29013T" }, +"mutations": { "nuc" : [ "A11246T","A23949G","C29013T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.443"}}, +"children":[ { +"name": "USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C9967T" }, +"mutations": { "nuc" : [ "C9967T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-QDX-3305/2020|MW522496.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "C5392T,C18654T,C19983T,G25177T" }, +"mutations": { "nuc" : [ "C5392T","C18654T","C19983T","G25177T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "267", +"branch_attrs": { + "labels": { "nuc mutations": "T3011C,G22205T,T27869C,T28853G" }, +"mutations": { "nuc" : [ "T3011C","G22205T","T27869C","T28853G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.216"}}, +"children":[ { +"name": "USA/WI-UW-1105/2020|MT929055.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C1824T,C19718T,C25919T,C29149T" }, +"mutations": { "nuc" : [ "C1824T","C19718T","C25919T","C29149T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/RML-22/2020|MW221270.1|20-08-30", +"branch_attrs": { + "labels": { "nuc mutations": "T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T" }, +"mutations": { "nuc" : [ "T1847C","T5119C","C5585A","C6449T","C13059T","C18928T","C26256T","G28079T","G29755T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "268", +"branch_attrs": { + "labels": { "nuc mutations": "C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T" }, +"mutations": { "nuc" : [ "C3602T","C6941T","C15324T","C21855T","A25505G","G25906C","G25996T","C28651T","C28869T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.221"}}, +"children":[ { +"name": "England/MILK-9750EF/2020|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "G2407C,C2902T" }, +"mutations": { "nuc" : [ "G2407C","C2902T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "269", +"branch_attrs": { + "labels": { "nuc mutations": "G4442T,C6525T,A16044T" }, +"mutations": { "nuc" : [ "G4442T","C6525T","A16044T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.221.1"}}, +"children":[ { +"name": "270", +"branch_attrs": { + "labels": { "nuc mutations": "G2407T,G11761T" }, +"mutations": { "nuc" : [ "G2407T","G11761T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-9C3D45/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C11494T,C20468T" }, +"mutations": { "nuc" : [ "C11494T","C20468T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9C7EA8/2020|20-09-11", +"branch_attrs": { + "labels": { "nuc mutations": "T2924C" }, +"mutations": { "nuc" : [ "T2924C" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/MILK-9A8AB8/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C222T" }, +"mutations": { "nuc" : [ "C222T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "271", +"branch_attrs": { + "labels": { "nuc mutations": "G4504T,T8983G,G11761T,T12655C,C26461T,A28133T" }, +"mutations": { "nuc" : [ "G4504T","T8983G","G11761T","T12655C","C26461T","A28133T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.221.2"}}, +"children":[ { +"name": "England/CAMC-106415F/2021|21-01-15", +"branch_attrs": { + "labels": { "nuc mutations": "C12116T,C12459T,A23503T,A23989T,C24023T,G28899A" }, +"mutations": { "nuc" : [ "C12116T","C12459T","A23503T","A23989T","C24023T","G28899A" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "21-01-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-C470F2/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "C6794T,C8814T,C13452T" }, +"mutations": { "nuc" : [ "C6794T","C8814T","C13452T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "272", +"branch_attrs": { + "labels": { "nuc mutations": "C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T" }, +"mutations": { "nuc" : [ "C1498T","G2659A","C6285T","T8593C","C14407T","C18171T","A20724G","A21717G","C21762T","G23012A","G23593C","T24224C","C24748T","C26305T","T26767C","C28308G","A28699G","C28887T","G29543T" ] } + }, +"node_attrs": { + "div":23, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.525"}}, +"children":[ { +"name": "BHR/740704818/2021|MW661071.1|21-01-26", +"branch_attrs": { + "labels": { "nuc mutations": "C1593T,T16138C,C25667T" }, +"mutations": { "nuc" : [ "C1593T","T16138C","C25667T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-26"}, "country": {"value": "BHR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-E93C6A/2021|21-01-04", +"branch_attrs": { + "labels": { "nuc mutations": "A1807G,C9565T,G18670A,C22480T,T23176C,G27916T" }, +"mutations": { "nuc" : [ "A1807G","C9565T","G18670A","C22480T","T23176C","G27916T" ] } + }, +"node_attrs": { "div": 29, "date": {"value": "21-01-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "273", +"branch_attrs": { + "labels": { "nuc mutations": "C1545T,C22879A" }, +"mutations": { "nuc" : [ "C1545T","C22879A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.222"}}, +"children":[ { +"name": "Scotland/CVR2931/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "T1545C,C8334T,C19089T" }, +"mutations": { "nuc" : [ "T1545C","C8334T","C19089T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/GCVR-172150/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-30"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "274", +"branch_attrs": { + "labels": { "nuc mutations": "A11782G,G22203T" }, +"mutations": { "nuc" : [ "A11782G","G22203T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.379"}}, +"children":[ { +"name": "England/BRIS-124885/2020|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "T2815C,T6892C" }, +"mutations": { "nuc" : [ "T2815C","T6892C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-122C4F/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G27754T" }, +"mutations": { "nuc" : [ "G27754T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "275", +"branch_attrs": { + "labels": { "nuc mutations": "A20268G" }, +"mutations": { "nuc" : [ "A20268G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.182"}}, +"children":[ { +"name": "USA/RI-CDC-0556/2020|MT304488.1|20-03-01", +"branch_attrs": { + "labels": { "nuc mutations": "C27684T" }, +"mutations": { "nuc" : [ "C27684T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100198/2020|LR884312.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "G28881A" }, +"mutations": { "nuc" : [ "G28881A" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-17"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "276", +"branch_attrs": { + "labels": { "nuc mutations": "G15732T,T19143C" }, +"mutations": { "nuc" : [ "G15732T","T19143C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.415"}}, +"children":[ { +"name": "USA/WI-UW-1046/2020|MT928999.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T" }, +"mutations": { "nuc" : [ "G2549A","C9448T","C10815T","A13712G","C14599T","C19806T","C29614T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0409/2020|MW127871.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T" }, +"mutations": { "nuc" : [ "G669T","C3096T","A11714G","C20823T","C22286T","A24014G","G29332T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "277", +"branch_attrs": { + "labels": { "nuc mutations": "C28854T" }, +"mutations": { "nuc" : [ "C28854T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "278", +"branch_attrs": { + "labels": { "nuc mutations": "G27987T" }, +"mutations": { "nuc" : [ "G27987T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.232"}}, +"children":[ { +"name": "Scotland/EDB3341/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-08"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB6880/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "G6461T,C17550T,C24865T" }, +"mutations": { "nuc" : [ "G6461T","C17550T","C24865T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-30"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "279", +"branch_attrs": { + "labels": { "nuc mutations": "T24076C" }, +"mutations": { "nuc" : [ "T24076C" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.243"}}, +"children":[ { +"name": "USA/CA-CDC-4728/2020|MW001919.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "G7393T,C27804T" }, +"mutations": { "nuc" : [ "G7393T","C27804T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "C390T,A9984C,A15250G,G15253A,G18412T" }, +"mutations": { "nuc" : [ "C390T","A9984C","A15250G","G15253A","G18412T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "280", +"branch_attrs": { + "labels": { "nuc mutations": "C18486T,T22162C" }, +"mutations": { "nuc" : [ "C18486T","T22162C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.240"}}, +"children":[ { +"name": "England/ALDP-B252AA/2020|20-11-04", +"branch_attrs": { + "labels": { "nuc mutations": "C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T" }, +"mutations": { "nuc" : [ "C147T","C934T","C2536T","G3496T","C4331T","C6738T","A13712G","T14769C","G17790T","C20259T","G21753T","C27903T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-11-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11549/2020|MW276537.1|20-07-12", +"branch_attrs": { + "labels": { "nuc mutations": "C4898T,A11934T,G23868T" }, +"mutations": { "nuc" : [ "C4898T","A11934T","G23868T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "281", +"branch_attrs": { + "labels": { "nuc mutations": "G16741A" }, +"mutations": { "nuc" : [ "G16741A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.239"}}, +"children":[ { +"name": "USA/CA-CZB-11793/2020|MW276612.1|20-09-22", +"branch_attrs": { + "labels": { "nuc mutations": "G3259T,C7720T,G11146T,G22992T,G24781T,C25584T" }, +"mutations": { "nuc" : [ "G3259T","C7720T","G11146T","G22992T","G24781T","C25584T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2502/2020|MW035993.1|20-05-25", +"branch_attrs": { + "labels": { "nuc mutations": "C1060T,C8334T,T21000C" }, +"mutations": { "nuc" : [ "C1060T","C8334T","T21000C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "282", +"branch_attrs": { + "labels": { "nuc mutations": "C4633T,T14643C,C22482T" }, +"mutations": { "nuc" : [ "C4633T","T14643C","C22482T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.402"}}, +"children":[ { +"name": "USA/CA-CZB-11521/2020|MW276549.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "G27506T" }, +"mutations": { "nuc" : [ "G27506T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-11513/2020|MW276567.1|20-08-02", +"branch_attrs": { + "labels": { "nuc mutations": "G23126T,G25775T" }, +"mutations": { "nuc" : [ "G23126T","G25775T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "283", +"branch_attrs": { + "labels": { "nuc mutations": "G1135T" }, +"mutations": { "nuc" : [ "G1135T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.397"}}, +"children":[ { +"name": "USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "G1148T,G28109T" }, +"mutations": { "nuc" : [ "G1148T","G28109T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0227/2020|MW157244.1|20-09-23", +"branch_attrs": { + "labels": { "nuc mutations": "G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T" }, +"mutations": { "nuc" : [ "G199T","C1288T","C3096T","A3867T","C8208T","C10641T","C21952T","A25050T","C28310T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "284", +"branch_attrs": { + "labels": { "nuc mutations": "G7798T" }, +"mutations": { "nuc" : [ "G7798T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.229"}}, +"children":[ { +"name": "England/LOND-D5444/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C12789T" }, +"mutations": { "nuc" : [ "C12789T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3238/2020|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "G22992T" }, +"mutations": { "nuc" : [ "G22992T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-26"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "285", +"branch_attrs": { + "labels": { "nuc mutations": "G19969A" }, +"mutations": { "nuc" : [ "G19969A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.400"}}, +"children":[ { +"name": "USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T" }, +"mutations": { "nuc" : [ "C1627T","C9430T","C14925T","C24031T","G28001C","T28251G","A28254C","C28744T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3893/2020|MW134296.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "A4143G,C6627T,C15960T,T19341C,A27834T,C28724T" }, +"mutations": { "nuc" : [ "A4143G","C6627T","C15960T","T19341C","A27834T","C28724T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "286", +"branch_attrs": { + "labels": { "nuc mutations": "C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T" }, +"mutations": { "nuc" : [ "C593T","C2445T","C5301T","C5365T","A6391G","A10399G","G11266A","C22120T","G28086T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.421"}}, +"children":[ { +"name": "USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22", +"branch_attrs": { + "labels": { "nuc mutations": "C16362T" }, +"mutations": { "nuc" : [ "C16362T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "G25775T" }, +"mutations": { "nuc" : [ "G25775T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "287", +"branch_attrs": { + "labels": { "nuc mutations": "T5507A" }, +"mutations": { "nuc" : [ "T5507A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.235"}}, +"children":[ { +"name": "Scotland/EDB3662/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "A19855G" }, +"mutations": { "nuc" : [ "A19855G" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6FB8FB/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C335T,C9024T,G15906T,C21614T" }, +"mutations": { "nuc" : [ "C335T","C9024T","G15906T","C21614T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "288", +"branch_attrs": { + "labels": { "nuc mutations": "C4596A,G19086T" }, +"mutations": { "nuc" : [ "C4596A","G19086T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.403"}}, +"children":[ { +"name": "USA/CA-CDC-4704/2020|MW001903.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C23114T" }, +"mutations": { "nuc" : [ "C23114T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-4000/2020|MW134394.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "G9111A,C13517T,C17639T,A20649T" }, +"mutations": { "nuc" : [ "G9111A","C13517T","C17639T","A20649T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "289", +"branch_attrs": { + "labels": { "nuc mutations": "C8683T" }, +"mutations": { "nuc" : [ "C8683T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.238"}}, +"children":[ { +"name": "England/LIVE-A00F3/2020|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "C6336T,C12672T,C13335T,G26173T" }, +"mutations": { "nuc" : [ "C6336T","C12672T","C13335T","G26173T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-544733/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C7564T,C12400T" }, +"mutations": { "nuc" : [ "C7564T","C12400T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "290", +"branch_attrs": { + "labels": { "nuc mutations": "C11575T" }, +"mutations": { "nuc" : [ "C11575T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.241"}}, +"children":[ { +"name": "USA/TX-DSHS-1179/2020|MW246020.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "G6884A,C13487T,A16840C,C19029T,T22222C,C28115T" }, +"mutations": { "nuc" : [ "G6884A","C13487T","A16840C","C19029T","T22222C","C28115T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MN-MDH-2008/2020|MW279332.1|20-09-29", +"branch_attrs": { + "labels": { "nuc mutations": "A1291G,A2342G,A7291G,T7645C,C7768T" }, +"mutations": { "nuc" : [ "A1291G","A2342G","A7291G","T7645C","C7768T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "291", +"branch_attrs": { + "labels": { "nuc mutations": "C1714T" }, +"mutations": { "nuc" : [ "C1714T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.231"}}, +"children":[ { +"name": "England/MILK-654007/2020|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C" }, +"mutations": { "nuc" : [ "C841T","C2048T","T5092C","C5724T","C8092T","A13516G","G18816T","G19999T","C20451T","A27675C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/OXON-B1781/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "C27213T" }, +"mutations": { "nuc" : [ "C27213T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "292", +"branch_attrs": { + "labels": { "nuc mutations": "C28887T" }, +"mutations": { "nuc" : [ "C28887T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.399"}}, +"children":[ { +"name": "USA/CA-CZB-3624/2020|MW134177.1|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "G1843A,C3828T,C12880T,C19386T,G25252T" }, +"mutations": { "nuc" : [ "G1843A","C3828T","C12880T","C19386T","G25252T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-4040/2020|MW134375.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T" }, +"mutations": { "nuc" : [ "C2462T","G3994T","A18174G","G19086T","A19815G","A26105G","C26395T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-12"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "293", +"branch_attrs": { + "labels": { "nuc mutations": "G208T" }, +"mutations": { "nuc" : [ "G208T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "294", +"branch_attrs": { + "labels": { "nuc mutations": "T2845C" }, +"mutations": { "nuc" : [ "T2845C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.401"}}, +"children":[ { +"name": "USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08", +"branch_attrs": { + "labels": { "nuc mutations": "C6500T,C17125T,C21145T,C29708T" }, +"mutations": { "nuc" : [ "C6500T","C17125T","C21145T","C29708T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-2857/2020|MW566820.1|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "G9805T,G11273A,G17944T" }, +"mutations": { "nuc" : [ "G9805T","G11273A","G17944T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-09-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "295", +"branch_attrs": { + "labels": { "nuc mutations": "G23522A" }, +"mutations": { "nuc" : [ "G23522A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.405"}}, +"children":[ { +"name": "USA/CA-CZB-3903/2020|MW134295.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C24106T,C25162A,C25163A,A26927G" }, +"mutations": { "nuc" : [ "C24106T","C25162A","C25163A","A26927G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "A25747C" }, +"mutations": { "nuc" : [ "A25747C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "296", +"branch_attrs": { + "labels": { "nuc mutations": "G11842A,A12759G,G18292T" }, +"mutations": { "nuc" : [ "G11842A","A12759G","G18292T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.236"}}, +"children":[ { +"name": "Switzerland/220021/2020|LR882232.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "A2679G,C11767T" }, +"mutations": { "nuc" : [ "A2679G","C11767T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-27"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96E08F/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "G11230T,G13459T,G26450T" }, +"mutations": { "nuc" : [ "G11230T","G13459T","G26450T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "297", +"branch_attrs": { + "labels": { "nuc mutations": "A8884G,C16694A,C26177T" }, +"mutations": { "nuc" : [ "A8884G","C16694A","C26177T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.447"}}, +"children":[ { +"name": "USA/TX-DSHS-0945/2020|MW190134.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "C24258T" }, +"mutations": { "nuc" : [ "C24258T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1150/2020|MW252120.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "298", +"branch_attrs": { + "labels": { "nuc mutations": "G25049T" }, +"mutations": { "nuc" : [ "G25049T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.406"}}, +"children":[ { +"name": "England/MILK-977645/2020|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C3695T,C18744T" }, +"mutations": { "nuc" : [ "C3695T","C18744T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B325A1/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "G5504A,T25570C,C27303A,C28697T" }, +"mutations": { "nuc" : [ "G5504A","T25570C","C27303A","C28697T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "299", +"branch_attrs": { + "labels": { "nuc mutations": "C29200T,C29451T" }, +"mutations": { "nuc" : [ "C29200T","C29451T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.408"}}, +"children":[ { +"name": "England/CAMC-B34141/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T" }, +"mutations": { "nuc" : [ "G2995T","G3638T","C5833T","C15763T","C18981T","C19160T","A21352C","G21641T","A23998G","G26217T","C26645T","G28083T","G29751T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A795AF/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T" }, +"mutations": { "nuc" : [ "C643T","C3261T","G8264T","C8950T","A9650G","G11310A","A23947G","A24369T","A27256G","C27847T","C28348T","C29535T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "300", +"branch_attrs": { + "labels": { "nuc mutations": "A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T" }, +"mutations": { "nuc" : [ "A5877G","G8017T","C11008T","C20283T","C25714T","G25855T","C27434T","C27998T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.409"}}, +"children":[ { +"name": "USA/MD-MDH-0853/2021|MW621444.1|21-01-20", +"branch_attrs": { + "labels": { "nuc mutations": "C3397T,C18591T" }, +"mutations": { "nuc" : [ "C3397T","C18591T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "21-01-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-14F392/2020|20-12-24", +"branch_attrs": { + "labels": { "nuc mutations": "G3527A,T11008C,C13059T,A26594T" }, +"mutations": { "nuc" : [ "G3527A","T11008C","C13059T","A26594T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-12-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "301", +"branch_attrs": { + "labels": { "nuc mutations": "C1191T,C9521A,G29422T,A29567G" }, +"mutations": { "nuc" : [ "C1191T","C9521A","G29422T","A29567G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.396"}}, +"children":[ { +"name": "USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29", +"branch_attrs": { + "labels": { "nuc mutations": "C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T" }, +"mutations": { "nuc" : [ "C2037T","A2271G","G6566T","C7945T","C9246T","C10116T","C10128T","C11620T","C13554T","G19648T","C23053T","G23441A","G26062T","G26113C","C26801T","G28851T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1114/2020|MW228282.1|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "C24904T,A26986T" }, +"mutations": { "nuc" : [ "C24904T","A26986T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "302", +"branch_attrs": { + "labels": { "nuc mutations": "G2258A,A6441G,C8140T,A9204G,C29445T" }, +"mutations": { "nuc" : [ "G2258A","A6441G","C8140T","A9204G","C29445T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.234"}}, +"children":[ { +"name": "USA/WI-UW-1288/2020|MW035458.1|20-09-02", +"branch_attrs": { + "labels": { "nuc mutations": "C884T" }, +"mutations": { "nuc" : [ "C884T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2808/2020|MW077495.1|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "A19137T,C19366T,G29384T" }, +"mutations": { "nuc" : [ "A19137T","C19366T","G29384T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "303", +"branch_attrs": { + "labels": { "nuc mutations": "C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T" }, +"mutations": { "nuc" : [ "C832T","C2252A","G11243T","T18723C","G25720T","C27532T","C29085T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.407"}}, +"children":[ { +"name": "England/CAMC-94C02D/2020|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C27371T" }, +"mutations": { "nuc" : [ "C27371T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-95DBDD/2020|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "A20667G" }, +"mutations": { "nuc" : [ "A20667G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "304", +"branch_attrs": { + "labels": { "nuc mutations": "G15438T" }, +"mutations": { "nuc" : [ "G15438T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.223"}}, +"children":[ { +"name": "Scotland/CVR3054/2020|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "T6673C,C28887T" }, +"mutations": { "nuc" : [ "T6673C","C28887T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-24"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-95698F/2020|20-06-06", +"branch_attrs": { + "labels": { "nuc mutations": "G3340T,T7258C,T8941C,G12911A" }, +"mutations": { "nuc" : [ "G3340T","T7258C","T8941C","G12911A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "305", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G,C28854T" }, +"mutations": { "nuc" : [ "A10323G","C28854T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.404"}}, +"children":[ { +"name": "306", +"branch_attrs": { + "labels": { "nuc mutations": "G21778A,T28854C" }, +"mutations": { "nuc" : [ "G21778A","T28854C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.419"}}, +"children":[ { +"name": "England/CAMB-79ECC/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-224A2/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "C9979T,G21853T,G29195T,C29272T" }, +"mutations": { "nuc" : [ "C9979T","G21853T","G29195T","C29272T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09", +"branch_attrs": { + "labels": { "nuc mutations": "C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A" }, +"mutations": { "nuc" : [ "C1943T","G5572T","G7042T","G11417T","T16743C","G19086T","G22992A","C24621T","G25311T","C28697T","G28907A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "21-01-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "307", +"branch_attrs": { + "labels": { "nuc mutations": "C2143T,C29370G" }, +"mutations": { "nuc" : [ "C2143T","C29370G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.181"}}, +"children":[ { +"name": "USA/AK-PHL414/2020|MT946886.1|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "G26062T,C29119T" }, +"mutations": { "nuc" : [ "G26062T","C29119T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/AK-PHL689/2020|MW173160.1|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6336T,G16853T,A21794G,G21800T,G25244T" }, +"mutations": { "nuc" : [ "C6336T","G16853T","A21794G","G21800T","G25244T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "308", +"branch_attrs": { + "labels": { "nuc mutations": "C28833T" }, +"mutations": { "nuc" : [ "C28833T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.416"}}, +"children":[ { +"name": "England/MILK-974596/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1625T,C19170T,A20829G,A25255G,C26469T,G27666T" }, +"mutations": { "nuc" : [ "C1625T","C19170T","A20829G","A25255G","C26469T","G27666T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "309", +"branch_attrs": { + "labels": { "nuc mutations": "C25731T,G28703C" }, +"mutations": { "nuc" : [ "C25731T","G28703C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Switzerland/310363/2020|LR898676.1|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "G542A,A4372C,C10277T,G14268A,G29747T" }, +"mutations": { "nuc" : [ "G542A","A4372C","C10277T","G14268A","G29747T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-07"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "310", +"branch_attrs": { + "labels": { "nuc mutations": "C2706T,C28703G" }, +"mutations": { "nuc" : [ "C2706T","C28703G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.416.1"}}, +"children":[ { +"name": "Switzerland/300264/2020|LR898541.1|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "C2470T,C4084T" }, +"mutations": { "nuc" : [ "C2470T","C4084T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-01"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-963433/2020|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "C5339T" }, +"mutations": { "nuc" : [ "C5339T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "311", +"branch_attrs": { + "labels": { "nuc mutations": "C12915T,G21255T" }, +"mutations": { "nuc" : [ "C12915T","G21255T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.225"}}, +"children":[ { +"name": "England/NORW-ECD21/2020|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1684T,C6593T,G14829T,C23525T,G29744A" }, +"mutations": { "nuc" : [ "C1684T","C6593T","G14829T","C23525T","G29744A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-E755B/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "A4198C,C7011T" }, +"mutations": { "nuc" : [ "A4198C","C7011T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "312", +"branch_attrs": { + "labels": { "nuc mutations": "T9697C" }, +"mutations": { "nuc" : [ "T9697C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.180"}}, +"children":[ { +"name": "England/MILK-978626/2020|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "C147T,C12473T,C19602T,C23266T,A29517G" }, +"mutations": { "nuc" : [ "C147T","C12473T","C19602T","C23266T","A29517G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9A565D/2020|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "A2140G,C3015T,C9165T,C10448T,C11866T,T28813G" }, +"mutations": { "nuc" : [ "A2140G","C3015T","C9165T","C10448T","C11866T","T28813G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "313", +"branch_attrs": { + "labels": { "nuc mutations": "C4582T" }, +"mutations": { "nuc" : [ "C4582T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.189"}}, +"children":[ { +"name": "USA/NM-QDX-264/2020|MT806796.1|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "G6404T,C17999T,T25123C,G28378T" }, +"mutations": { "nuc" : [ "G6404T","C17999T","T25123C","G28378T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-10902/2020|MW276406.1|20-08-19", +"branch_attrs": { + "labels": { "nuc mutations": "C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A" }, +"mutations": { "nuc" : [ "C854T","A6659G","G12731A","A13276G","G14656T","G21295T","A25442T","C28093T","G29227A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "314", +"branch_attrs": { + "labels": { "nuc mutations": "T17126C" }, +"mutations": { "nuc" : [ "T17126C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.157"}}, +"children":[ { +"name": "Scotland/EDB1198/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "T5161A,C25046T,G29742T" }, +"mutations": { "nuc" : [ "T5161A","C25046T","G29742T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-20A84/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C28201T,C28546A" }, +"mutations": { "nuc" : [ "C28201T","C28546A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "315", +"branch_attrs": { + "labels": { "nuc mutations": "C6472T,C7815T" }, +"mutations": { "nuc" : [ "C6472T","C7815T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.418"}}, +"children":[ { +"name": "Scotland/EDB6324/2020|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G22363T,T23406C,T26972C" }, +"mutations": { "nuc" : [ "G22363T","T23406C","T26972C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-01"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB4579/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "G13397A,C21682T" }, +"mutations": { "nuc" : [ "G13397A","C21682T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-06"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "316", +"branch_attrs": { + "labels": { "nuc mutations": "G29734C" }, +"mutations": { "nuc" : [ "G29734C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "317", +"branch_attrs": { + "labels": { "nuc mutations": "C17104T" }, +"mutations": { "nuc" : [ "C17104T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "318", +"branch_attrs": { + "labels": { "nuc mutations": "T7767C,C8047T,C22879A" }, +"mutations": { "nuc" : [ "T7767C","C8047T","C22879A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "319", +"branch_attrs": { + "labels": { "nuc mutations": "C27800A" }, +"mutations": { "nuc" : [ "C27800A" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258"}}, +"children":[ { +"name": "England/MILK-ACC08E/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T" }, +"mutations": { "nuc" : [ "G5578A","A6707G","A19116G","C22664T","T27207C","G27962T","G28812T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "320", +"branch_attrs": { + "labels": { "nuc mutations": "C7844T,T24925C,C27920T" }, +"mutations": { "nuc" : [ "C7844T","T24925C","C27920T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/QEUH-9696CE/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2644A,C5221T,C26985T" }, +"mutations": { "nuc" : [ "C2644A","C5221T","C26985T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "321", +"branch_attrs": { + "labels": { "nuc mutations": "C4893T,C29762T" }, +"mutations": { "nuc" : [ "C4893T","C29762T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.16"}}, +"children":[ { +"name": "England/MILK-9A9F7C/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G19879A,C25433T" }, +"mutations": { "nuc" : [ "G19879A","C25433T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/OXON-F42364/2020|20-12-18", +"branch_attrs": { + "labels": { "nuc mutations": "G1306T,G4510T,T8662C,C8733T,C18032T" }, +"mutations": { "nuc" : [ "G1306T","G4510T","T8662C","C8733T","C18032T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "322", +"branch_attrs": { + "labels": { "nuc mutations": "G12988T,G15598A,G18028T,T24910C,T26972C" }, +"mutations": { "nuc" : [ "G12988T","G15598A","G18028T","T24910C","T26972C" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "323", +"branch_attrs": { + "labels": { "nuc mutations": "G25494T" }, +"mutations": { "nuc" : [ "G25494T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "324", +"branch_attrs": { + "labels": { "nuc mutations": "C25386T" }, +"mutations": { "nuc" : [ "C25386T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.6"}}, +"children":[ { +"name": "England/CAMC-A57F03/2020|20-10-09", +"branch_attrs": { + "labels": { "nuc mutations": "T505C,A2419G,G17058T" }, +"mutations": { "nuc" : [ "T505C","A2419G","G17058T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A7D15C/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C21302T,C21304A,C26256T,C27119T,C28453T" }, +"mutations": { "nuc" : [ "C21302T","C21304A","C26256T","C27119T","C28453T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "325", +"branch_attrs": { + "labels": { "nuc mutations": "G28817T" }, +"mutations": { "nuc" : [ "G28817T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.7"}}, +"children":[ { +"name": "Wales/PHWC-47F3A5/2020|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "T9655C,G28198T" }, +"mutations": { "nuc" : [ "T9655C","G28198T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-07"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A85BCC/2020|20-10-17", +"branch_attrs": { + "labels": { "nuc mutations": "T209C,T11857C" }, +"mutations": { "nuc" : [ "T209C","T11857C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "326", +"branch_attrs": { + "labels": { "nuc mutations": "C20451T,G21770A" }, +"mutations": { "nuc" : [ "C20451T","G21770A" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "327", +"branch_attrs": { + "labels": { "nuc mutations": "T7919G" }, +"mutations": { "nuc" : [ "T7919G" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.10"}}, +"children":[ { +"name": "England/ALDP-A2FCA3/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "C24734T" }, +"mutations": { "nuc" : [ "C24734T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/MILK-A69E6B/2020|20-10-09", +"branch_attrs": { + "labels": { "nuc mutations": "A28483G,A28877G" }, +"mutations": { "nuc" : [ "A28483G","A28877G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-09"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "328", +"branch_attrs": { + "labels": { "nuc mutations": "G18583A" }, +"mutations": { "nuc" : [ "G18583A" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.12"}}, +"children":[ { +"name": "England/MILK-A7D1A7/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "T4579A,T27835C" }, +"mutations": { "nuc" : [ "T4579A","T27835C" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A91486/2020|20-10-16", +"branch_attrs": { + "labels": { "nuc mutations": "G2272T,G20679T,G24586T" }, +"mutations": { "nuc" : [ "G2272T","G20679T","G24586T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "329", +"branch_attrs": { + "labels": { "nuc mutations": "C16394T,C22127T,G23876A,G25947T" }, +"mutations": { "nuc" : [ "C16394T","C22127T","G23876A","G25947T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "330", +"branch_attrs": { + "labels": { "nuc mutations": "C29274T" }, +"mutations": { "nuc" : [ "C29274T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "331", +"branch_attrs": { + "labels": { "nuc mutations": "G25218T" }, +"mutations": { "nuc" : [ "G25218T" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.4"}}, +"children":[ { +"name": "England/ALDP-AA169C/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C23191T,G23909A" }, +"mutations": { "nuc" : [ "C23191T","G23909A" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A474DA/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "A6659G" }, +"mutations": { "nuc" : [ "A6659G" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "332", +"branch_attrs": { + "labels": { "nuc mutations": "T8110C" }, +"mutations": { "nuc" : [ "T8110C" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.5"}}, +"children":[ { +"name": "England/ALDP-B483EA/2020|20-11-07", +"branch_attrs": { + "labels": { "nuc mutations": "C10039A,T18402C,C29738T" }, +"mutations": { "nuc" : [ "C10039A","T18402C","C29738T" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "20-11-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AA0035/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T" }, +"mutations": { "nuc" : [ "G11417T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "333", +"branch_attrs": { + "labels": { "nuc mutations": "C829T,C14697T,C18176T,G19398T,G28083T,G28975T" }, +"mutations": { "nuc" : [ "C829T","C14697T","C18176T","G19398T","G28083T","G28975T" ] } + }, +"node_attrs": { + "div":26, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.17"}}, +"children":[ { +"name": "AUT/2021006354/2021|MW672357.1|21-02", +"branch_attrs": { + "labels": { "nuc mutations": "C878T,C12374T,C20384T,C21639T,C29367T" }, +"mutations": { "nuc" : [ "C878T","C12374T","C20384T","C21639T","C29367T" ] } + }, +"node_attrs": { "div": 31, "date": {"value": "21-02"}, "country": {"value": "AUT"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-E7F4C6/2021|21-01-02", +"branch_attrs": { + "labels": { "nuc mutations": "T9070C,C10296T" }, +"mutations": { "nuc" : [ "T9070C","C10296T" ] } + }, +"node_attrs": { "div": 28, "date": {"value": "21-01-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "334", +"branch_attrs": { + "labels": { "nuc mutations": "G18186T,C28854T" }, +"mutations": { "nuc" : [ "G18186T","C28854T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.14"}}, +"children":[ { +"name": "England/CAMC-B3582D/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "A9859G,C14531T" }, +"mutations": { "nuc" : [ "A9859G","C14531T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A796E8/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T" }, +"mutations": { "nuc" : [ "G7360T","G18255T","C22264T","C23929T","G25302T","C25672T","C27519A","C28512T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "335", +"branch_attrs": { + "labels": { "nuc mutations": "G1464A,A10978T,T20799C" }, +"mutations": { "nuc" : [ "G1464A","A10978T","T20799C" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "336", +"branch_attrs": { + "labels": { "nuc mutations": "G5572T,G28375T" }, +"mutations": { "nuc" : [ "G5572T","G28375T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.2"}}, +"children":[ { +"name": "337", +"branch_attrs": { + "labels": { "nuc mutations": "G2072A,C27294T" }, +"mutations": { "nuc" : [ "G2072A","C27294T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "G.1"}}, +"children":[ { +"name": "England/MILK-9C2766/2020|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "T22189C,G27382C,A27383T,T27384C" }, +"mutations": { "nuc" : [ "T22189C","G27382C","A27383T","T27384C" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A95A9F/2020|20-10-19", +"branch_attrs": { + "labels": { "nuc mutations": "T14499C,C17118T,C23854T,A27865T,T27866A" }, +"mutations": { "nuc" : [ "T14499C","C17118T","C23854T","A27865T","T27866A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "Northern_Ireland/QEUH-969C53/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "C19545T,C26408T" }, +"mutations": { "nuc" : [ "C19545T","C26408T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "338", +"branch_attrs": { + "labels": { "nuc mutations": "G18803T" }, +"mutations": { "nuc" : [ "G18803T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.258.3"}}, +"children":[ { +"name": "England/ALDP-9E79B0/2020|20-09-24", +"branch_attrs": { + "labels": { "nuc mutations": "C5817T,T10321C,A10724G,C16469T,C21635T,G25320T" }, +"mutations": { "nuc" : [ "C5817T","T10321C","A10724G","C16469T","C21635T","G25320T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-B561FE/2020|20-11-06", +"branch_attrs": { + "labels": { "nuc mutations": "C1288T,T16213C,A23631G,C26681T,G27882T" }, +"mutations": { "nuc" : [ "C1288T","T16213C","A23631G","C26681T","G27882T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-11-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "339", +"branch_attrs": { + "labels": { "nuc mutations": "C3411T,C3885T" }, +"mutations": { "nuc" : [ "C3411T","C3885T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.256"}}, +"children":[ { +"name": "Scotland/CVR2213/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "T3411C,A3413T,A5353G" }, +"mutations": { "nuc" : [ "T3411C","A3413T","A5353G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-11"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR1909/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C7279T,A14001G,C26801T" }, +"mutations": { "nuc" : [ "C7279T","A14001G","C26801T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-06"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "340", +"branch_attrs": { + "labels": { "nuc mutations": "G12550A,C20740A" }, +"mutations": { "nuc" : [ "G12550A","C20740A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.190"}}, +"children":[ { +"name": "Netherlands/Friesland_9/2020|LR878060.1|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C6628T,C18483T" }, +"mutations": { "nuc" : [ "C6628T","C18483T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-30"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/Friesland_6/2020|LR878056.1|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "C17977T,G28975T" }, +"mutations": { "nuc" : [ "C17977T","G28975T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-28"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "341", +"branch_attrs": { + "labels": { "nuc mutations": "C15324T" }, +"mutations": { "nuc" : [ "C15324T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.5"}}, +"children":[ { +"name": "England/NOTT-10E1B3/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "T3952C,C6268T,T15324C" }, +"mutations": { "nuc" : [ "T3952C","C6268T","T15324C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-37/2020|MT706158.1|20-03-22", +"branch_attrs": { + "labels": { "nuc mutations": "G11417T" }, +"mutations": { "nuc" : [ "G11417T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "342", +"branch_attrs": { + "labels": { "nuc mutations": "C18904T,G25606T" }, +"mutations": { "nuc" : [ "C18904T","G25606T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.151"}}, +"children":[ { +"name": "Wales/PHWC-360E3/2020|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "A3260G,T7185C,G21867T,G25266T,A26513G,G29462C" }, +"mutations": { "nuc" : [ "A3260G","T7185C","G21867T","G25266T","A26513G","G29462C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-26"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-2630/2020|MW191335.1|20-03-15", +"branch_attrs": { + "labels": { "nuc mutations": "C21646T,C22208T" }, +"mutations": { "nuc" : [ "C21646T","C22208T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "343", +"branch_attrs": { + "labels": { "nuc mutations": "T10561C" }, +"mutations": { "nuc" : [ "T10561C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.220"}}, +"children":[ { +"name": "Netherlands/NA_289/2020|LR878031.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C12085T,A23173G,C28844T" }, +"mutations": { "nuc" : [ "C12085T","A23173G","C28844T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-31"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "France/10065EE/2020|MT470176.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "C26895T,C29013T" }, +"mutations": { "nuc" : [ "C26895T","C29013T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03"}, "country": {"value": "France"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "344", +"branch_attrs": { + "labels": { "nuc mutations": "C3634T,C28854T" }, +"mutations": { "nuc" : [ "C3634T","C28854T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.210"}}, +"children":[ { +"name": "IND/nimh-19510/2020|MW181843.1|20-05-16", +"branch_attrs": { + "labels": { "nuc mutations": "C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T" }, +"mutations": { "nuc" : [ "C1684T","G2819T","T4949C","C8025T","T28854C","G28899T","C29376T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-16"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC174b/2020|MT607610.1|20-06-05", +"branch_attrs": { + "labels": { "nuc mutations": "C22444T" }, +"mutations": { "nuc" : [ "C22444T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-05"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "345", +"branch_attrs": { + "labels": { "nuc mutations": "G28202A" }, +"mutations": { "nuc" : [ "G28202A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.178"}}, +"children":[ { +"name": "France/10036BG/2020|MT470106.1|20-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03"}, "country": {"value": "France"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IHUCOVID-0033|LR794417.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "G16089A,G24794T" }, +"mutations": { "nuc" : [ "G16089A","G24794T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0033|LR794417.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "346", +"branch_attrs": { + "labels": { "nuc mutations": "C25433T" }, +"mutations": { "nuc" : [ "C25433T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.147"}}, +"children":[ { +"name": "England/PORT-2D0D4C/2020|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "A10781G,A16169G,G21600T,C29546T" }, +"mutations": { "nuc" : [ "A10781G","A16169G","G21600T","C29546T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100210/2020|LR884314.1|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C1191A,G15260A" }, +"mutations": { "nuc" : [ "C1191A","G15260A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "347", +"branch_attrs": { + "labels": { "nuc mutations": "A7031G,G13617T" }, +"mutations": { "nuc" : [ "A7031G","G13617T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.213"}}, +"children":[ { +"name": "POL/PL_MCB_72/2020|MW273854.1|20-05-10", +"branch_attrs": { + "labels": { "nuc mutations": "A2848G,C9286T,C23202T" }, +"mutations": { "nuc" : [ "A2848G","C9286T","C23202T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-10"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "POL/PL_MCB_97/2020|MW273879.1|20-05-10", +"branch_attrs": { + "labels": { "nuc mutations": "C2570T" }, +"mutations": { "nuc" : [ "C2570T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-10"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "348", +"branch_attrs": { + "labels": { "nuc mutations": "G19542T,G20679A,T27576G" }, +"mutations": { "nuc" : [ "G19542T","G20679A","T27576G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.209"}}, +"children":[ { +"name": "Scotland/CVR3629/2020|20-05-24", +"branch_attrs": { + "labels": { "nuc mutations": "G18380T" }, +"mutations": { "nuc" : [ "G18380T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-24"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-5456F9/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C6606T" }, +"mutations": { "nuc" : [ "C6606T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "349", +"branch_attrs": { + "labels": { "nuc mutations": "C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T" }, +"mutations": { "nuc" : [ "C622T","G4657T","T5182C","C11758T","C12043T","G16846T","C25075T","C25904T","C28269T","C29733T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.149"}}, +"children":[ { +"name": "England/QEUH-9CE80D/2020|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "A21018G,C21302T,C21304A,G21305A,C27167T,C28708T" }, +"mutations": { "nuc" : [ "A21018G","C21302T","C21304A","G21305A","C27167T","C28708T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-990752/2020|20-08-29", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "350", +"branch_attrs": { + "labels": { "nuc mutations": "C15277T" }, +"mutations": { "nuc" : [ "C15277T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.6"}}, +"children":[ { +"name": "AUS/VIC38/2020|MT450953.1|20-03-11", +"branch_attrs": { + "labels": { "nuc mutations": "C10350T" }, +"mutations": { "nuc" : [ "C10350T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-11"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IHUCOVID-0133|LR794459.1|?", +"branch_attrs": { + "labels": { "nuc mutations": "C8394T" }, +"mutations": { "nuc" : [ "C8394T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "?"}, "country": {"value": "IHUCOVID-0133|LR794459.1|?"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "351", +"branch_attrs": { + "labels": { "nuc mutations": "A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T" }, +"mutations": { "nuc" : [ "A4457G","C4891T","C5907T","C12312T","A15187G","C23709T","T27576C","A28273T","A28274G","G28276C","G28280A","C28846T","C28887T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.214"}}, +"children":[ { +"name": "England/PHEC-1555C0/2021|21-01-16", +"branch_attrs": { + "labels": { "nuc mutations": "C673T,A11430G,C21846T,C22995A,C25504G,G25894A" }, +"mutations": { "nuc" : [ "C673T","A11430G","C21846T","C22995A","C25504G","G25894A" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-01-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-E6578E/2020|20-12-30", +"branch_attrs": { + "labels": { "nuc mutations": "C5184T,A9204G,A10248G,C19975A" }, +"mutations": { "nuc" : [ "C5184T","A9204G","A10248G","C19975A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "352", +"branch_attrs": { + "labels": { "nuc mutations": "G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T" }, +"mutations": { "nuc" : [ "G521T","A761G","A1904G","G4904A","C6681T","C6726T","C9559T","C16762T","G16912T","G19735T","C23934T","C25642T","C26110T","G26221A","A26332G","G28380A","G29764T" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.208"}}, +"children":[ { +"name": "England/CAMC-106052A/2021|21-01-16", +"branch_attrs": { + "labels": { "nuc mutations": "C14184T,A15402G,C23170T,C24138A,C24381T,T25303C" }, +"mutations": { "nuc" : [ "C14184T","A15402G","C23170T","C24138A","C24381T","T25303C" ] } + }, +"node_attrs": { "div": 28, "date": {"value": "21-01-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LOND-12F6633/2020|20-12-15", +"branch_attrs": { + "labels": { "nuc mutations": "G9425T,C21997T,G24116A,C29200T" }, +"mutations": { "nuc" : [ "G9425T","C21997T","G24116A","C29200T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-12-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "353", +"branch_attrs": { + "labels": { "nuc mutations": "G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A" }, +"mutations": { "nuc" : [ "G3239A","G7042T","T17142A","T17688C","G21334T","G28655A","G28881A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.218"}}, +"children":[ { +"name": "Switzerland/240009/2020|LR880588.1|20-08-07", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-07"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/240084/2020|LR880634.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "C815T,C8752T,C25904T,G27147T" }, +"mutations": { "nuc" : [ "C815T","C8752T","C25904T","G27147T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-12"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "354", +"branch_attrs": { + "labels": { "nuc mutations": "A26530G" }, +"mutations": { "nuc" : [ "A26530G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "355", +"branch_attrs": { + "labels": { "nuc mutations": "G11596T" }, +"mutations": { "nuc" : [ "G11596T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.96"}}, +"children":[ { +"name": "USA/MN67-MDH67/2020|MT911566.1|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_292/2020|LR878032.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G20568A" }, +"mutations": { "nuc" : [ "G20568A" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-01"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "356", +"branch_attrs": { + "labels": { "nuc mutations": "C8293T,T18488C,T24739C" }, +"mutations": { "nuc" : [ "C8293T","T18488C","T24739C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.128"}}, +"children":[ { +"name": "Switzerland/101166/2020|LR824397.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C22323T" }, +"mutations": { "nuc" : [ "C22323T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-31"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100154/2020|LR824311.1|20-03-16", +"branch_attrs": { + "labels": { "nuc mutations": "C17118T" }, +"mutations": { "nuc" : [ "C17118T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-16"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "357", +"branch_attrs": { + "labels": { "nuc mutations": "C15277T,A21917G" }, +"mutations": { "nuc" : [ "C15277T","A21917G" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.205"}}, +"children":[ { +"name": "PER/covper020/2020|MW030251.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T" }, +"mutations": { "nuc" : [ "T1147C","C5907T","A17429G","G21917A","C25872T","C27881T","C28651T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-03"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/covper091/2020|MW030227.1|20-03-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-17"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "358", +"branch_attrs": { + "labels": { "nuc mutations": "A2775G,G4255T,C13568T,A20355G" }, +"mutations": { "nuc" : [ "A2775G","G4255T","C13568T","A20355G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.97"}}, +"children":[ { +"name": "England/CAMB-737D6/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C6861T" }, +"mutations": { "nuc" : [ "C6861T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1B08D9/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "C14235T,G25699T" }, +"mutations": { "nuc" : [ "C14235T","G25699T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "359", +"branch_attrs": { + "labels": { "nuc mutations": "G3831A" }, +"mutations": { "nuc" : [ "G3831A" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.215"}}, +"children":[ { +"name": "Scotland/CVR2927/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "A1801G,C9857T,C18568T" }, +"mutations": { "nuc" : [ "A1801G","C9857T","C18568T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/GCVR-173C30/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "T7441C" }, +"mutations": { "nuc" : [ "T7441C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-07"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "360", +"branch_attrs": { + "labels": { "nuc mutations": "T445C,C6286T,G21255C,C22227T,C28932T,G29645T" }, +"mutations": { "nuc" : [ "T445C","C6286T","G21255C","C22227T","C28932T","G29645T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.24"}}, +"children":[ { +"name": "361", +"branch_attrs": { + "labels": { "nuc mutations": "C26801G" }, +"mutations": { "nuc" : [ "C26801G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": "20E.EU1"}, "MAT_Clade_1": {"value": "B.1.177.14"}}, +"children":[ { +"name": "362", +"branch_attrs": { + "labels": { "nuc mutations": "C3426T,C19862T" }, +"mutations": { "nuc" : [ "C3426T","C19862T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "363", +"branch_attrs": { + "labels": { "nuc mutations": "C11050A" }, +"mutations": { "nuc" : [ "C11050A" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-BB0022/2020|20-11-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-BB0031/2020|20-11-18", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/PHEC-152C73/2020|20-11-16", +"branch_attrs": { + "labels": { "nuc mutations": "C21682T" }, +"mutations": { "nuc" : [ "C21682T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "364", +"branch_attrs": { + "labels": { "nuc mutations": "T12226C" }, +"mutations": { "nuc" : [ "T12226C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Scotland/QEUH-96B4E0/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C3093T,C11102T,C18555T" }, +"mutations": { "nuc" : [ "C3093T","C11102T","C18555T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-17"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9AA782/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C16362T,C19164T,G21786T,C24904T" }, +"mutations": { "nuc" : [ "C16362T","C19164T","G21786T","C24904T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "365", +"branch_attrs": { + "labels": { "nuc mutations": "T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T" }, +"mutations": { "nuc" : [ "T4195A","C10977T","G25049T","G25062T","C26151T","C28657T","C29366T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.11"}}, +"children":[ { +"name": "Scotland/QEUH-9D11C0/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "C24334T" }, +"mutations": { "nuc" : [ "C24334T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-16"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-A0077A/2020|20-10-02", +"branch_attrs": { + "labels": { "nuc mutations": "C6027T,T10977C,A25327G" }, +"mutations": { "nuc" : [ "C6027T","T10977C","A25327G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "366", +"branch_attrs": { + "labels": { "nuc mutations": "C27944T" }, +"mutations": { "nuc" : [ "C27944T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177"}}, +"children":[ { +"name": "England/ALDP-AA0ED1/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "C445T,G28079T" }, +"mutations": { "nuc" : [ "C445T","G28079T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-A4CF6B/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "C4534T,C5544T" }, +"mutations": { "nuc" : [ "C4534T","C5544T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "367", +"branch_attrs": { + "labels": { "nuc mutations": "G204T" }, +"mutations": { "nuc" : [ "G204T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "368", +"branch_attrs": { + "labels": { "nuc mutations": "T16242A" }, +"mutations": { "nuc" : [ "T16242A" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.21"}}, +"children":[ { +"name": "England/ALDP-9BE8B5/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "G28745A" }, +"mutations": { "nuc" : [ "G28745A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB10724/2020|20-12-04", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,C10615T,T12134C,C21365T,C22987T" }, +"mutations": { "nuc" : [ "C2509T","C10615T","T12134C","C21365T","C22987T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "369", +"branch_attrs": { + "labels": { "nuc mutations": "C21614T" }, +"mutations": { "nuc" : [ "C21614T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.22"}}, +"children":[ { +"name": "Scotland/CVR4309/2020|20-09-14", +"branch_attrs": { + "labels": { "nuc mutations": "C7471T" }, +"mutations": { "nuc" : [ "C7471T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "370", +"branch_attrs": { + "labels": { "nuc mutations": "C6317T" }, +"mutations": { "nuc" : [ "C6317T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.6"}}, +"children":[ { +"name": "England/CAMC-9DFBC4/2020|20-09-21", +"branch_attrs": { + "labels": { "nuc mutations": "G9658T,T21841C" }, +"mutations": { "nuc" : [ "G9658T","T21841C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-AD1165/2020|20-10-25", +"branch_attrs": { + "labels": { "nuc mutations": "C4795T,T5471C,A21631T" }, +"mutations": { "nuc" : [ "C4795T","T5471C","A21631T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "371", +"branch_attrs": { + "labels": { "nuc mutations": "G17944T,C24334T,T24814C,C27769T" }, +"mutations": { "nuc" : [ "G17944T","C24334T","T24814C","C27769T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.12"}}, +"children":[ { +"name": "England/ALDP-FB5E3E/2021|21-01-11", +"branch_attrs": { + "labels": { "nuc mutations": "G1141A,T11522G,A13315G,C18744T,T21973C" }, +"mutations": { "nuc" : [ "G1141A","T11522G","A13315G","C18744T","T21973C" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-E8756E/2021|21-01-04", +"branch_attrs": { + "labels": { "nuc mutations": "C12781T,G17632A,C28453T" }, +"mutations": { "nuc" : [ "C12781T","G17632A","C28453T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "21-01-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "372", +"branch_attrs": { + "labels": { "nuc mutations": "T24769C,C25460T" }, +"mutations": { "nuc" : [ "T24769C","C25460T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.5"}}, +"children":[ { +"name": "England/ALDP-A2EAE6/2020|20-10-05", +"branch_attrs": { + "labels": { "nuc mutations": "C337T,T21294A,G21295A,G21296A,A25008G" }, +"mutations": { "nuc" : [ "C337T","T21294A","G21295A","G21296A","A25008G" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-A636C3/2020|20-10-10", +"branch_attrs": { + "labels": { "nuc mutations": "C593T,T26903C,C26936T" }, +"mutations": { "nuc" : [ "C593T","T26903C","C26936T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-10"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "373", +"branch_attrs": { + "labels": { "nuc mutations": "C15480T" }, +"mutations": { "nuc" : [ "C15480T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.7"}}, +"children":[ { +"name": "England/QEUH-A76C07/2020|20-10-12", +"branch_attrs": { + "labels": { "nuc mutations": "G21777A" }, +"mutations": { "nuc" : [ "G21777A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-AC7997/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C125T" }, +"mutations": { "nuc" : [ "C125T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "374", +"branch_attrs": { + "labels": { "nuc mutations": "G8179T" }, +"mutations": { "nuc" : [ "G8179T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.8"}}, +"children":[ { +"name": "Scotland/QEUH-9DC927/2020|20-09-22", +"branch_attrs": { + "labels": { "nuc mutations": "C4794T,T8179G,G23006A" }, +"mutations": { "nuc" : [ "C4794T","T8179G","G23006A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-22"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-9B75D3/2020|20-09-04", +"branch_attrs": { + "labels": { "nuc mutations": "G29778T" }, +"mutations": { "nuc" : [ "G29778T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "375", +"branch_attrs": { + "labels": { "nuc mutations": "C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T" }, +"mutations": { "nuc" : [ "C10507T","C11152T","C11824T","A18840G","G23309C","G26918T","G27589A","G28436T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.26"}}, +"children":[ { +"name": "England/QEUH-9B3A8D/2020|20-09-04", +"branch_attrs": { + "labels": { "nuc mutations": "T11152C,T11824C" }, +"mutations": { "nuc" : [ "T11152C","T11824C" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-09-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-F1F9C/2020|20-10-24", +"branch_attrs": { + "labels": { "nuc mutations": "C203T,C5183T,A8031G,C9207T,C25521T,G26690T" }, +"mutations": { "nuc" : [ "C203T","C5183T","A8031G","C9207T","C25521T","G26690T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "20-10-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "376", +"branch_attrs": { + "labels": { "nuc mutations": "A1987G" }, +"mutations": { "nuc" : [ "A1987G" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "377", +"branch_attrs": { + "labels": { "nuc mutations": "T14721C,T25519G" }, +"mutations": { "nuc" : [ "T14721C","T25519G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.2"}}, +"children":[ { +"name": "England/QEUH-AE4EA4/2020|20-10-27", +"branch_attrs": { + "labels": { "nuc mutations": "C26894T,T28277C,A28612G" }, +"mutations": { "nuc" : [ "C26894T","T28277C","A28612G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9BECB9/2020|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "C23029T" }, +"mutations": { "nuc" : [ "C23029T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "378", +"branch_attrs": { + "labels": { "nuc mutations": "G6344T" }, +"mutations": { "nuc" : [ "G6344T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.3"}}, +"children":[ { +"name": "Wales/PHWC-16E6A3/2020|20-10-02", +"branch_attrs": { + "labels": { "nuc mutations": "C3768T,C5031T,C18555T,T20976C" }, +"mutations": { "nuc" : [ "C3768T","C5031T","C18555T","T20976C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-02"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9A9D09/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "A1230G" }, +"mutations": { "nuc" : [ "A1230G" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "379", +"branch_attrs": { + "labels": { "nuc mutations": "C66T,G10870T,A11781G,C25614T" }, +"mutations": { "nuc" : [ "C66T","G10870T","A11781G","C25614T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.4"}}, +"children":[ { +"name": "England/QEUH-B6C0E9/2020|20-11-11", +"branch_attrs": { + "labels": { "nuc mutations": "C5730T,C14318T,C23644T,C29739T" }, +"mutations": { "nuc" : [ "C5730T","C14318T","C23644T","C29739T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-AEA62E/2020|20-10-25", +"branch_attrs": { + "labels": { "nuc mutations": "C18329T" }, +"mutations": { "nuc" : [ "C18329T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "380", +"branch_attrs": { + "labels": { "nuc mutations": "A1866G,A6889C,C12923T,C18029T,C19269T,A27137G" }, +"mutations": { "nuc" : [ "A1866G","A6889C","C12923T","C18029T","C19269T","A27137G" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.25"}}, +"children":[ { +"name": "England/PHEC-14E15D/2020|20-12-09", +"branch_attrs": { + "labels": { "nuc mutations": "C20178T" }, +"mutations": { "nuc" : [ "C20178T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-12-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-149635/2020|20-10-28", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "381", +"branch_attrs": { + "labels": { "nuc mutations": "C13671T,C14805T,G17278T,A20284T,T20285C,A27755T" }, +"mutations": { "nuc" : [ "C13671T","C14805T","G17278T","A20284T","T20285C","A27755T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.23"}}, +"children":[ { +"name": "Switzerland/270068/2020|LR882987.1|20-09-02", +"branch_attrs": { + "labels": { "nuc mutations": "G17058T" }, +"mutations": { "nuc" : [ "G17058T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-02"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/332169/2020|LR898966.1|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "G21830T,C27881T" }, +"mutations": { "nuc" : [ "G21830T","C27881T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-22"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "382", +"branch_attrs": { + "labels": { "nuc mutations": "A408G" }, +"mutations": { "nuc" : [ "A408G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "383", +"branch_attrs": { + "labels": { "nuc mutations": "C22088T,C29686T" }, +"mutations": { "nuc" : [ "C22088T","C29686T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.17"}}, +"children":[ { +"name": "England/ALDP-A95DE1/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "G21193T,G24794T,G25135T,G26801C,T26843C" }, +"mutations": { "nuc" : [ "G21193T","G24794T","G25135T","G26801C","T26843C" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9E75E9/2020|20-09-25", +"branch_attrs": { + "labels": { "nuc mutations": "G2764T" }, +"mutations": { "nuc" : [ "G2764T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "384", +"branch_attrs": { + "labels": { "nuc mutations": "G27877T" }, +"mutations": { "nuc" : [ "G27877T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.13"}}, +"children":[ { +"name": "England/MILK-AC7B0A/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C7528T,G24098T,C28315T,G28939T" }, +"mutations": { "nuc" : [ "C7528T","G24098T","C28315T","G28939T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NOTT-11336A/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "G713A,A21127G,T26163C" }, +"mutations": { "nuc" : [ "G713A","A21127G","T26163C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "385", +"branch_attrs": { + "labels": { "nuc mutations": "C28310A" }, +"mutations": { "nuc" : [ "C28310A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.16"}}, +"children":[ { +"name": "England/MILK-ABB8D5/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C9857A,A28304T" }, +"mutations": { "nuc" : [ "C9857A","A28304T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-2884A8/2020|20-11-22", +"branch_attrs": { + "labels": { "nuc mutations": "C6525T,C10376T,G17032A,C23557T,C24106T" }, +"mutations": { "nuc" : [ "C6525T","C10376T","G17032A","C23557T","C24106T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-11-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "386", +"branch_attrs": { + "labels": { "nuc mutations": "G23311C" }, +"mutations": { "nuc" : [ "G23311C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "387", +"branch_attrs": { + "labels": { "nuc mutations": "T29185A" }, +"mutations": { "nuc" : [ "T29185A" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.19"}}, +"children":[ { +"name": "England/MILK-A799FE/2020|20-10-15", +"branch_attrs": { + "labels": { "nuc mutations": "A2658G,C17004T,C17125T" }, +"mutations": { "nuc" : [ "A2658G","C17004T","C17125T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-A417F5/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "T23062C,G27459T,G29755T" }, +"mutations": { "nuc" : [ "T23062C","G27459T","G29755T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "388", +"branch_attrs": { + "labels": { "nuc mutations": "C10626T" }, +"mutations": { "nuc" : [ "C10626T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.20"}}, +"children":[ { +"name": "England/QEUH-AE2A48/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "C6114A,T17208C" }, +"mutations": { "nuc" : [ "C6114A","T17208C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A68CF9/2020|20-10-12", +"branch_attrs": { + "labels": { "nuc mutations": "G6476T" }, +"mutations": { "nuc" : [ "G6476T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "389", +"branch_attrs": { + "labels": { "nuc mutations": "G25440T,C27752T" }, +"mutations": { "nuc" : [ "G25440T","C27752T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.18"}}, +"children":[ { +"name": "England/CAMB-1B6439/2020|20-09-22", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G,C28310A" }, +"mutations": { "nuc" : [ "A10323G","C28310A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9F1898/2020|20-09-25", +"branch_attrs": { + "labels": { "nuc mutations": "C5239T" }, +"mutations": { "nuc" : [ "C5239T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "390", +"branch_attrs": { + "labels": { "nuc mutations": "G22346T" }, +"mutations": { "nuc" : [ "G22346T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "391", +"branch_attrs": { + "labels": { "nuc mutations": "G28321A" }, +"mutations": { "nuc" : [ "G28321A" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.10"}}, +"children":[ { +"name": "England/MILK-A7CDC2/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "G10996T,G24867T" }, +"mutations": { "nuc" : [ "G10996T","G24867T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-A5845E/2020|20-10-08", +"branch_attrs": { + "labels": { "nuc mutations": "C13009T,G17721T,G18462T,C21234T,G23675C" }, +"mutations": { "nuc" : [ "C13009T","G17721T","G18462T","C21234T","G23675C" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "392", +"branch_attrs": { + "labels": { "nuc mutations": "G21800T,A22053C" }, +"mutations": { "nuc" : [ "G21800T","A22053C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.9"}}, +"children":[ { +"name": "England/ALDP-AA10DA/2020|20-10-22", +"branch_attrs": { + "labels": { "nuc mutations": "T7549C,C9073T,G10870T" }, +"mutations": { "nuc" : [ "T7549C","C9073T","G10870T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-4815AA/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C12049T" }, +"mutations": { "nuc" : [ "C12049T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-13"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "393", +"branch_attrs": { + "labels": { "nuc mutations": "C5170T,C10078T,G11132T,G11417T,G22051T,G29179T" }, +"mutations": { "nuc" : [ "C5170T","C10078T","G11132T","G11417T","G22051T","G29179T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.177.15"}}, +"children":[ { +"name": "England/QEUH-AD0DDB/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "G14187A,A25948T,C29274T" }, +"mutations": { "nuc" : [ "G14187A","A25948T","C29274T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/MILK-9E3240/2020|20-09-21", +"branch_attrs": { + "labels": { "nuc mutations": "A9409G,T29604C" }, +"mutations": { "nuc" : [ "A9409G","T29604C" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-09-21"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/ALDP-A6CC8C/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "C6627T,C25791T,C26270T" }, +"mutations": { "nuc" : [ "C6627T","C25791T","C26270T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "394", +"branch_attrs": { + "labels": { "nuc mutations": "A24862G" }, +"mutations": { "nuc" : [ "A24862G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.8"}}, +"children":[ { +"name": "USA/CA-CZB-2091/2020|MT750490.1|20-05-07", +"branch_attrs": { + "labels": { "nuc mutations": "T7132C,C8327T,C9112T,C24442T,G25429T" }, +"mutations": { "nuc" : [ "T7132C","C8327T","C9112T","C24442T","G25429T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/140091/2020|LR824563.1|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "T658C,A2655C,C28629T" }, +"mutations": { "nuc" : [ "T658C","A2655C","C28629T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "395", +"branch_attrs": { + "labels": { "nuc mutations": "C7834T,C16997T,G25429T" }, +"mutations": { "nuc" : [ "C7834T","C16997T","G25429T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.179"}}, +"children":[ { +"name": "England/ALDP-49A5AE/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C2983T,G10565A,C17336T" }, +"mutations": { "nuc" : [ "C2983T","G10565A","C17336T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-4A2A77/2020|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "396", +"branch_attrs": { + "labels": { "nuc mutations": "C1909T" }, +"mutations": { "nuc" : [ "C1909T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.81"}}, +"children":[ { +"name": "England/BRIS-12755E/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C9438T,G16647T,C22264T" }, +"mutations": { "nuc" : [ "C9438T","G16647T","C22264T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12468B/2020|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "T27576C" }, +"mutations": { "nuc" : [ "T27576C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "397", +"branch_attrs": { + "labels": { "nuc mutations": "C2940T" }, +"mutations": { "nuc" : [ "C2940T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.201"}}, +"children":[ { +"name": "England/NORW-E9DF7/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "C7765T" }, +"mutations": { "nuc" : [ "C7765T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/EDB156/2020|20-03-23", +"branch_attrs": { + "labels": { "nuc mutations": "C4276T,C26822T,G29227A" }, +"mutations": { "nuc" : [ "C4276T","C26822T","G29227A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-23"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "398", +"branch_attrs": { + "labels": { "nuc mutations": "C6990T" }, +"mutations": { "nuc" : [ "C6990T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.395"}}, +"children":[ { +"name": "Wales/PHWC-27B20/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "T22435C" }, +"mutations": { "nuc" : [ "T22435C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-30"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2624A/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "C27476T" }, +"mutations": { "nuc" : [ "C27476T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-27"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "399", +"branch_attrs": { + "labels": { "nuc mutations": "C29200T" }, +"mutations": { "nuc" : [ "C29200T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.35"}}, +"children":[ { +"name": "Wales/PHWC-16930B/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "C3264T" }, +"mutations": { "nuc" : [ "C3264T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-34285/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "A6616G,C12915T" }, +"mutations": { "nuc" : [ "A6616G","C12915T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-14"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "400", +"branch_attrs": { + "labels": { "nuc mutations": "C26256T,C29668T" }, +"mutations": { "nuc" : [ "C26256T","C29668T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.384"}}, +"children":[ { +"name": "USA/UT-08320/2020|MW206019.1|20-05-15", +"branch_attrs": { + "labels": { "nuc mutations": "A11782G,G27987T,C28292A,G29755T" }, +"mutations": { "nuc" : [ "A11782G","G27987T","C28292A","G29755T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C5184T,C5416T,G8017T" }, +"mutations": { "nuc" : [ "C5184T","C5416T","G8017T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "401", +"branch_attrs": { + "labels": { "nuc mutations": "T26512C" }, +"mutations": { "nuc" : [ "T26512C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.67"}}, +"children":[ { +"name": "Wales/PHWC-2BF8A/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C19011T,C22323T,C26415T" }, +"mutations": { "nuc" : [ "C19011T","C22323T","C26415T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-02"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-29E43/2020|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "G9220A" }, +"mutations": { "nuc" : [ "G9220A" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-04"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "402", +"branch_attrs": { + "labels": { "nuc mutations": "C25350T" }, +"mutations": { "nuc" : [ "C25350T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.98"}}, +"children":[ { +"name": "England/LOND-D3534/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "T27280C" }, +"mutations": { "nuc" : [ "T27280C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-20C24/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C3096T,G3939A,G8179T" }, +"mutations": { "nuc" : [ "C3096T","G3939A","G8179T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "403", +"branch_attrs": { + "labels": { "nuc mutations": "T17835C" }, +"mutations": { "nuc" : [ "T17835C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.76"}}, +"children":[ { +"name": "England/CAMB-7D2EA/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "G26273T,C26408T,C29370T" }, +"mutations": { "nuc" : [ "G26273T","C26408T","C29370T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LIVE-A63E5/2020|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "G680T" }, +"mutations": { "nuc" : [ "G680T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "404", +"branch_attrs": { + "labels": { "nuc mutations": "A25575C" }, +"mutations": { "nuc" : [ "A25575C" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.383"}}, +"children":[ { +"name": "Wales/PHWC-260C8/2020|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "C12242T,C22264T" }, +"mutations": { "nuc" : [ "C12242T","C22264T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-26"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12F969/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C96T,C4113T,G14857T" }, +"mutations": { "nuc" : [ "C96T","C4113T","G14857T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "405", +"branch_attrs": { + "labels": { "nuc mutations": "C14741T" }, +"mutations": { "nuc" : [ "C14741T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.142"}}, +"children":[ { +"name": "England/PHEC-2083F/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "A187G,A5650G,C25350T" }, +"mutations": { "nuc" : [ "A187G","A5650G","C25350T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-16C6F0/2020|20-06-09", +"branch_attrs": { + "labels": { "nuc mutations": "T8944C,G25552T" }, +"mutations": { "nuc" : [ "T8944C","G25552T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-06-09"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "406", +"branch_attrs": { + "labels": { "nuc mutations": "A1610G,C9344T,C13335T,C28887T" }, +"mutations": { "nuc" : [ "A1610G","C9344T","C13335T","C28887T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.131"}}, +"children":[ { +"name": "England/QEUH-B2DD0B/2020|20-11-03", +"branch_attrs": { + "labels": { "nuc mutations": "G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G" }, +"mutations": { "nuc" : [ "G2086T","G2995T","G12031A","A17759G","A17799G","G19816T","A21231G","C21742T","T21760C","C22000T","C24370T","A25814G" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-11-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A7B0BB/2020|20-10-14", +"branch_attrs": { + "labels": { "nuc mutations": "C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T" }, +"mutations": { "nuc" : [ "C222T","C841T","G1958A","A4870G","C6543T","C7955T","C12488T","A25946C","C29095T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "407", +"branch_attrs": { + "labels": { "nuc mutations": "C5506T,G14241T" }, +"mutations": { "nuc" : [ "C5506T","G14241T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.376"}}, +"children":[ { +"name": "Wales/PHWC-27461/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C19374T" }, +"mutations": { "nuc" : [ "C19374T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-31"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-29F13/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "C19151T,G23612A" }, +"mutations": { "nuc" : [ "C19151T","G23612A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "408", +"branch_attrs": { + "labels": { "nuc mutations": "T7438C,C29353T" }, +"mutations": { "nuc" : [ "T7438C","C29353T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.23"}}, +"children":[ { +"name": "AUS/VIC989/2020|MT451674.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "A26864G,C27630T" }, +"mutations": { "nuc" : [ "A26864G","C27630T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-31"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1056/2020|MT451723.1|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "A21944T" }, +"mutations": { "nuc" : [ "A21944T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-03"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "409", +"branch_attrs": { + "labels": { "nuc mutations": "A187G" }, +"mutations": { "nuc" : [ "A187G" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "410", +"branch_attrs": { + "labels": { "nuc mutations": "C16017T,T27212C,G27561T" }, +"mutations": { "nuc" : [ "C16017T","T27212C","G27561T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.207"}}, +"children":[ { +"name": "USA/TX-DSHS-0342/2020|MW114979.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C16393T,G18546T,C24718A,C27600T,C29421T" }, +"mutations": { "nuc" : [ "C16393T","G18546T","C24718A","C27600T","C29421T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1397/2020|MW309099.1|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "A10770G" }, +"mutations": { "nuc" : [ "A10770G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "411", +"branch_attrs": { + "labels": { "nuc mutations": "C19066A" }, +"mutations": { "nuc" : [ "C19066A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.198"}}, +"children":[ { +"name": "England/BRIS-12B2BD/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "A1699G,C6361T,C25797T,C27577T,C27641T" }, +"mutations": { "nuc" : [ "A1699G","C6361T","C25797T","C27577T","C27641T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-128DCE/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C12213T" }, +"mutations": { "nuc" : [ "C12213T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "412", +"branch_attrs": { + "labels": { "nuc mutations": "G14580T" }, +"mutations": { "nuc" : [ "G14580T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.153"}}, +"children":[ { +"name": "England/LIVE-A65EF/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "G10523C" }, +"mutations": { "nuc" : [ "G10523C" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-2B7CE/2020|20-04-12", +"branch_attrs": { + "labels": { "nuc mutations": "C9857T,G28903C" }, +"mutations": { "nuc" : [ "C9857T","G28903C" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-12"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "413", +"branch_attrs": { + "labels": { "nuc mutations": "A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T" }, +"mutations": { "nuc" : [ "A2292C","C2836T","G4300T","C18568T","C18877T","G21724T","C29750T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.113"}}, +"children":[ { +"name": "IND/GBRC238b/2020|MT676367.1|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "T18877C,C22444T,C28887T,T29750C" }, +"mutations": { "nuc" : [ "T18877C","C22444T","C28887T","T29750C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-12"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC209a/2020|MT664202.1|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "G25563T" }, +"mutations": { "nuc" : [ "G25563T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-11"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "414", +"branch_attrs": { + "labels": { "nuc mutations": "C1884T,T26497C" }, +"mutations": { "nuc" : [ "C1884T","T26497C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.70"}}, +"children":[ { +"name": "Scotland/GCVR-1725BE/2020|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "C6730T,G28001T" }, +"mutations": { "nuc" : [ "C6730T","G28001T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-04"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR30/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "415", +"branch_attrs": { + "labels": { "nuc mutations": "G4866T,C14425A" }, +"mutations": { "nuc" : [ "G4866T","C14425A" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.145"}}, +"children":[ { +"name": "IND/GBRC99/2020|MT509504.1|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A21511G" }, +"mutations": { "nuc" : [ "A21511G" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-06"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC31/2020|MT467247.1|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C3737T,C12710T,T21890C" }, +"mutations": { "nuc" : [ "C3737T","C12710T","T21890C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-29"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "416", +"branch_attrs": { + "labels": { "nuc mutations": "C6723T,T26094C" }, +"mutations": { "nuc" : [ "C6723T","T26094C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.197"}}, +"children":[ { +"name": "AUS/VIC1239/2020|MT451821.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "G28476T" }, +"mutations": { "nuc" : [ "G28476T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-02"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1282/2020|MW153048.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "G6650T,T7034C,T18974G" }, +"mutations": { "nuc" : [ "G6650T","T7034C","T18974G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "417", +"branch_attrs": { + "labels": { "nuc mutations": "C4084T" }, +"mutations": { "nuc" : [ "C4084T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.143"}}, +"children":[ { +"name": "IND/GBRC128/2020|MT539172.1|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "G5572T" }, +"mutations": { "nuc" : [ "G5572T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-05-02"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC123/2020|MT539176.1|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "G5194T,C22326T" }, +"mutations": { "nuc" : [ "G5194T","C22326T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-02"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "418", +"branch_attrs": { + "labels": { "nuc mutations": "A544G,C17104T" }, +"mutations": { "nuc" : [ "A544G","C17104T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.187"}}, +"children":[ { +"name": "POL/PL_MCB_32/2020|MW273814.1|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C1594T,A3090T,C23635T" }, +"mutations": { "nuc" : [ "C1594T","A3090T","C23635T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "POL/PL_MCB_75/2020|MW273857.1|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-16"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "419", +"branch_attrs": { + "labels": { "nuc mutations": "G20275A" }, +"mutations": { "nuc" : [ "G20275A" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.414"}}, +"children":[ { +"name": "England/CAMB-7BED9/2020|20-04-04", +"branch_attrs": { + "labels": { "nuc mutations": "A6672G,C10641T" }, +"mutations": { "nuc" : [ "A6672G","C10641T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-04-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_302/2020|LR878041.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "A3058G" }, +"mutations": { "nuc" : [ "A3058G" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-04-01"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "420", +"branch_attrs": { + "labels": { "nuc mutations": "C13862T,C28836T" }, +"mutations": { "nuc" : [ "C13862T","C28836T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.93"}}, +"children":[ { +"name": "England/NORT-289814/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "C9165T,T21033C" }, +"mutations": { "nuc" : [ "C9165T","T21033C" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9ED57A/2020|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "A23796G,G23824T,C29095T" }, +"mutations": { "nuc" : [ "A23796G","G23824T","C29095T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "421", +"branch_attrs": { + "labels": { "nuc mutations": "G2282A,T9742C,C17639T" }, +"mutations": { "nuc" : [ "G2282A","T9742C","C17639T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.206"}}, +"children":[ { +"name": "USA/WI-UW-1385/2020|MW035549.1|20-09-06", +"branch_attrs": { + "labels": { "nuc mutations": "C18508T,G19174T,G24883T,C26370T,C28868T" }, +"mutations": { "nuc" : [ "C18508T","G19174T","G24883T","C26370T","C28868T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0975/2020|MW217385.1|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "G20160T" }, +"mutations": { "nuc" : [ "G20160T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "422", +"branch_attrs": { + "labels": { "nuc mutations": "C28603T,G28899T" }, +"mutations": { "nuc" : [ "C28603T","G28899T" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.390"}}, +"children":[ { +"name": "USA/MA_MGH_00165/2020|MT520528.1|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "C10279T,C12132T,T16077C,T20401C" }, +"mutations": { "nuc" : [ "C10279T","C12132T","T16077C","T20401C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00711/2020|MT520198.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "A2104G,T21656C,G25244C" }, +"mutations": { "nuc" : [ "A2104G","T21656C","G25244C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "423", +"branch_attrs": { + "labels": { "nuc mutations": "C23422T,T23849C,C29686T" }, +"mutations": { "nuc" : [ "C23422T","T23849C","C29686T" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.69"}}, +"children":[ { +"name": "Scotland/CVR129/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "G29227A" }, +"mutations": { "nuc" : [ "G29227A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR52/2020|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "C25667T" }, +"mutations": { "nuc" : [ "C25667T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-14"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "424", +"branch_attrs": { + "labels": { "nuc mutations": "G3338T,C3511T,A22301G,G29508A" }, +"mutations": { "nuc" : [ "G3338T","C3511T","A22301G","G29508A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.77"}}, +"children":[ { +"name": "England/ALDP-94D8D9/2020|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "C19698T,C27393T" }, +"mutations": { "nuc" : [ "C19698T","C27393T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9442D4/2020|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "T3616A,T23686C,T27634C" }, +"mutations": { "nuc" : [ "T3616A","T23686C","T27634C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "425", +"branch_attrs": { + "labels": { "nuc mutations": "G29422T" }, +"mutations": { "nuc" : [ "G29422T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.78"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-1022CB/2020|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "C1997T,C28708T" }, +"mutations": { "nuc" : [ "C1997T","C28708T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-25"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,G12311T,C12357T,C20148T,C27925A" }, +"mutations": { "nuc" : [ "C2509T","G12311T","C12357T","C20148T","C27925A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-27"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "426", +"branch_attrs": { + "labels": { "nuc mutations": "G28882A,G28883C" }, +"mutations": { "nuc" : [ "G28882A","G28883C" ] } + }, +"node_attrs": { + "div":6, "MAT_Clade_0": {"value": "20B"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "T241C" }, +"mutations": { "nuc" : [ "T241C" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-05-20"}, "country": {"value": "Poland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "427", +"branch_attrs": { + "labels": { "nuc mutations": "G28881A" }, +"mutations": { "nuc" : [ "G28881A" ] } + }, +"node_attrs": { + "div":7, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.119"}}, +"children":[ { +"name": "428", +"branch_attrs": { + "labels": { "nuc mutations": "C28887T" }, +"mutations": { "nuc" : [ "C28887T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "GRC/202_32984/2020|MT459870.1|20-03-12", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-12"}, "country": {"value": "GRC"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "GRC/208_33922/2020|MT459876.1|20-03-14", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-14"}, "country": {"value": "GRC"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/CAMC-947875/2020|20-07-13", +"branch_attrs": { + "labels": { "nuc mutations": "G25699T,G28884T,C28896T,C29738T" }, +"mutations": { "nuc" : [ "G25699T","G28884T","C28896T","C29738T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "429", +"branch_attrs": { + "labels": { "nuc mutations": "T19839C" }, +"mutations": { "nuc" : [ "T19839C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.4"}}, +"children":[ { +"name": "England/PORT-2D3B4F/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "C17410T,C18788T,G21830C,C27688T,G29742T" }, +"mutations": { "nuc" : [ "C17410T","C18788T","G21830C","C27688T","G29742T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/EXET-136EE8/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C4784T,C15720T,C23664T" }, +"mutations": { "nuc" : [ "C4784T","C15720T","C23664T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "430", +"branch_attrs": { + "labels": { "nuc mutations": "G3242A,G8120C,C21646T,A24205T,G28083T" }, +"mutations": { "nuc" : [ "G3242A","G8120C","C21646T","A24205T","G28083T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.74"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FB967/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C4927T,C15738T,C27527T" }, +"mutations": { "nuc" : [ "C4927T","C15738T","C27527T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-17"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-7A4BBB/2020|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2511T" }, +"mutations": { "nuc" : [ "C2511T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "431", +"branch_attrs": { + "labels": { "nuc mutations": "G242T,C18086T" }, +"mutations": { "nuc" : [ "G242T","C18086T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.158"}}, +"children":[ { +"name": "USA/WA-S2264/2020|MT831437.1|20-06-09", +"branch_attrs": { + "labels": { "nuc mutations": "T242G,C5020T" }, +"mutations": { "nuc" : [ "T242G","C5020T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1922/2020|MT831459.1|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "C12528A" }, +"mutations": { "nuc" : [ "C12528A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "432", +"branch_attrs": { + "labels": { "nuc mutations": "G25552T" }, +"mutations": { "nuc" : [ "G25552T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "433", +"branch_attrs": { + "labels": { "nuc mutations": "G11801A" }, +"mutations": { "nuc" : [ "G11801A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.289"}}, +"children":[ { +"name": "Wales/PHWC-360A7/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "T4330C,T24063C" }, +"mutations": { "nuc" : [ "T4330C","T24063C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-29"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-260AA/2020|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "T7168C" }, +"mutations": { "nuc" : [ "T7168C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-24"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "434", +"branch_attrs": { + "labels": { "nuc mutations": "A26332G,A28877T,G28878C" }, +"mutations": { "nuc" : [ "A26332G","A28877T","G28878C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.2"}}, +"children":[ { +"name": "England/BRIS-185470D/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12AF02/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "G27670T" }, +"mutations": { "nuc" : [ "G27670T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "435", +"branch_attrs": { + "labels": { "nuc mutations": "G10262A,C22995T,A27669G" }, +"mutations": { "nuc" : [ "G10262A","C22995T","A27669G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.3"}}, +"children":[ { +"name": "England/CAMB-83FF9/2020|20-04-25", +"branch_attrs": { + "labels": { "nuc mutations": "C8290T,C12242T" }, +"mutations": { "nuc" : [ "C8290T","C12242T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-75895/2020|20-03-18", +"branch_attrs": { + "labels": { "nuc mutations": "C4965T,C8956T" }, +"mutations": { "nuc" : [ "C4965T","C8956T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-03-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "436", +"branch_attrs": { + "labels": { "nuc mutations": "C28256T,C29784T" }, +"mutations": { "nuc" : [ "C28256T","C29784T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.290"}}, +"children":[ { +"name": "USA/WA-S2012/2020|MT831128.1|20-06-04", +"branch_attrs": { + "labels": { "nuc mutations": "T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T" }, +"mutations": { "nuc" : [ "T8559A","G8561A","T10190C","C10507T","C19145T","G27014T","T28256C","G28690T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-06-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1775/2020|MT834200.1|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "G13513A" }, +"mutations": { "nuc" : [ "G13513A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-01"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "437", +"branch_attrs": { + "labels": { "nuc mutations": "C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T" }, +"mutations": { "nuc" : [ "C14340T","G17551A","C18877T","A19167G","C19274A","G22017T","G23012A","G23868T","T26604C","C27213T","C28833T","G29527T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "R.1"}}, +"children":[ { +"name": "England/ALDP-B82A0D/2020|20-11-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4456T" }, +"mutations": { "nuc" : [ "C4456T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0664/2021|MW524034.1|21-01-04", +"branch_attrs": { + "labels": { "nuc mutations": "G8015A,C9803T,C25797T" }, +"mutations": { "nuc" : [ "G8015A","C9803T","C25797T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "438", +"branch_attrs": { + "labels": { "nuc mutations": "T25713C" }, +"mutations": { "nuc" : [ "T25713C" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.316"}}, +"children":[ { +"name": "England/MILK-11A5634/2021|21-01-29", +"branch_attrs": { + "labels": { "nuc mutations": "C683T,C11747T,G22022A,T24991A,T25039C" }, +"mutations": { "nuc" : [ "C683T","C11747T","G22022A","T24991A","T25039C" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12", +"branch_attrs": { + "labels": { "nuc mutations": "C5796T,C9360T" }, +"mutations": { "nuc" : [ "C5796T","C9360T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-12"}, "country": {"value": "GHA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "439", +"branch_attrs": { + "labels": { "nuc mutations": "A11839G" }, +"mutations": { "nuc" : [ "A11839G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.5"}}, +"children":[ { +"name": "England/LOND-D6EBE/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "C8293T,C16575T" }, +"mutations": { "nuc" : [ "C8293T","C16575T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-C88A2/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "T3037C,C5878T,C7735T,C10645T" }, +"mutations": { "nuc" : [ "T3037C","C5878T","C7735T","C10645T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "440", +"branch_attrs": { + "labels": { "nuc mutations": "A23756G" }, +"mutations": { "nuc" : [ "A23756G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.222"}}, +"children":[ { +"name": "USA/WA-S860/2020|MT642111.1|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "C4886T,C16178T" }, +"mutations": { "nuc" : [ "C4886T","C16178T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MD-MDH-0380/2020|MW292639.1|20-10-27", +"branch_attrs": { + "labels": { "nuc mutations": "T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C" }, +"mutations": { "nuc" : [ "T1169C","G3122T","C14491T","G21641T","G25644T","G26062A","C26270T","T27900C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "441", +"branch_attrs": { + "labels": { "nuc mutations": "C28905T" }, +"mutations": { "nuc" : [ "C28905T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.184"}}, +"children":[ { +"name": "England/QEUH-A0AFB4/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C" }, +"mutations": { "nuc" : [ "G210T","A7040T","C12534T","C21005T","T22588C","A25448G","G25595A","T27685C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-C48747/2020|20-12-12", +"branch_attrs": { + "labels": { "nuc mutations": "G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C" }, +"mutations": { "nuc" : [ "G872A","A2031G","C4320T","G7452T","A7863G","G12872A","A18468C","G23126T","A23586G","G24368C","G28451C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "442", +"branch_attrs": { + "labels": { "nuc mutations": "C3411T,A12519G,C21757T,G23593C,A23756T,G29751T" }, +"mutations": { "nuc" : [ "C3411T","A12519G","C21757T","G23593C","A23756T","G29751T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.85"}}, +"children":[ { +"name": "USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06", +"branch_attrs": { + "labels": { "nuc mutations": "G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T" }, +"mutations": { "nuc" : [ "G2324A","A3069G","C5777T","C12439T","T12703C","C17518A","C17762T","C18647T","T25577C","A28707T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "21-01-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15", +"branch_attrs": { + "labels": { "nuc mutations": "G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T" }, +"mutations": { "nuc" : [ "G1729A","T2545C","A5695G","G8131T","T11078C","C13724T","G19684A","G29628T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "21-01-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "443", +"branch_attrs": { + "labels": { "nuc mutations": "G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C" }, +"mutations": { "nuc" : [ "G3871T","C4999T","A5040G","G14371T","C15240T","G23012A","A25048G","G25166C" ] } + }, +"node_attrs": { + "div":22, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "R.2"}}, +"children":[ { +"name": "USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08", +"branch_attrs": { + "labels": { "nuc mutations": "C22264T" }, +"mutations": { "nuc" : [ "C22264T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA-MGH-03951/2021|MW617773.1|21-01-22", +"branch_attrs": { + "labels": { "nuc mutations": "T27824C" }, +"mutations": { "nuc" : [ "T27824C" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "444", +"branch_attrs": { + "labels": { "nuc mutations": "C6573T" }, +"mutations": { "nuc" : [ "C6573T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "445", +"branch_attrs": { + "labels": { "nuc mutations": "T2537G,G12191T,T16479C" }, +"mutations": { "nuc" : [ "T2537G","G12191T","T16479C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.232"}}, +"children":[ { +"name": "Switzerland/230051/2020|LR882355.1|20-08-04", +"branch_attrs": { + "labels": { "nuc mutations": "T7396C,C14120T,G25471T" }, +"mutations": { "nuc" : [ "T7396C","C14120T","G25471T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-04"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/MILK-9C729D/2020|20-09-12", +"branch_attrs": { + "labels": { "nuc mutations": "A6659G,C6883T,C13261T,C15774T" }, +"mutations": { "nuc" : [ "A6659G","C6883T","C13261T","C15774T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-12"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "446", +"branch_attrs": { + "labels": { "nuc mutations": "C25528T" }, +"mutations": { "nuc" : [ "C25528T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.8"}}, +"children":[ { +"name": "England/BRIS-12A70A/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C21077T" }, +"mutations": { "nuc" : [ "C21077T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-77F61/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G22299A" }, +"mutations": { "nuc" : [ "G22299A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "447", +"branch_attrs": { + "labels": { "nuc mutations": "C18115T" }, +"mutations": { "nuc" : [ "C18115T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.131"}}, +"children":[ { +"name": "England/PHEC-215FB/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "A5855G,C18110T,A27277G" }, +"mutations": { "nuc" : [ "A5855G","C18110T","A27277G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-1B7C1/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "448", +"branch_attrs": { + "labels": { "nuc mutations": "C27046T" }, +"mutations": { "nuc" : [ "C27046T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.257"}}, +"children":[ { +"name": "Switzerland/120182/2020|LR860799.1|20-04-27", +"branch_attrs": { + "labels": { "nuc mutations": "G13897T,C24621T,T26038C,G26550A,T27046C" }, +"mutations": { "nuc" : [ "G13897T","C24621T","T26038C","G26550A","T27046C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-27"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9545BA/2020|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C" }, +"mutations": { "nuc" : [ "T1623C","C3961T","C4577T","T7009A","C15010T","C15173T","C16568A","G17058T","C20474T","G20977T","C27143T","T28026C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-06-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "449", +"branch_attrs": { + "labels": { "nuc mutations": "T27264G" }, +"mutations": { "nuc" : [ "T27264G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.125"}}, +"children":[ { +"name": "England/ALDP-651C9D/2020|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C3698T,A28765T" }, +"mutations": { "nuc" : [ "C3698T","A28765T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3919/2020|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "A22330G" }, +"mutations": { "nuc" : [ "A22330G" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-21"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "450", +"branch_attrs": { + "labels": { "nuc mutations": "C1800A,C23854T,G25972A,G27842T" }, +"mutations": { "nuc" : [ "C1800A","C23854T","G25972A","G27842T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.203"}}, +"children":[ { +"name": "England/ALDP-9558ED/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "G2398A" }, +"mutations": { "nuc" : [ "G2398A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-286255/2020|20-09-16", +"branch_attrs": { + "labels": { "nuc mutations": "C5000T,C13883T,C18395T" }, +"mutations": { "nuc" : [ "C5000T","C13883T","C18395T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "451", +"branch_attrs": { + "labels": { "nuc mutations": "T11638C" }, +"mutations": { "nuc" : [ "T11638C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.71"}}, +"children":[ { +"name": "England/BRIS-12F78D/2020|20-03-10", +"branch_attrs": { + "labels": { "nuc mutations": "C25584A" }, +"mutations": { "nuc" : [ "C25584A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/100802/2020|LR824314.1|20-03-25", +"branch_attrs": { + "labels": { "nuc mutations": "C8389T,C29708T" }, +"mutations": { "nuc" : [ "C8389T","C29708T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-25"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "452", +"branch_attrs": { + "labels": { "nuc mutations": "C17678T" }, +"mutations": { "nuc" : [ "C17678T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.157"}}, +"children":[ { +"name": "England/NORT-282972/2020|20-03-27", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-03-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-80554/2020|20-04-09", +"branch_attrs": { + "labels": { "nuc mutations": "T3745C" }, +"mutations": { "nuc" : [ "T3745C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "453", +"branch_attrs": { + "labels": { "nuc mutations": "C21597T,C29144T" }, +"mutations": { "nuc" : [ "C21597T","C29144T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.63"}}, +"children":[ { +"name": "PHL/UPMNIH_C1/2020|MW243995.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T" }, +"mutations": { "nuc" : [ "C1869T","C4686T","A12820G","C13176T","T18513A","C18606T","C18981T","C19164T","G25166C","G28209T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-07"}, "country": {"value": "PHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PHL/COVID-6009/2020|MT919790.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "C3736T,T10771C,C13051T,C26305T" }, +"mutations": { "nuc" : [ "C3736T","T10771C","C13051T","C26305T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-18"}, "country": {"value": "PHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "454", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T" }, +"mutations": { "nuc" : [ "C1912T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.250"}}, +"children":[ { +"name": "England/PHEC-20E4C/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C7200T,C8290T" }, +"mutations": { "nuc" : [ "C7200T","C8290T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-283B7B/2020|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "T28118C,G29227A" }, +"mutations": { "nuc" : [ "T28118C","G29227A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "455", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T" }, +"mutations": { "nuc" : [ "C9430T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.189"}}, +"children":[ { +"name": "England/ALDP-95665B/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "G571A,G9575A,C10074T" }, +"mutations": { "nuc" : [ "G571A","G9575A","C10074T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7767B/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C23802T,C28045T" }, +"mutations": { "nuc" : [ "C23802T","C28045T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "456", +"branch_attrs": { + "labels": { "nuc mutations": "T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T" }, +"mutations": { "nuc" : [ "T1094C","C3429T","G8578T","C8917T","A10720G","G17280T","C18129T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.201"}}, +"children":[ { +"name": "England/CAMC-94328A/2020|20-07-25", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-9424A3/2020|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "457", +"branch_attrs": { + "labels": { "nuc mutations": "T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T" }, +"mutations": { "nuc" : [ "T760C","A1673G","C1884T","C16329T","C18120T","C18267T","C20762T","C22713T","C29296T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.238"}}, +"children":[ { +"name": "USA/MA-QDX-3180/2021|MW505247.1|21-01-05", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "21-01-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06", +"branch_attrs": { + "labels": { "nuc mutations": "G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T" }, +"mutations": { "nuc" : [ "G2086T","C11005A","C11195T","C16111T","C20936T","G27827A","A28624T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "21-01-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "458", +"branch_attrs": { + "labels": { "nuc mutations": "G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T" }, +"mutations": { "nuc" : [ "G3152A","G4255A","G4510T","C5884T","C6983T","C11308T","C13019T","A22155G","C29353T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.196"}}, +"children":[ { +"name": "England/MILK-A79D10/2020|20-10-15", +"branch_attrs": { + "labels": { "nuc mutations": "C4113T,T17214C,C19324A,G28044T" }, +"mutations": { "nuc" : [ "C4113T","T17214C","C19324A","G28044T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-148F95/2020|20-10-15", +"branch_attrs": { + "labels": { "nuc mutations": "C2644T,C9319T,G13348T,C19113A" }, +"mutations": { "nuc" : [ "C2644T","C9319T","G13348T","C19113A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "459", +"branch_attrs": { + "labels": { "nuc mutations": "T4711C,A6709G" }, +"mutations": { "nuc" : [ "T4711C","A6709G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.172"}}, +"children":[ { +"name": "USA/CA-CZB-1932/2020|MT750412.1|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C2842T,C18570T" }, +"mutations": { "nuc" : [ "C2842T","C18570T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-1885/2020|MT750387.1|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "C17125T" }, +"mutations": { "nuc" : [ "C17125T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "460", +"branch_attrs": { + "labels": { "nuc mutations": "G5539A,G21468A" }, +"mutations": { "nuc" : [ "G5539A","G21468A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.205"}}, +"children":[ { +"name": "USA/CA-CZB-2288/2020|MW036089.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "T1937C,A15820G,T22441G" }, +"mutations": { "nuc" : [ "T1937C","A15820G","T22441G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3891/2020|MW134292.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "C6578T,C16049T,G19872C,C26768T" }, +"mutations": { "nuc" : [ "C6578T","C16049T","G19872C","C26768T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "461", +"branch_attrs": { + "labels": { "nuc mutations": "C936T,G3259T" }, +"mutations": { "nuc" : [ "C936T","G3259T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.304"}}, +"children":[ { +"name": "USA/VA-DCLS-1485/2020|MW205988.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "C8326T,G21641T,C26681T" }, +"mutations": { "nuc" : [ "C8326T","G21641T","C26681T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-1212/2020|MW067767.1|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "A20860G,C28087T" }, +"mutations": { "nuc" : [ "A20860G","C28087T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "462", +"branch_attrs": { + "labels": { "nuc mutations": "C673T" }, +"mutations": { "nuc" : [ "C673T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.192"}}, +"children":[ { +"name": "USA/FL-BPHL-1506/2020|MW056153.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C379T,T4125C,C14220T,T25479A" }, +"mutations": { "nuc" : [ "C379T","T4125C","C14220T","T25479A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1469/2020|MW040679.1|20-05-09", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-05-09"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "463", +"branch_attrs": { + "labels": { "nuc mutations": "G9130T,T27319C,G28487A,C28868T" }, +"mutations": { "nuc" : [ "G9130T","T27319C","G28487A","C28868T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.39"}}, +"children":[ { +"name": "Switzerland/250060/2020|LR881882.1|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "G1186A,C3738T,C16111T,G29706T" }, +"mutations": { "nuc" : [ "G1186A","C3738T","C16111T","G29706T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-A77F0D/2020|20-10-12", +"branch_attrs": { + "labels": { "nuc mutations": "C6091T,G9389A,G12845A,C18713T,G24095T,G25249T" }, +"mutations": { "nuc" : [ "C6091T","G9389A","G12845A","C18713T","G24095T","G25249T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-10-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "464", +"branch_attrs": { + "labels": { "nuc mutations": "G443A,G28378T" }, +"mutations": { "nuc" : [ "G443A","G28378T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.174"}}, +"children":[ { +"name": "USA/CA-CZB-11677/2020|MW276577.1|20-08-16", +"branch_attrs": { + "labels": { "nuc mutations": "C21614T,C21855T,T23042C" }, +"mutations": { "nuc" : [ "C21614T","C21855T","T23042C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-16"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-13945/2020|MW565647.1|20-06-22", +"branch_attrs": { + "labels": { "nuc mutations": "T6579C" }, +"mutations": { "nuc" : [ "T6579C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-22"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "465", +"branch_attrs": { + "labels": { "nuc mutations": "G24781T,G29706T" }, +"mutations": { "nuc" : [ "G24781T","G29706T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.194"}}, +"children":[ { +"name": "466", +"branch_attrs": { + "labels": { "nuc mutations": "A20742C,C28087T,C28310T,A29521T,G29645T,T29706G" }, +"mutations": { "nuc" : [ "A20742C","C28087T","C28310T","A29521T","G29645T","T29706G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.240"}}, +"children":[ { +"name": "England/QEUH-9AE4E1/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C18267T,G29736T" }, +"mutations": { "nuc" : [ "C18267T","G29736T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-A180DE/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "A4764G,C21952T,G26257A" }, +"mutations": { "nuc" : [ "A4764G","C21952T","G26257A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/OXON-AEBC7/2020|20-04-12", +"branch_attrs": { + "labels": { "nuc mutations": "C9430T" }, +"mutations": { "nuc" : [ "C9430T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "467", +"branch_attrs": { + "labels": { "nuc mutations": "C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T" }, +"mutations": { "nuc" : [ "C829T","C1960T","C5301T","C13247T","C14937T","T18144C","C26681T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.138"}}, +"children":[ { +"name": "England/QEUH-96E27A/2020|20-08-20", +"branch_attrs": { + "labels": { "nuc mutations": "C936T,G25785T,G28857T" }, +"mutations": { "nuc" : [ "C936T","G25785T","G28857T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-74C001/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C21789T,G29779T" }, +"mutations": { "nuc" : [ "C21789T","G29779T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "468", +"branch_attrs": { + "labels": { "nuc mutations": "C9438T,G29777T" }, +"mutations": { "nuc" : [ "C9438T","G29777T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.38"}}, +"children":[ { +"name": "England/LOND-D4C6B/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "A8681G,C10369T" }, +"mutations": { "nuc" : [ "A8681G","C10369T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-164485/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "A16653G" }, +"mutations": { "nuc" : [ "A16653G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-02"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "469", +"branch_attrs": { + "labels": { "nuc mutations": "G922T,C6541T,C19983T" }, +"mutations": { "nuc" : [ "G922T","C6541T","C19983T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.155"}}, +"children":[ { +"name": "England/ALDP-5C701F/2020|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "T1863C,T19983C" }, +"mutations": { "nuc" : [ "T1863C","T19983C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-51F142/2020|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "470", +"branch_attrs": { + "labels": { "nuc mutations": "C3170T,C6336T,C27673T" }, +"mutations": { "nuc" : [ "C3170T","C6336T","C27673T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.145"}}, +"children":[ { +"name": "England/ALDP-955FAC/2020|20-06-08", +"branch_attrs": { + "labels": { "nuc mutations": "A2130T,C11572T,C19961T,G20006T,C25207T" }, +"mutations": { "nuc" : [ "A2130T","C11572T","C19961T","G20006T","C25207T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-49E391/2020|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "T26260G" }, +"mutations": { "nuc" : [ "T26260G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "471", +"branch_attrs": { + "labels": { "nuc mutations": "C6781T,C11916T,C19185T" }, +"mutations": { "nuc" : [ "C6781T","C11916T","C19185T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.128"}}, +"children":[ { +"name": "USA/CA-CZB-10287/2020|MW276300.1|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T" }, +"mutations": { "nuc" : [ "A2871C","C5575T","C8299T","C12400T","G24743A","G28086T","G28884T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-03"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3356/2020|MW134125.1|20-07-14", +"branch_attrs": { + "labels": { "nuc mutations": "A16920G,G25906T" }, +"mutations": { "nuc" : [ "A16920G","G25906T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-14"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "472", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,T9151C,C9693T,C13887T,T16456C,C23248T" }, +"mutations": { "nuc" : [ "C1912T","T9151C","C9693T","C13887T","T16456C","C23248T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.153"}}, +"children":[ { +"name": "England/LOND-126DFA5/2020|20-12-27", +"branch_attrs": { + "labels": { "nuc mutations": "C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T" }, +"mutations": { "nuc" : [ "C1457T","T10939C","G18292T","C21910T","A23324T","T27346C","C29741T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-4846A4/2020|20-10-24", +"branch_attrs": { + "labels": { "nuc mutations": "C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T" }, +"mutations": { "nuc" : [ "C1348T","G5830A","C17750T","G25552T","C27005T","G28884T","T28897C","G29260T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-24"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "473", +"branch_attrs": { + "labels": { "nuc mutations": "C10376T,C26208T" }, +"mutations": { "nuc" : [ "C10376T","C26208T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.160"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-10677D/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "G18148A" }, +"mutations": { "nuc" : [ "G18148A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-106740/2020|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "C11259T,C26681T" }, +"mutations": { "nuc" : [ "C11259T","C26681T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-14"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "474", +"branch_attrs": { + "labels": { "nuc mutations": "C26447T" }, +"mutations": { "nuc" : [ "C26447T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.261"}}, +"children":[ { +"name": "England/SHEF-C9FBB/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "C1190T,A25410C,C25831T,T26447C" }, +"mutations": { "nuc" : [ "C1190T","A25410C","C25831T","T26447C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LOND-D6531/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C2710T,T2872C,C3041A" }, +"mutations": { "nuc" : [ "C2710T","T2872C","C3041A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "475", +"branch_attrs": { + "labels": { "nuc mutations": "A27932G,G29705T" }, +"mutations": { "nuc" : [ "A27932G","G29705T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.165"}}, +"children":[ { +"name": "England/MILK-9705F4/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "C15045T" }, +"mutations": { "nuc" : [ "C15045T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9B6440/2020|20-08-28", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-08-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "476", +"branch_attrs": { + "labels": { "nuc mutations": "G25088T" }, +"mutations": { "nuc" : [ "G25088T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.28"}}, +"children":[ { +"name": "477", +"branch_attrs": { + "labels": { "nuc mutations": "A6319G,T26149C" }, +"mutations": { "nuc" : [ "A6319G","T26149C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-99D597/2020|20-08-30", +"branch_attrs": { + "labels": { "nuc mutations": "C6629T,C15720T,G27877T,G27996T,A29424T,G29688A" }, +"mutations": { "nuc" : [ "C6629T","C15720T","G27877T","G27996T","A29424T","G29688A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "478", +"branch_attrs": { + "labels": { "nuc mutations": "T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C" }, +"mutations": { "nuc" : [ "T733C","C2749T","C3828T","A5648C","A6613G","C12778T","C13860T","G17259T","C21614T","C21621A","C21638T","G21974T","G22132T","G23012A","A23063T","C23525T","C24642T","G28167A","C28512G","A28877T","G28878C" ] } + }, +"node_attrs": { + "div":31, "MAT_Clade_0": {"value": "20J/501Y.V3"}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "USA/MD-MDH-0841/2021|MW621433.1|21-01-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 31, "date": {"value": "21-01-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11", +"branch_attrs": { + "labels": { "nuc mutations": "G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T" }, +"mutations": { "nuc" : [ "G2664A","C6627T","C15352T","C16428T","C20703T","G21786T","A22812C","C28826T" ] } + }, +"node_attrs": { "div": 39, "date": {"value": "21-01-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "Scotland/EDB6515/2020|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-06-15"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "479", +"branch_attrs": { + "labels": { "nuc mutations": "C12053T" }, +"mutations": { "nuc" : [ "C12053T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "480", +"branch_attrs": { + "labels": { "nuc mutations": "C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T" }, +"mutations": { "nuc" : [ "C100T","T10667G","C11824T","G23012A","G28628T","G28975T","C29754T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "P.2"}}, +"children":[ { +"name": "England/NORW-222D0F/2020|20-12-20", +"branch_attrs": { + "labels": { "nuc mutations": "C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T" }, +"mutations": { "nuc" : [ "C2340T","T3766C","T12302C","A12964G","A27237G","G28077T","T28245C","C28892T" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-12-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-F72F49/2021|21-01-05", +"branch_attrs": { + "labels": { "nuc mutations": "C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T" }, +"mutations": { "nuc" : [ "C556T","C1628A","A8233G","T14313C","A17612G","C25117T","A25575G","C25613G","C28315T","G28378T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "481", +"branch_attrs": { + "labels": { "nuc mutations": "T22020C,G23628T,C25728T,G26063T" }, +"mutations": { "nuc" : [ "T22020C","G23628T","C25728T","G26063T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.143"}}, +"children":[ { +"name": "USA/FL-CDC-21490280/2021|MW667214.1|21-01-27", +"branch_attrs": { + "labels": { "nuc mutations": "G2155T,C6541T,C10029T,C20844T,A24775C,G28914T" }, +"mutations": { "nuc" : [ "G2155T","C6541T","C10029T","C20844T","A24775C","G28914T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "21-01-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/NY-CDC-21712201/2021|MW668883.1|21-02-04", +"branch_attrs": { + "labels": { "nuc mutations": "C6541T,C6606T,G11926A,G27933T,G27990A" }, +"mutations": { "nuc" : [ "C6541T","C6606T","G11926A","G27933T","G27990A" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "21-02-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "482", +"branch_attrs": { + "labels": { "nuc mutations": "C24904T,T25088G" }, +"mutations": { "nuc" : [ "C24904T","T25088G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.251"}}, +"children":[ { +"name": "England/NORW-EE34B/2020|20-03-24", +"branch_attrs": { + "labels": { "nuc mutations": "G18315A" }, +"mutations": { "nuc" : [ "G18315A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORW-E8693/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "C1348T,C3653T" }, +"mutations": { "nuc" : [ "C1348T","C3653T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "483", +"branch_attrs": { + "labels": { "nuc mutations": "T772C,A2869G,C10868T,G15652T,C29095T" }, +"mutations": { "nuc" : [ "T772C","A2869G","C10868T","G15652T","C29095T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.277"}}, +"children":[ { +"name": "England/QEUH-AD487C/2020|20-10-26", +"branch_attrs": { + "labels": { "nuc mutations": "C186T,C12025T,C28819T" }, +"mutations": { "nuc" : [ "C186T","C12025T","C28819T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B7B2C/2020|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "T14313C,G23438T" }, +"mutations": { "nuc" : [ "T14313C","G23438T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "484", +"branch_attrs": { + "labels": { "nuc mutations": "A11782G,T21570G,T25473C" }, +"mutations": { "nuc" : [ "A11782G","T21570G","T25473C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.241"}}, +"children":[ { +"name": "Switzerland/250070/2020|LR881870.1|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "C512T,T28297C" }, +"mutations": { "nuc" : [ "C512T","T28297C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-18"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B5344/2020|20-09-02", +"branch_attrs": { + "labels": { "nuc mutations": "C27641T,G28913T" }, +"mutations": { "nuc" : [ "C27641T","G28913T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "485", +"branch_attrs": { + "labels": { "nuc mutations": "A2576T,C5175T,C6401T" }, +"mutations": { "nuc" : [ "A2576T","C5175T","C6401T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.255"}}, +"children":[ { +"name": "England/ALDP-6839B9/2020|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "A27691T" }, +"mutations": { "nuc" : [ "A27691T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-07-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6BAB59/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C11620T,C22993T" }, +"mutations": { "nuc" : [ "C11620T","C22993T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "486", +"branch_attrs": { + "labels": { "nuc mutations": "C1427T" }, +"mutations": { "nuc" : [ "C1427T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.254"}}, +"children":[ { +"name": "FRA/Env-Di/2020|MT709105.1|20-05-14", +"branch_attrs": { + "labels": { "nuc mutations": "G3419A,G3871T,C13517T" }, +"mutations": { "nuc" : [ "G3419A","G3871T","C13517T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-14"}, "country": {"value": "FRA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC1786/2020|MT612326.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C6195T,C10969T,T17568C,G20679T,T28098C,C29722T" }, +"mutations": { "nuc" : [ "C6195T","C10969T","T17568C","G20679T","T28098C","C29722T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-27"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "487", +"branch_attrs": { + "labels": { "nuc mutations": "C12809T" }, +"mutations": { "nuc" : [ "C12809T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.105"}}, +"children":[ { +"name": "England/CAMB-7620F/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C4876T,T12809C" }, +"mutations": { "nuc" : [ "C4876T","T12809C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C4795T,C29171T" }, +"mutations": { "nuc" : [ "C4795T","C29171T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-15"}, "country": {"value": "TUR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "488", +"branch_attrs": { + "labels": { "nuc mutations": "C1471T" }, +"mutations": { "nuc" : [ "C1471T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.54"}}, +"children":[ { +"name": "Scotland/QEUH-96C6AD/2020|20-08-07", +"branch_attrs": { + "labels": { "nuc mutations": "C19524T,C20759T,G25088T,C26912T,C28292A,C29739T" }, +"mutations": { "nuc" : [ "C19524T","C20759T","G25088T","C26912T","C28292A","C29739T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-07"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/270108/2020|LR882077.1|20-09-03", +"branch_attrs": { + "labels": { "nuc mutations": "G2782T,C15251A,C21034T,C21590T,G23302A" }, +"mutations": { "nuc" : [ "G2782T","C15251A","C21034T","C21590T","G23302A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-03"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "489", +"branch_attrs": { + "labels": { "nuc mutations": "G25912T" }, +"mutations": { "nuc" : [ "G25912T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.274"}}, +"children":[ { +"name": "England/PHEC-1DF03/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C18568T,G24348T" }, +"mutations": { "nuc" : [ "C18568T","G24348T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AB21F/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "C6385T,C12880T" }, +"mutations": { "nuc" : [ "C6385T","C12880T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "490", +"branch_attrs": { + "labels": { "nuc mutations": "T22843C" }, +"mutations": { "nuc" : [ "T22843C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.180"}}, +"children":[ { +"name": "USA/FL-BPHL-0838/2020|MT890317.1|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "T28010A,T28127C" }, +"mutations": { "nuc" : [ "T28010A","T28127C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1607/2020|MW166073.1|20-07-28", +"branch_attrs": { + "labels": { "nuc mutations": "C18652T" }, +"mutations": { "nuc" : [ "C18652T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "491", +"branch_attrs": { + "labels": { "nuc mutations": "G3323T,C10369T,G18674A" }, +"mutations": { "nuc" : [ "G3323T","C10369T","G18674A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.286"}}, +"children":[ { +"name": "England/QEUH-9DE381/2020|20-09-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G" }, +"mutations": { "nuc" : [ "C5183T","C9246T","C9891T","C17125T","G19480T","T26409C","C27418T","A28860G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-95E7D8/2020|20-08-06", +"branch_attrs": { + "labels": { "nuc mutations": "C14177T,C25553T,C28121T" }, +"mutations": { "nuc" : [ "C14177T","C25553T","C28121T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "492", +"branch_attrs": { + "labels": { "nuc mutations": "A2526C,C10440T,T25316C" }, +"mutations": { "nuc" : [ "A2526C","C10440T","T25316C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.55"}}, +"children":[ { +"name": "England/NOTT-111E3E/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "G199T,C9474T,C17163T,G25186T,G29688T" }, +"mutations": { "nuc" : [ "G199T","C9474T","C17163T","G25186T","G29688T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NOTT-111117/2020|20-05-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "493", +"branch_attrs": { + "labels": { "nuc mutations": "T13827C,G18756T" }, +"mutations": { "nuc" : [ "T13827C","G18756T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.95"}}, +"children":[ { +"name": "England/ALDP-68EFBC/2020|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "C23430T" }, +"mutations": { "nuc" : [ "C23430T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-91F278/2020|20-06-23", +"branch_attrs": { + "labels": { "nuc mutations": "A5695G,C10116T,C23855T" }, +"mutations": { "nuc" : [ "A5695G","C10116T","C23855T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "494", +"branch_attrs": { + "labels": { "nuc mutations": "C4113T,G21974C,C23191T" }, +"mutations": { "nuc" : [ "C4113T","G21974C","C23191T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.186"}}, +"children":[ { +"name": "USA/GA-CDC-6435/2020|MT967964.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "C1347T,C6190T,C11758T,C12741T" }, +"mutations": { "nuc" : [ "C1347T","C6190T","C11758T","C12741T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-1202/2020|MW035373.1|20-08-06", +"branch_attrs": { + "labels": { "nuc mutations": "C23910T,G27327T,G28690T" }, +"mutations": { "nuc" : [ "C23910T","G27327T","G28690T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "495", +"branch_attrs": { + "labels": { "nuc mutations": "G3230A,T24076A" }, +"mutations": { "nuc" : [ "G3230A","T24076A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.275"}}, +"children":[ { +"name": "England/PHEC-16F19/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C4570A" }, +"mutations": { "nuc" : [ "C4570A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/GSTT-265D4DF/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "496", +"branch_attrs": { + "labels": { "nuc mutations": "C4391A,C15848T,T19893C" }, +"mutations": { "nuc" : [ "C4391A","C15848T","T19893C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.253"}}, +"children":[ { +"name": "England/LIVE-A2765/2020|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "C16084T,C19185T,C26625T" }, +"mutations": { "nuc" : [ "C16084T","C19185T","C26625T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-658C87/2020|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "C1263T,G19254T,C25889T" }, +"mutations": { "nuc" : [ "C1263T","G19254T","C25889T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "497", +"branch_attrs": { + "labels": { "nuc mutations": "C1420T" }, +"mutations": { "nuc" : [ "C1420T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.83"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-1038B9/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "G25947C,C28312T" }, +"mutations": { "nuc" : [ "G25947C","C28312T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-16"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-FCE85/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C12747T,G18028T" }, +"mutations": { "nuc" : [ "C12747T","G18028T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-28"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "498", +"branch_attrs": { + "labels": { "nuc mutations": "C19366T" }, +"mutations": { "nuc" : [ "C19366T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.81"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FBB52/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "C26270T" }, +"mutations": { "nuc" : [ "C26270T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-13"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-FAC7E/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "C6114T" }, +"mutations": { "nuc" : [ "C6114T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-15"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "499", +"branch_attrs": { + "labels": { "nuc mutations": "G10097A,C23731T" }, +"mutations": { "nuc" : [ "G10097A","C23731T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.1"}}, +"children":[ { +"name": "England/NORT-283BE4/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "C24026T" }, +"mutations": { "nuc" : [ "C24026T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "500", +"branch_attrs": { + "labels": { "nuc mutations": "C4002T,C13536T" }, +"mutations": { "nuc" : [ "C4002T","C13536T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": "20D"}, "MAT_Clade_1": {"value": "C.6"}}, +"children":[ { +"name": "England/CAMB-81070/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C4698T" }, +"mutations": { "nuc" : [ "C4698T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "501", +"branch_attrs": { + "labels": { "nuc mutations": "T28110C" }, +"mutations": { "nuc" : [ "T28110C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/CAMB-72B44/2020|20-03-22", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-822D3/2020|20-04-12", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "502", +"branch_attrs": { + "labels": { "nuc mutations": "G2447T,G22199T" }, +"mutations": { "nuc" : [ "G2447T","G22199T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.3"}}, +"children":[ { +"name": "England/ALDP-94DD07/2020|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "G3164T,C7528T,G20569T,C29625T" }, +"mutations": { "nuc" : [ "G3164T","C7528T","G20569T","C29625T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-49EC3C/2020|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "G29392T,C29541T" }, +"mutations": { "nuc" : [ "G29392T","C29541T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "503", +"branch_attrs": { + "labels": { "nuc mutations": "G29179T" }, +"mutations": { "nuc" : [ "G29179T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.14"}}, +"children":[ { +"name": "PER/covper024/2020|MW030255.1|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C17436T,G27478T" }, +"mutations": { "nuc" : [ "C17436T","G27478T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-04"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "A10323G,G27160T" }, +"mutations": { "nuc" : [ "A10323G","G27160T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-08"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "504", +"branch_attrs": { + "labels": { "nuc mutations": "A21131G" }, +"mutations": { "nuc" : [ "A21131G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.13"}}, +"children":[ { +"name": "PER/covper011/2020|MW030242.1|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "C3768T,C14265T,G17721T,C27213T,C27513T" }, +"mutations": { "nuc" : [ "C3768T","C14265T","G17721T","C27213T","C27513T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-04"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/covper040/2020|MW030271.1|20-05-05", +"branch_attrs": { + "labels": { "nuc mutations": "C12854T,G20752T" }, +"mutations": { "nuc" : [ "C12854T","G20752T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-05"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "505", +"branch_attrs": { + "labels": { "nuc mutations": "C18747T" }, +"mutations": { "nuc" : [ "C18747T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.1"}}, +"children":[ { +"name": "England/MILK-B1553B/2020|20-10-23", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A" }, +"mutations": { "nuc" : [ "C2509T","G5029C","C6781T","G17027T","G20164A","G22992A","A23233G","T23629G","G25606T","G28048A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-66F889/2020|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "G14547A,G14869A,A24879G,C29421T" }, +"mutations": { "nuc" : [ "G14547A","G14869A","A24879G","C29421T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "506", +"branch_attrs": { + "labels": { "nuc mutations": "G3302A,C9693T,C11758T,C12789T,T22917G,G29422T" }, +"mutations": { "nuc" : [ "G3302A","C9693T","C11758T","C12789T","T22917G","G29422T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.16"}}, +"children":[ { +"name": "USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31", +"branch_attrs": { + "labels": { "nuc mutations": "A235C,T1921C,C22522T,C29259T" }, +"mutations": { "nuc" : [ "A235C","T1921C","C22522T","C29259T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "21-01-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LOND-12F65DC/2021|21-01-19", +"branch_attrs": { + "labels": { "nuc mutations": "G8591T,G15906T,A18594G,G23868T,G25906T,C26060T,G28079A,T28124C,T28723C,G29260T,G29543T" }, +"mutations": { "nuc" : [ "G8591T","G15906T","A18594G","G23868T","G25906T","C26060T","G28079A","T28124C","T28723C","G29260T","G29543T" ] } + }, +"node_attrs": { "div": 28, "date": {"value": "21-01-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "507", +"branch_attrs": { + "labels": { "nuc mutations": "G2995T,T4871C,C6449T,C10252T,C19366T,T27808C" }, +"mutations": { "nuc" : [ "G2995T","T4871C","C6449T","C10252T","C19366T","T27808C" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.5"}}, +"children":[ { +"name": "Switzerland/310500/2020|LR898805.1|20-10-08", +"branch_attrs": { + "labels": { "nuc mutations": "C9286T,G18210T,C21306T,G28541T" }, +"mutations": { "nuc" : [ "C9286T","G18210T","C21306T","G28541T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-10-08"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/300433/2020|LR898634.1|20-09-29", +"branch_attrs": { + "labels": { "nuc mutations": "G27382T" }, +"mutations": { "nuc" : [ "G27382T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-29"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "508", +"branch_attrs": { + "labels": { "nuc mutations": "T8323C,C10369T,T14345C,T15437C,G18292T,C25624T" }, +"mutations": { "nuc" : [ "T8323C","C10369T","T14345C","T15437C","G18292T","C25624T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.2"}}, +"children":[ { +"name": "England/QEUH-96BAA2/2020|20-08-14", +"branch_attrs": { + "labels": { "nuc mutations": "G1042T,C8895T,G25250T" }, +"mutations": { "nuc" : [ "G1042T","C8895T","G25250T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-08-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/ALDP-B19FFD/2020|20-11-01", +"branch_attrs": { + "labels": { "nuc mutations": "G922T,T10369C,A23064C,G23608T,C28453T,C29642T" }, +"mutations": { "nuc" : [ "G922T","T10369C","A23064C","G23608T","C28453T","C29642T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-11-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "509", +"branch_attrs": { + "labels": { "nuc mutations": "G24794T" }, +"mutations": { "nuc" : [ "G24794T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "C.4"}}, +"children":[ { +"name": "SRB/NS19622-16-06/2020|MW327528.1|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-15"}, "country": {"value": "SRB"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "PER/covper018/2020|MW030249.1|20-07-03", +"branch_attrs": { + "labels": { "nuc mutations": "G3755T,G11552T,A28356G" }, +"mutations": { "nuc" : [ "G3755T","G11552T","A28356G" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-03"}, "country": {"value": "PER"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "510", +"branch_attrs": { + "labels": { "nuc mutations": "C15656T,C25936T" }, +"mutations": { "nuc" : [ "C15656T","C25936T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.298"}}, +"children":[ { +"name": "DK/AD3_Farm1/2020|MT919525.1|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "A5421G,A22920T" }, +"mutations": { "nuc" : [ "A5421G","A22920T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-14"}, "country": {"value": "DK"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "DK/KL14_Farm1/2020|MT919536.1|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-17"}, "country": {"value": "DK"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "511", +"branch_attrs": { + "labels": { "nuc mutations": "A1630C,C27679T" }, +"mutations": { "nuc" : [ "A1630C","C27679T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.270"}}, +"children":[ { +"name": "England/BRIS-123EDF/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T" }, +"mutations": { "nuc" : [ "C2509T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-123F09/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "C9118T" }, +"mutations": { "nuc" : [ "C9118T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-08"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "512", +"branch_attrs": { + "labels": { "nuc mutations": "C3373A,C15960T" }, +"mutations": { "nuc" : [ "C3373A","C15960T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.247"}}, +"children":[ { +"name": "EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T" }, +"mutations": { "nuc" : [ "C3045T","A11305G","G16110A","C16428T","C18788T","G21786T","T22369C","A29521T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-20"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "513", +"branch_attrs": { + "labels": { "nuc mutations": "T15960C" }, +"mutations": { "nuc" : [ "T15960C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.292"}}, +"children":[ { +"name": "514", +"branch_attrs": { + "labels": { "nuc mutations": "C2706T,G9968T,G16647T,T23480G" }, +"mutations": { "nuc" : [ "C2706T","G9968T","G16647T","T23480G" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-02"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-02"}, "country": {"value": "EGY"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "Scotland/CVR41/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "C823T" }, +"mutations": { "nuc" : [ "C823T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "515", +"branch_attrs": { + "labels": { "nuc mutations": "G1820A,C6883T,G21724A,G28003C" }, +"mutations": { "nuc" : [ "G1820A","C6883T","G21724A","G28003C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.294"}}, +"children":[ { +"name": "516", +"branch_attrs": { + "labels": { "nuc mutations": "C12249T" }, +"mutations": { "nuc" : [ "C12249T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/CAMC-AEACFF/2020|20-10-25", +"branch_attrs": { + "labels": { "nuc mutations": "C3141T,C4683T,C8683T,C17690T,T19935C,C24130T,A27979G" }, +"mutations": { "nuc" : [ "C3141T","C4683T","C8683T","C17690T","T19935C","C24130T","A27979G" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-10-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "517", +"branch_attrs": { + "labels": { "nuc mutations": "G3431T,T25577C,C25626T,C27002T" }, +"mutations": { "nuc" : [ "G3431T","T25577C","C25626T","C27002T" ] } + }, +"node_attrs": { + "div":19, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "M.1"}}, +"children":[ { +"name": "England/PHEC-149FA3/2020|20-11-20", +"branch_attrs": { + "labels": { "nuc mutations": "G3433A,G8084A,C11941T,C18555T,A26174C" }, +"mutations": { "nuc" : [ "G3433A","G8084A","C11941T","C18555T","A26174C" ] } + }, +"node_attrs": { "div": 24, "date": {"value": "20-11-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-C9332B/2020|20-12-17", +"branch_attrs": { + "labels": { "nuc mutations": "G9314A,C13605T,G14490A" }, +"mutations": { "nuc" : [ "G9314A","C13605T","G14490A" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/MILK-9A699F/2020|20-09-01", +"branch_attrs": { + "labels": { "nuc mutations": "C1457T,G3286A,C8290T,C8626T,C9298T,C24378T,G26648A,C28657T" }, +"mutations": { "nuc" : [ "C1457T","G3286A","C8290T","C8626T","C9298T","C24378T","G26648A","C28657T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-09-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "518", +"branch_attrs": { + "labels": { "nuc mutations": "C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T" }, +"mutations": { "nuc" : [ "C643T","C4897T","C4898T","C9561T","G22349T","C25904T","C27920T" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.293"}}, +"children":[ { +"name": "England/CAMC-C3E586/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "C3736T,C6336T,G19735T,G23611T,C26735T,C26858T" }, +"mutations": { "nuc" : [ "C3736T","C6336T","G19735T","G23611T","C26735T","C26858T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-DE5550/2020|20-12-29", +"branch_attrs": { + "labels": { "nuc mutations": "G6320T,C10582T,C12194T,C25603T" }, +"mutations": { "nuc" : [ "G6320T","C10582T","C12194T","C25603T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "519", +"branch_attrs": { + "labels": { "nuc mutations": "C1437T,G29745T" }, +"mutations": { "nuc" : [ "C1437T","G29745T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.171"}}, +"children":[ { +"name": "England/ALDP-9ECEAD/2020|20-05-05", +"branch_attrs": { + "labels": { "nuc mutations": "C3874T,A6659G,T8008C,C27944T" }, +"mutations": { "nuc" : [ "C3874T","A6659G","T8008C","C27944T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12DC53/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "G4720A,A4928T" }, +"mutations": { "nuc" : [ "G4720A","A4928T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "520", +"branch_attrs": { + "labels": { "nuc mutations": "C2062T,C5184A,C13887T,C18687T,C23248T" }, +"mutations": { "nuc" : [ "C2062T","C5184A","C13887T","C18687T","C23248T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.170"}}, +"children":[ { +"name": "Scotland/QEUH-7B078B/2020|20-07-19", +"branch_attrs": { + "labels": { "nuc mutations": "G14055T,C19269T" }, +"mutations": { "nuc" : [ "G14055T","C19269T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-19"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-993EA5/2020|20-08-22", +"branch_attrs": { + "labels": { "nuc mutations": "C10252T,C16733T,G25595T" }, +"mutations": { "nuc" : [ "C10252T","C16733T","G25595T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "521", +"branch_attrs": { + "labels": { "nuc mutations": "C313T" }, +"mutations": { "nuc" : [ "C313T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.114"}}, +"children":[ { +"name": "England/BRIS-124C89/2020|20-03-26", +"branch_attrs": { + "labels": { "nuc mutations": "T313C,C29119T,C29585T" }, +"mutations": { "nuc" : [ "T313C","C29119T","C29585T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-UW-6243/2020|MT412316.1|20-04-02", +"branch_attrs": { + "labels": { "nuc mutations": "C3096T" }, +"mutations": { "nuc" : [ "C3096T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "522", +"branch_attrs": { + "labels": { "nuc mutations": "G4510A" }, +"mutations": { "nuc" : [ "G4510A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "523", +"branch_attrs": { + "labels": { "nuc mutations": "G15438T,G25785T" }, +"mutations": { "nuc" : [ "G15438T","G25785T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.50"}}, +"children":[ { +"name": "England/ALDP-A525BB/2020|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "C1758T,G18337T,G24757T,G28903T,G29260T" }, +"mutations": { "nuc" : [ "C1758T","G18337T","G24757T","G28903T","G29260T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ISR/NH_M2_0614/2020|MW194121.1|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "C541T,C1528T,C2836T,C8905T,A23125T,G28851T" }, +"mutations": { "nuc" : [ "C541T","C1528T","C2836T","C8905T","A23125T","G28851T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-06-14"}, "country": {"value": "ISR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "524", +"branch_attrs": { + "labels": { "nuc mutations": "G19480A" }, +"mutations": { "nuc" : [ "G19480A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.209"}}, +"children":[ { +"name": "England/MILK-A45AF8/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "G18985T,C21844T,T23084C,C25318T,G27358T" }, +"mutations": { "nuc" : [ "G18985T","C21844T","T23084C","C25318T","G27358T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-A613BF/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T" }, +"mutations": { "nuc" : [ "C1912T","C3619T","C4158T","G17259T","G21193T","C21846T","C25584T","C26060T","G27008T","G27827T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-13"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "525", +"branch_attrs": { + "labels": { "nuc mutations": "C9286T" }, +"mutations": { "nuc" : [ "C9286T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "526", +"branch_attrs": { + "labels": { "nuc mutations": "C19763T" }, +"mutations": { "nuc" : [ "C19763T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.47"}}, +"children":[ { +"name": "Switzerland/180039/2020|LR861669.1|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "C1912T,C10252T,C14178T" }, +"mutations": { "nuc" : [ "C1912T","C10252T","C14178T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-01"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/220022/2020|LR882244.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "C2062T,G6877T,T8082C,C13945T,C22687T" }, +"mutations": { "nuc" : [ "C2062T","G6877T","T8082C","C13945T","C22687T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-27"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "527", +"branch_attrs": { + "labels": { "nuc mutations": "T4346C,C10376T,C14708T,C28725T,G29692T" }, +"mutations": { "nuc" : [ "T4346C","C10376T","C14708T","C28725T","G29692T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.284"}}, +"children":[ { +"name": "Japan/TKYE627000_2020/2020|LC593811.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "C7728T" }, +"mutations": { "nuc" : [ "C7728T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Japan/TKYE624705_2020/2020|LC593810.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "A158G,C706T,C5974T,A26459G" }, +"mutations": { "nuc" : [ "A158G","C706T","C5974T","A26459G" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "528", +"branch_attrs": { + "labels": { "nuc mutations": "G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G" }, +"mutations": { "nuc" : [ "G10886A","G17278T","C18032T","G18105T","G18662C","C23625T","A25910G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.303"}}, +"children":[ { +"name": "England/QEUH-962E81/2020|20-08-10", +"branch_attrs": { + "labels": { "nuc mutations": "G24755T,A27973G" }, +"mutations": { "nuc" : [ "G24755T","A27973G" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96E605/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "C2841T" }, +"mutations": { "nuc" : [ "C2841T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "529", +"branch_attrs": { + "labels": { "nuc mutations": "G28396A" }, +"mutations": { "nuc" : [ "G28396A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.305"}}, +"children":[ { +"name": "England/QEUH-9F9265/2020|20-09-26", +"branch_attrs": { + "labels": { "nuc mutations": "C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T" }, +"mutations": { "nuc" : [ "C10156T","G13459T","G15380T","G16917T","C18252T","T22756C","C27741T","G29759T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-09-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-98EE43/2020|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "C2453T,G22918T,G27708T" }, +"mutations": { "nuc" : [ "C2453T","G22918T","G27708T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "530", +"branch_attrs": { + "labels": { "nuc mutations": "G1820A,C6541T" }, +"mutations": { "nuc" : [ "G1820A","C6541T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.215"}}, +"children":[ { +"name": "England/NORW-E8709/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "A9737G,A29242G" }, +"mutations": { "nuc" : [ "A9737G","A29242G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "A3740G,C12786T,C26333T" }, +"mutations": { "nuc" : [ "A3740G","C12786T","C26333T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-06"}, "country": {"value": "UnitedKingdom"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "531", +"branch_attrs": { + "labels": { "nuc mutations": "A11348G" }, +"mutations": { "nuc" : [ "A11348G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.113"}}, +"children":[ { +"name": "USA/ME-HETL-J0061/2020|MT886346.1|20-03-20", +"branch_attrs": { + "labels": { "nuc mutations": "G28690T" }, +"mutations": { "nuc" : [ "G28690T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-QDX-1599/2020|MW190335.1|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "G2534T,G9130A,G29422A" }, +"mutations": { "nuc" : [ "G2534T","G9130A","G29422A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "532", +"branch_attrs": { + "labels": { "nuc mutations": "C5700A" }, +"mutations": { "nuc" : [ "C5700A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.281"}}, +"children":[ { +"name": "England/QEUH-9600C9/2020|20-08-05", +"branch_attrs": { + "labels": { "nuc mutations": "C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T" }, +"mutations": { "nuc" : [ "C2113T","C6696T","G11761T","C14724T","C22450T","C25791T","C26894T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B92F8/2020|20-09-07", +"branch_attrs": { + "labels": { "nuc mutations": "C245T,G3250T,C11020T,C11109T,G16377T,C27874T" }, +"mutations": { "nuc" : [ "C245T","G3250T","C11020T","C11109T","G16377T","C27874T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "533", +"branch_attrs": { + "labels": { "nuc mutations": "T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T" }, +"mutations": { "nuc" : [ "T682C","C900T","G3259T","C4048T","C14937T","C17802T","C23604A","C24130T","C25721T","G25767T","G28903T" ] } + }, +"node_attrs": { + "div":20, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.179"}}, +"children":[ { +"name": "IND/GBRC455b/2020|MW600453.1|20-12-24", +"branch_attrs": { + "labels": { "nuc mutations": "G160T,T313C" }, +"mutations": { "nuc" : [ "G160T","T313C" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-12-24"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "IND/GBRC455a/2020|MW600436.1|20-12-24", +"branch_attrs": { + "labels": { "nuc mutations": "G160T" }, +"mutations": { "nuc" : [ "G160T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-12-24"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "534", +"branch_attrs": { + "labels": { "nuc mutations": "C823T" }, +"mutations": { "nuc" : [ "C823T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.285"}}, +"children":[ { +"name": "USA/FL-BPHL-0905/2020|MT966149.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "A8565C,A28847T" }, +"mutations": { "nuc" : [ "A8565C","A28847T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-24"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-0303/2020|MT757111.1|20-05-30", +"branch_attrs": { + "labels": { "nuc mutations": "A11023G" }, +"mutations": { "nuc" : [ "A11023G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "535", +"branch_attrs": { + "labels": { "nuc mutations": "C27128T" }, +"mutations": { "nuc" : [ "C27128T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.213"}}, +"children":[ { +"name": "England/CAMB-76490/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "G8171A,A16541G,A17730G" }, +"mutations": { "nuc" : [ "G8171A","A16541G","A17730G" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-03-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7CBD1/2020|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "G960T,G26589C" }, +"mutations": { "nuc" : [ "G960T","G26589C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "536", +"branch_attrs": { + "labels": { "nuc mutations": "C8917T,C18167T,G21518T,G28975T" }, +"mutations": { "nuc" : [ "C8917T","C18167T","G21518T","G28975T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.214"}}, +"children":[ { +"name": "Japan/TKYE630414_2020/2020|LC593818.1|20-08", +"branch_attrs": { + "labels": { "nuc mutations": "G27604A,C29679T" }, +"mutations": { "nuc" : [ "G27604A","C29679T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Japan/TKYE622411_2020/2020|LC593808.1|20-07", +"branch_attrs": { + "labels": { "nuc mutations": "G29773T" }, +"mutations": { "nuc" : [ "G29773T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "537", +"branch_attrs": { + "labels": { "nuc mutations": "G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T" }, +"mutations": { "nuc" : [ "G3056A","G11221T","G12514T","G17259T","C19089T","G23120T","A28338G","G29690T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.272"}}, +"children":[ { +"name": "England/MILK-A18C8F/2020|20-10-03", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-10-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-C3C1FD/2020|20-12-10", +"branch_attrs": { + "labels": { "nuc mutations": "C19264T,T22672C,A23869G,T28340C" }, +"mutations": { "nuc" : [ "C19264T","T22672C","A23869G","T28340C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-12-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "538", +"branch_attrs": { + "labels": { "nuc mutations": "G22627A,G28628T" }, +"mutations": { "nuc" : [ "G22627A","G28628T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.49"}}, +"children":[ { +"name": "Wales/PHWC-15E0B7/2020|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C1063T,G16117T,C27849T" }, +"mutations": { "nuc" : [ "C1063T","G16117T","C27849T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-30957/2020|20-04-08", +"branch_attrs": { + "labels": { "nuc mutations": "T11654C" }, +"mutations": { "nuc" : [ "T11654C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-08"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "539", +"branch_attrs": { + "labels": { "nuc mutations": "G25563C,G28178T" }, +"mutations": { "nuc" : [ "G25563C","G28178T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.283"}}, +"children":[ { +"name": "Japan/TKYVE11964_2020/2020|LC556322.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "G20134T,C24621A,G28300T" }, +"mutations": { "nuc" : [ "G20134T","C24621A","G28300T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04"}, "country": {"value": "Japan"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "LC573289.2|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "G2305T" }, +"mutations": { "nuc" : [ "G2305T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06"}, "country": {"value": "LC573289.2|20-06"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "540", +"branch_attrs": { + "labels": { "nuc mutations": "C2509T,C14724T,G24262T,G27703T" }, +"mutations": { "nuc" : [ "C2509T","C14724T","G24262T","G27703T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.181"}}, +"children":[ { +"name": "TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "G5015A" }, +"mutations": { "nuc" : [ "G5015A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-15"}, "country": {"value": "TUR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "G4148T,G5015A,C13620T,G28166A" }, +"mutations": { "nuc" : [ "G4148T","G5015A","C13620T","G28166A" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-15"}, "country": {"value": "TUR"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "541", +"branch_attrs": { + "labels": { "nuc mutations": "T27645A,G27666A" }, +"mutations": { "nuc" : [ "T27645A","G27666A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.139"}}, +"children":[ { +"name": "USA/CA-CZB-4049/2020|MW134382.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5979T,G29648T" }, +"mutations": { "nuc" : [ "C5979T","G29648T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-3294/2020|MW134115.1|20-07-20", +"branch_attrs": { + "labels": { "nuc mutations": "T14127C,T14745G,G19180T,G22154T" }, +"mutations": { "nuc" : [ "T14127C","T14745G","G19180T","G22154T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-20"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "542", +"branch_attrs": { + "labels": { "nuc mutations": "T29148C" }, +"mutations": { "nuc" : [ "T29148C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.314"}}, +"children":[ { +"name": "543", +"branch_attrs": { + "labels": { "nuc mutations": "G25793T,T27299C" }, +"mutations": { "nuc" : [ "G25793T","T27299C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.33"}}, +"children":[ { +"name": "544", +"branch_attrs": { + "labels": { "nuc mutations": "T25793G" }, +"mutations": { "nuc" : [ "T25793G" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "C28969T" }, +"mutations": { "nuc" : [ "C28969T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-08"}, "country": {"value": "BRA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WI-UW-114/2020|MT706234.1|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "A14330G,A27989G" }, +"mutations": { "nuc" : [ "A14330G","A27989G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-03-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "545", +"branch_attrs": { + "labels": { "nuc mutations": "C25916T,C29769T" }, +"mutations": { "nuc" : [ "C25916T","C29769T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "N.1"}}, +"children":[ { +"name": "USA/FL-BPHL-2014/2020|MW286586.1|20-06-19", +"branch_attrs": { + "labels": { "nuc mutations": "C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T" }, +"mutations": { "nuc" : [ "C3828T","C4456T","T6055C","G8131T","C13051T","C18647T","G21204T","C28367T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-06-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/MA_MGH_00693/2020|MT520290.1|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "T28360C" }, +"mutations": { "nuc" : [ "T28360C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "546", +"branch_attrs": { + "labels": { "nuc mutations": "A2475G" }, +"mutations": { "nuc" : [ "A2475G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "N.4"}}, +"children":[ { +"name": "CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C14805T" }, +"mutations": { "nuc" : [ "C14805T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-13"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C11750T,C18183T,C25731T" }, +"mutations": { "nuc" : [ "C11750T","C18183T","C25731T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-27"}, "country": {"value": "CHL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "547", +"branch_attrs": { + "labels": { "nuc mutations": "G26416T" }, +"mutations": { "nuc" : [ "G26416T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "N.3"}}, +"children":[ { +"name": "ARG/Cordoba-2858/2020|MW633904.1|20-09-14", +"branch_attrs": { + "labels": { "nuc mutations": "C2044T,C10626T,C11824T,A22052C,C26645T,C29555T" }, +"mutations": { "nuc" : [ "C2044T","C10626T","C11824T","A22052C","C26645T","C29555T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-14"}, "country": {"value": "ARG"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ARG/Cordoba-1484/2020|MW633909.1|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "C1663T,G3155T,A4485G,C5493T,G14020T,C27431T" }, +"mutations": { "nuc" : [ "C1663T","G3155T","A4485G","C5493T","G14020T","C27431T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-09-17"}, "country": {"value": "ARG"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/CAMB-74D5B/2020|20-03-19", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "England/LOND-D53CF/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G621A" }, +"mutations": { "nuc" : [ "G621A" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "548", +"branch_attrs": { + "labels": { "nuc mutations": "G18907T" }, +"mutations": { "nuc" : [ "G18907T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "549", +"branch_attrs": { + "labels": { "nuc mutations": "G18898T" }, +"mutations": { "nuc" : [ "G18898T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.61"}}, +"children":[ { +"name": "USA/CA-CZB-1871/2020|MT750377.1|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "G1323T,T18907G,C21772T" }, +"mutations": { "nuc" : [ "G1323T","T18907G","C21772T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-28"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2358/2020|MW036004.1|20-05-13", +"branch_attrs": { + "labels": { "nuc mutations": "C823T,C1457T,G3304T,A20055G,C22208T,C29095T" }, +"mutations": { "nuc" : [ "C823T","C1457T","G3304T","A20055G","C22208T","C29095T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "550", +"branch_attrs": { + "labels": { "nuc mutations": "C22314T,T24796C" }, +"mutations": { "nuc" : [ "C22314T","T24796C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.249"}}, +"children":[ { +"name": "Wales/PHWC-1645BF/2020|20-05-06", +"branch_attrs": { + "labels": { "nuc mutations": "C5192T,C12400T,C25710T,C28432T" }, +"mutations": { "nuc" : [ "C5192T","C12400T","C25710T","C28432T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-06"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-33C88/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "G6358A,A14328G,G29736A" }, +"mutations": { "nuc" : [ "G6358A","A14328G","G29736A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-17"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "551", +"branch_attrs": { + "labels": { "nuc mutations": "G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T" }, +"mutations": { "nuc" : [ "G6356A","C7113T","C8991T","T14238C","A18270C","T18989C","C21058T","C23525T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.98"}}, +"children":[ { +"name": "USA/WA-S2724/2020|MT947562.1|20-07-04", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2728/2020|MT947566.1|20-07-08", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "552", +"branch_attrs": { + "labels": { "nuc mutations": "G26615T" }, +"mutations": { "nuc" : [ "G26615T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.43"}}, +"children":[ { +"name": "Scotland/EDB5196/2020|20-05-18", +"branch_attrs": { + "labels": { "nuc mutations": "C13384T,A18902C,C27644A,A29767C" }, +"mutations": { "nuc" : [ "C13384T","A18902C","C27644A","A29767C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-18"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3185/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C16946T" }, +"mutations": { "nuc" : [ "C16946T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "553", +"branch_attrs": { + "labels": { "nuc mutations": "C17249T,G17722T" }, +"mutations": { "nuc" : [ "C17249T","G17722T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.150"}}, +"children":[ { +"name": "England/BRIS-127363/2020|20-04-24", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,G5572T,G12202T,T16521C" }, +"mutations": { "nuc" : [ "G174T","G5572T","G12202T","T16521C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-127A40/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "G2659T" }, +"mutations": { "nuc" : [ "G2659T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "554", +"branch_attrs": { + "labels": { "nuc mutations": "A10260G,A10880G" }, +"mutations": { "nuc" : [ "A10260G","A10880G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.187"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FB9C1/2020|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "G16197T,C24382T" }, +"mutations": { "nuc" : [ "G16197T","C24382T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-13"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-99DE32/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C2880T,A4044C,C6896T,A8413G,G19086T" }, +"mutations": { "nuc" : [ "C2880T","A4044C","C6896T","A8413G","G19086T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "555", +"branch_attrs": { + "labels": { "nuc mutations": "G2164A" }, +"mutations": { "nuc" : [ "G2164A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.164"}}, +"children":[ { +"name": "England/CAMB-83A9E/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G7761A,C14931T" }, +"mutations": { "nuc" : [ "G7761A","C14931T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/EXET-136ED9/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C8733T" }, +"mutations": { "nuc" : [ "C8733T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "556", +"branch_attrs": { + "labels": { "nuc mutations": "G3896T" }, +"mutations": { "nuc" : [ "G3896T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.200"}}, +"children":[ { +"name": "England/ALDP-955D39/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "G5629T,G19889T,C27673T" }, +"mutations": { "nuc" : [ "G5629T","G19889T","C27673T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/300258/2020|LR898536.1|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "C6701T,C12116T,C14352T,G17334T" }, +"mutations": { "nuc" : [ "C6701T","C12116T","C14352T","G17334T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-01"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "557", +"branch_attrs": { + "labels": { "nuc mutations": "C18713T" }, +"mutations": { "nuc" : [ "C18713T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.137"}}, +"children":[ { +"name": "England/SHEF-D1D3E/2020|20-04-22", +"branch_attrs": { + "labels": { "nuc mutations": "C21618T,C25047T,C29095T,G29747T" }, +"mutations": { "nuc" : [ "C21618T","C25047T","C29095T","G29747T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-CBE43/2020|20-04-26", +"branch_attrs": { + "labels": { "nuc mutations": "C11396T,C17676T" }, +"mutations": { "nuc" : [ "C11396T","C17676T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "558", +"branch_attrs": { + "labels": { "nuc mutations": "G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T" }, +"mutations": { "nuc" : [ "G625T","C13665T","C15960T","G16741T","C26464T","G29747T","C29750T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.227"}}, +"children":[ { +"name": "England/CAMC-949688/2020|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "T3694C,G20580T" }, +"mutations": { "nuc" : [ "T3694C","G20580T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-C3AED/2020|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "C401T,T1438C" }, +"mutations": { "nuc" : [ "C401T","T1438C" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "559", +"branch_attrs": { + "labels": { "nuc mutations": "A8072G" }, +"mutations": { "nuc" : [ "A8072G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.133"}}, +"children":[ { +"name": "England/ALDP-90D6AE/2020|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "A3776G,C21855T,G25166C,C25831T,C26111T,C26195T" }, +"mutations": { "nuc" : [ "A3776G","C21855T","G25166C","C25831T","C26111T","C26195T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "POL/PL_P12/2020|MT511068.1|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C106T,C8025T" }, +"mutations": { "nuc" : [ "C106T","C8025T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-31"}, "country": {"value": "POL"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "560", +"branch_attrs": { + "labels": { "nuc mutations": "T3873C,G3880A" }, +"mutations": { "nuc" : [ "T3873C","G3880A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.204"}}, +"children":[ { +"name": "England/MILK-ABBCCA/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "A14144G,T20196C,C23536A" }, +"mutations": { "nuc" : [ "A14144G","T20196C","C23536A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-ACCF27/2020|20-10-21", +"branch_attrs": { + "labels": { "nuc mutations": "C18131T,G26640T" }, +"mutations": { "nuc" : [ "C18131T","G26640T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "561", +"branch_attrs": { + "labels": { "nuc mutations": "C9120T,C18032T,C20233T,G24926T,A27674T,A29350G" }, +"mutations": { "nuc" : [ "C9120T","C18032T","C20233T","G24926T","A27674T","A29350G" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.302"}}, +"children":[ { +"name": "England/QEUH-99923A/2020|20-08-24", +"branch_attrs": { + "labels": { "nuc mutations": "G974A,C7267T" }, +"mutations": { "nuc" : [ "G974A","C7267T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-825C54/2020|20-07-16", +"branch_attrs": { + "labels": { "nuc mutations": "G680A,C14120T" }, +"mutations": { "nuc" : [ "G680A","C14120T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "562", +"branch_attrs": { + "labels": { "nuc mutations": "A20742C" }, +"mutations": { "nuc" : [ "A20742C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.297"}}, +"children":[ { +"name": "England/MILK-9E2BDD/2020|20-09-20", +"branch_attrs": { + "labels": { "nuc mutations": "A9337G,A27086T" }, +"mutations": { "nuc" : [ "A9337G","A27086T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-09-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-1088C3/2020|20-09-13", +"branch_attrs": { + "labels": { "nuc mutations": "C16260T,G25340T,C27684T" }, +"mutations": { "nuc" : [ "C16260T","G25340T","C27684T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-09-13"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "563", +"branch_attrs": { + "labels": { "nuc mutations": "T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T" }, +"mutations": { "nuc" : [ "T505C","G872T","C3261T","T7783C","A15984T","C20946T","C22075T","G25552T","C27945T","G28221T","C29750T" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.198"}}, +"children":[ { +"name": "England/MILK-99D755/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "T4303C,C25553T,G25599T" }, +"mutations": { "nuc" : [ "T4303C","C25553T","G25599T" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-99D764/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G20125A,G22484T" }, +"mutations": { "nuc" : [ "G20125A","G22484T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "564", +"branch_attrs": { + "labels": { "nuc mutations": "G569A,C5482T,G17944T,C18747T,A22182G" }, +"mutations": { "nuc" : [ "G569A","C5482T","G17944T","C18747T","A22182G" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.97"}}, +"children":[ { +"name": "England/ALDP-907D09/2020|20-06-22", +"branch_attrs": { + "labels": { "nuc mutations": "C20320T" }, +"mutations": { "nuc" : [ "C20320T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-85E3E4/2020|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "G2144T" }, +"mutations": { "nuc" : [ "G2144T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "565", +"branch_attrs": { + "labels": { "nuc mutations": "A2641G,C3622T,C25844T,C28087T" }, +"mutations": { "nuc" : [ "A2641G","C3622T","C25844T","C28087T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.256"}}, +"children":[ { +"name": "England/MILK-95862C/2020|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "G28557T" }, +"mutations": { "nuc" : [ "G28557T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-94EF88/2020|20-06-16", +"branch_attrs": { + "labels": { "nuc mutations": "C2106T,C12073T,C14676T,T20989C" }, +"mutations": { "nuc" : [ "C2106T","C12073T","C14676T","T20989C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "566", +"branch_attrs": { + "labels": { "nuc mutations": "G21624T" }, +"mutations": { "nuc" : [ "G21624T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.237"}}, +"children":[ { +"name": "England/PHEC-219E0/2020|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "T23227C" }, +"mutations": { "nuc" : [ "T23227C" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LEED-2AA59E/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C28969T" }, +"mutations": { "nuc" : [ "C28969T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "567", +"branch_attrs": { + "labels": { "nuc mutations": "T5465C,G24102A" }, +"mutations": { "nuc" : [ "T5465C","G24102A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.264"}}, +"children":[ { +"name": "Wales/PHWC-16578B/2020|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "A489G,G6387A,C19185T,A25800T,A25801T" }, +"mutations": { "nuc" : [ "A489G","G6387A","C19185T","A25800T","A25801T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-07"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-166104/2020|20-05-15", +"branch_attrs": { + "labels": { "nuc mutations": "T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T" }, +"mutations": { "nuc" : [ "T6025C","A9361T","G10255T","C13264T","G17572T","G19398A","G28703T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-15"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "568", +"branch_attrs": { + "labels": { "nuc mutations": "G18859T" }, +"mutations": { "nuc" : [ "G18859T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.279"}}, +"children":[ { +"name": "England/BRIS-125D67/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6347T" }, +"mutations": { "nuc" : [ "C6347T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12C841/2020|20-05-12", +"branch_attrs": { + "labels": { "nuc mutations": "A14691G,T19473C,T22325C" }, +"mutations": { "nuc" : [ "A14691G","T19473C","T22325C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "569", +"branch_attrs": { + "labels": { "nuc mutations": "G1874T,C8683T,C28093T" }, +"mutations": { "nuc" : [ "G1874T","C8683T","C28093T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.149"}}, +"children":[ { +"name": "England/ALDP-94D8F7/2020|20-06-20", +"branch_attrs": { + "labels": { "nuc mutations": "A9997C" }, +"mutations": { "nuc" : [ "A9997C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NOTT-111BFB/2020|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "G26426A" }, +"mutations": { "nuc" : [ "G26426A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "570", +"branch_attrs": { + "labels": { "nuc mutations": "A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C" }, +"mutations": { "nuc" : [ "A2641G","C9803A","A10786G","C10833T","C18687T","C25844T","T27811C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.86"}}, +"children":[ { +"name": "England/ALDP-95A754/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "T20764C" }, +"mutations": { "nuc" : [ "T20764C" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-95CEA8/2020|20-06-15", +"branch_attrs": { + "labels": { "nuc mutations": "C14931T" }, +"mutations": { "nuc" : [ "C14931T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-06-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "571", +"branch_attrs": { + "labels": { "nuc mutations": "T29464C" }, +"mutations": { "nuc" : [ "T29464C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.115"}}, +"children":[ { +"name": "572", +"branch_attrs": { + "labels": { "nuc mutations": "G26918T" }, +"mutations": { "nuc" : [ "G26918T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.235"}}, +"children":[ { +"name": "England/MILK-8664D7/2020|20-07-17", +"branch_attrs": { + "labels": { "nuc mutations": "C29733T" }, +"mutations": { "nuc" : [ "C29733T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-993300/2020|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "C8290T,C19367T,C23525T" }, +"mutations": { "nuc" : [ "C8290T","C19367T","C23525T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-08-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "573", +"branch_attrs": { + "labels": { "nuc mutations": "C7843T,G15438T,C25207T,C28453T" }, +"mutations": { "nuc" : [ "C7843T","G15438T","C25207T","C28453T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.146"}}, +"children":[ { +"name": "England/CAMC-947392/2020|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "T25949C" }, +"mutations": { "nuc" : [ "T25949C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-977469/2020|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "C2536T,T7843C,C8318A,T26160C" }, +"mutations": { "nuc" : [ "C2536T","T7843C","C8318A","T26160C" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-07-24"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "England/MILK-629D13/2020|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "G1820A,C11003T,T13417C,G22409T,C25896T,G25963A" }, +"mutations": { "nuc" : [ "G1820A","C11003T","T13417C","G22409T","C25896T","G25963A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "574", +"branch_attrs": { + "labels": { "nuc mutations": "G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G" }, +"mutations": { "nuc" : [ "G4181T","G5326T","C5694T","C5812T","C6573T","C16293T","G22021T","T23633G" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.234"}}, +"children":[ { +"name": "England/PORT-2F5752/2020|20-10-13", +"branch_attrs": { + "labels": { "nuc mutations": "C18329T,G20062T,C23185T" }, +"mutations": { "nuc" : [ "C18329T","G20062T","C23185T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-10-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96A4C3/2020|20-08-13", +"branch_attrs": { + "labels": { "nuc mutations": "G3403T,C5691T" }, +"mutations": { "nuc" : [ "G3403T","C5691T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "575", +"branch_attrs": { + "labels": { "nuc mutations": "A10948G" }, +"mutations": { "nuc" : [ "A10948G" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "576", +"branch_attrs": { + "labels": { "nuc mutations": "T9172C,G26730T" }, +"mutations": { "nuc" : [ "T9172C","G26730T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.207"}}, +"children":[ { +"name": "USA/VA-DCLS-1073/2020|MT981458.1|20-06", +"branch_attrs": { + "labels": { "nuc mutations": "T27846C,C29171T" }, +"mutations": { "nuc" : [ "T27846C","C29171T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-0120/2020|MT482111.1|20-04", +"branch_attrs": { + "labels": { "nuc mutations": "C10818T,C21998T" }, +"mutations": { "nuc" : [ "C10818T","C21998T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "577", +"branch_attrs": { + "labels": { "nuc mutations": "C6312A" }, +"mutations": { "nuc" : [ "C6312A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.41"}}, +"children":[ { +"name": "Wales/PHWC-162751/2020|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "G18538T,A20136G" }, +"mutations": { "nuc" : [ "G18538T","A20136G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-05-27"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-497D12/2020|20-06-03", +"branch_attrs": { + "labels": { "nuc mutations": "T3334A,A6375G,G24926T,C25665T" }, +"mutations": { "nuc" : [ "T3334A","A6375G","G24926T","C25665T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-03"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "578", +"branch_attrs": { + "labels": { "nuc mutations": "G20931A" }, +"mutations": { "nuc" : [ "G20931A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.173"}}, +"children":[ { +"name": "England/SHEF-C13B7/2020|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "G10870T,C15315T" }, +"mutations": { "nuc" : [ "G10870T","C15315T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-10B2E79/2020|20-05-16", +"branch_attrs": { + "labels": { "nuc mutations": "A9272C,G26416T" }, +"mutations": { "nuc" : [ "A9272C","G26416T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "579", +"branch_attrs": { + "labels": { "nuc mutations": "C6582T" }, +"mutations": { "nuc" : [ "C6582T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.134"}}, +"children":[ { +"name": "England/OXON-AEF9E/2020|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C140T,T6582A" }, +"mutations": { "nuc" : [ "C140T","T6582A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-162E7A/2020|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "C5497T" }, +"mutations": { "nuc" : [ "C5497T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-19"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "580", +"branch_attrs": { + "labels": { "nuc mutations": "C12488T,C25528T,G27084A" }, +"mutations": { "nuc" : [ "C12488T","C25528T","G27084A" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.287"}}, +"children":[ { +"name": "USA/WI-UW-982/2020|MT846668.1|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "G17964T,G22801T" }, +"mutations": { "nuc" : [ "G17964T","G22801T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "A22108G,C28344T" }, +"mutations": { "nuc" : [ "A22108G","C28344T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "581", +"branch_attrs": { + "labels": { "nuc mutations": "A25505C" }, +"mutations": { "nuc" : [ "A25505C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.231"}}, +"children":[ { +"name": "USA/FL-QDX-228/2020|MT806770.1|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "G675T,C4456T,A21625G" }, +"mutations": { "nuc" : [ "G675T","C4456T","A21625G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/VA-DCLS-0920/2020|MT929088.1|20-05", +"branch_attrs": { + "labels": { "nuc mutations": "C8664A,G8851A,C19983T,G29755T" }, +"mutations": { "nuc" : [ "C8664A","G8851A","C19983T","G29755T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "582", +"branch_attrs": { + "labels": { "nuc mutations": "C21637T,A28169G" }, +"mutations": { "nuc" : [ "C21637T","A28169G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.37"}}, +"children":[ { +"name": "England/ALDP-71D072/2020|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "T26156C" }, +"mutations": { "nuc" : [ "T26156C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9573DB/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "T9292C,C21910T" }, +"mutations": { "nuc" : [ "T9292C","C21910T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "583", +"branch_attrs": { + "labels": { "nuc mutations": "G25617T" }, +"mutations": { "nuc" : [ "G25617T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.151"}}, +"children":[ { +"name": "England/ALDP-954C6A/2020|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "G27857T" }, +"mutations": { "nuc" : [ "G27857T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A524EB/2020|20-10-07", +"branch_attrs": { + "labels": { "nuc mutations": "C3099T,C17678T,G19816A,C25728T" }, +"mutations": { "nuc" : [ "C3099T","C17678T","G19816A","C25728T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-10-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "584", +"branch_attrs": { + "labels": { "nuc mutations": "G1590T,A11120G" }, +"mutations": { "nuc" : [ "G1590T","A11120G" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.308"}}, +"children":[ { +"name": "England/ALDP-9D9104/2020|20-09-18", +"branch_attrs": { + "labels": { "nuc mutations": "C2462A,C10615T,G27047T" }, +"mutations": { "nuc" : [ "C2462A","C10615T","G27047T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-A40F67/2020|20-10-06", +"branch_attrs": { + "labels": { "nuc mutations": "A12529G" }, +"mutations": { "nuc" : [ "A12529G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-10-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "585", +"branch_attrs": { + "labels": { "nuc mutations": "G11230T,G11401T,T24088C" }, +"mutations": { "nuc" : [ "G11230T","G11401T","T24088C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.311"}}, +"children":[ { +"name": "Scotland/QEUH-A00DF0/2020|20-10-02", +"branch_attrs": { + "labels": { "nuc mutations": "A11546G,C29730G" }, +"mutations": { "nuc" : [ "A11546G","C29730G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-10-02"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9CC5BD/2020|20-09-15", +"branch_attrs": { + "labels": { "nuc mutations": "C11224T,G28307C" }, +"mutations": { "nuc" : [ "C11224T","G28307C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-09-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "586", +"branch_attrs": { + "labels": { "nuc mutations": "C835T" }, +"mutations": { "nuc" : [ "C835T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.309"}}, +"children":[ { +"name": "England/QEUH-9B6EAC/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "A29700G" }, +"mutations": { "nuc" : [ "A29700G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-2A4CAE/2020|20-09-17", +"branch_attrs": { + "labels": { "nuc mutations": "C27945T" }, +"mutations": { "nuc" : [ "C27945T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-09-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "587", +"branch_attrs": { + "labels": { "nuc mutations": "A6900G" }, +"mutations": { "nuc" : [ "A6900G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.310"}}, +"children":[ { +"name": "Northern_Ireland/NIRE-FB3A5/2020|20-08-29", +"branch_attrs": { + "labels": { "nuc mutations": "A3801G,C26985T" }, +"mutations": { "nuc" : [ "A3801G","C26985T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-29"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Northern_Ireland/NIRE-FB369/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G25456T" }, +"mutations": { "nuc" : [ "G25456T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-31"}, "country": {"value": "Northern_Ireland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "588", +"branch_attrs": { + "labels": { "nuc mutations": "C2638T" }, +"mutations": { "nuc" : [ "C2638T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.59"}}, +"children":[ { +"name": "Wales/ALDP-6C3E72/2020|20-07-01", +"branch_attrs": { + "labels": { "nuc mutations": "C13329T,C29675T" }, +"mutations": { "nuc" : [ "C13329T","C29675T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-01"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-5A15D0/2020|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "G6589A,A22528G" }, +"mutations": { "nuc" : [ "G6589A","A22528G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "589", +"branch_attrs": { + "labels": { "nuc mutations": "G21724T" }, +"mutations": { "nuc" : [ "G21724T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "590", +"branch_attrs": { + "labels": { "nuc mutations": "G11230T,G23587C" }, +"mutations": { "nuc" : [ "G11230T","G23587C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.260"}}, +"children":[ { +"name": "England/LEED-2AA4EC/2020|20-04-06", +"branch_attrs": { + "labels": { "nuc mutations": "C22326T,C27128T" }, +"mutations": { "nuc" : [ "C22326T","C27128T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-06"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/LEED-2AA394/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C20941T" }, +"mutations": { "nuc" : [ "C20941T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "591", +"branch_attrs": { + "labels": { "nuc mutations": "T7792C" }, +"mutations": { "nuc" : [ "T7792C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.199"}}, +"children":[ { +"name": "England/BRIS-1854318/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C4780T,G22468T" }, +"mutations": { "nuc" : [ "C4780T","G22468T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12E6FA/2020|20-04-20", +"branch_attrs": { + "labels": { "nuc mutations": "C14676T,C17119T" }, +"mutations": { "nuc" : [ "C14676T","C17119T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "592", +"branch_attrs": { + "labels": { "nuc mutations": "G17302T,C25046T" }, +"mutations": { "nuc" : [ "G17302T","C25046T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.259"}}, +"children":[ { +"name": "England/WSFT-25C13CB/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PORT-2F5D9C/2020|20-06-05", +"branch_attrs": { + "labels": { "nuc mutations": "A5277G" }, +"mutations": { "nuc" : [ "A5277G" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "593", +"branch_attrs": { + "labels": { "nuc mutations": "C222T,C21780T" }, +"mutations": { "nuc" : [ "C222T","C21780T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.16"}}, +"children":[ { +"name": "Wales/PHWC-16881C/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C19602T,G29779A" }, +"mutations": { "nuc" : [ "C19602T","G29779A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-21"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-3612C/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C7932T,C8964T,C13274T,C14097T" }, +"mutations": { "nuc" : [ "C7932T","C8964T","C13274T","C14097T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-04-28"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "594", +"branch_attrs": { + "labels": { "nuc mutations": "C20474T" }, +"mutations": { "nuc" : [ "C20474T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.148"}}, +"children":[ { +"name": "England/PHEC-20B81/2020|20-04-16", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-16"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-992E97/2020|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "A5128G,T6376A,C16329T,G25012A,C25728T,C27509T" }, +"mutations": { "nuc" : [ "A5128G","T6376A","C16329T","G25012A","C25728T","C27509T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-08-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "595", +"branch_attrs": { + "labels": { "nuc mutations": "T3163C" }, +"mutations": { "nuc" : [ "T3163C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.12"}}, +"children":[ { +"name": "England/QEUH-95DD9B/2020|20-08-07", +"branch_attrs": { + "labels": { "nuc mutations": "C2113T,T27856G" }, +"mutations": { "nuc" : [ "C2113T","T27856G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9570D4/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "C7768T" }, +"mutations": { "nuc" : [ "C7768T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "596", +"branch_attrs": { + "labels": { "nuc mutations": "C3737T,A3959G,C11758T,G12769T,G25785T,G29402T" }, +"mutations": { "nuc" : [ "C3737T","A3959G","C11758T","G12769T","G25785T","G29402T" ] } + }, +"node_attrs": { + "div":13, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.229"}}, +"children":[ { +"name": "ITA/APU-POLBA09/2020|MW485806.1|20-08-26", +"branch_attrs": { + "labels": { "nuc mutations": "C4551T,G20238T" }, +"mutations": { "nuc" : [ "C4551T","G20238T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-26"}, "country": {"value": "ITA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "DV_IZSPB_236_S50|LR992121.1|20-08-29", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-29"}, "country": {"value": "DV_IZSPB_236_S50|LR992121.1|20-08-29"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "597", +"branch_attrs": { + "labels": { "nuc mutations": "G1210T,G9802T,G12067T" }, +"mutations": { "nuc" : [ "G1210T","G9802T","G12067T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.307"}}, +"children":[ { +"name": "England/SHEF-C184F/2020|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "G12907A,C13667T,C22450T,G25687A,T29785A" }, +"mutations": { "nuc" : [ "G12907A","C13667T","C22450T","G25687A","T29785A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9D8FFC/2020|20-09-18", +"branch_attrs": { + "labels": { "nuc mutations": "T20613C" }, +"mutations": { "nuc" : [ "T20613C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-09-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "598", +"branch_attrs": { + "labels": { "nuc mutations": "C3177T,G22093A" }, +"mutations": { "nuc" : [ "C3177T","G22093A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.168"}}, +"children":[ { +"name": "England/NORT-28B1EA/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "C27741T" }, +"mutations": { "nuc" : [ "C27741T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-28B28D/2020|20-04-18", +"branch_attrs": { + "labels": { "nuc mutations": "A8734G" }, +"mutations": { "nuc" : [ "A8734G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "599", +"branch_attrs": { + "labels": { "nuc mutations": "G10265A" }, +"mutations": { "nuc" : [ "G10265A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "600", +"branch_attrs": { + "labels": { "nuc mutations": "T13794G" }, +"mutations": { "nuc" : [ "T13794G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.300"}}, +"children":[ { +"name": "England/ALDP-5D52BE/2020|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "T28494C" }, +"mutations": { "nuc" : [ "T28494C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-6FAF24/2020|20-06-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6633T,C19862T" }, +"mutations": { "nuc" : [ "C6633T","C19862T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "601", +"branch_attrs": { + "labels": { "nuc mutations": "A15972G,C19718T,T28759C" }, +"mutations": { "nuc" : [ "A15972G","C19718T","T28759C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.70"}}, +"children":[ { +"name": "England/MILK-B01F25/2020|20-10-23", +"branch_attrs": { + "labels": { "nuc mutations": "C1722T,T3843C,G4300T,A4819G,C10277T,C15720T,C16114T,C17172T,A25351T,C27612T,A29031T,C29555T" }, +"mutations": { "nuc" : [ "C1722T","T3843C","G4300T","A4819G","C10277T","C15720T","C16114T","C17172T","A25351T","C27612T","A29031T","C29555T" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Switzerland/210050/2020|LR882268.1|20-07-19", +"branch_attrs": { + "labels": { "nuc mutations": "C203T,T3095C,C12880T,C23896T,C25831T,G28077T,C28603T" }, +"mutations": { "nuc" : [ "C203T","T3095C","C12880T","C23896T","C25831T","G28077T","C28603T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-19"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "602", +"branch_attrs": { + "labels": { "nuc mutations": "A23207G" }, +"mutations": { "nuc" : [ "A23207G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.299"}}, +"children":[ { +"name": "England/ALDP-691499/2020|20-07-02", +"branch_attrs": { + "labels": { "nuc mutations": "C8650T,A21177G,C28603T" }, +"mutations": { "nuc" : [ "C8650T","A21177G","C28603T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-07-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-4A2BFC/2020|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "A20826G" }, +"mutations": { "nuc" : [ "A20826G" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "603", +"branch_attrs": { + "labels": { "nuc mutations": "A19650G" }, +"mutations": { "nuc" : [ "A19650G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.301"}}, +"children":[ { +"name": "England/ALDP-9B5BC4/2020|20-08-28", +"branch_attrs": { + "labels": { "nuc mutations": "A9433T,G11837T,C18807T,C21595T,A22024C,C22096T,C25546T" }, +"mutations": { "nuc" : [ "A9433T","G11837T","C18807T","C21595T","A22024C","C22096T","C25546T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-08-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-49F5B8/2020|20-05-22", +"branch_attrs": { + "labels": { "nuc mutations": "T21368C" }, +"mutations": { "nuc" : [ "T21368C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-22"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "604", +"branch_attrs": { + "labels": { "nuc mutations": "C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G" }, +"mutations": { "nuc" : [ "C4084T","G5716A","C6568T","C6628T","C7528T","C8139T","C9298T","A10286G","C19524T","A22116G" ] } + }, +"node_attrs": { + "div":17, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.147"}}, +"children":[ { +"name": "England/MILK-62FD59/2020|20-07-05", +"branch_attrs": { + "labels": { "nuc mutations": "T17313C,C17502T,C20320T" }, +"mutations": { "nuc" : [ "T17313C","C17502T","C20320T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-07-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-90DDC7/2020|20-06-26", +"branch_attrs": { + "labels": { "nuc mutations": "G488T,C1514T,C18744T" }, +"mutations": { "nuc" : [ "G488T","C1514T","C18744T" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-06-26"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "605", +"branch_attrs": { + "labels": { "nuc mutations": "C815T,C3411T,G25437T" }, +"mutations": { "nuc" : [ "C815T","C3411T","G25437T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.225"}}, +"children":[ { +"name": "USA/IL-UW-1082/2020|MT929034.1|20-07-27", +"branch_attrs": { + "labels": { "nuc mutations": "C2388T,G19656A,C26527T" }, +"mutations": { "nuc" : [ "C2388T","G19656A","C26527T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/FL-BPHL-1773/2020|MW206588.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "T10795C,C12374T,C18452T,G25775T,C28153T" }, +"mutations": { "nuc" : [ "T10795C","C12374T","C18452T","G25775T","C28153T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "606", +"branch_attrs": { + "labels": { "nuc mutations": "C11620T" }, +"mutations": { "nuc" : [ "C11620T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.239"}}, +"children":[ { +"name": "England/LIVE-9BC33/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-0361/2020|MW114997.1|20-06-13", +"branch_attrs": { + "labels": { "nuc mutations": "C4540T,C28006T" }, +"mutations": { "nuc" : [ "C4540T","C28006T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-13"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "607", +"branch_attrs": { + "labels": { "nuc mutations": "C1170T" }, +"mutations": { "nuc" : [ "C1170T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.313"}}, +"children":[ { +"name": "England/CAMB-1B087F/2020|20-05-04", +"branch_attrs": { + "labels": { "nuc mutations": "T8416C,C11379T,C16178T,G27651C" }, +"mutations": { "nuc" : [ "T8416C","C11379T","C16178T","G27651C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-04"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-2223F/2020|20-04-30", +"branch_attrs": { + "labels": { "nuc mutations": "C2488T,T7582C,C13671T" }, +"mutations": { "nuc" : [ "C2488T","T7582C","C13671T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "608", +"branch_attrs": { + "labels": { "nuc mutations": "T3154C" }, +"mutations": { "nuc" : [ "T3154C" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.92"}}, +"children":[ { +"name": "England/ALDP-5A2A49/2020|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "C18981T" }, +"mutations": { "nuc" : [ "C18981T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-5A2D6E/2020|20-06-14", +"branch_attrs": { + "labels": { "nuc mutations": "T15231C,G19670A,G25687T" }, +"mutations": { "nuc" : [ "T15231C","G19670A","G25687T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "609", +"branch_attrs": { + "labels": { "nuc mutations": "G16813A" }, +"mutations": { "nuc" : [ "G16813A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.26"}}, +"children":[ { +"name": "USA/WA-S1407/2020|MT821568.1|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "T6023C,C19041T,A21312G,C28312T" }, +"mutations": { "nuc" : [ "T6023C","C19041T","A21312G","C28312T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-19"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1434/2020|MT821707.1|20-05-21", +"branch_attrs": { + "labels": { "nuc mutations": "C8802T" }, +"mutations": { "nuc" : [ "C8802T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-05-21"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "610", +"branch_attrs": { + "labels": { "nuc mutations": "C6445T,G16852T" }, +"mutations": { "nuc" : [ "C6445T","G16852T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.233"}}, +"children":[ { +"name": "USA/WA-S2598/2020|MT831859.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "G29254T" }, +"mutations": { "nuc" : [ "G29254T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1840/2020|MT834024.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "T5335C,G14186A,C27059T" }, +"mutations": { "nuc" : [ "T5335C","G14186A","C27059T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "611", +"branch_attrs": { + "labels": { "nuc mutations": "A5538T,T25783C" }, +"mutations": { "nuc" : [ "A5538T","T25783C" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.65"}}, +"children":[ { +"name": "USA/WA-S1246/2020|MT821587.1|20-05-11", +"branch_attrs": { + "labels": { "nuc mutations": "C10408T,T21802C,C26022T,C27059T" }, +"mutations": { "nuc" : [ "C10408T","T21802C","C26022T","C27059T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-11"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S820/2020|MT641503.1|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G17261A" }, +"mutations": { "nuc" : [ "G17261A" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "612", +"branch_attrs": { + "labels": { "nuc mutations": "G27281T" }, +"mutations": { "nuc" : [ "G27281T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.89"}}, +"children":[ { +"name": "England/CAMB-80B43/2020|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "C2334T,C23121T" }, +"mutations": { "nuc" : [ "C2334T","C23121T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-7666D/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "G10870T,C21614T" }, +"mutations": { "nuc" : [ "G10870T","C21614T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "613", +"branch_attrs": { + "labels": { "nuc mutations": "G18803T,A22606G" }, +"mutations": { "nuc" : [ "G18803T","A22606G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.116"}}, +"children":[ { +"name": "USA/WA-S2573/2020|MT831840.1|20-06-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-17"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2761/2020|MT947580.1|20-07-29", +"branch_attrs": { + "labels": { "nuc mutations": "A5101G,A9830G,A12358T,G25922T" }, +"mutations": { "nuc" : [ "A5101G","A9830G","A12358T","G25922T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "614", +"branch_attrs": { + "labels": { "nuc mutations": "C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A" }, +"mutations": { "nuc" : [ "C313T","C2445T","C9430T","T15156C","C20368T","C26527T","C29149T","G29239A" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.236"}}, +"children":[ { +"name": "England/ALDP-9BEB16/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "G14428T" }, +"mutations": { "nuc" : [ "G14428T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-A95376/2020|20-10-19", +"branch_attrs": { + "labels": { "nuc mutations": "A9436T,C15848T,C17550T,G26153T" }, +"mutations": { "nuc" : [ "A9436T","C15848T","C17550T","G26153T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "20-10-19"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "615", +"branch_attrs": { + "labels": { "nuc mutations": "G11447A,C21648T" }, +"mutations": { "nuc" : [ "G11447A","C21648T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.67"}}, +"children":[ { +"name": "England/QEUH-A9F5D0/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "C5717T,C10138T,C12559T,A19098G,C24130T" }, +"mutations": { "nuc" : [ "C5717T","C10138T","C12559T","A19098G","C24130T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-10-20"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96AEF2/2020|20-08-15", +"branch_attrs": { + "labels": { "nuc mutations": "G7037T,C12488T" }, +"mutations": { "nuc" : [ "G7037T","C12488T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-08-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "616", +"branch_attrs": { + "labels": { "nuc mutations": "C19170T,G19509A" }, +"mutations": { "nuc" : [ "C19170T","G19509A" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.10"}}, +"children":[ { +"name": "Scotland/CVR1557/2020|20-04-03", +"branch_attrs": { + "labels": { "nuc mutations": "G23401T" }, +"mutations": { "nuc" : [ "G23401T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-03"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-34610/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "G16014A" }, +"mutations": { "nuc" : [ "G16014A" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-21"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "617", +"branch_attrs": { + "labels": { "nuc mutations": "C26313T" }, +"mutations": { "nuc" : [ "C26313T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "L.2"}}, +"children":[ { +"name": "Netherlands/NA_436/2020|LR883367.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "G29628T" }, +"mutations": { "nuc" : [ "G29628T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-07"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/Friesland_33/2020|LR883315.1|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C4824T" }, +"mutations": { "nuc" : [ "C4824T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-14"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "618", +"branch_attrs": { + "labels": { "nuc mutations": "C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T" }, +"mutations": { "nuc" : [ "C913T","C3267T","C5388A","C5986T","T6954C","C14676T","C15279T","T16176C","A23063T","C23271A","C23604A","C23709T","T24506G","G24914C","C27972T","G28048T","A28111G","G28280C","A28281T","T28282A","C28977T" ] } + }, +"node_attrs": { + "div":28, "MAT_Clade_0": {"value": "20I/501Y.V1"}, "MAT_Clade_1": {"value": "B.1.1.7"}}, +"children":[ { +"name": "619", +"branch_attrs": { + "labels": { "nuc mutations": "G174T,G210T,C2453T" }, +"mutations": { "nuc" : [ "G174T","G210T","C2453T" ] } + }, +"node_attrs": { + "div":31, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/CAMC-B36516/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "C2918T" }, +"mutations": { "nuc" : [ "C2918T" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B362D3/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "C29311T" }, +"mutations": { "nuc" : [ "C29311T" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "620", +"branch_attrs": { + "labels": { "nuc mutations": "T8603C,A17615G,G25437T" }, +"mutations": { "nuc" : [ "T8603C","A17615G","G25437T" ] } + }, +"node_attrs": { + "div":31, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "England/MILK-B3A284/2020|20-11-01", +"branch_attrs": { + "labels": { "nuc mutations": "C27046T" }, +"mutations": { "nuc" : [ "C27046T" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B365AD/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "T19232C" }, +"mutations": { "nuc" : [ "T19232C" ] } + }, +"node_attrs": { "div": 32, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "621", +"branch_attrs": { + "labels": { "nuc mutations": "A1163T" }, +"mutations": { "nuc" : [ "A1163T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.25"}}, +"children":[ { +"name": "BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "C19273T" }, +"mutations": { "nuc" : [ "C19273T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-06-07"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18", +"branch_attrs": { + "labels": { "nuc mutations": "G15260T,G26268T" }, +"mutations": { "nuc" : [ "G15260T","G26268T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-06-18"}, "country": {"value": "BGD"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "622", +"branch_attrs": { + "labels": { "nuc mutations": "C7600T,G7798T,T23548C" }, +"mutations": { "nuc" : [ "C7600T","G7798T","T23548C" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "D.3"}}, +"children":[ { +"name": "AUS/VIC3114/2020|MT972550.1|20-07-06", +"branch_attrs": { + "labels": { "nuc mutations": "C24912T,T27484C" }, +"mutations": { "nuc" : [ "C24912T","T27484C" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-06"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC9664/2020|MW156172.1|20-08-12", +"branch_attrs": { + "labels": { "nuc mutations": "C506T,G29072T" }, +"mutations": { "nuc" : [ "C506T","G29072T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-08-12"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "623", +"branch_attrs": { + "labels": { "nuc mutations": "T7540C,G16647T,G22992A,G23401A" }, +"mutations": { "nuc" : [ "T7540C","G16647T","G22992A","G23401A" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": "20F"}, "MAT_Clade_1": {"value": "D.2"}}, +"children":[ { +"name": "AUS/VIC13094/2020|MW185501.1|20-07-31", +"branch_attrs": { + "labels": { "nuc mutations": "G6662A" }, +"mutations": { "nuc" : [ "G6662A" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-31"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "624", +"branch_attrs": { + "labels": { "nuc mutations": "C18555T,C22987T" }, +"mutations": { "nuc" : [ "C18555T","C22987T" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}, +"children":[ { +"name": "AUS/VIC9179/2020|MW153248.1|20-08-21", +"branch_attrs": { + "labels": { "nuc mutations": "G1338C,C5691T,A11425T,C20089T" }, +"mutations": { "nuc" : [ "G1338C","C5691T","A11425T","C20089T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-21"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC11646/2020|MW155572.1|20-07-22", +"branch_attrs": { + "labels": { "nuc mutations": "G6617T" }, +"mutations": { "nuc" : [ "G6617T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-07-22"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "625", +"branch_attrs": { + "labels": { "nuc mutations": "C19488T" }, +"mutations": { "nuc" : [ "C19488T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.217"}}, +"children":[ { +"name": "England/CAMB-82060/2020|20-04-21", +"branch_attrs": { + "labels": { "nuc mutations": "C5575T,A5991G,C13329T" }, +"mutations": { "nuc" : [ "C5575T","A5991G","C13329T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-82E1B/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "A8374T" }, +"mutations": { "nuc" : [ "A8374T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-14"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "626", +"branch_attrs": { + "labels": { "nuc mutations": "G5572A,A6366T,G11410A,G25776T" }, +"mutations": { "nuc" : [ "G5572A","A6366T","G11410A","G25776T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.219"}}, +"children":[ { +"name": "covid_hub_pl_ibch_0157|LR991987.1|20-05-19", +"branch_attrs": { + "labels": { "nuc mutations": "A4228G,A11410G,G23403A" }, +"mutations": { "nuc" : [ "A4228G","A11410G","G23403A" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-05-19"}, "country": {"value": "covid_hub_pl_ibch_0157|LR991987.1|20-05-19"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Poland/1/2020|LR899030.1|20-05-20", +"branch_attrs": { + "labels": { "nuc mutations": "T241C,T9440G,G17964T,T19488C,G29747T" }, +"mutations": { "nuc" : [ "T241C","T9440G","G17964T","T19488C","G29747T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-05-20"}, "country": {"value": "Poland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "627", +"branch_attrs": { + "labels": { "nuc mutations": "A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C" }, +"mutations": { "nuc" : [ "A8244G","G8408A","G12191T","T26171A","C28500T","G29254A","G29474T","G29751C" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.218"}}, +"children":[ { +"name": "England/CAMC-947259/2020|20-07-21", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-07-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-9927C9/2020|20-08-27", +"branch_attrs": { + "labels": { "nuc mutations": "T595C,G2659T,G15773A,C21789T,G24197T,G26172T" }, +"mutations": { "nuc" : [ "T595C","G2659T","G15773A","C21789T","G24197T","G26172T" ] } + }, +"node_attrs": { "div": 22, "date": {"value": "20-08-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +, +{ +"name": "628", +"branch_attrs": { + "labels": { "nuc mutations": "A11869G,T27484C" }, +"mutations": { "nuc" : [ "A11869G","T27484C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.96"}}, +"children":[ { +"name": "SAU/KFSHRC44/2020|MT820480.1|20-04-11", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-04-11"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "SAU/KAIMRC67/2020|MT820487.1|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G29422T" }, +"mutations": { "nuc" : [ "G29422T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "SAU"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "629", +"branch_attrs": { + "labels": { "nuc mutations": "C2399T" }, +"mutations": { "nuc" : [ "C2399T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.20"}}, +"children":[ { +"name": "Scotland/EDB300/2020|20-03-29", +"branch_attrs": { + "labels": { "nuc mutations": "C15240T" }, +"mutations": { "nuc" : [ "C15240T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-29"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/CVR3194/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C10335T,A11430G,G19117T,G25429A,A27232G,C28940T" }, +"mutations": { "nuc" : [ "C10335T","A11430G","G19117T","G25429A","A27232G","C28940T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-04-28"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "630", +"branch_attrs": { + "labels": { "nuc mutations": "T4149C,C12525T,G25599T" }, +"mutations": { "nuc" : [ "T4149C","C12525T","G25599T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.178"}}, +"children":[ { +"name": "England/CAMB-1AA438/2020|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-1AFB7A/2020|20-05-02", +"branch_attrs": { + "labels": { "nuc mutations": "C6016T,A8031G,C29353T" }, +"mutations": { "nuc" : [ "C6016T","A8031G","C29353T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "631", +"branch_attrs": { + "labels": { "nuc mutations": "A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G" }, +"mutations": { "nuc" : [ "A1163T","T3256C","C5622T","G14202T","G19542T","C19718T","C22388T","C26060T","G29227T","C29466T","A29771G" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.315"}}, +"children":[ { +"name": "Wales/PHWC-48212D/2020|20-10-20", +"branch_attrs": { + "labels": { "nuc mutations": "G22381T,C26029A" }, +"mutations": { "nuc" : [ "G22381T","C26029A" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-10-20"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9C80B0/2020|20-09-10", +"branch_attrs": { + "labels": { "nuc mutations": "G22471T,T22896C" }, +"mutations": { "nuc" : [ "G22471T","T22896C" ] } + }, +"node_attrs": { "div": 20, "date": {"value": "20-09-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "632", +"branch_attrs": { + "labels": { "nuc mutations": "T1543A,T4369C,T22020C,C27911T" }, +"mutations": { "nuc" : [ "T1543A","T4369C","T22020C","C27911T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.280"}}, +"children":[ { +"name": "England/MILK-9C4087/2020|20-09-09", +"branch_attrs": { + "labels": { "nuc mutations": "C1938T" }, +"mutations": { "nuc" : [ "C1938T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-09-09"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-96F349/2020|20-08-17", +"branch_attrs": { + "labels": { "nuc mutations": "G21606T,C21910T,T21976C,G28230T" }, +"mutations": { "nuc" : [ "G21606T","C21910T","T21976C","G28230T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "633", +"branch_attrs": { + "labels": { "nuc mutations": "T15978C,G24794T" }, +"mutations": { "nuc" : [ "T15978C","G24794T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.56"}}, +"children":[ { +"name": "England/BIRM-5FC3B/2020|20-05-28", +"branch_attrs": { + "labels": { "nuc mutations": "A8390G,C18676T,C19366T,C28311T,G29764A" }, +"mutations": { "nuc" : [ "A8390G","C18676T","C19366T","C28311T","G29764A" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-05-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/PHEC-13ADF/2020|20-03-13", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-03-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "634", +"branch_attrs": { + "labels": { "nuc mutations": "C8917T" }, +"mutations": { "nuc" : [ "C8917T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.182"}}, +"children":[ { +"name": "England/BIRM-6529A/2020|20-09-30", +"branch_attrs": { + "labels": { "nuc mutations": "C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T" }, +"mutations": { "nuc" : [ "C147T","G9389A","C15720T","G27955T","C27972T","G28628T","G29645T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-09-30"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2831/2020|MW077478.1|20-09-08", +"branch_attrs": { + "labels": { "nuc mutations": "C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C" }, +"mutations": { "nuc" : [ "C478T","C1076T","C1218T","T2484C","C9924T","C10279T","G11596T","G12769A","C14724T","A19540G","G25906T","C27110T","T27384C" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-09-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "635", +"branch_attrs": { + "labels": { "nuc mutations": "G27996T" }, +"mutations": { "nuc" : [ "G27996T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.193"}}, +"children":[ { +"name": "England/NORT-282796/2020|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "A1755G,C15824T" }, +"mutations": { "nuc" : [ "A1755G","C15824T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-03-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/NORT-2839AE/2020|20-04-01", +"branch_attrs": { + "labels": { "nuc mutations": "G29315T,G29468C" }, +"mutations": { "nuc" : [ "G29315T","G29468C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "636", +"branch_attrs": { + "labels": { "nuc mutations": "C527T,C1962T,C7735T,T23255C,A28065C" }, +"mutations": { "nuc" : [ "C527T","C1962T","C7735T","T23255C","A28065C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.120"}}, +"children":[ { +"name": "England/ALDP-951E49/2020|20-06-10", +"branch_attrs": { + "labels": { "nuc mutations": "C16045T,C28732T" }, +"mutations": { "nuc" : [ "C16045T","C28732T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-10"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-9557A4/2020|20-06-12", +"branch_attrs": { + "labels": { "nuc mutations": "C19454T,T19538C" }, +"mutations": { "nuc" : [ "C19454T","T19538C" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-06-12"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "637", +"branch_attrs": { + "labels": { "nuc mutations": "G21255C,G28960T" }, +"mutations": { "nuc" : [ "G21255C","G28960T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.132"}}, +"children":[ { +"name": "USA/CA-CZB-2205/2020|MW035956.1|20-05-27", +"branch_attrs": { + "labels": { "nuc mutations": "C21364T,C26625T,C28744T" }, +"mutations": { "nuc" : [ "C21364T","C26625T","C28744T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-27"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-2184/2020|MW035923.1|20-05-26", +"branch_attrs": { + "labels": { "nuc mutations": "C21205T" }, +"mutations": { "nuc" : [ "C21205T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-05-26"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "638", +"branch_attrs": { + "labels": { "nuc mutations": "C5700A" }, +"mutations": { "nuc" : [ "C5700A" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.32"}}, +"children":[ { +"name": "IND/GBRC203a/2020|MT669321.1|20-06-07", +"branch_attrs": { + "labels": { "nuc mutations": "A2292C,C2836T,G25563T,C29750T" }, +"mutations": { "nuc" : [ "A2292C","C2836T","G25563T","C29750T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-06-07"}, "country": {"value": "IND"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S2809/2020|MW077484.1|20-08-31", +"branch_attrs": { + "labels": { "nuc mutations": "C313T,C1489T,G3287T,C9693T,C10815T,C15346A,C16626T,C25728T,G29474T,C29750T" }, +"mutations": { "nuc" : [ "C313T","C1489T","G3287T","C9693T","C10815T","C15346A","C16626T","C25728T","G29474T","C29750T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-31"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "639", +"branch_attrs": { + "labels": { "nuc mutations": "G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T" }, +"mutations": { "nuc" : [ "G5554T","G19891T","C22938A","C24034T","G25249T","G26152T","C27532T","G28321T","C29614T" ] } + }, +"node_attrs": { + "div":16, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.266"}}, +"children":[ { +"name": "England/QEUH-96E025/2020|20-08-18", +"branch_attrs": { + "labels": { "nuc mutations": "T1088C,C20736T" }, +"mutations": { "nuc" : [ "T1088C","C20736T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-08-18"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-94375E/2020|20-08-02", +"branch_attrs": { + "labels": { "nuc mutations": "G25785T" }, +"mutations": { "nuc" : [ "G25785T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-02"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "640", +"branch_attrs": { + "labels": { "nuc mutations": "A20288G,C21721T,C26894T,C28638A" }, +"mutations": { "nuc" : [ "A20288G","C21721T","C26894T","C28638A" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.228"}}, +"children":[ { +"name": "USA/CA-CZB-4099/2020|MW134393.1|20-08-15", +"branch_attrs": { + "labels": { "nuc mutations": "C478T,T2698C,G16068T,G16935T,G20679A,G29227T" }, +"mutations": { "nuc" : [ "C478T","T2698C","G16068T","G16935T","G20679A","G29227T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-08-15"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18", +"branch_attrs": { + "labels": { "nuc mutations": "G2635A,T7426C,A23234G" }, +"mutations": { "nuc" : [ "G2635A","T7426C","A23234G" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-18"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "641", +"branch_attrs": { + "labels": { "nuc mutations": "T3615C,G22256T,C23802T,A27403T,C27741T" }, +"mutations": { "nuc" : [ "T3615C","G22256T","C23802T","A27403T","C27741T" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.72"}}, +"children":[ { +"name": "England/CAMB-7C12A/2020|20-04-13", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-13"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-83348/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "642", +"branch_attrs": { + "labels": { "nuc mutations": "C20233T,C22210T" }, +"mutations": { "nuc" : [ "C20233T","C22210T" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.58"}}, +"children":[ { +"name": "Switzerland/220001/2020|LR882220.1|20-07-24", +"branch_attrs": { + "labels": { "nuc mutations": "G94T,C5365T,C13708A,A26097G,G28003T" }, +"mutations": { "nuc" : [ "G94T","C5365T","C13708A","A26097G","G28003T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-07-24"}, "country": {"value": "Switzerland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BIRM-6BECD/2020|20-11-17", +"branch_attrs": { + "labels": { "nuc mutations": "G1738T,G4960T,A15477G,C22858T,C23705T,T25312C,C26681T,G27762C,G28056A,G28085T,C28603T,G29449A" }, +"mutations": { "nuc" : [ "G1738T","G4960T","A15477G","C22858T","C23705T","T25312C","C26681T","G27762C","G28056A","G28085T","C28603T","G29449A" ] } + }, +"node_attrs": { "div": 21, "date": {"value": "20-11-17"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "643", +"branch_attrs": { + "labels": { "nuc mutations": "A23063T" }, +"mutations": { "nuc" : [ "A23063T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.136"}}, +"children":[ { +"name": "England/CAMC-946506/2020|20-07-15", +"branch_attrs": { + "labels": { "nuc mutations": "C913T,C6636T,G21800T,C27972T,G28048T" }, +"mutations": { "nuc" : [ "C913T","C6636T","G21800T","C27972T","G28048T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-07-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "AUS/VIC2173/2020|MT972184.1|20-06-24", +"branch_attrs": { + "labels": { "nuc mutations": "G10540A,C26984T,T28196C" }, +"mutations": { "nuc" : [ "G10540A","C26984T","T28196C" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-24"}, "country": {"value": "AUS"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "644", +"branch_attrs": { + "labels": { "nuc mutations": "G596T,T18231C" }, +"mutations": { "nuc" : [ "G596T","T18231C" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.169"}}, +"children":[ { +"name": "USA/MS-CDC-6546/2020|MW279423.1|20-08-25", +"branch_attrs": { + "labels": { "nuc mutations": "G1589T" }, +"mutations": { "nuc" : [ "G1589T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-08-25"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/TX-DSHS-1780/2020|MW425014.1|20-07-07", +"branch_attrs": { + "labels": { "nuc mutations": "T3127C" }, +"mutations": { "nuc" : [ "T3127C" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-07-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "645", +"branch_attrs": { + "labels": { "nuc mutations": "T10513C,T27851C,C29541T,C29739T" }, +"mutations": { "nuc" : [ "T10513C","T27851C","C29541T","C29739T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.109"}}, +"children":[ { +"name": "England/ALDP-94A63C/2020|20-06-11", +"branch_attrs": { + "labels": { "nuc mutations": "A7291G,C7423T,C9979T,C26447T,C29077T" }, +"mutations": { "nuc" : [ "A7291G","C7423T","C9979T","C26447T","C29077T" ] } + }, +"node_attrs": { "div": 16, "date": {"value": "20-06-11"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-52A636/2020|20-06-01", +"branch_attrs": { + "labels": { "nuc mutations": "A2756G,C17550T" }, +"mutations": { "nuc" : [ "A2756G","C17550T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-06-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "646", +"branch_attrs": { + "labels": { "nuc mutations": "C16101T" }, +"mutations": { "nuc" : [ "C16101T" ] } + }, +"node_attrs": { + "div":8, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.154"}}, +"children":[ { +"name": "England/SHEF-D1CE6/2020|20-04-28", +"branch_attrs": { + "labels": { "nuc mutations": "C5339T,A29571T,C29572T,G29573A" }, +"mutations": { "nuc" : [ "C5339T","A29571T","C29572T","G29573A" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/SHEF-C0F96/2020|20-04-15", +"branch_attrs": { + "labels": { "nuc mutations": "G12514T,A18616G,C28256T,G29779C" }, +"mutations": { "nuc" : [ "G12514T","A18616G","C28256T","G29779C" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-04-15"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "647", +"branch_attrs": { + "labels": { "nuc mutations": "C21302T,C21304A,G21305A,G28884T" }, +"mutations": { "nuc" : [ "C21302T","C21304A","G21305A","G28884T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.44"}}, +"children":[ { +"name": "England/QEUH-B10460/2020|20-11-02", +"branch_attrs": { + "labels": { "nuc mutations": "A15753G,A19655G,G27798T" }, +"mutations": { "nuc" : [ "A15753G","A19655G","G27798T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-11-02"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Scotland/QEUH-96D5CD/2020|20-08-20", +"branch_attrs": { + "labels": { "nuc mutations": "C4655T,G5305A,A5958G,C28887T" }, +"mutations": { "nuc" : [ "C4655T","G5305A","A5958G","C28887T" ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-08-20"}, "country": {"value": "Scotland"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "648", +"branch_attrs": { + "labels": { "nuc mutations": "G5950T,C19164T,A21137G,T27447C,T29661C" }, +"mutations": { "nuc" : [ "G5950T","C19164T","A21137G","T27447C","T29661C" ] } + }, +"node_attrs": { + "div":12, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.111"}}, +"children":[ { +"name": "ZW-6983|LR963462.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "C10341T" }, +"mutations": { "nuc" : [ "C10341T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "ZW-6983|LR963462.1|20-05-01"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "ZW-6978|LR963455.1|20-05-01", +"branch_attrs": { + "labels": { "nuc mutations": "A13833G" }, +"mutations": { "nuc" : [ "A13833G" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-01"}, "country": {"value": "ZW-6978|LR963455.1|20-05-01"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "649", +"branch_attrs": { + "labels": { "nuc mutations": "A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C" }, +"mutations": { "nuc" : [ "A3852T","C3961T","G7798T","C9891T","C10116T","C21846T","G23012A","T23287C","C23604A","C25276A","T26767C" ] } + }, +"node_attrs": { + "div":18, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.318"}}, +"children":[ { +"name": "USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02", +"branch_attrs": { + "labels": { "nuc mutations": "C28720T" }, +"mutations": { "nuc" : [ "C28720T" ] } + }, +"node_attrs": { "div": 19, "date": {"value": "21-02-02"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/MILK-1169960/2021|21-01-25", +"branch_attrs": { + "labels": { "nuc mutations": "T4895C,C9072T,G20578A,G23948C,C24382T,G28209T,A28271G,C29769T" }, +"mutations": { "nuc" : [ "T4895C","C9072T","G20578A","G23948C","C24382T","G28209T","A28271G","C29769T" ] } + }, +"node_attrs": { "div": 26, "date": {"value": "21-01-25"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "650", +"branch_attrs": { + "labels": { "nuc mutations": "G5924A,T21775G" }, +"mutations": { "nuc" : [ "G5924A","T21775G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.263"}}, +"children":[ { +"name": "England/ALDP-952A44/2020|20-06-21", +"branch_attrs": { + "labels": { "nuc mutations": "G16852T,G18984T" }, +"mutations": { "nuc" : [ "G16852T","G18984T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-06-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/QEUH-9B4A22/2020|20-09-07", +"branch_attrs": { + "labels": { "nuc mutations": "G2885A,C15026T,G17427T,G19635T,C21846T" }, +"mutations": { "nuc" : [ "G2885A","C15026T","G17427T","G19635T","C21846T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-09-07"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "651", +"branch_attrs": { + "labels": { "nuc mutations": "C7095T,A16179G" }, +"mutations": { "nuc" : [ "C7095T","A16179G" ] } + }, +"node_attrs": { + "div":9, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.185"}}, +"children":[ { +"name": "Netherlands/NA_359/2020|LR883961.1|20-04-07", +"branch_attrs": { + "labels": { "nuc mutations": "C13502T" }, +"mutations": { "nuc" : [ "C13502T" ] } + }, +"node_attrs": { "div": 10, "date": {"value": "20-04-07"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Netherlands/NA_589/2020|LR883868.1|20-04-05", +"branch_attrs": { + "labels": { "nuc mutations": "C21588T,G25012T" }, +"mutations": { "nuc" : [ "C21588T","G25012T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-05"}, "country": {"value": "Netherlands"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "652", +"branch_attrs": { + "labels": { "nuc mutations": "G4207T,A4208C,G11842T" }, +"mutations": { "nuc" : [ "G4207T","A4208C","G11842T" ] } + }, +"node_attrs": { + "div":10, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.13"}}, +"children":[ { +"name": "England/CAMB-1AE7FF/2020|20-04-29", +"branch_attrs": { + "labels": { "nuc mutations": "C6033T" }, +"mutations": { "nuc" : [ "C6033T" ] } + }, +"node_attrs": { "div": 11, "date": {"value": "20-04-29"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMB-762D2/2020|20-03-28", +"branch_attrs": { + "labels": { "nuc mutations": "C14757T,G16072T,A19743C,C22498T" }, +"mutations": { "nuc" : [ "C14757T","G16072T","A19743C","C22498T" ] } + }, +"node_attrs": { "div": 14, "date": {"value": "20-03-28"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "653", +"branch_attrs": { + "labels": { "nuc mutations": "G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T" }, +"mutations": { "nuc" : [ "G1599T","C4965T","A6466G","A6616G","A7319G","G7954T","C12651T","G14371A","G21624T","G23587T","G28914T" ] } + }, +"node_attrs": { + "div":15, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.195"}}, +"children":[ { +"name": "England/ALDP-BCA4B0/2020|20-11-23", +"branch_attrs": { + "labels": { "nuc mutations": "" }, +"mutations": { "nuc" : [ ] } + }, +"node_attrs": { "div": 15, "date": {"value": "20-11-23"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/ALDP-119985B/2021|21-01-27", +"branch_attrs": { + "labels": { "nuc mutations": "G7319A,G26526T,C27213T" }, +"mutations": { "nuc" : [ "G7319A","G26526T","C27213T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "21-01-27"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +, +{ +"name": "654", +"branch_attrs": { + "labels": { "nuc mutations": "C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T" }, +"mutations": { "nuc" : [ "C15933T","G16968T","T19839C","G28881A","G28882A","G28883C","C29784T" ] } + }, +"node_attrs": { + "div":11, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.291"}}, +"children":[ { +"name": "USA/WA-S1222/2020|MT821613.1|20-05-08", +"branch_attrs": { + "labels": { "nuc mutations": "C186T" }, +"mutations": { "nuc" : [ "C186T" ] } + }, +"node_attrs": { "div": 12, "date": {"value": "20-05-08"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/WA-S1655/2020|MT834136.1|20-05-29", +"branch_attrs": { + "labels": { "nuc mutations": "C15240T,C26607T" }, +"mutations": { "nuc" : [ "C15240T","C26607T" ] } + }, +"node_attrs": { "div": 13, "date": {"value": "20-05-29"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "655", +"branch_attrs": { + "labels": { "nuc mutations": "T15933C,T16968G,T29784C" }, +"mutations": { "nuc" : [ "T15933C","T16968G","T29784C" ] } + }, +"node_attrs": { + "div":14, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.77"}}, +"children":[ { +"name": "Spain/R60/2020|LR884131.1|20-04-17", +"branch_attrs": { + "labels": { "nuc mutations": "G3849A,G27506T,C29203T" }, +"mutations": { "nuc" : [ "G3849A","G27506T","C29203T" ] } + }, +"node_attrs": { "div": 17, "date": {"value": "20-04-17"}, "country": {"value": "Spain"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-CZB-5682/2020|MW276261.1|20-07-23", +"branch_attrs": { + "labels": { "nuc mutations": "A14424G,G18880T,C28057T,C29774T" }, +"mutations": { "nuc" : [ "A14424G","G18880T","C28057T","C29774T" ] } + }, +"node_attrs": { "div": 18, "date": {"value": "20-07-23"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "656", +"branch_attrs": { + "labels": { "nuc mutations": "C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T" }, +"mutations": { "nuc" : [ "C4321T","T8800C","T15801C","C17746T","C26801T","G27703T","C28320T" ] } + }, +"node_attrs": { + "div":21, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.1.224"}}, +"children":[ { +"name": "England/MILK-A06194/2020|20-10-01", +"branch_attrs": { + "labels": { "nuc mutations": "C12513T,T29059C" }, +"mutations": { "nuc" : [ "C12513T","T29059C" ] } + }, +"node_attrs": { "div": 23, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/CAMC-B32AA2/2020|20-11-05", +"branch_attrs": { + "labels": { "nuc mutations": "G14528A,C16393T,T16695G,C24023T" }, +"mutations": { "nuc" : [ "G14528A","C16393T","T16695G","C24023T" ] } + }, +"node_attrs": { "div": 25, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +, +{ +"name": "657", +"branch_attrs": { + "labels": { "nuc mutations": "G20980A" }, +"mutations": { "nuc" : [ "G20980A" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.1.134"}}, +"children":[ { +"name": "USA/FHCRC-19442/2020|MW593677.1|20-07-30", +"branch_attrs": { + "labels": { "nuc mutations": "T5028C,C8818T,G9398T,C15952T" }, +"mutations": { "nuc" : [ "T5028C","C8818T","G9398T","C15952T" ] } + }, +"node_attrs": { "div": 9, "date": {"value": "20-07-30"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07", +"branch_attrs": { + "labels": { "nuc mutations": "A1005G,T6407A,G20476T" }, +"mutations": { "nuc" : [ "A1005G","T6407A","G20476T" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-07-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +] +} +, +{ +"name": "658", +"branch_attrs": { + "labels": { "nuc mutations": "T241C,G1440A,G2891A" }, +"mutations": { "nuc" : [ "T241C","G1440A","G2891A" ] } + }, +"node_attrs": { + "div":4, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.3"}}, +"children":[ { +"name": "England/CAMB-7772D/2020|20-03-31", +"branch_attrs": { + "labels": { "nuc mutations": "C4668T,C21742T,C25931A" }, +"mutations": { "nuc" : [ "C4668T","C21742T","C25931A" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "England/BRIS-12208F/2020|20-03-21", +"branch_attrs": { + "labels": { "nuc mutations": "C14585T,C27603T" }, +"mutations": { "nuc" : [ "C14585T","C27603T" ] } + }, +"node_attrs": { "div": 6, "date": {"value": "20-03-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "659", +"branch_attrs": { + "labels": { "nuc mutations": "G28851T" }, +"mutations": { "nuc" : [ "G28851T" ] } + }, +"node_attrs": { + "div":5, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.3.1"}}, +"children":[ { +"name": "Wales/PHWC-31CB7/2020|20-04-14", +"branch_attrs": { + "labels": { "nuc mutations": "C9180T,C16466T,G19670A" }, +"mutations": { "nuc" : [ "C9180T","C16466T","G19670A" ] } + }, +"node_attrs": { "div": 8, "date": {"value": "20-04-14"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +, +{ +"name": "Wales/PHWC-26D2B/2020|20-03-30", +"branch_attrs": { + "labels": { "nuc mutations": "C5183T,G18651T" }, +"mutations": { "nuc" : [ "C5183T","G18651T" ] } + }, +"node_attrs": { "div": 7, "date": {"value": "20-03-30"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}} +} +] +} +] +} +] +} +] +} +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_15_subtree_no_genotype.vcf Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,3360 @@ +##fileformat=VCFv4.2 +#CHROM POS ID REF ALT QUAL FILTER INFO +NC_045512v2 61 G61T G T . . AC=2;AN=1125 +NC_045512v2 66 C66A,C66T C A,T . . AC=2,6;AN=1125 +NC_045512v2 83 T83C T C . . AC=1;AN=1125 +NC_045512v2 94 G94T G T . . AC=1;AN=1125 +NC_045512v2 96 C96T C T . . AC=1;AN=1125 +NC_045512v2 100 C100T C T . . AC=2;AN=1125 +NC_045512v2 105 G105T G T . . AC=1;AN=1125 +NC_045512v2 106 C106T C T . . AC=1;AN=1125 +NC_045512v2 125 C125T C T . . AC=1;AN=1125 +NC_045512v2 140 C140T C T . . AC=1;AN=1125 +NC_045512v2 147 C147T C T . . AC=3;AN=1125 +NC_045512v2 158 A158G A G . . AC=1;AN=1125 +NC_045512v2 160 G160T G T . . AC=2;AN=1125 +NC_045512v2 169 A169G A G . . AC=1;AN=1125 +NC_045512v2 174 G174T G T . . AC=8;AN=1125 +NC_045512v2 181 T181C T C . . AC=2;AN=1125 +NC_045512v2 186 C186T C T . . AC=2;AN=1125 +NC_045512v2 187 A187G A G . . AC=5;AN=1125 +NC_045512v2 199 G199T G T . . AC=2;AN=1125 +NC_045512v2 203 C203T C T . . AC=2;AN=1125 +NC_045512v2 204 G204T G T . . AC=15;AN=1125 +NC_045512v2 208 G208T G T . . AC=4;AN=1125 +NC_045512v2 209 T209C T C . . AC=1;AN=1125 +NC_045512v2 210 G210T G T . . AC=3;AN=1125 +NC_045512v2 222 C222T C T . . AC=5;AN=1125 +NC_045512v2 235 A235C A C . . AC=1;AN=1125 +NC_045512v2 241 C241A,C241T C A,T . . AC=1,1116;AN=1125 +NC_045512v2 242 G242T G T . . AC=1;AN=1125 +NC_045512v2 245 C245T C T . . AC=1;AN=1125 +NC_045512v2 248 G248T G T . . AC=1;AN=1125 +NC_045512v2 271 G271T G T . . AC=1;AN=1125 +NC_045512v2 313 C313T C T . . AC=39;AN=1125 +NC_045512v2 335 C335T C T . . AC=3;AN=1125 +NC_045512v2 337 C337T C T . . AC=1;AN=1125 +NC_045512v2 344 C344T C T . . AC=1;AN=1125 +NC_045512v2 346 C346T C T . . AC=2;AN=1125 +NC_045512v2 361 A361G A G . . AC=1;AN=1125 +NC_045512v2 370 G370T G T . . AC=2;AN=1125 +NC_045512v2 379 C379A,C379T C A,T . . AC=2,1;AN=1125 +NC_045512v2 390 C390T C T . . AC=1;AN=1125 +NC_045512v2 401 C401T C T . . AC=1;AN=1125 +NC_045512v2 408 A408G A G . . AC=4;AN=1125 +NC_045512v2 419 G419A G A . . AC=1;AN=1125 +NC_045512v2 443 G443A G A . . AC=2;AN=1125 +NC_045512v2 445 T445C T C . . AC=52;AN=1125 +NC_045512v2 454 A454G A G . . AC=1;AN=1125 +NC_045512v2 466 C466T C T . . AC=1;AN=1125 +NC_045512v2 475 C475T C T . . AC=2;AN=1125 +NC_045512v2 476 A476G A G . . AC=1;AN=1125 +NC_045512v2 478 C478T C T . . AC=2;AN=1125 +NC_045512v2 487 G487A G A . . AC=1;AN=1125 +NC_045512v2 488 G488T G T . . AC=1;AN=1125 +NC_045512v2 489 A489G A G . . AC=1;AN=1125 +NC_045512v2 505 T505C T C . . AC=3;AN=1125 +NC_045512v2 506 C506T C T . . AC=1;AN=1125 +NC_045512v2 511 T511C T C . . AC=1;AN=1125 +NC_045512v2 512 C512T C T . . AC=1;AN=1125 +NC_045512v2 521 G521T G T . . AC=3;AN=1125 +NC_045512v2 526 G526C,G526T G C,T . . AC=1,1;AN=1125 +NC_045512v2 527 C527T C T . . AC=2;AN=1125 +NC_045512v2 533 G533A G A . . AC=1;AN=1125 +NC_045512v2 538 A538G A G . . AC=3;AN=1125 +NC_045512v2 539 C539T C T . . AC=2;AN=1125 +NC_045512v2 541 C541T C T . . AC=1;AN=1125 +NC_045512v2 542 G542A G A . . AC=1;AN=1125 +NC_045512v2 544 A544G A G . . AC=2;AN=1125 +NC_045512v2 556 C556T C T . . AC=3;AN=1125 +NC_045512v2 569 G569A G A . . AC=2;AN=1125 +NC_045512v2 571 G571A G A . . AC=1;AN=1125 +NC_045512v2 583 C583T C T . . AC=1;AN=1125 +NC_045512v2 593 C593T C T . . AC=5;AN=1125 +NC_045512v2 595 T595C T C . . AC=1;AN=1125 +NC_045512v2 596 G596A,G596T G A,T . . AC=1,2;AN=1125 +NC_045512v2 601 C601T C T . . AC=3;AN=1125 +NC_045512v2 619 C619T C T . . AC=1;AN=1125 +NC_045512v2 621 G621A G A . . AC=1;AN=1125 +NC_045512v2 622 C622T C T . . AC=2;AN=1125 +NC_045512v2 625 G625T G T . . AC=2;AN=1125 +NC_045512v2 642 A642G A G . . AC=1;AN=1125 +NC_045512v2 643 C643T C T . . AC=3;AN=1125 +NC_045512v2 658 T658C T C . . AC=1;AN=1125 +NC_045512v2 669 G669T G T . . AC=1;AN=1125 +NC_045512v2 673 C673T C T . . AC=3;AN=1125 +NC_045512v2 675 G675T G T . . AC=1;AN=1125 +NC_045512v2 676 C676T C T . . AC=1;AN=1125 +NC_045512v2 680 G680A,G680T G A,T . . AC=1,1;AN=1125 +NC_045512v2 682 T682C T C . . AC=2;AN=1125 +NC_045512v2 683 C683T C T . . AC=3;AN=1125 +NC_045512v2 696 A696C A C . . AC=2;AN=1125 +NC_045512v2 706 C706T C T . . AC=1;AN=1125 +NC_045512v2 713 G713A G A . . AC=1;AN=1125 +NC_045512v2 715 C715T C T . . AC=2;AN=1125 +NC_045512v2 716 A716G A G . . AC=2;AN=1125 +NC_045512v2 733 T733C T C . . AC=2;AN=1125 +NC_045512v2 749 A749G A G . . AC=2;AN=1125 +NC_045512v2 760 T760C T C . . AC=2;AN=1125 +NC_045512v2 761 A761G A G . . AC=2;AN=1125 +NC_045512v2 772 T772C T C . . AC=2;AN=1125 +NC_045512v2 775 C775T C T . . AC=3;AN=1125 +NC_045512v2 782 C782T C T . . AC=1;AN=1125 +NC_045512v2 790 T790C T C . . AC=2;AN=1125 +NC_045512v2 799 C799T C T . . AC=1;AN=1125 +NC_045512v2 815 C815T C T . . AC=4;AN=1125 +NC_045512v2 823 C823T C T . . AC=7;AN=1125 +NC_045512v2 829 C829T C T . . AC=6;AN=1125 +NC_045512v2 832 C832T C T . . AC=2;AN=1125 +NC_045512v2 833 T833C T C . . AC=4;AN=1125 +NC_045512v2 835 C835T C T . . AC=2;AN=1125 +NC_045512v2 838 T838C T C . . AC=1;AN=1125 +NC_045512v2 840 G840A G A . . AC=1;AN=1125 +NC_045512v2 841 C841T C T . . AC=2;AN=1125 +NC_045512v2 842 C842T C T . . AC=1;AN=1125 +NC_045512v2 847 T847C T C . . AC=1;AN=1125 +NC_045512v2 854 C854T C T . . AC=1;AN=1125 +NC_045512v2 872 G872A,G872T G A,T . . AC=1,2;AN=1125 +NC_045512v2 875 C875T C T . . AC=2;AN=1125 +NC_045512v2 878 C878T C T . . AC=1;AN=1125 +NC_045512v2 882 C882T C T . . AC=4;AN=1125 +NC_045512v2 884 C884T C T . . AC=1;AN=1125 +NC_045512v2 900 C900T C T . . AC=2;AN=1125 +NC_045512v2 901 A901T A T . . AC=1;AN=1125 +NC_045512v2 913 C913T C T . . AC=7;AN=1125 +NC_045512v2 922 G922A,G922T G A,T . . AC=2,3;AN=1125 +NC_045512v2 934 C934T C T . . AC=1;AN=1125 +NC_045512v2 936 C936T C T . . AC=3;AN=1125 +NC_045512v2 960 G960T G T . . AC=1;AN=1125 +NC_045512v2 961 T961C T C . . AC=1;AN=1125 +NC_045512v2 964 A964G A G . . AC=1;AN=1125 +NC_045512v2 974 G974A G A . . AC=1;AN=1125 +NC_045512v2 1005 A1005G A G . . AC=1;AN=1125 +NC_045512v2 1042 G1042T G T . . AC=1;AN=1125 +NC_045512v2 1059 C1059T C T . . AC=234;AN=1125 +NC_045512v2 1060 C1060T C T . . AC=2;AN=1125 +NC_045512v2 1063 C1063T C T . . AC=1;AN=1125 +NC_045512v2 1076 C1076T C T . . AC=3;AN=1125 +NC_045512v2 1088 T1088C T C . . AC=1;AN=1125 +NC_045512v2 1094 T1094C T C . . AC=2;AN=1125 +NC_045512v2 1096 A1096G A G . . AC=2;AN=1125 +NC_045512v2 1098 A1098C A C . . AC=1;AN=1125 +NC_045512v2 1122 C1122T C T . . AC=2;AN=1125 +NC_045512v2 1135 G1135T G T . . AC=2;AN=1125 +NC_045512v2 1141 G1141A,G1141T G A,T . . AC=1,2;AN=1125 +NC_045512v2 1147 T1147C T C . . AC=1;AN=1125 +NC_045512v2 1148 G1148T G T . . AC=1;AN=1125 +NC_045512v2 1150 C1150T C T . . AC=1;AN=1125 +NC_045512v2 1154 A1154G A G . . AC=2;AN=1125 +NC_045512v2 1163 A1163T A T . . AC=9;AN=1125 +NC_045512v2 1169 T1169C T C . . AC=1;AN=1125 +NC_045512v2 1170 C1170T C T . . AC=2;AN=1125 +NC_045512v2 1171 T1171C T C . . AC=2;AN=1125 +NC_045512v2 1186 G1186A G A . . AC=3;AN=1125 +NC_045512v2 1190 C1190T C T . . AC=2;AN=1125 +NC_045512v2 1191 C1191A,C1191T C A,T . . AC=2,2;AN=1125 +NC_045512v2 1194 A1194G A G . . AC=1;AN=1125 +NC_045512v2 1210 G1210T G T . . AC=3;AN=1125 +NC_045512v2 1218 C1218T C T . . AC=1;AN=1125 +NC_045512v2 1230 A1230G A G . . AC=1;AN=1125 +NC_045512v2 1263 C1263T C T . . AC=1;AN=1125 +NC_045512v2 1288 C1288T C T . . AC=6;AN=1125 +NC_045512v2 1291 A1291G A G . . AC=1;AN=1125 +NC_045512v2 1298 G1298A G A . . AC=4;AN=1125 +NC_045512v2 1302 C1302T C T . . AC=2;AN=1125 +NC_045512v2 1306 G1306T G T . . AC=1;AN=1125 +NC_045512v2 1319 G1319A G A . . AC=3;AN=1125 +NC_045512v2 1323 G1323T G T . . AC=1;AN=1125 +NC_045512v2 1325 G1325T G T . . AC=1;AN=1125 +NC_045512v2 1333 T1333A T A . . AC=1;AN=1125 +NC_045512v2 1334 T1334A T A . . AC=1;AN=1125 +NC_045512v2 1338 G1338C G C . . AC=1;AN=1125 +NC_045512v2 1347 C1347T C T . . AC=1;AN=1125 +NC_045512v2 1348 C1348T C T . . AC=2;AN=1125 +NC_045512v2 1359 T1359C T C . . AC=1;AN=1125 +NC_045512v2 1377 C1377T C T . . AC=1;AN=1125 +NC_045512v2 1380 C1380T C T . . AC=1;AN=1125 +NC_045512v2 1403 C1403T C T . . AC=1;AN=1125 +NC_045512v2 1420 C1420T C T . . AC=6;AN=1125 +NC_045512v2 1427 C1427T C T . . AC=4;AN=1125 +NC_045512v2 1437 C1437T C T . . AC=4;AN=1125 +NC_045512v2 1438 T1438C T C . . AC=1;AN=1125 +NC_045512v2 1440 G1440A G A . . AC=4;AN=1125 +NC_045512v2 1457 C1457T C T . . AC=3;AN=1125 +NC_045512v2 1463 G1463A G A . . AC=2;AN=1125 +NC_045512v2 1464 G1464A G A . . AC=5;AN=1125 +NC_045512v2 1471 C1471T C T . . AC=2;AN=1125 +NC_045512v2 1489 C1489T C T . . AC=1;AN=1125 +NC_045512v2 1495 G1495T G T . . AC=2;AN=1125 +NC_045512v2 1498 C1498T C T . . AC=2;AN=1125 +NC_045512v2 1514 C1514T C T . . AC=2;AN=1125 +NC_045512v2 1519 C1519T C T . . AC=2;AN=1125 +NC_045512v2 1528 C1528T C T . . AC=1;AN=1125 +NC_045512v2 1541 C1541T C T . . AC=2;AN=1125 +NC_045512v2 1543 T1543A T A . . AC=2;AN=1125 +NC_045512v2 1545 C1545T C T . . AC=1;AN=1125 +NC_045512v2 1550 G1550A G A . . AC=1;AN=1125 +NC_045512v2 1589 G1589A,G1589T G A,T . . AC=2,1;AN=1125 +NC_045512v2 1590 G1590T G T . . AC=2;AN=1125 +NC_045512v2 1593 C1593T C T . . AC=3;AN=1125 +NC_045512v2 1594 C1594T C T . . AC=3;AN=1125 +NC_045512v2 1599 G1599T G T . . AC=2;AN=1125 +NC_045512v2 1601 C1601T C T . . AC=1;AN=1125 +NC_045512v2 1610 A1610G A G . . AC=2;AN=1125 +NC_045512v2 1623 T1623C T C . . AC=1;AN=1125 +NC_045512v2 1625 C1625T C T . . AC=1;AN=1125 +NC_045512v2 1627 C1627T C T . . AC=2;AN=1125 +NC_045512v2 1628 C1628A C A . . AC=1;AN=1125 +NC_045512v2 1630 A1630C A C . . AC=2;AN=1125 +NC_045512v2 1659 G1659A,G1659T G A,T . . AC=1,2;AN=1125 +NC_045512v2 1663 C1663T C T . . AC=1;AN=1125 +NC_045512v2 1673 A1673G A G . . AC=2;AN=1125 +NC_045512v2 1683 T1683C T C . . AC=1;AN=1125 +NC_045512v2 1684 C1684T C T . . AC=2;AN=1125 +NC_045512v2 1699 A1699G A G . . AC=1;AN=1125 +NC_045512v2 1714 C1714T C T . . AC=2;AN=1125 +NC_045512v2 1722 C1722T C T . . AC=1;AN=1125 +NC_045512v2 1729 G1729A G A . . AC=2;AN=1125 +NC_045512v2 1734 C1734T C T . . AC=2;AN=1125 +NC_045512v2 1738 G1738T G T . . AC=3;AN=1125 +NC_045512v2 1755 A1755G A G . . AC=1;AN=1125 +NC_045512v2 1758 C1758T C T . . AC=1;AN=1125 +NC_045512v2 1778 T1778C T C . . AC=1;AN=1125 +NC_045512v2 1800 C1800A C A . . AC=2;AN=1125 +NC_045512v2 1801 A1801G A G . . AC=1;AN=1125 +NC_045512v2 1807 A1807G A G . . AC=1;AN=1125 +NC_045512v2 1812 C1812T C T . . AC=1;AN=1125 +NC_045512v2 1820 G1820A G A . . AC=8;AN=1125 +NC_045512v2 1824 C1824T C T . . AC=1;AN=1125 +NC_045512v2 1834 T1834C T C . . AC=1;AN=1125 +NC_045512v2 1843 G1843A G A . . AC=1;AN=1125 +NC_045512v2 1847 T1847C T C . . AC=1;AN=1125 +NC_045512v2 1848 C1848T C T . . AC=1;AN=1125 +NC_045512v2 1863 T1863C T C . . AC=1;AN=1125 +NC_045512v2 1866 A1866G A G . . AC=2;AN=1125 +NC_045512v2 1869 C1869T C T . . AC=1;AN=1125 +NC_045512v2 1874 G1874T G T . . AC=2;AN=1125 +NC_045512v2 1882 G1882T G T . . AC=1;AN=1125 +NC_045512v2 1884 C1884T C T . . AC=4;AN=1125 +NC_045512v2 1887 C1887T C T . . AC=2;AN=1125 +NC_045512v2 1904 A1904G A G . . AC=2;AN=1125 +NC_045512v2 1908 T1908C T C . . AC=1;AN=1125 +NC_045512v2 1909 C1909T C T . . AC=2;AN=1125 +NC_045512v2 1912 C1912T C T . . AC=9;AN=1125 +NC_045512v2 1914 G1914A G A . . AC=2;AN=1125 +NC_045512v2 1917 C1917T C T . . AC=2;AN=1125 +NC_045512v2 1918 T1918C T C . . AC=2;AN=1125 +NC_045512v2 1921 T1921C T C . . AC=1;AN=1125 +NC_045512v2 1925 A1925C A C . . AC=1;AN=1125 +NC_045512v2 1929 C1929T C T . . AC=1;AN=1125 +NC_045512v2 1937 T1937C T C . . AC=1;AN=1125 +NC_045512v2 1938 C1938T C T . . AC=1;AN=1125 +NC_045512v2 1943 C1943T C T . . AC=1;AN=1125 +NC_045512v2 1947 T1947C T C . . AC=8;AN=1125 +NC_045512v2 1957 G1957T G T . . AC=1;AN=1125 +NC_045512v2 1958 G1958A G A . . AC=1;AN=1125 +NC_045512v2 1960 C1960T C T . . AC=2;AN=1125 +NC_045512v2 1962 C1962T C T . . AC=2;AN=1125 +NC_045512v2 1968 C1968T C T . . AC=4;AN=1125 +NC_045512v2 1973 C1973T C T . . AC=1;AN=1125 +NC_045512v2 1987 A1987G A G . . AC=6;AN=1125 +NC_045512v2 1990 G1990T G T . . AC=2;AN=1125 +NC_045512v2 1997 C1997T C T . . AC=2;AN=1125 +NC_045512v2 2003 C2003T C T . . AC=1;AN=1125 +NC_045512v2 2018 A2018G A G . . AC=2;AN=1125 +NC_045512v2 2031 A2031G A G . . AC=1;AN=1125 +NC_045512v2 2035 G2035T G T . . AC=1;AN=1125 +NC_045512v2 2037 C2037T C T . . AC=1;AN=1125 +NC_045512v2 2044 C2044T C T . . AC=1;AN=1125 +NC_045512v2 2048 C2048T C T . . AC=1;AN=1125 +NC_045512v2 2062 C2062T C T . . AC=3;AN=1125 +NC_045512v2 2065 C2065T C T . . AC=1;AN=1125 +NC_045512v2 2072 G2072A G A . . AC=2;AN=1125 +NC_045512v2 2086 G2086T G T . . AC=2;AN=1125 +NC_045512v2 2104 A2104G A G . . AC=1;AN=1125 +NC_045512v2 2106 C2106T C T . . AC=1;AN=1125 +NC_045512v2 2113 C2113T C T . . AC=10;AN=1125 +NC_045512v2 2130 A2130T A T . . AC=1;AN=1125 +NC_045512v2 2135 C2135T C T . . AC=1;AN=1125 +NC_045512v2 2140 A2140G A G . . AC=1;AN=1125 +NC_045512v2 2143 C2143T C T . . AC=2;AN=1125 +NC_045512v2 2144 G2144T G T . . AC=1;AN=1125 +NC_045512v2 2151 A2151G A G . . AC=1;AN=1125 +NC_045512v2 2155 G2155T G T . . AC=1;AN=1125 +NC_045512v2 2161 A2161G A G . . AC=2;AN=1125 +NC_045512v2 2164 G2164A G A . . AC=2;AN=1125 +NC_045512v2 2166 A2166G A G . . AC=1;AN=1125 +NC_045512v2 2175 A2175G A G . . AC=1;AN=1125 +NC_045512v2 2252 C2252A C A . . AC=2;AN=1125 +NC_045512v2 2258 G2258A G A . . AC=2;AN=1125 +NC_045512v2 2271 A2271G A G . . AC=1;AN=1125 +NC_045512v2 2272 G2272A,G2272T G A,T . . AC=1,1;AN=1125 +NC_045512v2 2281 G2281A G A . . AC=1;AN=1125 +NC_045512v2 2282 G2282A G A . . AC=2;AN=1125 +NC_045512v2 2285 A2285T A T . . AC=2;AN=1125 +NC_045512v2 2286 G2286A G A . . AC=1;AN=1125 +NC_045512v2 2292 A2292C A C . . AC=3;AN=1125 +NC_045512v2 2300 T2300C T C . . AC=2;AN=1125 +NC_045512v2 2305 G2305T G T . . AC=1;AN=1125 +NC_045512v2 2324 G2324A G A . . AC=1;AN=1125 +NC_045512v2 2334 C2334T C T . . AC=1;AN=1125 +NC_045512v2 2340 C2340T C T . . AC=1;AN=1125 +NC_045512v2 2342 A2342G A G . . AC=1;AN=1125 +NC_045512v2 2358 C2358T C T . . AC=1;AN=1125 +NC_045512v2 2388 C2388T C T . . AC=1;AN=1125 +NC_045512v2 2395 C2395T C T . . AC=3;AN=1125 +NC_045512v2 2398 G2398A G A . . AC=1;AN=1125 +NC_045512v2 2399 C2399T C T . . AC=2;AN=1125 +NC_045512v2 2406 A2406G A G . . AC=1;AN=1125 +NC_045512v2 2407 G2407C,G2407T G C,T . . AC=1,2;AN=1125 +NC_045512v2 2416 C2416T C T . . AC=35;AN=1125 +NC_045512v2 2419 A2419G A G . . AC=1;AN=1125 +NC_045512v2 2433 C2433T C T . . AC=1;AN=1125 +NC_045512v2 2445 C2445T C T . . AC=5;AN=1125 +NC_045512v2 2447 G2447T G T . . AC=2;AN=1125 +NC_045512v2 2453 C2453T C T . . AC=4;AN=1125 +NC_045512v2 2462 C2462A,C2462T C A,T . . AC=1,1;AN=1125 +NC_045512v2 2466 A2466G A G . . AC=2;AN=1125 +NC_045512v2 2468 G2468A G A . . AC=1;AN=1125 +NC_045512v2 2470 C2470T C T . . AC=1;AN=1125 +NC_045512v2 2475 A2475G A G . . AC=2;AN=1125 +NC_045512v2 2480 A2480G A G . . AC=1;AN=1125 +NC_045512v2 2484 T2484C T C . . AC=1;AN=1125 +NC_045512v2 2488 C2488T C T . . AC=2;AN=1125 +NC_045512v2 2494 G2494A G A . . AC=1;AN=1125 +NC_045512v2 2509 C2509T C T . . AC=6;AN=1125 +NC_045512v2 2511 C2511T C T . . AC=1;AN=1125 +NC_045512v2 2516 G2516T G T . . AC=1;AN=1125 +NC_045512v2 2523 C2523T C T . . AC=3;AN=1125 +NC_045512v2 2525 G2525A G A . . AC=1;AN=1125 +NC_045512v2 2526 A2526C,A2526G A C,G . . AC=2,2;AN=1125 +NC_045512v2 2533 T2533C T C . . AC=1;AN=1125 +NC_045512v2 2534 G2534T G T . . AC=1;AN=1125 +NC_045512v2 2536 C2536T C T . . AC=4;AN=1125 +NC_045512v2 2537 T2537G T G . . AC=2;AN=1125 +NC_045512v2 2545 T2545C T C . . AC=1;AN=1125 +NC_045512v2 2549 G2549A G A . . AC=1;AN=1125 +NC_045512v2 2570 C2570T C T . . AC=1;AN=1125 +NC_045512v2 2576 A2576T A T . . AC=2;AN=1125 +NC_045512v2 2578 T2578C T C . . AC=1;AN=1125 +NC_045512v2 2597 T2597C T C . . AC=4;AN=1125 +NC_045512v2 2623 C2623T C T . . AC=1;AN=1125 +NC_045512v2 2635 G2635A G A . . AC=1;AN=1125 +NC_045512v2 2638 C2638T C T . . AC=2;AN=1125 +NC_045512v2 2641 A2641G A G . . AC=4;AN=1125 +NC_045512v2 2644 C2644A,C2644T C A,T . . AC=1,1;AN=1125 +NC_045512v2 2647 A2647G A G . . AC=1;AN=1125 +NC_045512v2 2655 A2655C A C . . AC=1;AN=1125 +NC_045512v2 2658 A2658G A G . . AC=1;AN=1125 +NC_045512v2 2659 G2659A,G2659T G A,T . . AC=2,5;AN=1125 +NC_045512v2 2664 G2664A G A . . AC=1;AN=1125 +NC_045512v2 2668 C2668T C T . . AC=2;AN=1125 +NC_045512v2 2679 A2679G A G . . AC=1;AN=1125 +NC_045512v2 2692 A2692T A T . . AC=2;AN=1125 +NC_045512v2 2698 T2698C T C . . AC=1;AN=1125 +NC_045512v2 2706 C2706T C T . . AC=4;AN=1125 +NC_045512v2 2710 C2710T C T . . AC=1;AN=1125 +NC_045512v2 2749 C2749T C T . . AC=2;AN=1125 +NC_045512v2 2756 A2756G A G . . AC=1;AN=1125 +NC_045512v2 2764 G2764T G T . . AC=1;AN=1125 +NC_045512v2 2775 A2775G A G . . AC=2;AN=1125 +NC_045512v2 2782 G2782T G T . . AC=1;AN=1125 +NC_045512v2 2788 C2788T C T . . AC=1;AN=1125 +NC_045512v2 2805 A2805G A G . . AC=1;AN=1125 +NC_045512v2 2815 T2815C T C . . AC=1;AN=1125 +NC_045512v2 2819 G2819T G T . . AC=1;AN=1125 +NC_045512v2 2830 G2830A G A . . AC=1;AN=1125 +NC_045512v2 2836 C2836T C T . . AC=6;AN=1125 +NC_045512v2 2841 C2841T C T . . AC=1;AN=1125 +NC_045512v2 2842 C2842T C T . . AC=1;AN=1125 +NC_045512v2 2845 T2845C T C . . AC=2;AN=1125 +NC_045512v2 2848 A2848G A G . . AC=1;AN=1125 +NC_045512v2 2867 G2867T G T . . AC=1;AN=1125 +NC_045512v2 2869 A2869G A G . . AC=2;AN=1125 +NC_045512v2 2871 A2871C A C . . AC=1;AN=1125 +NC_045512v2 2872 T2872C T C . . AC=1;AN=1125 +NC_045512v2 2878 C2878T C T . . AC=1;AN=1125 +NC_045512v2 2880 C2880T C T . . AC=1;AN=1125 +NC_045512v2 2885 G2885A,G2885T G A,T . . AC=1,1;AN=1125 +NC_045512v2 2891 G2891A G A . . AC=4;AN=1125 +NC_045512v2 2898 C2898T C T . . AC=2;AN=1125 +NC_045512v2 2900 G2900T G T . . AC=1;AN=1125 +NC_045512v2 2902 C2902T C T . . AC=1;AN=1125 +NC_045512v2 2903 A2903G A G . . AC=1;AN=1125 +NC_045512v2 2910 C2910T C T . . AC=2;AN=1125 +NC_045512v2 2918 C2918T C T . . AC=1;AN=1125 +NC_045512v2 2919 C2919T C T . . AC=1;AN=1125 +NC_045512v2 2924 T2924C T C . . AC=1;AN=1125 +NC_045512v2 2937 C2937T C T . . AC=2;AN=1125 +NC_045512v2 2939 C2939T C T . . AC=7;AN=1125 +NC_045512v2 2940 C2940T C T . . AC=3;AN=1125 +NC_045512v2 2945 G2945A G A . . AC=2;AN=1125 +NC_045512v2 2947 C2947T C T . . AC=1;AN=1125 +NC_045512v2 2948 A2948G A G . . AC=1;AN=1125 +NC_045512v2 2983 C2983T C T . . AC=1;AN=1125 +NC_045512v2 2995 G2995T G T . . AC=4;AN=1125 +NC_045512v2 3011 T3011C T C . . AC=2;AN=1125 +NC_045512v2 3015 C3015T C T . . AC=1;AN=1125 +NC_045512v2 3037 C3037T C T . . AC=1117;AN=1125 +NC_045512v2 3041 C3041A C A . . AC=1;AN=1125 +NC_045512v2 3044 C3044T C T . . AC=2;AN=1125 +NC_045512v2 3045 C3045T C T . . AC=1;AN=1125 +NC_045512v2 3049 T3049C T C . . AC=3;AN=1125 +NC_045512v2 3056 G3056A G A . . AC=2;AN=1125 +NC_045512v2 3058 A3058G A G . . AC=1;AN=1125 +NC_045512v2 3069 A3069G A G . . AC=1;AN=1125 +NC_045512v2 3080 G3080A G A . . AC=1;AN=1125 +NC_045512v2 3090 A3090T A T . . AC=1;AN=1125 +NC_045512v2 3091 G3091A G A . . AC=1;AN=1125 +NC_045512v2 3093 C3093T C T . . AC=1;AN=1125 +NC_045512v2 3095 T3095C T C . . AC=1;AN=1125 +NC_045512v2 3096 C3096T C T . . AC=4;AN=1125 +NC_045512v2 3099 C3099T C T . . AC=3;AN=1125 +NC_045512v2 3103 A3103C A C . . AC=2;AN=1125 +NC_045512v2 3118 T3118C T C . . AC=2;AN=1125 +NC_045512v2 3120 A3120C A C . . AC=1;AN=1125 +NC_045512v2 3121 A3121C A C . . AC=1;AN=1125 +NC_045512v2 3122 G3122T G T . . AC=1;AN=1125 +NC_045512v2 3127 T3127C T C . . AC=1;AN=1125 +NC_045512v2 3141 C3141A,C3141T C A,T . . AC=1,1;AN=1125 +NC_045512v2 3146 G3146A G A . . AC=1;AN=1125 +NC_045512v2 3152 G3152A G A . . AC=2;AN=1125 +NC_045512v2 3154 T3154C T C . . AC=2;AN=1125 +NC_045512v2 3155 G3155T G T . . AC=1;AN=1125 +NC_045512v2 3163 T3163C T C . . AC=2;AN=1125 +NC_045512v2 3164 G3164T G T . . AC=1;AN=1125 +NC_045512v2 3170 C3170T C T . . AC=2;AN=1125 +NC_045512v2 3177 C3177T C T . . AC=2;AN=1125 +NC_045512v2 3180 A3180G A G . . AC=1;AN=1125 +NC_045512v2 3230 G3230A G A . . AC=3;AN=1125 +NC_045512v2 3231 G3231T G T . . AC=3;AN=1125 +NC_045512v2 3239 G3239A G A . . AC=2;AN=1125 +NC_045512v2 3242 G3242A G A . . AC=3;AN=1125 +NC_045512v2 3250 G3250T G T . . AC=1;AN=1125 +NC_045512v2 3256 T3256C T C . . AC=2;AN=1125 +NC_045512v2 3259 G3259T G T . . AC=6;AN=1125 +NC_045512v2 3260 A3260G A G . . AC=1;AN=1125 +NC_045512v2 3261 C3261T C T . . AC=3;AN=1125 +NC_045512v2 3264 C3264T C T . . AC=2;AN=1125 +NC_045512v2 3267 C3267T C T . . AC=4;AN=1125 +NC_045512v2 3286 G3286A G A . . AC=1;AN=1125 +NC_045512v2 3287 G3287T G T . . AC=1;AN=1125 +NC_045512v2 3302 G3302A G A . . AC=2;AN=1125 +NC_045512v2 3304 G3304T G T . . AC=1;AN=1125 +NC_045512v2 3323 G3323T G T . . AC=2;AN=1125 +NC_045512v2 3334 T3334A T A . . AC=1;AN=1125 +NC_045512v2 3338 G3338T G T . . AC=2;AN=1125 +NC_045512v2 3340 G3340T G T . . AC=1;AN=1125 +NC_045512v2 3366 T3366C T C . . AC=1;AN=1125 +NC_045512v2 3373 C3373A C A . . AC=10;AN=1125 +NC_045512v2 3397 C3397T C T . . AC=1;AN=1125 +NC_045512v2 3403 G3403T G T . . AC=2;AN=1125 +NC_045512v2 3411 C3411T C T . . AC=9;AN=1125 +NC_045512v2 3413 A3413T A T . . AC=1;AN=1125 +NC_045512v2 3419 G3419A G A . . AC=1;AN=1125 +NC_045512v2 3426 C3426T C T . . AC=3;AN=1125 +NC_045512v2 3429 C3429T C T . . AC=2;AN=1125 +NC_045512v2 3431 G3431T G T . . AC=4;AN=1125 +NC_045512v2 3433 G3433A G A . . AC=1;AN=1125 +NC_045512v2 3482 G3482A G A . . AC=1;AN=1125 +NC_045512v2 3487 C3487T C T . . AC=2;AN=1125 +NC_045512v2 3496 G3496T G T . . AC=1;AN=1125 +NC_045512v2 3499 T3499C T C . . AC=1;AN=1125 +NC_045512v2 3511 C3511T C T . . AC=2;AN=1125 +NC_045512v2 3527 G3527A G A . . AC=1;AN=1125 +NC_045512v2 3535 C3535T C T . . AC=1;AN=1125 +NC_045512v2 3536 A3536G A G . . AC=1;AN=1125 +NC_045512v2 3587 C3587T C T . . AC=1;AN=1125 +NC_045512v2 3602 C3602T C T . . AC=8;AN=1125 +NC_045512v2 3615 T3615C T C . . AC=2;AN=1125 +NC_045512v2 3616 T3616A T A . . AC=1;AN=1125 +NC_045512v2 3619 C3619T C T . . AC=1;AN=1125 +NC_045512v2 3622 C3622T C T . . AC=3;AN=1125 +NC_045512v2 3634 C3634T C T . . AC=2;AN=1125 +NC_045512v2 3638 G3638A,G3638T G A,T . . AC=1,2;AN=1125 +NC_045512v2 3653 C3653T C T . . AC=1;AN=1125 +NC_045512v2 3689 G3689A G A . . AC=3;AN=1125 +NC_045512v2 3694 T3694C T C . . AC=1;AN=1125 +NC_045512v2 3695 C3695T C T . . AC=1;AN=1125 +NC_045512v2 3698 C3698T C T . . AC=1;AN=1125 +NC_045512v2 3712 A3712G A G . . AC=1;AN=1125 +NC_045512v2 3736 C3736T C T . . AC=4;AN=1125 +NC_045512v2 3737 C3737T C T . . AC=3;AN=1125 +NC_045512v2 3738 C3738T C T . . AC=1;AN=1125 +NC_045512v2 3740 A3740G A G . . AC=1;AN=1125 +NC_045512v2 3745 T3745C T C . . AC=1;AN=1125 +NC_045512v2 3755 G3755T G T . . AC=1;AN=1125 +NC_045512v2 3766 T3766C T C . . AC=1;AN=1125 +NC_045512v2 3768 C3768T C T . . AC=3;AN=1125 +NC_045512v2 3776 A3776G A G . . AC=1;AN=1125 +NC_045512v2 3777 C3777T C T . . AC=1;AN=1125 +NC_045512v2 3801 A3801G A G . . AC=1;AN=1125 +NC_045512v2 3811 C3811T C T . . AC=4;AN=1125 +NC_045512v2 3817 C3817T C T . . AC=2;AN=1125 +NC_045512v2 3828 C3828T C T . . AC=4;AN=1125 +NC_045512v2 3831 G3831A G A . . AC=2;AN=1125 +NC_045512v2 3841 A3841T A T . . AC=1;AN=1125 +NC_045512v2 3843 T3843C T C . . AC=1;AN=1125 +NC_045512v2 3849 G3849A G A . . AC=1;AN=1125 +NC_045512v2 3852 A3852T A T . . AC=2;AN=1125 +NC_045512v2 3867 A3867T A T . . AC=1;AN=1125 +NC_045512v2 3871 G3871T G T . . AC=6;AN=1125 +NC_045512v2 3873 T3873C,T3873G T C,G . . AC=2,1;AN=1125 +NC_045512v2 3874 C3874T C T . . AC=1;AN=1125 +NC_045512v2 3880 G3880A G A . . AC=2;AN=1125 +NC_045512v2 3884 C3884T C T . . AC=2;AN=1125 +NC_045512v2 3885 C3885T C T . . AC=2;AN=1125 +NC_045512v2 3892 G3892T G T . . AC=2;AN=1125 +NC_045512v2 3896 G3896T G T . . AC=2;AN=1125 +NC_045512v2 3939 G3939A G A . . AC=1;AN=1125 +NC_045512v2 3952 T3952C T C . . AC=1;AN=1125 +NC_045512v2 3959 A3959G A G . . AC=2;AN=1125 +NC_045512v2 3961 C3961T C T . . AC=3;AN=1125 +NC_045512v2 3969 G3969A G A . . AC=1;AN=1125 +NC_045512v2 3994 G3994A,G3994T G A,T . . AC=3,1;AN=1125 +NC_045512v2 4002 C4002T C T . . AC=20;AN=1125 +NC_045512v2 4006 G4006T G T . . AC=1;AN=1125 +NC_045512v2 4012 C4012T C T . . AC=1;AN=1125 +NC_045512v2 4033 T4033C T C . . AC=2;AN=1125 +NC_045512v2 4044 A4044C A C . . AC=1;AN=1125 +NC_045512v2 4048 C4048T C T . . AC=3;AN=1125 +NC_045512v2 4057 T4057C T C . . AC=2;AN=1125 +NC_045512v2 4084 C4084T C T . . AC=7;AN=1125 +NC_045512v2 4105 G4105A,G4105T G A,T . . AC=1,1;AN=1125 +NC_045512v2 4113 C4113T C T . . AC=5;AN=1125 +NC_045512v2 4125 T4125C T C . . AC=1;AN=1125 +NC_045512v2 4138 T4138G T G . . AC=1;AN=1125 +NC_045512v2 4143 A4143G A G . . AC=1;AN=1125 +NC_045512v2 4148 G4148T G T . . AC=1;AN=1125 +NC_045512v2 4149 T4149C T C . . AC=2;AN=1125 +NC_045512v2 4158 C4158T C T . . AC=1;AN=1125 +NC_045512v2 4181 G4181T G T . . AC=2;AN=1125 +NC_045512v2 4195 T4195A T A . . AC=2;AN=1125 +NC_045512v2 4197 A4197G A G . . AC=2;AN=1125 +NC_045512v2 4198 A4198C A C . . AC=1;AN=1125 +NC_045512v2 4207 G4207T G T . . AC=3;AN=1125 +NC_045512v2 4208 A4208C A C . . AC=2;AN=1125 +NC_045512v2 4228 A4228G A G . . AC=1;AN=1125 +NC_045512v2 4232 G4232T G T . . AC=1;AN=1125 +NC_045512v2 4255 G4255A,G4255T G A,T . . AC=2,2;AN=1125 +NC_045512v2 4276 C4276T C T . . AC=2;AN=1125 +NC_045512v2 4285 G4285A,G4285T G A,T . . AC=1,1;AN=1125 +NC_045512v2 4300 G4300T G T . . AC=4;AN=1125 +NC_045512v2 4303 T4303C T C . . AC=1;AN=1125 +NC_045512v2 4320 C4320T C T . . AC=3;AN=1125 +NC_045512v2 4321 C4321T C T . . AC=3;AN=1125 +NC_045512v2 4324 T4324G T G . . AC=1;AN=1125 +NC_045512v2 4330 T4330C T C . . AC=1;AN=1125 +NC_045512v2 4331 C4331T C T . . AC=1;AN=1125 +NC_045512v2 4346 T4346C T C . . AC=2;AN=1125 +NC_045512v2 4369 T4369C T C . . AC=2;AN=1125 +NC_045512v2 4372 A4372C A C . . AC=1;AN=1125 +NC_045512v2 4391 C4391A C A . . AC=2;AN=1125 +NC_045512v2 4399 G4399T G T . . AC=1;AN=1125 +NC_045512v2 4414 A4414G A G . . AC=1;AN=1125 +NC_045512v2 4441 T4441C T C . . AC=1;AN=1125 +NC_045512v2 4442 G4442T G T . . AC=3;AN=1125 +NC_045512v2 4455 C4455T C T . . AC=3;AN=1125 +NC_045512v2 4456 C4456T C T . . AC=3;AN=1125 +NC_045512v2 4457 A4457G A G . . AC=2;AN=1125 +NC_045512v2 4459 A4459G A G . . AC=1;AN=1125 +NC_045512v2 4485 A4485G A G . . AC=1;AN=1125 +NC_045512v2 4504 G4504T G T . . AC=2;AN=1125 +NC_045512v2 4508 G4508A G A . . AC=1;AN=1125 +NC_045512v2 4510 G4510A,G4510T G A,T . . AC=4,3;AN=1125 +NC_045512v2 4520 G4520T G T . . AC=2;AN=1125 +NC_045512v2 4534 C4534T C T . . AC=1;AN=1125 +NC_045512v2 4540 C4540T C T . . AC=1;AN=1125 +NC_045512v2 4543 C4543T C T . . AC=7;AN=1125 +NC_045512v2 4551 C4551T C T . . AC=1;AN=1125 +NC_045512v2 4570 C4570A C A . . AC=1;AN=1125 +NC_045512v2 4577 C4577T C T . . AC=1;AN=1125 +NC_045512v2 4579 T4579A T A . . AC=2;AN=1125 +NC_045512v2 4582 C4582T C T . . AC=2;AN=1125 +NC_045512v2 4586 C4586T C T . . AC=2;AN=1125 +NC_045512v2 4587 T4587A T A . . AC=1;AN=1125 +NC_045512v2 4596 C4596A C A . . AC=2;AN=1125 +NC_045512v2 4633 C4633T C T . . AC=2;AN=1125 +NC_045512v2 4655 C4655T C T . . AC=1;AN=1125 +NC_045512v2 4657 G4657T G T . . AC=2;AN=1125 +NC_045512v2 4660 T4660C T C . . AC=1;AN=1125 +NC_045512v2 4668 C4668T C T . . AC=1;AN=1125 +NC_045512v2 4672 C4672T C T . . AC=1;AN=1125 +NC_045512v2 4683 C4683T C T . . AC=1;AN=1125 +NC_045512v2 4686 C4686T C T . . AC=1;AN=1125 +NC_045512v2 4698 C4698T C T . . AC=1;AN=1125 +NC_045512v2 4711 T4711C T C . . AC=2;AN=1125 +NC_045512v2 4720 G4720A G A . . AC=1;AN=1125 +NC_045512v2 4754 C4754T C T . . AC=1;AN=1125 +NC_045512v2 4764 A4764G A G . . AC=1;AN=1125 +NC_045512v2 4780 C4780T C T . . AC=1;AN=1125 +NC_045512v2 4784 C4784T C T . . AC=1;AN=1125 +NC_045512v2 4794 C4794T C T . . AC=1;AN=1125 +NC_045512v2 4795 C4795T C T . . AC=2;AN=1125 +NC_045512v2 4809 C4809T C T . . AC=2;AN=1125 +NC_045512v2 4819 A4819G A G . . AC=1;AN=1125 +NC_045512v2 4824 C4824T C T . . AC=1;AN=1125 +NC_045512v2 4838 A4838G A G . . AC=1;AN=1125 +NC_045512v2 4866 G4866T G T . . AC=2;AN=1125 +NC_045512v2 4870 A4870G A G . . AC=1;AN=1125 +NC_045512v2 4871 T4871C T C . . AC=2;AN=1125 +NC_045512v2 4876 C4876T C T . . AC=2;AN=1125 +NC_045512v2 4878 C4878T C T . . AC=3;AN=1125 +NC_045512v2 4886 C4886T C T . . AC=1;AN=1125 +NC_045512v2 4888 T4888A T A . . AC=2;AN=1125 +NC_045512v2 4890 C4890T C T . . AC=1;AN=1125 +NC_045512v2 4891 C4891T C T . . AC=2;AN=1125 +NC_045512v2 4893 C4893T C T . . AC=2;AN=1125 +NC_045512v2 4895 T4895C T C . . AC=1;AN=1125 +NC_045512v2 4897 C4897T C T . . AC=2;AN=1125 +NC_045512v2 4898 C4898T C T . . AC=3;AN=1125 +NC_045512v2 4904 G4904A G A . . AC=2;AN=1125 +NC_045512v2 4918 C4918T C T . . AC=1;AN=1125 +NC_045512v2 4927 C4927T C T . . AC=1;AN=1125 +NC_045512v2 4928 A4928T A T . . AC=1;AN=1125 +NC_045512v2 4935 A4935G A G . . AC=1;AN=1125 +NC_045512v2 4949 T4949C T C . . AC=1;AN=1125 +NC_045512v2 4960 G4960T G T . . AC=5;AN=1125 +NC_045512v2 4965 C4965T C T . . AC=5;AN=1125 +NC_045512v2 4972 G4972A G A . . AC=1;AN=1125 +NC_045512v2 4975 G4975T G T . . AC=1;AN=1125 +NC_045512v2 4999 C4999T C T . . AC=4;AN=1125 +NC_045512v2 5000 C5000T C T . . AC=1;AN=1125 +NC_045512v2 5008 G5008T G T . . AC=2;AN=1125 +NC_045512v2 5015 G5015A G A . . AC=2;AN=1125 +NC_045512v2 5020 C5020T C T . . AC=1;AN=1125 +NC_045512v2 5028 T5028C T C . . AC=1;AN=1125 +NC_045512v2 5029 G5029C G C . . AC=1;AN=1125 +NC_045512v2 5031 C5031T C T . . AC=1;AN=1125 +NC_045512v2 5040 A5040G A G . . AC=2;AN=1125 +NC_045512v2 5059 T5059C T C . . AC=1;AN=1125 +NC_045512v2 5090 C5090T C T . . AC=1;AN=1125 +NC_045512v2 5092 T5092C T C . . AC=1;AN=1125 +NC_045512v2 5101 A5101G A G . . AC=1;AN=1125 +NC_045512v2 5119 T5119C T C . . AC=1;AN=1125 +NC_045512v2 5128 A5128G A G . . AC=1;AN=1125 +NC_045512v2 5140 C5140T C T . . AC=1;AN=1125 +NC_045512v2 5146 A5146G A G . . AC=1;AN=1125 +NC_045512v2 5161 T5161A T A . . AC=1;AN=1125 +NC_045512v2 5170 C5170T C T . . AC=2;AN=1125 +NC_045512v2 5175 C5175T C T . . AC=4;AN=1125 +NC_045512v2 5178 C5178T C T . . AC=1;AN=1125 +NC_045512v2 5182 T5182C T C . . AC=2;AN=1125 +NC_045512v2 5183 C5183T C T . . AC=5;AN=1125 +NC_045512v2 5184 C5184A,C5184T C A,T . . AC=2,2;AN=1125 +NC_045512v2 5192 C5192T C T . . AC=2;AN=1125 +NC_045512v2 5194 G5194T G T . . AC=1;AN=1125 +NC_045512v2 5206 G5206T G T . . AC=2;AN=1125 +NC_045512v2 5221 C5221T C T . . AC=2;AN=1125 +NC_045512v2 5230 G5230T G T . . AC=6;AN=1125 +NC_045512v2 5239 C5239T C T . . AC=1;AN=1125 +NC_045512v2 5240 C5240G C G . . AC=1;AN=1125 +NC_045512v2 5260 T5260A T A . . AC=1;AN=1125 +NC_045512v2 5264 A5264G A G . . AC=2;AN=1125 +NC_045512v2 5277 A5277G A G . . AC=1;AN=1125 +NC_045512v2 5301 C5301T C T . . AC=4;AN=1125 +NC_045512v2 5305 G5305A G A . . AC=1;AN=1125 +NC_045512v2 5310 C5310T C T . . AC=2;AN=1125 +NC_045512v2 5312 C5312T C T . . AC=2;AN=1125 +NC_045512v2 5326 G5326T G T . . AC=2;AN=1125 +NC_045512v2 5329 G5329A G A . . AC=2;AN=1125 +NC_045512v2 5335 T5335C T C . . AC=1;AN=1125 +NC_045512v2 5339 C5339T C T . . AC=2;AN=1125 +NC_045512v2 5347 T5347C T C . . AC=1;AN=1125 +NC_045512v2 5353 A5353G A G . . AC=1;AN=1125 +NC_045512v2 5365 C5365T C T . . AC=3;AN=1125 +NC_045512v2 5368 A5368G A G . . AC=1;AN=1125 +NC_045512v2 5388 C5388A C A . . AC=4;AN=1125 +NC_045512v2 5392 C5392T C T . . AC=1;AN=1125 +NC_045512v2 5416 C5416T C T . . AC=1;AN=1125 +NC_045512v2 5421 A5421G A G . . AC=1;AN=1125 +NC_045512v2 5425 G5425T G T . . AC=2;AN=1125 +NC_045512v2 5452 A5452G A G . . AC=1;AN=1125 +NC_045512v2 5465 T5465C T C . . AC=2;AN=1125 +NC_045512v2 5471 T5471C T C . . AC=1;AN=1125 +NC_045512v2 5482 C5482T C T . . AC=2;AN=1125 +NC_045512v2 5493 C5493T C T . . AC=1;AN=1125 +NC_045512v2 5497 C5497T C T . . AC=1;AN=1125 +NC_045512v2 5504 G5504A G A . . AC=1;AN=1125 +NC_045512v2 5506 C5506T C T . . AC=2;AN=1125 +NC_045512v2 5507 T5507A T A . . AC=2;AN=1125 +NC_045512v2 5538 A5538T A T . . AC=2;AN=1125 +NC_045512v2 5539 G5539A G A . . AC=2;AN=1125 +NC_045512v2 5540 C5540A C A . . AC=1;AN=1125 +NC_045512v2 5544 C5544T C T . . AC=1;AN=1125 +NC_045512v2 5548 C5548T C T . . AC=2;AN=1125 +NC_045512v2 5554 G5554T G T . . AC=2;AN=1125 +NC_045512v2 5572 G5572A,G5572T G A,T . . AC=2,6;AN=1125 +NC_045512v2 5575 C5575T C T . . AC=2;AN=1125 +NC_045512v2 5578 G5578A G A . . AC=1;AN=1125 +NC_045512v2 5585 C5585A C A . . AC=1;AN=1125 +NC_045512v2 5622 C5622T C T . . AC=2;AN=1125 +NC_045512v2 5629 G5629T G T . . AC=6;AN=1125 +NC_045512v2 5648 A5648C A C . . AC=2;AN=1125 +NC_045512v2 5650 A5650G A G . . AC=1;AN=1125 +NC_045512v2 5653 T5653C T C . . AC=2;AN=1125 +NC_045512v2 5674 T5674C T C . . AC=1;AN=1125 +NC_045512v2 5691 C5691T C T . . AC=2;AN=1125 +NC_045512v2 5694 C5694T C T . . AC=2;AN=1125 +NC_045512v2 5695 A5695G A G . . AC=2;AN=1125 +NC_045512v2 5700 C5700A C A . . AC=6;AN=1125 +NC_045512v2 5716 G5716A G A . . AC=2;AN=1125 +NC_045512v2 5717 C5717T C T . . AC=1;AN=1125 +NC_045512v2 5724 C5724T C T . . AC=1;AN=1125 +NC_045512v2 5730 C5730T C T . . AC=4;AN=1125 +NC_045512v2 5747 A5747G A G . . AC=2;AN=1125 +NC_045512v2 5758 C5758T C T . . AC=1;AN=1125 +NC_045512v2 5777 C5777T C T . . AC=1;AN=1125 +NC_045512v2 5780 A5780G A G . . AC=2;AN=1125 +NC_045512v2 5785 T5785A T A . . AC=1;AN=1125 +NC_045512v2 5796 C5796T C T . . AC=2;AN=1125 +NC_045512v2 5806 C5806T C T . . AC=1;AN=1125 +NC_045512v2 5812 C5812T C T . . AC=2;AN=1125 +NC_045512v2 5817 C5817T C T . . AC=1;AN=1125 +NC_045512v2 5829 A5829G A G . . AC=1;AN=1125 +NC_045512v2 5830 G5830A G A . . AC=1;AN=1125 +NC_045512v2 5833 C5833T C T . . AC=1;AN=1125 +NC_045512v2 5855 A5855G A G . . AC=1;AN=1125 +NC_045512v2 5877 A5877G A G . . AC=3;AN=1125 +NC_045512v2 5878 C5878T C T . . AC=1;AN=1125 +NC_045512v2 5884 C5884T C T . . AC=5;AN=1125 +NC_045512v2 5893 C5893T C T . . AC=2;AN=1125 +NC_045512v2 5907 C5907T C T . . AC=3;AN=1125 +NC_045512v2 5924 G5924A G A . . AC=2;AN=1125 +NC_045512v2 5934 C5934T C T . . AC=1;AN=1125 +NC_045512v2 5941 T5941C T C . . AC=2;AN=1125 +NC_045512v2 5950 G5950A,G5950T G A,T . . AC=2,2;AN=1125 +NC_045512v2 5958 A5958G A G . . AC=1;AN=1125 +NC_045512v2 5974 C5974T C T . . AC=1;AN=1125 +NC_045512v2 5979 C5979T C T . . AC=2;AN=1125 +NC_045512v2 5986 C5986T C T . . AC=6;AN=1125 +NC_045512v2 5991 A5991G A G . . AC=1;AN=1125 +NC_045512v2 5999 A5999G A G . . AC=1;AN=1125 +NC_045512v2 6016 C6016T C T . . AC=1;AN=1125 +NC_045512v2 6023 T6023C T C . . AC=1;AN=1125 +NC_045512v2 6025 T6025C T C . . AC=1;AN=1125 +NC_045512v2 6027 C6027T C T . . AC=1;AN=1125 +NC_045512v2 6033 C6033T C T . . AC=1;AN=1125 +NC_045512v2 6035 A6035G A G . . AC=1;AN=1125 +NC_045512v2 6055 T6055C T C . . AC=1;AN=1125 +NC_045512v2 6070 C6070T C T . . AC=2;AN=1125 +NC_045512v2 6077 G6077T G T . . AC=2;AN=1125 +NC_045512v2 6091 C6091T C T . . AC=1;AN=1125 +NC_045512v2 6103 T6103C T C . . AC=1;AN=1125 +NC_045512v2 6114 C6114A,C6114T C A,T . . AC=1,1;AN=1125 +NC_045512v2 6125 G6125A G A . . AC=1;AN=1125 +NC_045512v2 6141 T6141A T A . . AC=1;AN=1125 +NC_045512v2 6190 C6190T C T . . AC=1;AN=1125 +NC_045512v2 6195 C6195T C T . . AC=1;AN=1125 +NC_045512v2 6196 C6196T C T . . AC=2;AN=1125 +NC_045512v2 6268 C6268A,C6268T C A,T . . AC=2,1;AN=1125 +NC_045512v2 6285 C6285T C T . . AC=3;AN=1125 +NC_045512v2 6286 C6286T C T . . AC=54;AN=1125 +NC_045512v2 6288 G6288T G T . . AC=1;AN=1125 +NC_045512v2 6310 C6310T C T . . AC=1;AN=1125 +NC_045512v2 6312 C6312A,C6312T C A,T . . AC=2,2;AN=1125 +NC_045512v2 6317 C6317T C T . . AC=2;AN=1125 +NC_045512v2 6319 A6319G A G . . AC=3;AN=1125 +NC_045512v2 6320 G6320T G T . . AC=1;AN=1125 +NC_045512v2 6336 C6336T C T . . AC=5;AN=1125 +NC_045512v2 6344 G6344T G T . . AC=2;AN=1125 +NC_045512v2 6347 C6347T C T . . AC=1;AN=1125 +NC_045512v2 6351 A6351C A C . . AC=1;AN=1125 +NC_045512v2 6356 G6356A G A . . AC=2;AN=1125 +NC_045512v2 6358 G6358A G A . . AC=1;AN=1125 +NC_045512v2 6360 A6360G A G . . AC=1;AN=1125 +NC_045512v2 6361 C6361T C T . . AC=2;AN=1125 +NC_045512v2 6366 A6366T A T . . AC=2;AN=1125 +NC_045512v2 6375 A6375G A G . . AC=1;AN=1125 +NC_045512v2 6376 T6376A T A . . AC=1;AN=1125 +NC_045512v2 6385 C6385A,C6385T C A,T . . AC=1,1;AN=1125 +NC_045512v2 6387 G6387A G A . . AC=1;AN=1125 +NC_045512v2 6391 A6391G A G . . AC=3;AN=1125 +NC_045512v2 6401 C6401T C T . . AC=5;AN=1125 +NC_045512v2 6402 C6402T C T . . AC=2;AN=1125 +NC_045512v2 6404 G6404T G T . . AC=1;AN=1125 +NC_045512v2 6406 C6406T C T . . AC=2;AN=1125 +NC_045512v2 6407 T6407A T A . . AC=1;AN=1125 +NC_045512v2 6414 A6414G A G . . AC=1;AN=1125 +NC_045512v2 6421 G6421C G C . . AC=1;AN=1125 +NC_045512v2 6441 A6441G A G . . AC=3;AN=1125 +NC_045512v2 6442 A6442G A G . . AC=2;AN=1125 +NC_045512v2 6443 G6443A G A . . AC=1;AN=1125 +NC_045512v2 6445 C6445T C T . . AC=2;AN=1125 +NC_045512v2 6446 G6446T G T . . AC=1;AN=1125 +NC_045512v2 6449 C6449T C T . . AC=3;AN=1125 +NC_045512v2 6461 G6461T G T . . AC=1;AN=1125 +NC_045512v2 6466 A6466G A G . . AC=2;AN=1125 +NC_045512v2 6472 C6472T C T . . AC=2;AN=1125 +NC_045512v2 6476 G6476T G T . . AC=1;AN=1125 +NC_045512v2 6500 C6500T C T . . AC=1;AN=1125 +NC_045512v2 6512 A6512C A C . . AC=2;AN=1125 +NC_045512v2 6525 C6525T C T . . AC=6;AN=1125 +NC_045512v2 6538 C6538T C T . . AC=1;AN=1125 +NC_045512v2 6539 C6539T C T . . AC=2;AN=1125 +NC_045512v2 6541 C6541T C T . . AC=6;AN=1125 +NC_045512v2 6543 C6543T C T . . AC=1;AN=1125 +NC_045512v2 6555 C6555T C T . . AC=1;AN=1125 +NC_045512v2 6558 C6558T C T . . AC=1;AN=1125 +NC_045512v2 6566 G6566T G T . . AC=1;AN=1125 +NC_045512v2 6568 C6568T C T . . AC=2;AN=1125 +NC_045512v2 6573 C6573T C T . . AC=6;AN=1125 +NC_045512v2 6578 C6578T C T . . AC=1;AN=1125 +NC_045512v2 6579 T6579C T C . . AC=1;AN=1125 +NC_045512v2 6582 C6582A,C6582T C A,T . . AC=1,2;AN=1125 +NC_045512v2 6589 G6589A G A . . AC=1;AN=1125 +NC_045512v2 6593 C6593T C T . . AC=1;AN=1125 +NC_045512v2 6606 C6606T C T . . AC=2;AN=1125 +NC_045512v2 6608 A6608G A G . . AC=2;AN=1125 +NC_045512v2 6613 A6613G A G . . AC=2;AN=1125 +NC_045512v2 6616 A6616G A G . . AC=3;AN=1125 +NC_045512v2 6617 G6617T G T . . AC=1;AN=1125 +NC_045512v2 6627 C6627T C T . . AC=4;AN=1125 +NC_045512v2 6628 C6628T C T . . AC=4;AN=1125 +NC_045512v2 6629 C6629T C T . . AC=1;AN=1125 +NC_045512v2 6633 C6633T C T . . AC=2;AN=1125 +NC_045512v2 6636 C6636T C T . . AC=2;AN=1125 +NC_045512v2 6650 G6650T G T . . AC=1;AN=1125 +NC_045512v2 6651 C6651T C T . . AC=1;AN=1125 +NC_045512v2 6659 A6659G A G . . AC=4;AN=1125 +NC_045512v2 6662 G6662A G A . . AC=1;AN=1125 +NC_045512v2 6672 A6672G A G . . AC=1;AN=1125 +NC_045512v2 6673 T6673C T C . . AC=1;AN=1125 +NC_045512v2 6681 C6681T C T . . AC=4;AN=1125 +NC_045512v2 6690 C6690T C T . . AC=1;AN=1125 +NC_045512v2 6696 C6696T C T . . AC=1;AN=1125 +NC_045512v2 6701 C6701T C T . . AC=4;AN=1125 +NC_045512v2 6707 A6707G A G . . AC=1;AN=1125 +NC_045512v2 6709 A6709G A G . . AC=2;AN=1125 +NC_045512v2 6723 C6723T C T . . AC=2;AN=1125 +NC_045512v2 6726 C6726T C T . . AC=2;AN=1125 +NC_045512v2 6730 C6730T C T . . AC=1;AN=1125 +NC_045512v2 6738 C6738T C T . . AC=1;AN=1125 +NC_045512v2 6762 C6762T C T . . AC=1;AN=1125 +NC_045512v2 6781 C6781T C T . . AC=3;AN=1125 +NC_045512v2 6794 C6794T C T . . AC=1;AN=1125 +NC_045512v2 6813 C6813T C T . . AC=1;AN=1125 +NC_045512v2 6843 C6843T C T . . AC=2;AN=1125 +NC_045512v2 6861 C6861T C T . . AC=1;AN=1125 +NC_045512v2 6877 G6877T G T . . AC=1;AN=1125 +NC_045512v2 6883 C6883T C T . . AC=5;AN=1125 +NC_045512v2 6884 G6884A G A . . AC=1;AN=1125 +NC_045512v2 6889 A6889C A C . . AC=2;AN=1125 +NC_045512v2 6892 T6892C T C . . AC=1;AN=1125 +NC_045512v2 6896 C6896T C T . . AC=1;AN=1125 +NC_045512v2 6900 A6900G A G . . AC=2;AN=1125 +NC_045512v2 6905 T6905G T G . . AC=2;AN=1125 +NC_045512v2 6934 T6934C T C . . AC=2;AN=1125 +NC_045512v2 6941 C6941T C T . . AC=6;AN=1125 +NC_045512v2 6949 T6949C T C . . AC=1;AN=1125 +NC_045512v2 6954 T6954C T C . . AC=4;AN=1125 +NC_045512v2 6983 C6983T C T . . AC=2;AN=1125 +NC_045512v2 6989 T6989C T C . . AC=1;AN=1125 +NC_045512v2 6990 C6990T C T . . AC=6;AN=1125 +NC_045512v2 7009 T7009A T A . . AC=1;AN=1125 +NC_045512v2 7011 C7011T C T . . AC=1;AN=1125 +NC_045512v2 7031 A7031G A G . . AC=2;AN=1125 +NC_045512v2 7034 T7034C T C . . AC=1;AN=1125 +NC_045512v2 7037 G7037A,G7037T G A,T . . AC=2,1;AN=1125 +NC_045512v2 7040 A7040T A T . . AC=1;AN=1125 +NC_045512v2 7042 G7042T G T . . AC=6;AN=1125 +NC_045512v2 7081 C7081T C T . . AC=1;AN=1125 +NC_045512v2 7095 C7095T C T . . AC=2;AN=1125 +NC_045512v2 7113 C7113T C T . . AC=2;AN=1125 +NC_045512v2 7132 T7132C T C . . AC=1;AN=1125 +NC_045512v2 7162 C7162T C T . . AC=1;AN=1125 +NC_045512v2 7168 T7168C T C . . AC=1;AN=1125 +NC_045512v2 7169 C7169T C T . . AC=1;AN=1125 +NC_045512v2 7173 C7173T C T . . AC=1;AN=1125 +NC_045512v2 7185 T7185C T C . . AC=1;AN=1125 +NC_045512v2 7200 C7200T C T . . AC=1;AN=1125 +NC_045512v2 7209 A7209G A G . . AC=1;AN=1125 +NC_045512v2 7224 C7224T C T . . AC=1;AN=1125 +NC_045512v2 7258 T7258C T C . . AC=1;AN=1125 +NC_045512v2 7267 C7267T C T . . AC=3;AN=1125 +NC_045512v2 7279 C7279T C T . . AC=3;AN=1125 +NC_045512v2 7291 A7291G A G . . AC=2;AN=1125 +NC_045512v2 7292 T7292C T C . . AC=2;AN=1125 +NC_045512v2 7295 G7295T G T . . AC=2;AN=1125 +NC_045512v2 7303 C7303T C T . . AC=2;AN=1125 +NC_045512v2 7318 C7318T C T . . AC=2;AN=1125 +NC_045512v2 7319 A7319G A G . . AC=1;AN=1125 +NC_045512v2 7320 G7320A G A . . AC=1;AN=1125 +NC_045512v2 7328 G7328T G T . . AC=2;AN=1125 +NC_045512v2 7332 T7332C T C . . AC=2;AN=1125 +NC_045512v2 7360 G7360T G T . . AC=1;AN=1125 +NC_045512v2 7393 G7393T G T . . AC=1;AN=1125 +NC_045512v2 7396 T7396C T C . . AC=1;AN=1125 +NC_045512v2 7405 G7405T G T . . AC=1;AN=1125 +NC_045512v2 7423 C7423T C T . . AC=1;AN=1125 +NC_045512v2 7426 T7426C T C . . AC=1;AN=1125 +NC_045512v2 7438 T7438C T C . . AC=2;AN=1125 +NC_045512v2 7441 T7441C T C . . AC=1;AN=1125 +NC_045512v2 7452 G7452T G T . . AC=1;AN=1125 +NC_045512v2 7471 C7471T C T . . AC=1;AN=1125 +NC_045512v2 7483 A7483G A G . . AC=1;AN=1125 +NC_045512v2 7488 C7488T C T . . AC=1;AN=1125 +NC_045512v2 7504 C7504T C T . . AC=2;AN=1125 +NC_045512v2 7528 C7528T C T . . AC=10;AN=1125 +NC_045512v2 7540 T7540C T C . . AC=3;AN=1125 +NC_045512v2 7549 T7549C T C . . AC=1;AN=1125 +NC_045512v2 7557 G7557A G A . . AC=2;AN=1125 +NC_045512v2 7564 C7564T C T . . AC=3;AN=1125 +NC_045512v2 7582 T7582C T C . . AC=1;AN=1125 +NC_045512v2 7600 C7600T C T . . AC=2;AN=1125 +NC_045512v2 7645 T7645C T C . . AC=1;AN=1125 +NC_045512v2 7675 G7675T G T . . AC=2;AN=1125 +NC_045512v2 7720 C7720T C T . . AC=1;AN=1125 +NC_045512v2 7728 C7728T C T . . AC=3;AN=1125 +NC_045512v2 7732 C7732T C T . . AC=2;AN=1125 +NC_045512v2 7735 C7735T C T . . AC=4;AN=1125 +NC_045512v2 7749 C7749T C T . . AC=1;AN=1125 +NC_045512v2 7761 G7761A G A . . AC=1;AN=1125 +NC_045512v2 7764 C7764T C T . . AC=1;AN=1125 +NC_045512v2 7765 C7765T C T . . AC=9;AN=1125 +NC_045512v2 7767 T7767C T C . . AC=25;AN=1125 +NC_045512v2 7768 C7768T C T . . AC=4;AN=1125 +NC_045512v2 7783 T7783C T C . . AC=2;AN=1125 +NC_045512v2 7792 T7792C T C . . AC=2;AN=1125 +NC_045512v2 7798 G7798T G T . . AC=7;AN=1125 +NC_045512v2 7813 T7813C T C . . AC=1;AN=1125 +NC_045512v2 7814 T7814C T C . . AC=1;AN=1125 +NC_045512v2 7815 C7815T C T . . AC=2;AN=1125 +NC_045512v2 7831 T7831A T A . . AC=2;AN=1125 +NC_045512v2 7834 C7834T C T . . AC=4;AN=1125 +NC_045512v2 7843 C7843T C T . . AC=2;AN=1125 +NC_045512v2 7844 C7844T C T . . AC=3;AN=1125 +NC_045512v2 7851 C7851T C T . . AC=2;AN=1125 +NC_045512v2 7863 A7863G A G . . AC=1;AN=1125 +NC_045512v2 7869 C7869T C T . . AC=1;AN=1125 +NC_045512v2 7884 T7884C T C . . AC=1;AN=1125 +NC_045512v2 7919 T7919G T G . . AC=2;AN=1125 +NC_045512v2 7932 C7932T C T . . AC=1;AN=1125 +NC_045512v2 7936 G7936A,G7936T G A,T . . AC=1,3;AN=1125 +NC_045512v2 7945 C7945T C T . . AC=1;AN=1125 +NC_045512v2 7954 G7954T G T . . AC=4;AN=1125 +NC_045512v2 7955 C7955T C T . . AC=1;AN=1125 +NC_045512v2 8008 T8008C T C . . AC=1;AN=1125 +NC_045512v2 8015 G8015A G A . . AC=1;AN=1125 +NC_045512v2 8016 C8016T C T . . AC=1;AN=1125 +NC_045512v2 8017 G8017T G T . . AC=3;AN=1125 +NC_045512v2 8025 C8025T C T . . AC=2;AN=1125 +NC_045512v2 8031 A8031G A G . . AC=3;AN=1125 +NC_045512v2 8040 A8040G A G . . AC=1;AN=1125 +NC_045512v2 8041 T8041C T C . . AC=2;AN=1125 +NC_045512v2 8047 C8047T C T . . AC=25;AN=1125 +NC_045512v2 8072 A8072G A G . . AC=4;AN=1125 +NC_045512v2 8082 T8082C T C . . AC=1;AN=1125 +NC_045512v2 8084 G8084A G A . . AC=1;AN=1125 +NC_045512v2 8092 C8092T C T . . AC=1;AN=1125 +NC_045512v2 8102 G8102T G T . . AC=1;AN=1125 +NC_045512v2 8109 C8109T C T . . AC=1;AN=1125 +NC_045512v2 8110 T8110C T C . . AC=2;AN=1125 +NC_045512v2 8114 G8114A G A . . AC=1;AN=1125 +NC_045512v2 8120 G8120C G C . . AC=2;AN=1125 +NC_045512v2 8131 G8131T G T . . AC=3;AN=1125 +NC_045512v2 8133 A8133G A G . . AC=1;AN=1125 +NC_045512v2 8139 C8139T C T . . AC=2;AN=1125 +NC_045512v2 8140 C8140T C T . . AC=2;AN=1125 +NC_045512v2 8171 G8171A G A . . AC=1;AN=1125 +NC_045512v2 8179 G8179T G T . . AC=2;AN=1125 +NC_045512v2 8208 C8208T C T . . AC=1;AN=1125 +NC_045512v2 8213 G8213A G A . . AC=1;AN=1125 +NC_045512v2 8233 A8233G A G . . AC=1;AN=1125 +NC_045512v2 8240 C8240T C T . . AC=2;AN=1125 +NC_045512v2 8244 A8244G A G . . AC=2;AN=1125 +NC_045512v2 8252 A8252G A G . . AC=2;AN=1125 +NC_045512v2 8264 G8264T G T . . AC=1;AN=1125 +NC_045512v2 8290 C8290T C T . . AC=5;AN=1125 +NC_045512v2 8293 C8293T C T . . AC=3;AN=1125 +NC_045512v2 8296 T8296C T C . . AC=2;AN=1125 +NC_045512v2 8299 C8299T C T . . AC=1;AN=1125 +NC_045512v2 8318 C8318A C A . . AC=1;AN=1125 +NC_045512v2 8320 C8320T C T . . AC=2;AN=1125 +NC_045512v2 8323 T8323C T C . . AC=2;AN=1125 +NC_045512v2 8326 C8326T C T . . AC=2;AN=1125 +NC_045512v2 8327 C8327T C T . . AC=2;AN=1125 +NC_045512v2 8334 C8334T C T . . AC=2;AN=1125 +NC_045512v2 8357 C8357T C T . . AC=1;AN=1125 +NC_045512v2 8371 G8371A,G8371T G A,T . . AC=1,8;AN=1125 +NC_045512v2 8374 A8374T A T . . AC=1;AN=1125 +NC_045512v2 8389 C8389T C T . . AC=11;AN=1125 +NC_045512v2 8390 A8390G A G . . AC=1;AN=1125 +NC_045512v2 8394 C8394T C T . . AC=1;AN=1125 +NC_045512v2 8408 G8408A G A . . AC=2;AN=1125 +NC_045512v2 8410 T8410C T C . . AC=2;AN=1125 +NC_045512v2 8413 A8413G A G . . AC=1;AN=1125 +NC_045512v2 8416 T8416C T C . . AC=1;AN=1125 +NC_045512v2 8559 T8559A T A . . AC=1;AN=1125 +NC_045512v2 8561 G8561A G A . . AC=1;AN=1125 +NC_045512v2 8565 A8565C A C . . AC=1;AN=1125 +NC_045512v2 8578 G8578A,G8578T G A,T . . AC=1,2;AN=1125 +NC_045512v2 8591 G8591T G T . . AC=1;AN=1125 +NC_045512v2 8593 T8593C T C . . AC=2;AN=1125 +NC_045512v2 8603 T8603C T C . . AC=2;AN=1125 +NC_045512v2 8605 C8605T C T . . AC=1;AN=1125 +NC_045512v2 8618 G8618A G A . . AC=2;AN=1125 +NC_045512v2 8626 C8626T C T . . AC=1;AN=1125 +NC_045512v2 8634 T8634C T C . . AC=1;AN=1125 +NC_045512v2 8637 C8637T C T . . AC=1;AN=1125 +NC_045512v2 8650 C8650T C T . . AC=1;AN=1125 +NC_045512v2 8655 C8655T C T . . AC=1;AN=1125 +NC_045512v2 8662 T8662C T C . . AC=1;AN=1125 +NC_045512v2 8664 C8664A,C8664T C A,T . . AC=1,2;AN=1125 +NC_045512v2 8681 A8681G A G . . AC=1;AN=1125 +NC_045512v2 8683 C8683T C T . . AC=5;AN=1125 +NC_045512v2 8697 C8697T C T . . AC=1;AN=1125 +NC_045512v2 8733 C8733T C T . . AC=2;AN=1125 +NC_045512v2 8734 A8734G A G . . AC=1;AN=1125 +NC_045512v2 8752 C8752T C T . . AC=1;AN=1125 +NC_045512v2 8773 A8773G A G . . AC=2;AN=1125 +NC_045512v2 8788 T8788C T C . . AC=2;AN=1125 +NC_045512v2 8800 T8800C T C . . AC=2;AN=1125 +NC_045512v2 8802 C8802T C T . . AC=1;AN=1125 +NC_045512v2 8814 C8814T C T . . AC=1;AN=1125 +NC_045512v2 8818 C8818T C T . . AC=3;AN=1125 +NC_045512v2 8821 A8821G A G . . AC=2;AN=1125 +NC_045512v2 8851 G8851A G A . . AC=1;AN=1125 +NC_045512v2 8861 G8861T G T . . AC=2;AN=1125 +NC_045512v2 8884 A8884G A G . . AC=2;AN=1125 +NC_045512v2 8895 C8895T C T . . AC=1;AN=1125 +NC_045512v2 8905 C8905T C T . . AC=1;AN=1125 +NC_045512v2 8917 C8917T C T . . AC=6;AN=1125 +NC_045512v2 8941 T8941C T C . . AC=1;AN=1125 +NC_045512v2 8944 T8944C T C . . AC=1;AN=1125 +NC_045512v2 8947 C8947T C T . . AC=2;AN=1125 +NC_045512v2 8950 C8950T C T . . AC=2;AN=1125 +NC_045512v2 8956 C8956T C T . . AC=1;AN=1125 +NC_045512v2 8964 C8964T C T . . AC=1;AN=1125 +NC_045512v2 8983 T8983G T G . . AC=2;AN=1125 +NC_045512v2 8986 C8986T C T . . AC=2;AN=1125 +NC_045512v2 8991 C8991T C T . . AC=2;AN=1125 +NC_045512v2 8993 A8993G A G . . AC=1;AN=1125 +NC_045512v2 9024 C9024T C T . . AC=1;AN=1125 +NC_045512v2 9049 G9049T G T . . AC=2;AN=1125 +NC_045512v2 9070 T9070C T C . . AC=3;AN=1125 +NC_045512v2 9072 C9072T C T . . AC=1;AN=1125 +NC_045512v2 9073 C9073T C T . . AC=1;AN=1125 +NC_045512v2 9092 G9092A G A . . AC=1;AN=1125 +NC_045512v2 9107 T9107C T C . . AC=2;AN=1125 +NC_045512v2 9111 G9111A G A . . AC=1;AN=1125 +NC_045512v2 9112 C9112T C T . . AC=1;AN=1125 +NC_045512v2 9118 C9118T C T . . AC=1;AN=1125 +NC_045512v2 9120 C9120T C T . . AC=4;AN=1125 +NC_045512v2 9130 G9130A,G9130T G A,T . . AC=1,3;AN=1125 +NC_045512v2 9142 C9142T C T . . AC=1;AN=1125 +NC_045512v2 9151 T9151C T C . . AC=2;AN=1125 +NC_045512v2 9165 C9165T C T . . AC=2;AN=1125 +NC_045512v2 9172 T9172C T C . . AC=2;AN=1125 +NC_045512v2 9180 C9180T C T . . AC=1;AN=1125 +NC_045512v2 9190 G9190T G T . . AC=3;AN=1125 +NC_045512v2 9195 C9195T C T . . AC=1;AN=1125 +NC_045512v2 9204 A9204G A G . . AC=3;AN=1125 +NC_045512v2 9207 C9207T C T . . AC=1;AN=1125 +NC_045512v2 9220 G9220A G A . . AC=1;AN=1125 +NC_045512v2 9226 C9226T C T . . AC=1;AN=1125 +NC_045512v2 9246 C9246T C T . . AC=3;AN=1125 +NC_045512v2 9272 A9272C A C . . AC=1;AN=1125 +NC_045512v2 9278 G9278A G A . . AC=1;AN=1125 +NC_045512v2 9286 C9286T C T . . AC=8;AN=1125 +NC_045512v2 9292 T9292C T C . . AC=1;AN=1125 +NC_045512v2 9298 C9298T C T . . AC=3;AN=1125 +NC_045512v2 9314 G9314A G A . . AC=1;AN=1125 +NC_045512v2 9319 C9319T C T . . AC=1;AN=1125 +NC_045512v2 9337 A9337G A G . . AC=2;AN=1125 +NC_045512v2 9344 C9344T C T . . AC=2;AN=1125 +NC_045512v2 9360 C9360T C T . . AC=2;AN=1125 +NC_045512v2 9361 A9361T A T . . AC=1;AN=1125 +NC_045512v2 9379 T9379A T A . . AC=1;AN=1125 +NC_045512v2 9389 G9389A G A . . AC=2;AN=1125 +NC_045512v2 9397 A9397G A G . . AC=1;AN=1125 +NC_045512v2 9398 G9398T G T . . AC=1;AN=1125 +NC_045512v2 9409 A9409G A G . . AC=1;AN=1125 +NC_045512v2 9425 G9425T G T . . AC=1;AN=1125 +NC_045512v2 9430 C9430T C T . . AC=11;AN=1125 +NC_045512v2 9433 A9433T A T . . AC=1;AN=1125 +NC_045512v2 9436 A9436T A T . . AC=1;AN=1125 +NC_045512v2 9438 C9438T C T . . AC=6;AN=1125 +NC_045512v2 9440 T9440G T G . . AC=1;AN=1125 +NC_045512v2 9448 C9448T C T . . AC=1;AN=1125 +NC_045512v2 9474 C9474T C T . . AC=1;AN=1125 +NC_045512v2 9485 T9485C T C . . AC=1;AN=1125 +NC_045512v2 9491 C9491T C T . . AC=1;AN=1125 +NC_045512v2 9492 A9492C A C . . AC=1;AN=1125 +NC_045512v2 9510 C9510T C T . . AC=1;AN=1125 +NC_045512v2 9521 C9521A C A . . AC=2;AN=1125 +NC_045512v2 9526 G9526T G T . . AC=7;AN=1125 +NC_045512v2 9559 C9559T C T . . AC=2;AN=1125 +NC_045512v2 9561 C9561T C T . . AC=2;AN=1125 +NC_045512v2 9565 C9565T C T . . AC=1;AN=1125 +NC_045512v2 9575 G9575A G A . . AC=1;AN=1125 +NC_045512v2 9650 A9650G A G . . AC=1;AN=1125 +NC_045512v2 9651 T9651G T G . . AC=1;AN=1125 +NC_045512v2 9655 T9655C T C . . AC=1;AN=1125 +NC_045512v2 9658 G9658T G T . . AC=1;AN=1125 +NC_045512v2 9693 C9693T C T . . AC=6;AN=1125 +NC_045512v2 9694 T9694C T C . . AC=1;AN=1125 +NC_045512v2 9697 T9697C T C . . AC=2;AN=1125 +NC_045512v2 9705 G9705T G T . . AC=2;AN=1125 +NC_045512v2 9708 T9708C T C . . AC=1;AN=1125 +NC_045512v2 9737 A9737G A G . . AC=1;AN=1125 +NC_045512v2 9738 G9738C G C . . AC=2;AN=1125 +NC_045512v2 9742 T9742C T C . . AC=2;AN=1125 +NC_045512v2 9745 C9745T C T . . AC=1;AN=1125 +NC_045512v2 9802 G9802T G T . . AC=2;AN=1125 +NC_045512v2 9803 C9803A,C9803T C A,T . . AC=2,2;AN=1125 +NC_045512v2 9805 G9805T G T . . AC=1;AN=1125 +NC_045512v2 9811 C9811T C T . . AC=1;AN=1125 +NC_045512v2 9830 A9830G A G . . AC=1;AN=1125 +NC_045512v2 9857 C9857A,C9857T C A,T . . AC=1,2;AN=1125 +NC_045512v2 9859 A9859G A G . . AC=1;AN=1125 +NC_045512v2 9891 C9891T C T . . AC=3;AN=1125 +NC_045512v2 9907 C9907T C T . . AC=2;AN=1125 +NC_045512v2 9924 C9924T C T . . AC=3;AN=1125 +NC_045512v2 9928 G9928T G T . . AC=4;AN=1125 +NC_045512v2 9935 A9935G A G . . AC=1;AN=1125 +NC_045512v2 9967 C9967T C T . . AC=5;AN=1125 +NC_045512v2 9968 G9968T G T . . AC=2;AN=1125 +NC_045512v2 9979 C9979T C T . . AC=3;AN=1125 +NC_045512v2 9984 A9984C A C . . AC=3;AN=1125 +NC_045512v2 9996 C9996T C T . . AC=1;AN=1125 +NC_045512v2 9997 A9997C A C . . AC=1;AN=1125 +NC_045512v2 10029 C10029T C T . . AC=1;AN=1125 +NC_045512v2 10039 C10039A,C10039T C A,T . . AC=1,1;AN=1125 +NC_045512v2 10074 C10074T C T . . AC=1;AN=1125 +NC_045512v2 10078 C10078T C T . . AC=2;AN=1125 +NC_045512v2 10096 G10096A G A . . AC=1;AN=1125 +NC_045512v2 10097 G10097A G A . . AC=20;AN=1125 +NC_045512v2 10116 C10116T C T . . AC=4;AN=1125 +NC_045512v2 10128 C10128T C T . . AC=1;AN=1125 +NC_045512v2 10138 C10138T C T . . AC=1;AN=1125 +NC_045512v2 10156 C10156T C T . . AC=3;AN=1125 +NC_045512v2 10190 T10190C T C . . AC=1;AN=1125 +NC_045512v2 10200 T10200C T C . . AC=2;AN=1125 +NC_045512v2 10228 C10228T C T . . AC=2;AN=1125 +NC_045512v2 10248 A10248G A G . . AC=1;AN=1125 +NC_045512v2 10249 T10249C T C . . AC=1;AN=1125 +NC_045512v2 10252 C10252T C T . . AC=4;AN=1125 +NC_045512v2 10255 G10255T G T . . AC=1;AN=1125 +NC_045512v2 10260 A10260G A G . . AC=2;AN=1125 +NC_045512v2 10262 G10262A G A . . AC=2;AN=1125 +NC_045512v2 10265 G10265A G A . . AC=8;AN=1125 +NC_045512v2 10277 C10277T C T . . AC=2;AN=1125 +NC_045512v2 10279 C10279T C T . . AC=4;AN=1125 +NC_045512v2 10286 A10286G A G . . AC=2;AN=1125 +NC_045512v2 10288 T10288C T C . . AC=1;AN=1125 +NC_045512v2 10296 C10296T C T . . AC=1;AN=1125 +NC_045512v2 10301 C10301A C A . . AC=2;AN=1125 +NC_045512v2 10319 C10319T C T . . AC=3;AN=1125 +NC_045512v2 10321 T10321C T C . . AC=1;AN=1125 +NC_045512v2 10323 A10323G A G . . AC=14;AN=1125 +NC_045512v2 10324 G10324T G T . . AC=1;AN=1125 +NC_045512v2 10335 C10335T C T . . AC=1;AN=1125 +NC_045512v2 10341 C10341T C T . . AC=1;AN=1125 +NC_045512v2 10350 C10350T C T . . AC=1;AN=1125 +NC_045512v2 10369 C10369T C T . . AC=9;AN=1125 +NC_045512v2 10376 C10376T C T . . AC=8;AN=1125 +NC_045512v2 10377 C10377T C T . . AC=1;AN=1125 +NC_045512v2 10399 A10399G A G . . AC=2;AN=1125 +NC_045512v2 10408 C10408T C T . . AC=1;AN=1125 +NC_045512v2 10417 A10417G A G . . AC=1;AN=1125 +NC_045512v2 10440 C10440T C T . . AC=5;AN=1125 +NC_045512v2 10448 C10448T C T . . AC=1;AN=1125 +NC_045512v2 10450 C10450T C T . . AC=2;AN=1125 +NC_045512v2 10456 C10456T C T . . AC=2;AN=1125 +NC_045512v2 10458 C10458T C T . . AC=2;AN=1125 +NC_045512v2 10474 C10474T C T . . AC=1;AN=1125 +NC_045512v2 10480 T10480C T C . . AC=1;AN=1125 +NC_045512v2 10507 C10507T C T . . AC=5;AN=1125 +NC_045512v2 10513 T10513C T C . . AC=2;AN=1125 +NC_045512v2 10523 G10523C G C . . AC=1;AN=1125 +NC_045512v2 10525 C10525T C T . . AC=2;AN=1125 +NC_045512v2 10540 G10540A G A . . AC=1;AN=1125 +NC_045512v2 10552 A10552G A G . . AC=2;AN=1125 +NC_045512v2 10561 T10561C T C . . AC=2;AN=1125 +NC_045512v2 10565 G10565A G A . . AC=1;AN=1125 +NC_045512v2 10582 C10582T C T . . AC=6;AN=1125 +NC_045512v2 10594 C10594T C T . . AC=2;AN=1125 +NC_045512v2 10615 C10615T C T . . AC=2;AN=1125 +NC_045512v2 10626 C10626T C T . . AC=3;AN=1125 +NC_045512v2 10631 G10631T G T . . AC=2;AN=1125 +NC_045512v2 10641 C10641T C T . . AC=2;AN=1125 +NC_045512v2 10645 C10645T C T . . AC=1;AN=1125 +NC_045512v2 10667 T10667G T G . . AC=2;AN=1125 +NC_045512v2 10681 C10681T C T . . AC=1;AN=1125 +NC_045512v2 10688 G10688T G T . . AC=2;AN=1125 +NC_045512v2 10702 C10702T C T . . AC=1;AN=1125 +NC_045512v2 10705 G10705T G T . . AC=2;AN=1125 +NC_045512v2 10712 C10712T C T . . AC=2;AN=1125 +NC_045512v2 10720 A10720G A G . . AC=2;AN=1125 +NC_045512v2 10724 A10724G A G . . AC=1;AN=1125 +NC_045512v2 10732 T10732C T C . . AC=1;AN=1125 +NC_045512v2 10741 C10741T C T . . AC=1;AN=1125 +NC_045512v2 10747 C10747T C T . . AC=2;AN=1125 +NC_045512v2 10753 G10753A G A . . AC=2;AN=1125 +NC_045512v2 10755 C10755T C T . . AC=2;AN=1125 +NC_045512v2 10759 G10759T G T . . AC=1;AN=1125 +NC_045512v2 10770 A10770G A G . . AC=1;AN=1125 +NC_045512v2 10771 T10771C T C . . AC=1;AN=1125 +NC_045512v2 10781 A10781G A G . . AC=1;AN=1125 +NC_045512v2 10786 A10786G A G . . AC=2;AN=1125 +NC_045512v2 10789 C10789T C T . . AC=2;AN=1125 +NC_045512v2 10793 G10793T G T . . AC=2;AN=1125 +NC_045512v2 10795 T10795C T C . . AC=2;AN=1125 +NC_045512v2 10815 C10815T C T . . AC=2;AN=1125 +NC_045512v2 10818 C10818T C T . . AC=1;AN=1125 +NC_045512v2 10833 C10833T C T . . AC=4;AN=1125 +NC_045512v2 10851 C10851T C T . . AC=2;AN=1125 +NC_045512v2 10868 C10868T C T . . AC=2;AN=1125 +NC_045512v2 10870 G10870T G T . . AC=5;AN=1125 +NC_045512v2 10874 A10874G A G . . AC=3;AN=1125 +NC_045512v2 10880 A10880G A G . . AC=2;AN=1125 +NC_045512v2 10886 G10886A G A . . AC=2;AN=1125 +NC_045512v2 10902 G10902A G A . . AC=2;AN=1125 +NC_045512v2 10904 A10904G A G . . AC=2;AN=1125 +NC_045512v2 10912 A10912G A G . . AC=1;AN=1125 +NC_045512v2 10939 T10939C T C . . AC=1;AN=1125 +NC_045512v2 10948 A10948G A G . . AC=4;AN=1125 +NC_045512v2 10956 C10956T C T . . AC=1;AN=1125 +NC_045512v2 10960 T10960C T C . . AC=1;AN=1125 +NC_045512v2 10963 T10963A T A . . AC=1;AN=1125 +NC_045512v2 10969 C10969T C T . . AC=1;AN=1125 +NC_045512v2 10977 C10977T C T . . AC=1;AN=1125 +NC_045512v2 10978 A10978T A T . . AC=5;AN=1125 +NC_045512v2 10996 G10996T G T . . AC=1;AN=1125 +NC_045512v2 11003 C11003T C T . . AC=3;AN=1125 +NC_045512v2 11005 C11005A C A . . AC=1;AN=1125 +NC_045512v2 11008 C11008T C T . . AC=1;AN=1125 +NC_045512v2 11020 C11020T C T . . AC=1;AN=1125 +NC_045512v2 11023 A11023G A G . . AC=1;AN=1125 +NC_045512v2 11050 C11050A C A . . AC=2;AN=1125 +NC_045512v2 11061 A11061G A G . . AC=2;AN=1125 +NC_045512v2 11078 T11078C T C . . AC=1;AN=1125 +NC_045512v2 11095 C11095T C T . . AC=1;AN=1125 +NC_045512v2 11102 C11102T C T . . AC=3;AN=1125 +NC_045512v2 11109 C11109T C T . . AC=6;AN=1125 +NC_045512v2 11113 G11113A G A . . AC=1;AN=1125 +NC_045512v2 11120 A11120G A G . . AC=2;AN=1125 +NC_045512v2 11131 T11131A T A . . AC=1;AN=1125 +NC_045512v2 11132 G11132T G T . . AC=2;AN=1125 +NC_045512v2 11146 G11146T G T . . AC=1;AN=1125 +NC_045512v2 11152 C11152T C T . . AC=1;AN=1125 +NC_045512v2 11164 T11164G T G . . AC=1;AN=1125 +NC_045512v2 11195 C11195T C T . . AC=1;AN=1125 +NC_045512v2 11221 G11221T G T . . AC=2;AN=1125 +NC_045512v2 11224 C11224T C T . . AC=1;AN=1125 +NC_045512v2 11230 G11230T G T . . AC=5;AN=1125 +NC_045512v2 11243 G11243T G T . . AC=2;AN=1125 +NC_045512v2 11246 A11246T A T . . AC=2;AN=1125 +NC_045512v2 11259 C11259T C T . . AC=3;AN=1125 +NC_045512v2 11266 G11266A G A . . AC=2;AN=1125 +NC_045512v2 11273 G11273A G A . . AC=1;AN=1125 +NC_045512v2 11305 A11305G A G . . AC=1;AN=1125 +NC_045512v2 11308 C11308T C T . . AC=4;AN=1125 +NC_045512v2 11310 G11310A G A . . AC=1;AN=1125 +NC_045512v2 11339 C11339T C T . . AC=1;AN=1125 +NC_045512v2 11345 C11345T C T . . AC=1;AN=1125 +NC_045512v2 11348 A11348G A G . . AC=2;AN=1125 +NC_045512v2 11365 G11365A G A . . AC=2;AN=1125 +NC_045512v2 11379 C11379T C T . . AC=2;AN=1125 +NC_045512v2 11396 C11396A,C11396T C A,T . . AC=1,1;AN=1125 +NC_045512v2 11401 G11401T G T . . AC=2;AN=1125 +NC_045512v2 11410 G11410A G A . . AC=1;AN=1125 +NC_045512v2 11417 G11417T G T . . AC=8;AN=1125 +NC_045512v2 11425 A11425T A T . . AC=1;AN=1125 +NC_045512v2 11430 A11430G A G . . AC=2;AN=1125 +NC_045512v2 11438 A11438G A G . . AC=1;AN=1125 +NC_045512v2 11447 G11447A G A . . AC=2;AN=1125 +NC_045512v2 11449 T11449C T C . . AC=1;AN=1125 +NC_045512v2 11460 C11460T C T . . AC=1;AN=1125 +NC_045512v2 11490 C11490T C T . . AC=1;AN=1125 +NC_045512v2 11494 C11494T C T . . AC=2;AN=1125 +NC_045512v2 11497 C11497T C T . . AC=6;AN=1125 +NC_045512v2 11514 C11514T C T . . AC=2;AN=1125 +NC_045512v2 11521 G11521T G T . . AC=2;AN=1125 +NC_045512v2 11522 T11522G T G . . AC=1;AN=1125 +NC_045512v2 11540 G11540T G T . . AC=1;AN=1125 +NC_045512v2 11546 A11546G A G . . AC=1;AN=1125 +NC_045512v2 11552 G11552T G T . . AC=1;AN=1125 +NC_045512v2 11572 C11572T C T . . AC=3;AN=1125 +NC_045512v2 11575 C11575T C T . . AC=2;AN=1125 +NC_045512v2 11596 G11596T G T . . AC=4;AN=1125 +NC_045512v2 11620 C11620T C T . . AC=4;AN=1125 +NC_045512v2 11638 T11638C T C . . AC=2;AN=1125 +NC_045512v2 11654 T11654C T C . . AC=1;AN=1125 +NC_045512v2 11660 T11660A T A . . AC=1;AN=1125 +NC_045512v2 11670 G11670A G A . . AC=1;AN=1125 +NC_045512v2 11693 G11693T G T . . AC=1;AN=1125 +NC_045512v2 11698 T11698C T C . . AC=1;AN=1125 +NC_045512v2 11708 G11708A G A . . AC=1;AN=1125 +NC_045512v2 11714 A11714G A G . . AC=1;AN=1125 +NC_045512v2 11730 A11730G A G . . AC=1;AN=1125 +NC_045512v2 11740 A11740T A T . . AC=1;AN=1125 +NC_045512v2 11747 C11747T C T . . AC=5;AN=1125 +NC_045512v2 11750 C11750T C T . . AC=2;AN=1125 +NC_045512v2 11757 C11757T C T . . AC=1;AN=1125 +NC_045512v2 11758 C11758T C T . . AC=8;AN=1125 +NC_045512v2 11761 G11761T G T . . AC=5;AN=1125 +NC_045512v2 11764 T11764C T C . . AC=2;AN=1125 +NC_045512v2 11767 C11767T C T . . AC=1;AN=1125 +NC_045512v2 11781 A11781G A G . . AC=2;AN=1125 +NC_045512v2 11782 A11782G A G . . AC=6;AN=1125 +NC_045512v2 11783 C11783A C A . . AC=1;AN=1125 +NC_045512v2 11801 G11801A G A . . AC=2;AN=1125 +NC_045512v2 11824 C11824T C T . . AC=4;AN=1125 +NC_045512v2 11837 G11837T G T . . AC=1;AN=1125 +NC_045512v2 11839 A11839G A G . . AC=2;AN=1125 +NC_045512v2 11842 G11842A,G11842T G A,T . . AC=2,2;AN=1125 +NC_045512v2 11851 G11851T G T . . AC=2;AN=1125 +NC_045512v2 11857 T11857C T C . . AC=1;AN=1125 +NC_045512v2 11866 C11866T C T . . AC=2;AN=1125 +NC_045512v2 11869 A11869G A G . . AC=2;AN=1125 +NC_045512v2 11916 C11916T C T . . AC=38;AN=1125 +NC_045512v2 11919 C11919T C T . . AC=2;AN=1125 +NC_045512v2 11923 A11923G A G . . AC=1;AN=1125 +NC_045512v2 11926 G11926A G A . . AC=1;AN=1125 +NC_045512v2 11934 A11934T A T . . AC=1;AN=1125 +NC_045512v2 11941 C11941T C T . . AC=1;AN=1125 +NC_045512v2 11962 C11962T C T . . AC=1;AN=1125 +NC_045512v2 12025 C12025T C T . . AC=1;AN=1125 +NC_045512v2 12031 G12031A G A . . AC=1;AN=1125 +NC_045512v2 12043 C12043T C T . . AC=2;AN=1125 +NC_045512v2 12049 C12049T C T . . AC=1;AN=1125 +NC_045512v2 12053 C12053T C T . . AC=4;AN=1125 +NC_045512v2 12067 G12067T G T . . AC=2;AN=1125 +NC_045512v2 12073 C12073T C T . . AC=1;AN=1125 +NC_045512v2 12075 A12075G A G . . AC=2;AN=1125 +NC_045512v2 12076 C12076T C T . . AC=2;AN=1125 +NC_045512v2 12079 G12079C G C . . AC=1;AN=1125 +NC_045512v2 12085 C12085T C T . . AC=1;AN=1125 +NC_045512v2 12100 C12100T C T . . AC=2;AN=1125 +NC_045512v2 12115 C12115T C T . . AC=1;AN=1125 +NC_045512v2 12116 C12116T C T . . AC=2;AN=1125 +NC_045512v2 12130 A12130G A G . . AC=1;AN=1125 +NC_045512v2 12132 C12132T C T . . AC=1;AN=1125 +NC_045512v2 12134 T12134C T C . . AC=1;AN=1125 +NC_045512v2 12148 A12148G A G . . AC=1;AN=1125 +NC_045512v2 12160 G12160T G T . . AC=1;AN=1125 +NC_045512v2 12171 C12171T C T . . AC=2;AN=1125 +NC_045512v2 12174 A12174G A G . . AC=1;AN=1125 +NC_045512v2 12191 G12191T G T . . AC=6;AN=1125 +NC_045512v2 12194 C12194T C T . . AC=2;AN=1125 +NC_045512v2 12197 A12197C A C . . AC=1;AN=1125 +NC_045512v2 12202 G12202T G T . . AC=2;AN=1125 +NC_045512v2 12213 C12213T C T . . AC=1;AN=1125 +NC_045512v2 12225 C12225T C T . . AC=1;AN=1125 +NC_045512v2 12226 T12226C T C . . AC=2;AN=1125 +NC_045512v2 12242 C12242T C T . . AC=2;AN=1125 +NC_045512v2 12249 C12249T C T . . AC=3;AN=1125 +NC_045512v2 12294 C12294T C T . . AC=2;AN=1125 +NC_045512v2 12302 T12302C T C . . AC=1;AN=1125 +NC_045512v2 12311 G12311T G T . . AC=1;AN=1125 +NC_045512v2 12312 C12312T C T . . AC=2;AN=1125 +NC_045512v2 12357 C12357T C T . . AC=1;AN=1125 +NC_045512v2 12358 A12358T A T . . AC=1;AN=1125 +NC_045512v2 12374 C12374T C T . . AC=4;AN=1125 +NC_045512v2 12400 C12400T C T . . AC=3;AN=1125 +NC_045512v2 12406 C12406T C T . . AC=1;AN=1125 +NC_045512v2 12439 C12439T C T . . AC=1;AN=1125 +NC_045512v2 12459 C12459T C T . . AC=1;AN=1125 +NC_045512v2 12473 C12473T C T . . AC=2;AN=1125 +NC_045512v2 12488 C12488T C T . . AC=4;AN=1125 +NC_045512v2 12513 C12513T C T . . AC=6;AN=1125 +NC_045512v2 12514 G12514T G T . . AC=3;AN=1125 +NC_045512v2 12519 A12519G A G . . AC=4;AN=1125 +NC_045512v2 12525 C12525T C T . . AC=5;AN=1125 +NC_045512v2 12528 C12528A C A . . AC=1;AN=1125 +NC_045512v2 12529 A12529G A G . . AC=2;AN=1125 +NC_045512v2 12534 C12534T C T . . AC=1;AN=1125 +NC_045512v2 12547 A12547G A G . . AC=2;AN=1125 +NC_045512v2 12550 G12550A G A . . AC=2;AN=1125 +NC_045512v2 12556 A12556G A G . . AC=1;AN=1125 +NC_045512v2 12557 A12557C A C . . AC=2;AN=1125 +NC_045512v2 12559 C12559T C T . . AC=1;AN=1125 +NC_045512v2 12651 C12651T C T . . AC=3;AN=1125 +NC_045512v2 12655 T12655C T C . . AC=2;AN=1125 +NC_045512v2 12672 C12672T C T . . AC=1;AN=1125 +NC_045512v2 12694 G12694A G A . . AC=1;AN=1125 +NC_045512v2 12703 T12703C T C . . AC=1;AN=1125 +NC_045512v2 12710 C12710T C T . . AC=1;AN=1125 +NC_045512v2 12731 G12731A G A . . AC=1;AN=1125 +NC_045512v2 12733 C12733T C T . . AC=1;AN=1125 +NC_045512v2 12741 C12741T C T . . AC=2;AN=1125 +NC_045512v2 12747 C12747T C T . . AC=1;AN=1125 +NC_045512v2 12754 C12754T C T . . AC=2;AN=1125 +NC_045512v2 12759 A12759G A G . . AC=2;AN=1125 +NC_045512v2 12769 G12769A,G12769T G A,T . . AC=1,2;AN=1125 +NC_045512v2 12778 C12778T C T . . AC=2;AN=1125 +NC_045512v2 12781 C12781T C T . . AC=1;AN=1125 +NC_045512v2 12784 C12784T C T . . AC=1;AN=1125 +NC_045512v2 12786 C12786T C T . . AC=1;AN=1125 +NC_045512v2 12789 C12789T C T . . AC=3;AN=1125 +NC_045512v2 12809 C12809T C T . . AC=3;AN=1125 +NC_045512v2 12820 A12820G A G . . AC=3;AN=1125 +NC_045512v2 12832 G12832T G T . . AC=2;AN=1125 +NC_045512v2 12833 G12833A G A . . AC=1;AN=1125 +NC_045512v2 12845 G12845A G A . . AC=1;AN=1125 +NC_045512v2 12850 A12850G A G . . AC=2;AN=1125 +NC_045512v2 12854 C12854T C T . . AC=1;AN=1125 +NC_045512v2 12872 G12872A G A . . AC=1;AN=1125 +NC_045512v2 12878 A12878G A G . . AC=4;AN=1125 +NC_045512v2 12880 C12880T C T . . AC=3;AN=1125 +NC_045512v2 12892 G12892T G T . . AC=1;AN=1125 +NC_045512v2 12907 G12907A G A . . AC=1;AN=1125 +NC_045512v2 12911 G12911A G A . . AC=1;AN=1125 +NC_045512v2 12915 C12915T C T . . AC=3;AN=1125 +NC_045512v2 12916 A12916T A T . . AC=1;AN=1125 +NC_045512v2 12923 C12923T C T . . AC=2;AN=1125 +NC_045512v2 12925 T12925C T C . . AC=1;AN=1125 +NC_045512v2 12964 A12964G A G . . AC=1;AN=1125 +NC_045512v2 12988 G12988T G T . . AC=14;AN=1125 +NC_045512v2 13006 T13006C T C . . AC=2;AN=1125 +NC_045512v2 13009 C13009T C T . . AC=1;AN=1125 +NC_045512v2 13019 C13019T C T . . AC=2;AN=1125 +NC_045512v2 13051 C13051T C T . . AC=2;AN=1125 +NC_045512v2 13059 C13059T C T . . AC=2;AN=1125 +NC_045512v2 13105 C13105T C T . . AC=1;AN=1125 +NC_045512v2 13115 C13115T C T . . AC=1;AN=1125 +NC_045512v2 13122 G13122A G A . . AC=1;AN=1125 +NC_045512v2 13168 C13168T C T . . AC=2;AN=1125 +NC_045512v2 13176 C13176T C T . . AC=2;AN=1125 +NC_045512v2 13201 G13201T G T . . AC=1;AN=1125 +NC_045512v2 13247 C13247T C T . . AC=2;AN=1125 +NC_045512v2 13252 C13252T C T . . AC=2;AN=1125 +NC_045512v2 13261 C13261T C T . . AC=1;AN=1125 +NC_045512v2 13264 C13264T C T . . AC=1;AN=1125 +NC_045512v2 13270 T13270C T C . . AC=1;AN=1125 +NC_045512v2 13274 C13274T C T . . AC=2;AN=1125 +NC_045512v2 13276 A13276G A G . . AC=1;AN=1125 +NC_045512v2 13315 A13315G A G . . AC=1;AN=1125 +NC_045512v2 13329 C13329T C T . . AC=2;AN=1125 +NC_045512v2 13335 C13335T C T . . AC=5;AN=1125 +NC_045512v2 13345 T13345C T C . . AC=2;AN=1125 +NC_045512v2 13348 G13348T G T . . AC=1;AN=1125 +NC_045512v2 13378 C13378T C T . . AC=2;AN=1125 +NC_045512v2 13384 C13384T C T . . AC=1;AN=1125 +NC_045512v2 13397 G13397A,G13397T G A,T . . AC=1,1;AN=1125 +NC_045512v2 13417 T13417C T C . . AC=1;AN=1125 +NC_045512v2 13433 A13433G A G . . AC=1;AN=1125 +NC_045512v2 13440 A13440G A G . . AC=1;AN=1125 +NC_045512v2 13452 C13452T C T . . AC=1;AN=1125 +NC_045512v2 13458 C13458T C T . . AC=2;AN=1125 +NC_045512v2 13459 G13459T G T . . AC=2;AN=1125 +NC_045512v2 13487 C13487T C T . . AC=1;AN=1125 +NC_045512v2 13502 C13502T C T . . AC=1;AN=1125 +NC_045512v2 13512 A13512T A T . . AC=2;AN=1125 +NC_045512v2 13513 G13513A,G13513T G A,T . . AC=1,2;AN=1125 +NC_045512v2 13514 G13514A G A . . AC=2;AN=1125 +NC_045512v2 13516 A13516G A G . . AC=1;AN=1125 +NC_045512v2 13517 C13517T C T . . AC=2;AN=1125 +NC_045512v2 13536 C13536T C T . . AC=20;AN=1125 +NC_045512v2 13554 C13554T C T . . AC=1;AN=1125 +NC_045512v2 13568 C13568T C T . . AC=2;AN=1125 +NC_045512v2 13604 G13604C G C . . AC=1;AN=1125 +NC_045512v2 13605 C13605T C T . . AC=1;AN=1125 +NC_045512v2 13617 G13617T G T . . AC=2;AN=1125 +NC_045512v2 13620 C13620T C T . . AC=2;AN=1125 +NC_045512v2 13665 C13665T C T . . AC=2;AN=1125 +NC_045512v2 13667 C13667T C T . . AC=1;AN=1125 +NC_045512v2 13671 C13671T C T . . AC=3;AN=1125 +NC_045512v2 13707 A13707G A G . . AC=1;AN=1125 +NC_045512v2 13708 C13708A C A . . AC=1;AN=1125 +NC_045512v2 13712 A13712G A G . . AC=2;AN=1125 +NC_045512v2 13713 G13713A G A . . AC=2;AN=1125 +NC_045512v2 13724 C13724T C T . . AC=1;AN=1125 +NC_045512v2 13730 C13730T C T . . AC=4;AN=1125 +NC_045512v2 13761 C13761T C T . . AC=1;AN=1125 +NC_045512v2 13794 T13794G T G . . AC=2;AN=1125 +NC_045512v2 13821 C13821T C T . . AC=1;AN=1125 +NC_045512v2 13827 T13827C T C . . AC=2;AN=1125 +NC_045512v2 13833 A13833G A G . . AC=1;AN=1125 +NC_045512v2 13852 A13852G A G . . AC=1;AN=1125 +NC_045512v2 13858 G13858T G T . . AC=2;AN=1125 +NC_045512v2 13860 C13860T C T . . AC=3;AN=1125 +NC_045512v2 13862 C13862T C T . . AC=2;AN=1125 +NC_045512v2 13863 A13863G A G . . AC=1;AN=1125 +NC_045512v2 13876 C13876T C T . . AC=1;AN=1125 +NC_045512v2 13880 T13880C T C . . AC=1;AN=1125 +NC_045512v2 13883 C13883T C T . . AC=1;AN=1125 +NC_045512v2 13887 C13887T C T . . AC=4;AN=1125 +NC_045512v2 13897 G13897T G T . . AC=1;AN=1125 +NC_045512v2 13914 T13914C T C . . AC=2;AN=1125 +NC_045512v2 13923 C13923T C T . . AC=1;AN=1125 +NC_045512v2 13945 C13945T C T . . AC=1;AN=1125 +NC_045512v2 13968 C13968T C T . . AC=1;AN=1125 +NC_045512v2 13993 G13993T G T . . AC=5;AN=1125 +NC_045512v2 13994 C13994T C T . . AC=3;AN=1125 +NC_045512v2 14001 A14001G A G . . AC=1;AN=1125 +NC_045512v2 14012 A14012T A T . . AC=1;AN=1125 +NC_045512v2 14020 G14020T G T . . AC=1;AN=1125 +NC_045512v2 14055 G14055T G T . . AC=1;AN=1125 +NC_045512v2 14076 C14076T C T . . AC=1;AN=1125 +NC_045512v2 14097 C14097T C T . . AC=1;AN=1125 +NC_045512v2 14109 A14109G A G . . AC=1;AN=1125 +NC_045512v2 14120 C14120T C T . . AC=6;AN=1125 +NC_045512v2 14122 G14122T G T . . AC=2;AN=1125 +NC_045512v2 14127 T14127C T C . . AC=1;AN=1125 +NC_045512v2 14144 A14144G A G . . AC=1;AN=1125 +NC_045512v2 14177 C14177T C T . . AC=1;AN=1125 +NC_045512v2 14178 C14178T C T . . AC=1;AN=1125 +NC_045512v2 14183 C14183T C T . . AC=1;AN=1125 +NC_045512v2 14184 C14184T C T . . AC=1;AN=1125 +NC_045512v2 14186 G14186A G A . . AC=1;AN=1125 +NC_045512v2 14187 G14187A G A . . AC=1;AN=1125 +NC_045512v2 14189 C14189T C T . . AC=1;AN=1125 +NC_045512v2 14202 G14202T G T . . AC=2;AN=1125 +NC_045512v2 14220 C14220T C T . . AC=3;AN=1125 +NC_045512v2 14230 C14230A,C14230T C A,T . . AC=2,1;AN=1125 +NC_045512v2 14235 C14235T C T . . AC=1;AN=1125 +NC_045512v2 14238 T14238C T C . . AC=2;AN=1125 +NC_045512v2 14241 G14241T G T . . AC=2;AN=1125 +NC_045512v2 14245 G14245A G A . . AC=1;AN=1125 +NC_045512v2 14250 G14250T G T . . AC=1;AN=1125 +NC_045512v2 14265 C14265T C T . . AC=1;AN=1125 +NC_045512v2 14268 G14268A G A . . AC=1;AN=1125 +NC_045512v2 14294 G14294A G A . . AC=1;AN=1125 +NC_045512v2 14313 T14313C T C . . AC=2;AN=1125 +NC_045512v2 14318 C14318T C T . . AC=1;AN=1125 +NC_045512v2 14322 C14322T C T . . AC=2;AN=1125 +NC_045512v2 14328 A14328G A G . . AC=1;AN=1125 +NC_045512v2 14330 A14330G A G . . AC=1;AN=1125 +NC_045512v2 14340 C14340T C T . . AC=4;AN=1125 +NC_045512v2 14345 T14345C T C . . AC=2;AN=1125 +NC_045512v2 14352 C14352T C T . . AC=1;AN=1125 +NC_045512v2 14371 G14371A,G14371T G A,T . . AC=2,2;AN=1125 +NC_045512v2 14396 C14396T C T . . AC=1;AN=1125 +NC_045512v2 14407 C14407T C T . . AC=4;AN=1125 +NC_045512v2 14408 C14408T C T . . AC=1119;AN=1125 +NC_045512v2 14424 A14424G A G . . AC=1;AN=1125 +NC_045512v2 14425 C14425A C A . . AC=2;AN=1125 +NC_045512v2 14428 G14428T G T . . AC=1;AN=1125 +NC_045512v2 14490 G14490A G A . . AC=1;AN=1125 +NC_045512v2 14491 C14491T C T . . AC=1;AN=1125 +NC_045512v2 14499 T14499C T C . . AC=1;AN=1125 +NC_045512v2 14508 T14508C T C . . AC=1;AN=1125 +NC_045512v2 14528 G14528A G A . . AC=1;AN=1125 +NC_045512v2 14531 C14531T C T . . AC=1;AN=1125 +NC_045512v2 14547 G14547A G A . . AC=1;AN=1125 +NC_045512v2 14580 G14580A,G14580T G A,T . . AC=1,2;AN=1125 +NC_045512v2 14585 C14585T C T . . AC=1;AN=1125 +NC_045512v2 14599 C14599T C T . . AC=1;AN=1125 +NC_045512v2 14610 T14610C T C . . AC=1;AN=1125 +NC_045512v2 14643 T14643C T C . . AC=2;AN=1125 +NC_045512v2 14656 G14656T G T . . AC=1;AN=1125 +NC_045512v2 14676 C14676T C T . . AC=6;AN=1125 +NC_045512v2 14691 A14691G A G . . AC=1;AN=1125 +NC_045512v2 14697 C14697T C T . . AC=2;AN=1125 +NC_045512v2 14708 C14708T C T . . AC=2;AN=1125 +NC_045512v2 14721 T14721C T C . . AC=2;AN=1125 +NC_045512v2 14724 C14724T C T . . AC=9;AN=1125 +NC_045512v2 14741 C14741T C T . . AC=2;AN=1125 +NC_045512v2 14745 T14745G T G . . AC=1;AN=1125 +NC_045512v2 14757 C14757T C T . . AC=1;AN=1125 +NC_045512v2 14763 C14763T C T . . AC=1;AN=1125 +NC_045512v2 14769 T14769C T C . . AC=1;AN=1125 +NC_045512v2 14774 A14774G A G . . AC=2;AN=1125 +NC_045512v2 14785 G14785A G A . . AC=1;AN=1125 +NC_045512v2 14786 C14786T C T . . AC=5;AN=1125 +NC_045512v2 14805 C14805T C T . . AC=4;AN=1125 +NC_045512v2 14829 G14829T G T . . AC=1;AN=1125 +NC_045512v2 14857 G14857T G T . . AC=1;AN=1125 +NC_045512v2 14869 G14869A G A . . AC=1;AN=1125 +NC_045512v2 14874 G14874T G T . . AC=2;AN=1125 +NC_045512v2 14925 C14925T C T . . AC=1;AN=1125 +NC_045512v2 14928 C14928T C T . . AC=1;AN=1125 +NC_045512v2 14931 C14931T C T . . AC=4;AN=1125 +NC_045512v2 14937 C14937T C T . . AC=5;AN=1125 +NC_045512v2 15010 C15010T C T . . AC=1;AN=1125 +NC_045512v2 15026 C15026T C T . . AC=3;AN=1125 +NC_045512v2 15045 C15045T C T . . AC=1;AN=1125 +NC_045512v2 15081 C15081T C T . . AC=1;AN=1125 +NC_045512v2 15100 G15100T G T . . AC=1;AN=1125 +NC_045512v2 15120 C15120T C T . . AC=2;AN=1125 +NC_045512v2 15154 C15154T C T . . AC=1;AN=1125 +NC_045512v2 15156 T15156C T C . . AC=2;AN=1125 +NC_045512v2 15173 C15173T C T . . AC=1;AN=1125 +NC_045512v2 15187 A15187G A G . . AC=2;AN=1125 +NC_045512v2 15193 G15193A,G15193T G A,T . . AC=1,1;AN=1125 +NC_045512v2 15231 T15231C T C . . AC=1;AN=1125 +NC_045512v2 15237 C15237T C T . . AC=1;AN=1125 +NC_045512v2 15240 C15240T C T . . AC=5;AN=1125 +NC_045512v2 15250 A15250G A G . . AC=1;AN=1125 +NC_045512v2 15251 C15251A C A . . AC=1;AN=1125 +NC_045512v2 15253 G15253A G A . . AC=1;AN=1125 +NC_045512v2 15254 T15254C T C . . AC=1;AN=1125 +NC_045512v2 15260 G15260A,G15260T G A,T . . AC=1,1;AN=1125 +NC_045512v2 15264 T15264C T C . . AC=2;AN=1125 +NC_045512v2 15276 T15276A T A . . AC=1;AN=1125 +NC_045512v2 15277 C15277T C T . . AC=4;AN=1125 +NC_045512v2 15279 C15279T C T . . AC=4;AN=1125 +NC_045512v2 15283 A15283G A G . . AC=1;AN=1125 +NC_045512v2 15315 C15315T C T . . AC=1;AN=1125 +NC_045512v2 15324 C15324T C T . . AC=31;AN=1125 +NC_045512v2 15346 C15346A C A . . AC=1;AN=1125 +NC_045512v2 15352 C15352T C T . . AC=2;AN=1125 +NC_045512v2 15354 T15354C T C . . AC=2;AN=1125 +NC_045512v2 15366 T15366C T C . . AC=2;AN=1125 +NC_045512v2 15380 G15380T G T . . AC=1;AN=1125 +NC_045512v2 15402 A15402G A G . . AC=1;AN=1125 +NC_045512v2 15406 G15406T G T . . AC=1;AN=1125 +NC_045512v2 15437 T15437C T C . . AC=2;AN=1125 +NC_045512v2 15438 G15438T G T . . AC=8;AN=1125 +NC_045512v2 15451 G15451T G T . . AC=1;AN=1125 +NC_045512v2 15452 G15452T G T . . AC=2;AN=1125 +NC_045512v2 15477 A15477G,A15477T A G,T . . AC=1,2;AN=1125 +NC_045512v2 15480 C15480T C T . . AC=2;AN=1125 +NC_045512v2 15540 C15540T C T . . AC=1;AN=1125 +NC_045512v2 15543 G15543T G T . . AC=2;AN=1125 +NC_045512v2 15579 C15579T C T . . AC=2;AN=1125 +NC_045512v2 15585 T15585A T A . . AC=1;AN=1125 +NC_045512v2 15598 G15598A G A . . AC=14;AN=1125 +NC_045512v2 15613 C15613T C T . . AC=1;AN=1125 +NC_045512v2 15624 T15624C T C . . AC=2;AN=1125 +NC_045512v2 15652 G15652T G T . . AC=2;AN=1125 +NC_045512v2 15654 C15654T C T . . AC=1;AN=1125 +NC_045512v2 15656 C15656T C T . . AC=2;AN=1125 +NC_045512v2 15657 A15657G A G . . AC=1;AN=1125 +NC_045512v2 15705 G15705A G A . . AC=1;AN=1125 +NC_045512v2 15720 C15720T C T . . AC=5;AN=1125 +NC_045512v2 15732 G15732T G T . . AC=2;AN=1125 +NC_045512v2 15738 C15738T C T . . AC=1;AN=1125 +NC_045512v2 15752 C15752T C T . . AC=2;AN=1125 +NC_045512v2 15753 A15753G A G . . AC=1;AN=1125 +NC_045512v2 15763 C15763T C T . . AC=2;AN=1125 +NC_045512v2 15766 G15766T G T . . AC=6;AN=1125 +NC_045512v2 15773 G15773A G A . . AC=1;AN=1125 +NC_045512v2 15774 C15774T C T . . AC=1;AN=1125 +NC_045512v2 15801 T15801C T C . . AC=2;AN=1125 +NC_045512v2 15820 A15820G A G . . AC=1;AN=1125 +NC_045512v2 15824 C15824T C T . . AC=2;AN=1125 +NC_045512v2 15848 C15848T C T . . AC=3;AN=1125 +NC_045512v2 15906 G15906T G T . . AC=5;AN=1125 +NC_045512v2 15908 G15908A G A . . AC=1;AN=1125 +NC_045512v2 15933 C15933T C T . . AC=2;AN=1125 +NC_045512v2 15951 C15951T C T . . AC=1;AN=1125 +NC_045512v2 15952 C15952T C T . . AC=1;AN=1125 +NC_045512v2 15960 C15960T C T . . AC=5;AN=1125 +NC_045512v2 15972 A15972G A G . . AC=2;AN=1125 +NC_045512v2 15978 T15978C T C . . AC=2;AN=1125 +NC_045512v2 15982 G15982T G T . . AC=1;AN=1125 +NC_045512v2 15984 A15984T A T . . AC=2;AN=1125 +NC_045512v2 16014 G16014A G A . . AC=1;AN=1125 +NC_045512v2 16017 C16017T C T . . AC=2;AN=1125 +NC_045512v2 16044 A16044T A T . . AC=3;AN=1125 +NC_045512v2 16045 C16045T C T . . AC=1;AN=1125 +NC_045512v2 16049 C16049T C T . . AC=1;AN=1125 +NC_045512v2 16059 T16059C T C . . AC=1;AN=1125 +NC_045512v2 16062 T16062C T C . . AC=3;AN=1125 +NC_045512v2 16068 G16068T G T . . AC=1;AN=1125 +NC_045512v2 16072 G16072T G T . . AC=1;AN=1125 +NC_045512v2 16075 G16075T G T . . AC=1;AN=1125 +NC_045512v2 16077 T16077C T C . . AC=1;AN=1125 +NC_045512v2 16084 C16084T C T . . AC=1;AN=1125 +NC_045512v2 16085 A16085G A G . . AC=1;AN=1125 +NC_045512v2 16089 G16089A G A . . AC=1;AN=1125 +NC_045512v2 16101 C16101T C T . . AC=2;AN=1125 +NC_045512v2 16110 G16110A G A . . AC=1;AN=1125 +NC_045512v2 16111 C16111T C T . . AC=2;AN=1125 +NC_045512v2 16114 C16114T C T . . AC=1;AN=1125 +NC_045512v2 16117 G16117T G T . . AC=1;AN=1125 +NC_045512v2 16138 T16138C T C . . AC=1;AN=1125 +NC_045512v2 16148 A16148G A G . . AC=1;AN=1125 +NC_045512v2 16163 C16163T C T . . AC=1;AN=1125 +NC_045512v2 16169 A16169G A G . . AC=1;AN=1125 +NC_045512v2 16173 C16173T C T . . AC=1;AN=1125 +NC_045512v2 16176 T16176C T C . . AC=4;AN=1125 +NC_045512v2 16178 C16178T C T . . AC=2;AN=1125 +NC_045512v2 16179 A16179G A G . . AC=2;AN=1125 +NC_045512v2 16197 G16197T G T . . AC=1;AN=1125 +NC_045512v2 16213 T16213C T C . . AC=1;AN=1125 +NC_045512v2 16217 C16217T C T . . AC=1;AN=1125 +NC_045512v2 16230 C16230T C T . . AC=1;AN=1125 +NC_045512v2 16242 T16242A T A . . AC=2;AN=1125 +NC_045512v2 16260 C16260T C T . . AC=3;AN=1125 +NC_045512v2 16289 C16289T C T . . AC=2;AN=1125 +NC_045512v2 16293 C16293T C T . . AC=4;AN=1125 +NC_045512v2 16329 C16329T C T . . AC=4;AN=1125 +NC_045512v2 16332 C16332T C T . . AC=2;AN=1125 +NC_045512v2 16362 C16362T C T . . AC=2;AN=1125 +NC_045512v2 16376 C16376T C T . . AC=2;AN=1125 +NC_045512v2 16377 G16377T G T . . AC=1;AN=1125 +NC_045512v2 16393 C16393T C T . . AC=3;AN=1125 +NC_045512v2 16394 C16394T C T . . AC=8;AN=1125 +NC_045512v2 16425 T16425G T G . . AC=1;AN=1125 +NC_045512v2 16428 C16428T C T . . AC=3;AN=1125 +NC_045512v2 16456 T16456C,T16456G T C,G . . AC=4,1;AN=1125 +NC_045512v2 16457 C16457T C T . . AC=2;AN=1125 +NC_045512v2 16466 C16466T C T . . AC=1;AN=1125 +NC_045512v2 16469 C16469T C T . . AC=1;AN=1125 +NC_045512v2 16479 T16479C T C . . AC=2;AN=1125 +NC_045512v2 16521 T16521C T C . . AC=1;AN=1125 +NC_045512v2 16541 A16541G A G . . AC=1;AN=1125 +NC_045512v2 16568 C16568A C A . . AC=1;AN=1125 +NC_045512v2 16575 C16575T C T . . AC=1;AN=1125 +NC_045512v2 16616 C16616T C T . . AC=2;AN=1125 +NC_045512v2 16626 C16626T C T . . AC=1;AN=1125 +NC_045512v2 16632 T16632C T C . . AC=1;AN=1125 +NC_045512v2 16638 A16638G A G . . AC=1;AN=1125 +NC_045512v2 16647 G16647T G T . . AC=8;AN=1125 +NC_045512v2 16650 C16650T C T . . AC=2;AN=1125 +NC_045512v2 16653 A16653G A G . . AC=1;AN=1125 +NC_045512v2 16694 C16694A C A . . AC=2;AN=1125 +NC_045512v2 16695 T16695G T G . . AC=1;AN=1125 +NC_045512v2 16733 C16733T C T . . AC=1;AN=1125 +NC_045512v2 16741 G16741A,G16741T G A,T . . AC=2,2;AN=1125 +NC_045512v2 16743 T16743C T C . . AC=1;AN=1125 +NC_045512v2 16752 T16752G T G . . AC=1;AN=1125 +NC_045512v2 16762 C16762T C T . . AC=6;AN=1125 +NC_045512v2 16766 A16766G A G . . AC=1;AN=1125 +NC_045512v2 16813 G16813A G A . . AC=6;AN=1125 +NC_045512v2 16840 A16840C A C . . AC=1;AN=1125 +NC_045512v2 16846 G16846T G T . . AC=2;AN=1125 +NC_045512v2 16852 G16852T G T . . AC=3;AN=1125 +NC_045512v2 16853 G16853T G T . . AC=1;AN=1125 +NC_045512v2 16855 G16855T G T . . AC=1;AN=1125 +NC_045512v2 16861 G16861T G T . . AC=1;AN=1125 +NC_045512v2 16872 A16872C A C . . AC=1;AN=1125 +NC_045512v2 16889 A16889G A G . . AC=6;AN=1125 +NC_045512v2 16912 G16912T G T . . AC=4;AN=1125 +NC_045512v2 16915 C16915T C T . . AC=4;AN=1125 +NC_045512v2 16917 G16917T G T . . AC=1;AN=1125 +NC_045512v2 16920 A16920G A G . . AC=1;AN=1125 +NC_045512v2 16928 C16928T C T . . AC=1;AN=1125 +NC_045512v2 16935 G16935T G T . . AC=1;AN=1125 +NC_045512v2 16946 C16946T C T . . AC=1;AN=1125 +NC_045512v2 16968 G16968T G T . . AC=2;AN=1125 +NC_045512v2 16993 T16993C T C . . AC=2;AN=1125 +NC_045512v2 16997 C16997T C T . . AC=2;AN=1125 +NC_045512v2 17000 C17000T C T . . AC=1;AN=1125 +NC_045512v2 17004 C17004T C T . . AC=1;AN=1125 +NC_045512v2 17014 G17014T G T . . AC=4;AN=1125 +NC_045512v2 17019 G17019T G T . . AC=6;AN=1125 +NC_045512v2 17027 G17027T G T . . AC=1;AN=1125 +NC_045512v2 17032 G17032A G A . . AC=1;AN=1125 +NC_045512v2 17040 T17040C T C . . AC=1;AN=1125 +NC_045512v2 17058 G17058T G T . . AC=3;AN=1125 +NC_045512v2 17069 C17069T C T . . AC=2;AN=1125 +NC_045512v2 17104 C17104T C T . . AC=29;AN=1125 +NC_045512v2 17118 C17118T C T . . AC=2;AN=1125 +NC_045512v2 17119 C17119T C T . . AC=1;AN=1125 +NC_045512v2 17125 C17125T C T . . AC=5;AN=1125 +NC_045512v2 17126 T17126C T C . . AC=2;AN=1125 +NC_045512v2 17142 T17142A T A . . AC=2;AN=1125 +NC_045512v2 17145 C17145T C T . . AC=2;AN=1125 +NC_045512v2 17156 C17156T C T . . AC=1;AN=1125 +NC_045512v2 17163 C17163T C T . . AC=1;AN=1125 +NC_045512v2 17172 C17172T C T . . AC=1;AN=1125 +NC_045512v2 17208 T17208C T C . . AC=2;AN=1125 +NC_045512v2 17214 T17214C T C . . AC=1;AN=1125 +NC_045512v2 17249 C17249T C T . . AC=2;AN=1125 +NC_045512v2 17259 G17259T G T . . AC=7;AN=1125 +NC_045512v2 17261 G17261A G A . . AC=1;AN=1125 +NC_045512v2 17262 T17262C T C . . AC=1;AN=1125 +NC_045512v2 17278 G17278T G T . . AC=6;AN=1125 +NC_045512v2 17280 G17280T G T . . AC=2;AN=1125 +NC_045512v2 17302 G17302T G T . . AC=2;AN=1125 +NC_045512v2 17304 C17304T C T . . AC=2;AN=1125 +NC_045512v2 17313 T17313C T C . . AC=1;AN=1125 +NC_045512v2 17334 G17334T G T . . AC=3;AN=1125 +NC_045512v2 17336 C17336T C T . . AC=1;AN=1125 +NC_045512v2 17338 G17338T G T . . AC=1;AN=1125 +NC_045512v2 17410 C17410T C T . . AC=2;AN=1125 +NC_045512v2 17427 G17427T G T . . AC=2;AN=1125 +NC_045512v2 17429 A17429G A G . . AC=1;AN=1125 +NC_045512v2 17436 C17436T C T . . AC=1;AN=1125 +NC_045512v2 17502 C17502T C T . . AC=1;AN=1125 +NC_045512v2 17518 C17518A,C17518T C A,T . . AC=1,2;AN=1125 +NC_045512v2 17521 A17521G A G . . AC=2;AN=1125 +NC_045512v2 17550 C17550T C T . . AC=5;AN=1125 +NC_045512v2 17551 G17551A G A . . AC=4;AN=1125 +NC_045512v2 17568 T17568C T C . . AC=1;AN=1125 +NC_045512v2 17572 G17572T G T . . AC=1;AN=1125 +NC_045512v2 17590 G17590T G T . . AC=1;AN=1125 +NC_045512v2 17607 T17607C T C . . AC=1;AN=1125 +NC_045512v2 17612 A17612G A G . . AC=1;AN=1125 +NC_045512v2 17615 A17615G A G . . AC=2;AN=1125 +NC_045512v2 17632 G17632A G A . . AC=1;AN=1125 +NC_045512v2 17637 A17637G A G . . AC=4;AN=1125 +NC_045512v2 17639 C17639T C T . . AC=5;AN=1125 +NC_045512v2 17676 C17676T C T . . AC=3;AN=1125 +NC_045512v2 17678 C17678T C T . . AC=3;AN=1125 +NC_045512v2 17688 T17688C T C . . AC=2;AN=1125 +NC_045512v2 17690 C17690T C T . . AC=9;AN=1125 +NC_045512v2 17691 A17691G A G . . AC=1;AN=1125 +NC_045512v2 17721 G17721T G T . . AC=4;AN=1125 +NC_045512v2 17722 G17722T G T . . AC=2;AN=1125 +NC_045512v2 17730 A17730G A G . . AC=1;AN=1125 +NC_045512v2 17733 C17733T C T . . AC=1;AN=1125 +NC_045512v2 17746 C17746T C T . . AC=4;AN=1125 +NC_045512v2 17750 C17750T C T . . AC=1;AN=1125 +NC_045512v2 17759 A17759G A G . . AC=1;AN=1125 +NC_045512v2 17762 C17762T C T . . AC=1;AN=1125 +NC_045512v2 17766 C17766T C T . . AC=1;AN=1125 +NC_045512v2 17772 T17772C T C . . AC=1;AN=1125 +NC_045512v2 17790 G17790T G T . . AC=1;AN=1125 +NC_045512v2 17795 C17795T C T . . AC=1;AN=1125 +NC_045512v2 17799 A17799G A G . . AC=1;AN=1125 +NC_045512v2 17802 C17802T C T . . AC=2;AN=1125 +NC_045512v2 17808 G17808T G T . . AC=2;AN=1125 +NC_045512v2 17835 T17835C T C . . AC=2;AN=1125 +NC_045512v2 17838 T17838C T C . . AC=2;AN=1125 +NC_045512v2 17893 G17893T G T . . AC=1;AN=1125 +NC_045512v2 17944 G17944T G T . . AC=5;AN=1125 +NC_045512v2 17964 G17964T G T . . AC=2;AN=1125 +NC_045512v2 17977 C17977T C T . . AC=1;AN=1125 +NC_045512v2 17999 C17999T C T . . AC=1;AN=1125 +NC_045512v2 18028 G18028T G T . . AC=15;AN=1125 +NC_045512v2 18029 C18029T C T . . AC=4;AN=1125 +NC_045512v2 18032 C18032T C T . . AC=5;AN=1125 +NC_045512v2 18060 C18060T C T . . AC=1;AN=1125 +NC_045512v2 18086 C18086T C T . . AC=2;AN=1125 +NC_045512v2 18105 G18105T G T . . AC=2;AN=1125 +NC_045512v2 18110 C18110T C T . . AC=1;AN=1125 +NC_045512v2 18115 C18115T C T . . AC=2;AN=1125 +NC_045512v2 18120 C18120T C T . . AC=2;AN=1125 +NC_045512v2 18129 C18129T C T . . AC=2;AN=1125 +NC_045512v2 18131 C18131T C T . . AC=1;AN=1125 +NC_045512v2 18144 T18144C T C . . AC=3;AN=1125 +NC_045512v2 18148 G18148A G A . . AC=1;AN=1125 +NC_045512v2 18167 C18167T C T . . AC=2;AN=1125 +NC_045512v2 18171 C18171T C T . . AC=2;AN=1125 +NC_045512v2 18174 A18174G A G . . AC=1;AN=1125 +NC_045512v2 18176 C18176T C T . . AC=2;AN=1125 +NC_045512v2 18183 C18183T C T . . AC=2;AN=1125 +NC_045512v2 18186 G18186T G T . . AC=2;AN=1125 +NC_045512v2 18210 G18210T G T . . AC=1;AN=1125 +NC_045512v2 18213 G18213T G T . . AC=2;AN=1125 +NC_045512v2 18231 T18231C T C . . AC=2;AN=1125 +NC_045512v2 18240 T18240C T C . . AC=1;AN=1125 +NC_045512v2 18252 C18252T C T . . AC=1;AN=1125 +NC_045512v2 18255 G18255T G T . . AC=1;AN=1125 +NC_045512v2 18267 C18267T C T . . AC=3;AN=1125 +NC_045512v2 18270 A18270C A C . . AC=2;AN=1125 +NC_045512v2 18281 G18281A G A . . AC=2;AN=1125 +NC_045512v2 18292 G18292T G T . . AC=5;AN=1125 +NC_045512v2 18309 T18309C T C . . AC=1;AN=1125 +NC_045512v2 18315 G18315A G A . . AC=1;AN=1125 +NC_045512v2 18318 G18318T G T . . AC=1;AN=1125 +NC_045512v2 18322 C18322T C T . . AC=1;AN=1125 +NC_045512v2 18329 C18329T C T . . AC=2;AN=1125 +NC_045512v2 18337 G18337T G T . . AC=1;AN=1125 +NC_045512v2 18366 A18366G A G . . AC=1;AN=1125 +NC_045512v2 18377 C18377T C T . . AC=1;AN=1125 +NC_045512v2 18380 G18380T G T . . AC=1;AN=1125 +NC_045512v2 18395 C18395T C T . . AC=3;AN=1125 +NC_045512v2 18402 T18402C T C . . AC=1;AN=1125 +NC_045512v2 18412 G18412T G T . . AC=1;AN=1125 +NC_045512v2 18424 A18424G A G . . AC=3;AN=1125 +NC_045512v2 18452 C18452T C T . . AC=2;AN=1125 +NC_045512v2 18453 T18453C T C . . AC=1;AN=1125 +NC_045512v2 18462 G18462T G T . . AC=1;AN=1125 +NC_045512v2 18463 C18463T C T . . AC=1;AN=1125 +NC_045512v2 18468 A18468C A C . . AC=1;AN=1125 +NC_045512v2 18481 C18481T C T . . AC=1;AN=1125 +NC_045512v2 18483 C18483T C T . . AC=1;AN=1125 +NC_045512v2 18486 C18486T C T . . AC=2;AN=1125 +NC_045512v2 18488 T18488C T C . . AC=2;AN=1125 +NC_045512v2 18500 A18500G A G . . AC=1;AN=1125 +NC_045512v2 18501 C18501T C T . . AC=1;AN=1125 +NC_045512v2 18508 C18508T C T . . AC=2;AN=1125 +NC_045512v2 18513 T18513A T A . . AC=1;AN=1125 +NC_045512v2 18520 G18520A G A . . AC=1;AN=1125 +NC_045512v2 18529 A18529G A G . . AC=1;AN=1125 +NC_045512v2 18538 G18538T G T . . AC=1;AN=1125 +NC_045512v2 18546 G18546T G T . . AC=1;AN=1125 +NC_045512v2 18552 T18552C T C . . AC=1;AN=1125 +NC_045512v2 18555 C18555T C T . . AC=12;AN=1125 +NC_045512v2 18568 C18568T C T . . AC=5;AN=1125 +NC_045512v2 18570 C18570T C T . . AC=1;AN=1125 +NC_045512v2 18583 G18583A,G18583T G A,T . . AC=2,2;AN=1125 +NC_045512v2 18591 C18591T C T . . AC=1;AN=1125 +NC_045512v2 18594 A18594G A G . . AC=1;AN=1125 +NC_045512v2 18606 C18606T C T . . AC=1;AN=1125 +NC_045512v2 18616 A18616G A G . . AC=1;AN=1125 +NC_045512v2 18641 T18641C T C . . AC=1;AN=1125 +NC_045512v2 18647 C18647T C T . . AC=2;AN=1125 +NC_045512v2 18651 G18651T G T . . AC=1;AN=1125 +NC_045512v2 18652 C18652T C T . . AC=1;AN=1125 +NC_045512v2 18654 C18654T C T . . AC=1;AN=1125 +NC_045512v2 18662 G18662C G C . . AC=2;AN=1125 +NC_045512v2 18670 G18670A G A . . AC=1;AN=1125 +NC_045512v2 18671 A18671C A C . . AC=1;AN=1125 +NC_045512v2 18674 G18674A G A . . AC=2;AN=1125 +NC_045512v2 18676 C18676T C T . . AC=1;AN=1125 +NC_045512v2 18687 C18687T C T . . AC=5;AN=1125 +NC_045512v2 18693 C18693A C A . . AC=1;AN=1125 +NC_045512v2 18695 C18695T C T . . AC=1;AN=1125 +NC_045512v2 18713 C18713T C T . . AC=3;AN=1125 +NC_045512v2 18723 T18723C T C . . AC=2;AN=1125 +NC_045512v2 18744 C18744T C T . . AC=6;AN=1125 +NC_045512v2 18747 C18747T C T . . AC=4;AN=1125 +NC_045512v2 18756 G18756T G T . . AC=2;AN=1125 +NC_045512v2 18788 C18788T C T . . AC=2;AN=1125 +NC_045512v2 18803 G18803T G T . . AC=5;AN=1125 +NC_045512v2 18807 C18807T C T . . AC=1;AN=1125 +NC_045512v2 18816 G18816T G T . . AC=1;AN=1125 +NC_045512v2 18818 A18818G A G . . AC=2;AN=1125 +NC_045512v2 18840 A18840G A G . . AC=2;AN=1125 +NC_045512v2 18846 A18846G A G . . AC=1;AN=1125 +NC_045512v2 18859 G18859T G T . . AC=2;AN=1125 +NC_045512v2 18877 C18877T C T . . AC=100;AN=1125 +NC_045512v2 18880 G18880T G T . . AC=1;AN=1125 +NC_045512v2 18898 G18898T G T . . AC=2;AN=1125 +NC_045512v2 18902 A18902C A C . . AC=1;AN=1125 +NC_045512v2 18904 C18904T C T . . AC=2;AN=1125 +NC_045512v2 18907 G18907T G T . . AC=3;AN=1125 +NC_045512v2 18928 C18928T C T . . AC=1;AN=1125 +NC_045512v2 18960 G18960T G T . . AC=1;AN=1125 +NC_045512v2 18972 G18972A G A . . AC=2;AN=1125 +NC_045512v2 18974 T18974G T G . . AC=1;AN=1125 +NC_045512v2 18978 A18978G A G . . AC=2;AN=1125 +NC_045512v2 18981 C18981T C T . . AC=4;AN=1125 +NC_045512v2 18984 G18984T G T . . AC=2;AN=1125 +NC_045512v2 18985 G18985T G T . . AC=1;AN=1125 +NC_045512v2 18989 T18989C T C . . AC=2;AN=1125 +NC_045512v2 18998 C18998T C T . . AC=18;AN=1125 +NC_045512v2 19009 G19009T G T . . AC=1;AN=1125 +NC_045512v2 19011 C19011T C T . . AC=1;AN=1125 +NC_045512v2 19029 C19029T C T . . AC=1;AN=1125 +NC_045512v2 19032 C19032T C T . . AC=1;AN=1125 +NC_045512v2 19041 C19041T C T . . AC=1;AN=1125 +NC_045512v2 19056 G19056T G T . . AC=1;AN=1125 +NC_045512v2 19066 C19066A C A . . AC=2;AN=1125 +NC_045512v2 19072 G19072T G T . . AC=1;AN=1125 +NC_045512v2 19080 A19080G A G . . AC=1;AN=1125 +NC_045512v2 19086 G19086T G T . . AC=5;AN=1125 +NC_045512v2 19089 C19089T C T . . AC=3;AN=1125 +NC_045512v2 19098 A19098G A G . . AC=1;AN=1125 +NC_045512v2 19113 C19113A,C19113T C A,T . . AC=1,1;AN=1125 +NC_045512v2 19116 A19116G A G . . AC=1;AN=1125 +NC_045512v2 19117 G19117T G T . . AC=1;AN=1125 +NC_045512v2 19137 A19137T A T . . AC=1;AN=1125 +NC_045512v2 19143 T19143C T C . . AC=2;AN=1125 +NC_045512v2 19145 C19145T C T . . AC=3;AN=1125 +NC_045512v2 19151 C19151T C T . . AC=1;AN=1125 +NC_045512v2 19160 C19160T C T . . AC=1;AN=1125 +NC_045512v2 19164 C19164T C T . . AC=5;AN=1125 +NC_045512v2 19167 A19167G A G . . AC=4;AN=1125 +NC_045512v2 19170 C19170T C T . . AC=7;AN=1125 +NC_045512v2 19174 G19174T G T . . AC=1;AN=1125 +NC_045512v2 19180 G19180T G T . . AC=1;AN=1125 +NC_045512v2 19185 C19185T C T . . AC=5;AN=1125 +NC_045512v2 19186 C19186T C T . . AC=2;AN=1125 +NC_045512v2 19232 T19232C T C . . AC=1;AN=1125 +NC_045512v2 19254 G19254T G T . . AC=1;AN=1125 +NC_045512v2 19264 C19264T C T . . AC=1;AN=1125 +NC_045512v2 19269 C19269T C T . . AC=3;AN=1125 +NC_045512v2 19273 C19273T C T . . AC=2;AN=1125 +NC_045512v2 19274 C19274A C A . . AC=4;AN=1125 +NC_045512v2 19324 C19324A C A . . AC=1;AN=1125 +NC_045512v2 19341 T19341C T C . . AC=1;AN=1125 +NC_045512v2 19366 C19366T C T . . AC=6;AN=1125 +NC_045512v2 19367 C19367T C T . . AC=1;AN=1125 +NC_045512v2 19374 C19374T C T . . AC=1;AN=1125 +NC_045512v2 19386 C19386T C T . . AC=1;AN=1125 +NC_045512v2 19387 A19387G A G . . AC=1;AN=1125 +NC_045512v2 19398 G19398A,G19398T G A,T . . AC=1,2;AN=1125 +NC_045512v2 19454 C19454T C T . . AC=1;AN=1125 +NC_045512v2 19473 T19473C T C . . AC=1;AN=1125 +NC_045512v2 19476 A19476G A G . . AC=1;AN=1125 +NC_045512v2 19480 G19480A,G19480T G A,T . . AC=2,1;AN=1125 +NC_045512v2 19488 C19488T C T . . AC=5;AN=1125 +NC_045512v2 19509 G19509A G A . . AC=4;AN=1125 +NC_045512v2 19524 C19524T C T . . AC=4;AN=1125 +NC_045512v2 19527 T19527C T C . . AC=1;AN=1125 +NC_045512v2 19538 T19538C T C . . AC=1;AN=1125 +NC_045512v2 19540 A19540G A G . . AC=1;AN=1125 +NC_045512v2 19542 G19542T G T . . AC=8;AN=1125 +NC_045512v2 19545 C19545T C T . . AC=1;AN=1125 +NC_045512v2 19549 G19549T G T . . AC=2;AN=1125 +NC_045512v2 19572 C19572T C T . . AC=1;AN=1125 +NC_045512v2 19602 C19602T C T . . AC=2;AN=1125 +NC_045512v2 19610 C19610T C T . . AC=2;AN=1125 +NC_045512v2 19635 G19635T G T . . AC=1;AN=1125 +NC_045512v2 19648 G19648T G T . . AC=1;AN=1125 +NC_045512v2 19650 A19650G A G . . AC=2;AN=1125 +NC_045512v2 19655 A19655G A G . . AC=1;AN=1125 +NC_045512v2 19656 G19656A G A . . AC=2;AN=1125 +NC_045512v2 19670 G19670A G A . . AC=2;AN=1125 +NC_045512v2 19674 A19674G A G . . AC=2;AN=1125 +NC_045512v2 19684 G19684A G A . . AC=1;AN=1125 +NC_045512v2 19698 C19698T C T . . AC=1;AN=1125 +NC_045512v2 19718 C19718T C T . . AC=5;AN=1125 +NC_045512v2 19735 G19735T G T . . AC=3;AN=1125 +NC_045512v2 19743 A19743C A C . . AC=1;AN=1125 +NC_045512v2 19763 C19763T C T . . AC=2;AN=1125 +NC_045512v2 19806 C19806T C T . . AC=1;AN=1125 +NC_045512v2 19815 A19815G A G . . AC=1;AN=1125 +NC_045512v2 19816 G19816A,G19816T G A,T . . AC=1,4;AN=1125 +NC_045512v2 19821 A19821G A G . . AC=1;AN=1125 +NC_045512v2 19839 T19839C T C . . AC=35;AN=1125 +NC_045512v2 19846 G19846A G A . . AC=1;AN=1125 +NC_045512v2 19855 A19855G A G . . AC=1;AN=1125 +NC_045512v2 19862 C19862T C T . . AC=6;AN=1125 +NC_045512v2 19872 G19872C G C . . AC=1;AN=1125 +NC_045512v2 19879 G19879A G A . . AC=1;AN=1125 +NC_045512v2 19884 C19884T C T . . AC=2;AN=1125 +NC_045512v2 19889 G19889T G T . . AC=1;AN=1125 +NC_045512v2 19891 G19891T G T . . AC=2;AN=1125 +NC_045512v2 19893 T19893C T C . . AC=2;AN=1125 +NC_045512v2 19899 A19899T A T . . AC=2;AN=1125 +NC_045512v2 19935 T19935C T C . . AC=1;AN=1125 +NC_045512v2 19955 C19955T C T . . AC=2;AN=1125 +NC_045512v2 19961 C19961T C T . . AC=1;AN=1125 +NC_045512v2 19962 G19962C,G19962T G C,T . . AC=1,4;AN=1125 +NC_045512v2 19963 A19963G A G . . AC=1;AN=1125 +NC_045512v2 19969 G19969A G A . . AC=4;AN=1125 +NC_045512v2 19975 C19975A C A . . AC=1;AN=1125 +NC_045512v2 19983 C19983T C T . . AC=3;AN=1125 +NC_045512v2 19999 G19999T G T . . AC=1;AN=1125 +NC_045512v2 20006 G20006T G T . . AC=1;AN=1125 +NC_045512v2 20037 T20037C T C . . AC=2;AN=1125 +NC_045512v2 20049 T20049C T C . . AC=2;AN=1125 +NC_045512v2 20055 A20055G A G . . AC=1;AN=1125 +NC_045512v2 20060 G20060T G T . . AC=1;AN=1125 +NC_045512v2 20062 G20062T G T . . AC=2;AN=1125 +NC_045512v2 20089 C20089T C T . . AC=1;AN=1125 +NC_045512v2 20092 A20092G A G . . AC=1;AN=1125 +NC_045512v2 20125 G20125A G A . . AC=1;AN=1125 +NC_045512v2 20134 G20134T G T . . AC=1;AN=1125 +NC_045512v2 20136 A20136G A G . . AC=1;AN=1125 +NC_045512v2 20148 C20148T C T . . AC=1;AN=1125 +NC_045512v2 20160 G20160T G T . . AC=1;AN=1125 +NC_045512v2 20164 G20164A G A . . AC=1;AN=1125 +NC_045512v2 20178 C20178T C T . . AC=1;AN=1125 +NC_045512v2 20196 T20196C T C . . AC=1;AN=1125 +NC_045512v2 20199 C20199T C T . . AC=2;AN=1125 +NC_045512v2 20233 C20233T C T . . AC=7;AN=1125 +NC_045512v2 20238 G20238T G T . . AC=1;AN=1125 +NC_045512v2 20247 G20247T G T . . AC=1;AN=1125 +NC_045512v2 20259 C20259T C T . . AC=1;AN=1125 +NC_045512v2 20262 A20262G A G . . AC=1;AN=1125 +NC_045512v2 20268 A20268G A G . . AC=106;AN=1125 +NC_045512v2 20275 G20275A,G20275T G A,T . . AC=2,1;AN=1125 +NC_045512v2 20283 C20283T C T . . AC=2;AN=1125 +NC_045512v2 20284 A20284G,A20284T A G,T . . AC=1,2;AN=1125 +NC_045512v2 20285 T20285C,T20285G T C,G . . AC=2,1;AN=1125 +NC_045512v2 20288 A20288G A G . . AC=2;AN=1125 +NC_045512v2 20320 C20320T C T . . AC=2;AN=1125 +NC_045512v2 20325 C20325T C T . . AC=1;AN=1125 +NC_045512v2 20355 A20355G A G . . AC=2;AN=1125 +NC_045512v2 20362 T20362C T C . . AC=1;AN=1125 +NC_045512v2 20368 C20368T C T . . AC=2;AN=1125 +NC_045512v2 20384 C20384T C T . . AC=1;AN=1125 +NC_045512v2 20396 A20396G A G . . AC=1;AN=1125 +NC_045512v2 20401 T20401C T C . . AC=1;AN=1125 +NC_045512v2 20405 C20405T C T . . AC=1;AN=1125 +NC_045512v2 20429 C20429T C T . . AC=1;AN=1125 +NC_045512v2 20451 C20451T C T . . AC=5;AN=1125 +NC_045512v2 20468 C20468T C T . . AC=1;AN=1125 +NC_045512v2 20474 C20474T C T . . AC=3;AN=1125 +NC_045512v2 20476 G20476T G T . . AC=1;AN=1125 +NC_045512v2 20491 G20491A G A . . AC=1;AN=1125 +NC_045512v2 20503 A20503G A G . . AC=1;AN=1125 +NC_045512v2 20544 C20544A C A . . AC=1;AN=1125 +NC_045512v2 20553 A20553G A G . . AC=2;AN=1125 +NC_045512v2 20555 C20555T C T . . AC=4;AN=1125 +NC_045512v2 20559 A20559G A G . . AC=2;AN=1125 +NC_045512v2 20568 G20568A G A . . AC=1;AN=1125 +NC_045512v2 20569 G20569T G T . . AC=1;AN=1125 +NC_045512v2 20578 G20578A,G20578T G A,T . . AC=1,3;AN=1125 +NC_045512v2 20580 G20580T G T . . AC=1;AN=1125 +NC_045512v2 20613 T20613C T C . . AC=1;AN=1125 +NC_045512v2 20622 A20622T A T . . AC=2;AN=1125 +NC_045512v2 20623 G20623T G T . . AC=2;AN=1125 +NC_045512v2 20624 A20624T A T . . AC=2;AN=1125 +NC_045512v2 20649 A20649T A T . . AC=1;AN=1125 +NC_045512v2 20667 A20667G A G . . AC=1;AN=1125 +NC_045512v2 20670 G20670A G A . . AC=1;AN=1125 +NC_045512v2 20675 A20675T A T . . AC=2;AN=1125 +NC_045512v2 20679 G20679A,G20679T G A,T . . AC=3,3;AN=1125 +NC_045512v2 20703 C20703T C T . . AC=1;AN=1125 +NC_045512v2 20709 G20709T G T . . AC=2;AN=1125 +NC_045512v2 20716 A20716G A G . . AC=1;AN=1125 +NC_045512v2 20724 A20724G A G . . AC=2;AN=1125 +NC_045512v2 20736 C20736T C T . . AC=1;AN=1125 +NC_045512v2 20740 C20740A C A . . AC=2;AN=1125 +NC_045512v2 20742 A20742C,A20742G,A20742T A C,G,T . . AC=4,1,1;AN=1125 +NC_045512v2 20752 G20752T G T . . AC=1;AN=1125 +NC_045512v2 20755 A20755C A C . . AC=2;AN=1125 +NC_045512v2 20759 C20759T C T . . AC=1;AN=1125 +NC_045512v2 20762 C20762T C T . . AC=4;AN=1125 +NC_045512v2 20764 T20764C T C . . AC=1;AN=1125 +NC_045512v2 20799 T20799C T C . . AC=5;AN=1125 +NC_045512v2 20823 C20823T C T . . AC=1;AN=1125 +NC_045512v2 20826 A20826G A G . . AC=1;AN=1125 +NC_045512v2 20829 A20829G A G . . AC=1;AN=1125 +NC_045512v2 20838 T20838C T C . . AC=1;AN=1125 +NC_045512v2 20844 C20844T C T . . AC=2;AN=1125 +NC_045512v2 20860 A20860G A G . . AC=1;AN=1125 +NC_045512v2 20890 G20890A G A . . AC=1;AN=1125 +NC_045512v2 20916 A20916G A G . . AC=2;AN=1125 +NC_045512v2 20931 G20931A G A . . AC=2;AN=1125 +NC_045512v2 20936 C20936T C T . . AC=1;AN=1125 +NC_045512v2 20940 G20940T G T . . AC=1;AN=1125 +NC_045512v2 20941 C20941T C T . . AC=1;AN=1125 +NC_045512v2 20946 C20946T C T . . AC=4;AN=1125 +NC_045512v2 20970 C20970T C T . . AC=1;AN=1125 +NC_045512v2 20976 T20976C T C . . AC=1;AN=1125 +NC_045512v2 20977 G20977T G T . . AC=1;AN=1125 +NC_045512v2 20980 G20980A G A . . AC=2;AN=1125 +NC_045512v2 20982 T20982C T C . . AC=1;AN=1125 +NC_045512v2 20989 T20989C T C . . AC=1;AN=1125 +NC_045512v2 21000 T21000C T C . . AC=1;AN=1125 +NC_045512v2 21005 C21005T C T . . AC=1;AN=1125 +NC_045512v2 21017 C21017T C T . . AC=1;AN=1125 +NC_045512v2 21018 A21018G A G . . AC=1;AN=1125 +NC_045512v2 21033 T21033C T C . . AC=1;AN=1125 +NC_045512v2 21034 C21034T C T . . AC=1;AN=1125 +NC_045512v2 21058 C21058T C T . . AC=3;AN=1125 +NC_045512v2 21077 C21077T C T . . AC=1;AN=1125 +NC_045512v2 21080 A21080C A C . . AC=1;AN=1125 +NC_045512v2 21099 G21099T G T . . AC=1;AN=1125 +NC_045512v2 21127 A21127G A G . . AC=1;AN=1125 +NC_045512v2 21131 A21131G A G . . AC=2;AN=1125 +NC_045512v2 21137 A21137G A G . . AC=5;AN=1125 +NC_045512v2 21145 C21145T C T . . AC=1;AN=1125 +NC_045512v2 21177 A21177G A G . . AC=1;AN=1125 +NC_045512v2 21193 G21193T G T . . AC=4;AN=1125 +NC_045512v2 21204 G21204T G T . . AC=4;AN=1125 +NC_045512v2 21205 C21205T C T . . AC=1;AN=1125 +NC_045512v2 21206 T21206G T G . . AC=1;AN=1125 +NC_045512v2 21219 C21219T C T . . AC=1;AN=1125 +NC_045512v2 21231 A21231G A G . . AC=1;AN=1125 +NC_045512v2 21234 C21234A,C21234T C A,T . . AC=1,1;AN=1125 +NC_045512v2 21255 G21255C,G21255T G C,T . . AC=55,2;AN=1125 +NC_045512v2 21291 T21291C T C . . AC=1;AN=1125 +NC_045512v2 21294 T21294A,T21294C T A,C . . AC=1,1;AN=1125 +NC_045512v2 21295 G21295A,G21295T G A,T . . AC=1,1;AN=1125 +NC_045512v2 21296 G21296A G A . . AC=1;AN=1125 +NC_045512v2 21302 C21302T C T . . AC=4;AN=1125 +NC_045512v2 21304 C21304A,C21304T C A,T . . AC=4,3;AN=1125 +NC_045512v2 21305 G21305A G A . . AC=3;AN=1125 +NC_045512v2 21306 C21306T C T . . AC=1;AN=1125 +NC_045512v2 21310 C21310A C A . . AC=1;AN=1125 +NC_045512v2 21312 A21312G A G . . AC=1;AN=1125 +NC_045512v2 21334 G21334T G T . . AC=2;AN=1125 +NC_045512v2 21352 A21352C A C . . AC=1;AN=1125 +NC_045512v2 21360 A21360C A C . . AC=1;AN=1125 +NC_045512v2 21364 C21364T C T . . AC=3;AN=1125 +NC_045512v2 21365 C21365T C T . . AC=2;AN=1125 +NC_045512v2 21368 T21368C T C . . AC=1;AN=1125 +NC_045512v2 21431 C21431T C T . . AC=1;AN=1125 +NC_045512v2 21464 A21464G A G . . AC=2;AN=1125 +NC_045512v2 21468 G21468A,G21468T G A,T . . AC=2,1;AN=1125 +NC_045512v2 21511 A21511G A G . . AC=1;AN=1125 +NC_045512v2 21515 A21515G A G . . AC=1;AN=1125 +NC_045512v2 21518 G21518T G T . . AC=2;AN=1125 +NC_045512v2 21538 G21538T G T . . AC=2;AN=1125 +NC_045512v2 21570 T21570G T G . . AC=2;AN=1125 +NC_045512v2 21588 C21588T C T . . AC=1;AN=1125 +NC_045512v2 21590 C21590T C T . . AC=1;AN=1125 +NC_045512v2 21595 C21595T C T . . AC=1;AN=1125 +NC_045512v2 21597 C21597T C T . . AC=3;AN=1125 +NC_045512v2 21600 G21600T G T . . AC=7;AN=1125 +NC_045512v2 21604 G21604T G T . . AC=2;AN=1125 +NC_045512v2 21606 G21606T G T . . AC=1;AN=1125 +NC_045512v2 21614 C21614T C T . . AC=21;AN=1125 +NC_045512v2 21618 C21618T C T . . AC=1;AN=1125 +NC_045512v2 21621 C21621A C A . . AC=2;AN=1125 +NC_045512v2 21624 G21624T G T . . AC=10;AN=1125 +NC_045512v2 21625 A21625G A G . . AC=1;AN=1125 +NC_045512v2 21627 C21627A C A . . AC=2;AN=1125 +NC_045512v2 21631 A21631T A T . . AC=1;AN=1125 +NC_045512v2 21635 C21635T C T . . AC=2;AN=1125 +NC_045512v2 21637 C21637T C T . . AC=3;AN=1125 +NC_045512v2 21638 C21638T C T . . AC=4;AN=1125 +NC_045512v2 21639 C21639T C T . . AC=1;AN=1125 +NC_045512v2 21641 G21641T G T . . AC=3;AN=1125 +NC_045512v2 21646 C21646T C T . . AC=3;AN=1125 +NC_045512v2 21648 C21648T C T . . AC=2;AN=1125 +NC_045512v2 21656 T21656C T C . . AC=1;AN=1125 +NC_045512v2 21660 C21660A C A . . AC=2;AN=1125 +NC_045512v2 21682 C21682T C T . . AC=2;AN=1125 +NC_045512v2 21717 A21717G A G . . AC=2;AN=1125 +NC_045512v2 21721 C21721T C T . . AC=2;AN=1125 +NC_045512v2 21724 G21724A,G21724T G A,T . . AC=4,15;AN=1125 +NC_045512v2 21731 C21731T C T . . AC=1;AN=1125 +NC_045512v2 21742 C21742T C T . . AC=2;AN=1125 +NC_045512v2 21745 T21745C T C . . AC=1;AN=1125 +NC_045512v2 21752 T21752C T C . . AC=1;AN=1125 +NC_045512v2 21753 G21753T G T . . AC=1;AN=1125 +NC_045512v2 21757 C21757T C T . . AC=4;AN=1125 +NC_045512v2 21760 T21760C T C . . AC=1;AN=1125 +NC_045512v2 21762 C21762T C T . . AC=2;AN=1125 +NC_045512v2 21770 G21770A G A . . AC=4;AN=1125 +NC_045512v2 21772 C21772T C T . . AC=6;AN=1125 +NC_045512v2 21775 T21775G T G . . AC=2;AN=1125 +NC_045512v2 21776 G21776T G T . . AC=1;AN=1125 +NC_045512v2 21777 G21777A G A . . AC=1;AN=1125 +NC_045512v2 21778 G21778A G A . . AC=2;AN=1125 +NC_045512v2 21780 C21780T C T . . AC=2;AN=1125 +NC_045512v2 21786 G21786T G T . . AC=3;AN=1125 +NC_045512v2 21789 C21789T C T . . AC=2;AN=1125 +NC_045512v2 21794 A21794G A G . . AC=1;AN=1125 +NC_045512v2 21800 G21800T G T . . AC=6;AN=1125 +NC_045512v2 21801 A21801C A C . . AC=3;AN=1125 +NC_045512v2 21802 T21802C T C . . AC=1;AN=1125 +NC_045512v2 21809 G21809A G A . . AC=1;AN=1125 +NC_045512v2 21811 C21811T C T . . AC=3;AN=1125 +NC_045512v2 21830 G21830C,G21830T G C,T . . AC=1,1;AN=1125 +NC_045512v2 21841 T21841A,T21841C T A,C . . AC=1,1;AN=1125 +NC_045512v2 21844 C21844T C T . . AC=1;AN=1125 +NC_045512v2 21846 C21846T C T . . AC=6;AN=1125 +NC_045512v2 21853 G21853T G T . . AC=1;AN=1125 +NC_045512v2 21855 C21855T C T . . AC=10;AN=1125 +NC_045512v2 21867 G21867T G T . . AC=1;AN=1125 +NC_045512v2 21890 T21890C T C . . AC=1;AN=1125 +NC_045512v2 21893 G21893A G A . . AC=1;AN=1125 +NC_045512v2 21910 C21910T C T . . AC=3;AN=1125 +NC_045512v2 21917 A21917G A G . . AC=1;AN=1125 +NC_045512v2 21944 A21944T A T . . AC=1;AN=1125 +NC_045512v2 21952 C21952T C T . . AC=2;AN=1125 +NC_045512v2 21973 T21973C T C . . AC=1;AN=1125 +NC_045512v2 21974 G21974C,G21974T G C,T . . AC=2,3;AN=1125 +NC_045512v2 21976 T21976C T C . . AC=2;AN=1125 +NC_045512v2 21997 C21997T C T . . AC=1;AN=1125 +NC_045512v2 21998 C21998T C T . . AC=2;AN=1125 +NC_045512v2 22000 C22000T C T . . AC=1;AN=1125 +NC_045512v2 22001 A22001G A G . . AC=1;AN=1125 +NC_045512v2 22017 G22017T G T . . AC=4;AN=1125 +NC_045512v2 22018 G22018T G T . . AC=6;AN=1125 +NC_045512v2 22020 T22020C T C . . AC=4;AN=1125 +NC_045512v2 22021 G22021A,G22021T G A,T . . AC=1,2;AN=1125 +NC_045512v2 22022 G22022A G A . . AC=1;AN=1125 +NC_045512v2 22024 A22024C A C . . AC=1;AN=1125 +NC_045512v2 22026 G22026T G T . . AC=1;AN=1125 +NC_045512v2 22051 G22051T G T . . AC=2;AN=1125 +NC_045512v2 22052 A22052C A C . . AC=1;AN=1125 +NC_045512v2 22053 A22053C A C . . AC=2;AN=1125 +NC_045512v2 22075 C22075T C T . . AC=2;AN=1125 +NC_045512v2 22088 C22088T C T . . AC=2;AN=1125 +NC_045512v2 22093 G22093A G A . . AC=3;AN=1125 +NC_045512v2 22096 C22096T C T . . AC=1;AN=1125 +NC_045512v2 22101 A22101T A T . . AC=1;AN=1125 +NC_045512v2 22104 G22104T G T . . AC=1;AN=1125 +NC_045512v2 22108 A22108G A G . . AC=1;AN=1125 +NC_045512v2 22112 G22112A G A . . AC=1;AN=1125 +NC_045512v2 22116 A22116G A G . . AC=2;AN=1125 +NC_045512v2 22120 C22120T C T . . AC=2;AN=1125 +NC_045512v2 22127 C22127T C T . . AC=6;AN=1125 +NC_045512v2 22132 G22132T G T . . AC=2;AN=1125 +NC_045512v2 22150 T22150C T C . . AC=1;AN=1125 +NC_045512v2 22154 G22154T G T . . AC=1;AN=1125 +NC_045512v2 22155 A22155G A G . . AC=2;AN=1125 +NC_045512v2 22162 T22162C T C . . AC=2;AN=1125 +NC_045512v2 22182 A22182G A G . . AC=2;AN=1125 +NC_045512v2 22189 T22189C T C . . AC=1;AN=1125 +NC_045512v2 22199 G22199T G T . . AC=2;AN=1125 +NC_045512v2 22201 G22201T G T . . AC=2;AN=1125 +NC_045512v2 22203 G22203T G T . . AC=2;AN=1125 +NC_045512v2 22205 G22205C,G22205T G C,T . . AC=2,2;AN=1125 +NC_045512v2 22206 A22206G A G . . AC=4;AN=1125 +NC_045512v2 22208 C22208T C T . . AC=3;AN=1125 +NC_045512v2 22210 C22210T C T . . AC=2;AN=1125 +NC_045512v2 22222 T22222C T C . . AC=1;AN=1125 +NC_045512v2 22224 C22224T C T . . AC=1;AN=1125 +NC_045512v2 22225 G22225A,G22225T G A,T . . AC=2,3;AN=1125 +NC_045512v2 22227 C22227T C T . . AC=56;AN=1125 +NC_045512v2 22244 G22244T G T . . AC=1;AN=1125 +NC_045512v2 22256 G22256T G T . . AC=2;AN=1125 +NC_045512v2 22264 C22264T C T . . AC=4;AN=1125 +NC_045512v2 22286 C22286T C T . . AC=1;AN=1125 +NC_045512v2 22295 C22295T C T . . AC=1;AN=1125 +NC_045512v2 22299 G22299A G A . . AC=1;AN=1125 +NC_045512v2 22301 A22301G A G . . AC=2;AN=1125 +NC_045512v2 22314 C22314T C T . . AC=2;AN=1125 +NC_045512v2 22320 A22320G A G . . AC=2;AN=1125 +NC_045512v2 22323 C22323T C T . . AC=3;AN=1125 +NC_045512v2 22325 T22325C T C . . AC=1;AN=1125 +NC_045512v2 22326 C22326T C T . . AC=2;AN=1125 +NC_045512v2 22330 A22330G A G . . AC=1;AN=1125 +NC_045512v2 22332 G22332A,G22332T G A,T . . AC=1,1;AN=1125 +NC_045512v2 22345 T22345C T C . . AC=1;AN=1125 +NC_045512v2 22346 G22346T G T . . AC=5;AN=1125 +NC_045512v2 22349 G22349T G T . . AC=2;AN=1125 +NC_045512v2 22363 G22363T G T . . AC=1;AN=1125 +NC_045512v2 22369 T22369C T C . . AC=1;AN=1125 +NC_045512v2 22381 G22381T G T . . AC=1;AN=1125 +NC_045512v2 22388 C22388T C T . . AC=2;AN=1125 +NC_045512v2 22409 G22409T G T . . AC=1;AN=1125 +NC_045512v2 22435 T22435C T C . . AC=1;AN=1125 +NC_045512v2 22438 A22438T A T . . AC=2;AN=1125 +NC_045512v2 22441 T22441G T G . . AC=1;AN=1125 +NC_045512v2 22444 C22444T C T . . AC=32;AN=1125 +NC_045512v2 22450 C22450T C T . . AC=2;AN=1125 +NC_045512v2 22457 A22457G A G . . AC=1;AN=1125 +NC_045512v2 22468 G22468T G T . . AC=1;AN=1125 +NC_045512v2 22471 G22471T G T . . AC=1;AN=1125 +NC_045512v2 22477 C22477T C T . . AC=5;AN=1125 +NC_045512v2 22480 C22480A,C22480T C A,T . . AC=2,1;AN=1125 +NC_045512v2 22482 C22482T C T . . AC=2;AN=1125 +NC_045512v2 22484 G22484T G T . . AC=1;AN=1125 +NC_045512v2 22487 G22487C G C . . AC=2;AN=1125 +NC_045512v2 22498 C22498T C T . . AC=1;AN=1125 +NC_045512v2 22522 C22522T C T . . AC=1;AN=1125 +NC_045512v2 22525 A22525G A G . . AC=2;AN=1125 +NC_045512v2 22528 A22528G A G . . AC=1;AN=1125 +NC_045512v2 22588 T22588C T C . . AC=1;AN=1125 +NC_045512v2 22606 A22606G A G . . AC=2;AN=1125 +NC_045512v2 22627 G22627A G A . . AC=2;AN=1125 +NC_045512v2 22645 T22645C T C . . AC=1;AN=1125 +NC_045512v2 22664 C22664T C T . . AC=1;AN=1125 +NC_045512v2 22672 T22672C T C . . AC=1;AN=1125 +NC_045512v2 22681 A22681C A C . . AC=1;AN=1125 +NC_045512v2 22687 C22687T C T . . AC=2;AN=1125 +NC_045512v2 22708 G22708T G T . . AC=1;AN=1125 +NC_045512v2 22712 C22712T C T . . AC=1;AN=1125 +NC_045512v2 22713 C22713T C T . . AC=4;AN=1125 +NC_045512v2 22756 T22756C T C . . AC=1;AN=1125 +NC_045512v2 22801 G22801T G T . . AC=2;AN=1125 +NC_045512v2 22812 A22812C A C . . AC=1;AN=1125 +NC_045512v2 22813 G22813T G T . . AC=4;AN=1125 +NC_045512v2 22825 T22825C T C . . AC=1;AN=1125 +NC_045512v2 22842 A22842T A T . . AC=1;AN=1125 +NC_045512v2 22843 T22843C T C . . AC=2;AN=1125 +NC_045512v2 22858 C22858T C T . . AC=1;AN=1125 +NC_045512v2 22879 C22879A C A . . AC=27;AN=1125 +NC_045512v2 22896 T22896C T C . . AC=1;AN=1125 +NC_045512v2 22912 T22912G T G . . AC=1;AN=1125 +NC_045512v2 22917 T22917G T G . . AC=6;AN=1125 +NC_045512v2 22918 G22918T G T . . AC=3;AN=1125 +NC_045512v2 22920 A22920T A T . . AC=1;AN=1125 +NC_045512v2 22938 C22938A C A . . AC=2;AN=1125 +NC_045512v2 22987 C22987T C T . . AC=3;AN=1125 +NC_045512v2 22992 G22992A,G22992T G A,T . . AC=10,3;AN=1125 +NC_045512v2 22993 C22993T C T . . AC=1;AN=1125 +NC_045512v2 22995 C22995A,C22995T C A,T . . AC=1,2;AN=1125 +NC_045512v2 22998 C22998T C T . . AC=1;AN=1125 +NC_045512v2 23006 G23006A G A . . AC=1;AN=1125 +NC_045512v2 23009 G23009T G T . . AC=1;AN=1125 +NC_045512v2 23012 G23012A G A . . AC=18;AN=1125 +NC_045512v2 23029 C23029T C T . . AC=2;AN=1125 +NC_045512v2 23042 T23042C T C . . AC=1;AN=1125 +NC_045512v2 23053 C23053T C T . . AC=2;AN=1125 +NC_045512v2 23062 T23062C T C . . AC=1;AN=1125 +NC_045512v2 23063 A23063T A T . . AC=12;AN=1125 +NC_045512v2 23064 A23064C A C . . AC=2;AN=1125 +NC_045512v2 23084 T23084C T C . . AC=1;AN=1125 +NC_045512v2 23114 C23114T C T . . AC=1;AN=1125 +NC_045512v2 23120 G23120T G T . . AC=4;AN=1125 +NC_045512v2 23121 C23121T C T . . AC=1;AN=1125 +NC_045512v2 23125 A23125T A T . . AC=1;AN=1125 +NC_045512v2 23126 G23126T G T . . AC=3;AN=1125 +NC_045512v2 23127 C23127T C T . . AC=2;AN=1125 +NC_045512v2 23170 C23170T C T . . AC=1;AN=1125 +NC_045512v2 23173 A23173G A G . . AC=1;AN=1125 +NC_045512v2 23176 T23176C T C . . AC=1;AN=1125 +NC_045512v2 23179 C23179T C T . . AC=1;AN=1125 +NC_045512v2 23185 C23185T C T . . AC=1;AN=1125 +NC_045512v2 23191 C23191T C T . . AC=6;AN=1125 +NC_045512v2 23202 C23202T C T . . AC=1;AN=1125 +NC_045512v2 23207 A23207G A G . . AC=2;AN=1125 +NC_045512v2 23208 C23208T C T . . AC=1;AN=1125 +NC_045512v2 23220 C23220A C A . . AC=1;AN=1125 +NC_045512v2 23227 T23227C T C . . AC=1;AN=1125 +NC_045512v2 23233 A23233G A G . . AC=1;AN=1125 +NC_045512v2 23234 A23234G A G . . AC=1;AN=1125 +NC_045512v2 23248 C23248T C T . . AC=4;AN=1125 +NC_045512v2 23255 T23255C T C . . AC=2;AN=1125 +NC_045512v2 23266 C23266T C T . . AC=1;AN=1125 +NC_045512v2 23271 C23271A C A . . AC=4;AN=1125 +NC_045512v2 23287 T23287C T C . . AC=2;AN=1125 +NC_045512v2 23296 T23296C T C . . AC=1;AN=1125 +NC_045512v2 23299 A23299G A G . . AC=1;AN=1125 +NC_045512v2 23302 G23302A G A . . AC=1;AN=1125 +NC_045512v2 23309 G23309C G C . . AC=2;AN=1125 +NC_045512v2 23311 G23311C,G23311T G C,T . . AC=6,1;AN=1125 +NC_045512v2 23324 A23324T A T . . AC=1;AN=1125 +NC_045512v2 23362 A23362T A T . . AC=1;AN=1125 +NC_045512v2 23401 G23401A,G23401T G A,T . . AC=3,1;AN=1125 +NC_045512v2 23403 A23403G A G . . AC=1119;AN=1125 +NC_045512v2 23406 T23406C T C . . AC=1;AN=1125 +NC_045512v2 23422 C23422T C T . . AC=2;AN=1125 +NC_045512v2 23426 G23426C G C . . AC=1;AN=1125 +NC_045512v2 23430 C23430T C T . . AC=1;AN=1125 +NC_045512v2 23431 T23431C T C . . AC=1;AN=1125 +NC_045512v2 23438 G23438T G T . . AC=1;AN=1125 +NC_045512v2 23441 G23441A G A . . AC=1;AN=1125 +NC_045512v2 23453 C23453T C T . . AC=2;AN=1125 +NC_045512v2 23480 T23480G T G . . AC=2;AN=1125 +NC_045512v2 23501 G23501T G T . . AC=1;AN=1125 +NC_045512v2 23503 A23503G,A23503T A G,T . . AC=1,1;AN=1125 +NC_045512v2 23506 C23506T C T . . AC=1;AN=1125 +NC_045512v2 23522 G23522A,G23522C G A,C . . AC=2,2;AN=1125 +NC_045512v2 23525 C23525T C T . . AC=9;AN=1125 +NC_045512v2 23534 A23534T A T . . AC=1;AN=1125 +NC_045512v2 23536 C23536A,C23536T C A,T . . AC=1,2;AN=1125 +NC_045512v2 23548 T23548C T C . . AC=2;AN=1125 +NC_045512v2 23551 C23551T C T . . AC=3;AN=1125 +NC_045512v2 23557 C23557T C T . . AC=1;AN=1125 +NC_045512v2 23586 A23586G A G . . AC=3;AN=1125 +NC_045512v2 23587 G23587C,G23587T G C,T . . AC=2,2;AN=1125 +NC_045512v2 23588 A23588T A T . . AC=1;AN=1125 +NC_045512v2 23593 G23593C,G23593T G C,T . . AC=7,2;AN=1125 +NC_045512v2 23595 C23595T C T . . AC=1;AN=1125 +NC_045512v2 23599 T23599A T A . . AC=1;AN=1125 +NC_045512v2 23604 C23604A,C23604T C A,T . . AC=12,2;AN=1125 +NC_045512v2 23605 T23605C T C . . AC=1;AN=1125 +NC_045512v2 23608 G23608T G T . . AC=1;AN=1125 +NC_045512v2 23611 G23611A,G23611T G A,T . . AC=1,1;AN=1125 +NC_045512v2 23612 G23612A G A . . AC=1;AN=1125 +NC_045512v2 23625 C23625T C T . . AC=2;AN=1125 +NC_045512v2 23628 G23628T G T . . AC=2;AN=1125 +NC_045512v2 23629 T23629G T G . . AC=1;AN=1125 +NC_045512v2 23631 A23631G A G . . AC=1;AN=1125 +NC_045512v2 23633 T23633G T G . . AC=2;AN=1125 +NC_045512v2 23635 C23635T C T . . AC=1;AN=1125 +NC_045512v2 23644 C23644T C T . . AC=1;AN=1125 +NC_045512v2 23655 C23655T C T . . AC=2;AN=1125 +NC_045512v2 23664 C23664T C T . . AC=7;AN=1125 +NC_045512v2 23675 G23675C G C . . AC=1;AN=1125 +NC_045512v2 23678 G23678T G T . . AC=1;AN=1125 +NC_045512v2 23679 C23679T C T . . AC=1;AN=1125 +NC_045512v2 23683 C23683T C T . . AC=2;AN=1125 +NC_045512v2 23685 C23685T C T . . AC=1;AN=1125 +NC_045512v2 23686 T23686C T C . . AC=1;AN=1125 +NC_045512v2 23705 C23705T C T . . AC=1;AN=1125 +NC_045512v2 23709 C23709T C T . . AC=6;AN=1125 +NC_045512v2 23718 C23718T C T . . AC=1;AN=1125 +NC_045512v2 23730 C23730T C T . . AC=2;AN=1125 +NC_045512v2 23731 C23731T C T . . AC=20;AN=1125 +NC_045512v2 23746 A23746G A G . . AC=1;AN=1125 +NC_045512v2 23755 G23755T G T . . AC=1;AN=1125 +NC_045512v2 23756 A23756G,A23756T A G,T . . AC=2,4;AN=1125 +NC_045512v2 23782 G23782T G T . . AC=1;AN=1125 +NC_045512v2 23796 A23796G A G . . AC=1;AN=1125 +NC_045512v2 23802 C23802T C T . . AC=3;AN=1125 +NC_045512v2 23813 A23813G A G . . AC=1;AN=1125 +NC_045512v2 23824 G23824T G T . . AC=1;AN=1125 +NC_045512v2 23849 T23849C T C . . AC=2;AN=1125 +NC_045512v2 23854 C23854T C T . . AC=3;AN=1125 +NC_045512v2 23855 C23855T C T . . AC=1;AN=1125 +NC_045512v2 23856 G23856T G T . . AC=1;AN=1125 +NC_045512v2 23868 G23868T G T . . AC=7;AN=1125 +NC_045512v2 23869 A23869G A G . . AC=1;AN=1125 +NC_045512v2 23876 G23876A G A . . AC=6;AN=1125 +NC_045512v2 23893 C23893T C T . . AC=1;AN=1125 +NC_045512v2 23896 C23896T C T . . AC=2;AN=1125 +NC_045512v2 23905 T23905A T A . . AC=1;AN=1125 +NC_045512v2 23909 G23909A G A . . AC=1;AN=1125 +NC_045512v2 23910 C23910T C T . . AC=1;AN=1125 +NC_045512v2 23929 C23929T C T . . AC=1;AN=1125 +NC_045512v2 23934 C23934T C T . . AC=2;AN=1125 +NC_045512v2 23947 A23947G A G . . AC=1;AN=1125 +NC_045512v2 23948 G23948C,G23948T G C,T . . AC=1,2;AN=1125 +NC_045512v2 23949 A23949G A G . . AC=2;AN=1125 +NC_045512v2 23986 T23986C T C . . AC=3;AN=1125 +NC_045512v2 23989 A23989T A T . . AC=1;AN=1125 +NC_045512v2 23998 A23998G A G . . AC=2;AN=1125 +NC_045512v2 24007 G24007A G A . . AC=2;AN=1125 +NC_045512v2 24014 A24014G A G . . AC=1;AN=1125 +NC_045512v2 24023 C24023T C T . . AC=3;AN=1125 +NC_045512v2 24026 C24026T C T . . AC=1;AN=1125 +NC_045512v2 24031 C24031T C T . . AC=1;AN=1125 +NC_045512v2 24034 C24034T C T . . AC=2;AN=1125 +NC_045512v2 24062 A24062G A G . . AC=1;AN=1125 +NC_045512v2 24063 T24063C T C . . AC=1;AN=1125 +NC_045512v2 24070 A24070T A T . . AC=1;AN=1125 +NC_045512v2 24076 T24076A,T24076C T A,C . . AC=2,2;AN=1125 +NC_045512v2 24077 G24077A,G24077T G A,T . . AC=1,1;AN=1125 +NC_045512v2 24082 C24082T C T . . AC=2;AN=1125 +NC_045512v2 24088 T24088C T C . . AC=2;AN=1125 +NC_045512v2 24095 G24095T G T . . AC=1;AN=1125 +NC_045512v2 24098 G24098T G T . . AC=1;AN=1125 +NC_045512v2 24102 G24102A G A . . AC=2;AN=1125 +NC_045512v2 24106 C24106T C T . . AC=3;AN=1125 +NC_045512v2 24116 G24116A G A . . AC=1;AN=1125 +NC_045512v2 24129 A24129G A G . . AC=2;AN=1125 +NC_045512v2 24130 C24130T C T . . AC=4;AN=1125 +NC_045512v2 24138 C24138A C A . . AC=3;AN=1125 +NC_045512v2 24175 T24175C T C . . AC=2;AN=1125 +NC_045512v2 24197 G24197T G T . . AC=5;AN=1125 +NC_045512v2 24199 G24199T G T . . AC=1;AN=1125 +NC_045512v2 24202 T24202C T C . . AC=4;AN=1125 +NC_045512v2 24205 A24205T A T . . AC=2;AN=1125 +NC_045512v2 24224 T24224C T C . . AC=2;AN=1125 +NC_045512v2 24232 A24232G A G . . AC=2;AN=1125 +NC_045512v2 24258 C24258T C T . . AC=1;AN=1125 +NC_045512v2 24262 G24262T G T . . AC=2;AN=1125 +NC_045512v2 24326 T24326C T C . . AC=1;AN=1125 +NC_045512v2 24334 C24334T C T . . AC=3;AN=1125 +NC_045512v2 24348 G24348T G T . . AC=1;AN=1125 +NC_045512v2 24349 T24349C T C . . AC=4;AN=1125 +NC_045512v2 24368 G24368C,G24368T G C,T . . AC=1,6;AN=1125 +NC_045512v2 24369 A24369T A T . . AC=1;AN=1125 +NC_045512v2 24370 C24370T C T . . AC=1;AN=1125 +NC_045512v2 24378 C24378T C T . . AC=5;AN=1125 +NC_045512v2 24381 C24381T C T . . AC=3;AN=1125 +NC_045512v2 24382 C24382T C T . . AC=2;AN=1125 +NC_045512v2 24383 A24383G A G . . AC=1;AN=1125 +NC_045512v2 24442 C24442T C T . . AC=3;AN=1125 +NC_045512v2 24478 A24478T A T . . AC=1;AN=1125 +NC_045512v2 24506 T24506G T G . . AC=4;AN=1125 +NC_045512v2 24586 G24586T G T . . AC=1;AN=1125 +NC_045512v2 24621 C24621A,C24621T C A,T . . AC=1,4;AN=1125 +NC_045512v2 24642 C24642T C T . . AC=2;AN=1125 +NC_045512v2 24718 C24718A C A . . AC=1;AN=1125 +NC_045512v2 24734 C24734T C T . . AC=1;AN=1125 +NC_045512v2 24739 T24739C T C . . AC=2;AN=1125 +NC_045512v2 24743 G24743A G A . . AC=1;AN=1125 +NC_045512v2 24748 C24748T C T . . AC=2;AN=1125 +NC_045512v2 24755 G24755T G T . . AC=1;AN=1125 +NC_045512v2 24757 G24757T G T . . AC=1;AN=1125 +NC_045512v2 24764 G24764T G T . . AC=2;AN=1125 +NC_045512v2 24769 T24769C T C . . AC=2;AN=1125 +NC_045512v2 24775 A24775C A C . . AC=1;AN=1125 +NC_045512v2 24781 G24781T G T . . AC=4;AN=1125 +NC_045512v2 24794 G24794T G T . . AC=6;AN=1125 +NC_045512v2 24796 T24796C T C . . AC=2;AN=1125 +NC_045512v2 24805 T24805C T C . . AC=2;AN=1125 +NC_045512v2 24814 T24814C T C . . AC=2;AN=1125 +NC_045512v2 24844 C24844T C T . . AC=1;AN=1125 +NC_045512v2 24862 A24862G A G . . AC=2;AN=1125 +NC_045512v2 24865 C24865T C T . . AC=1;AN=1125 +NC_045512v2 24867 G24867T G T . . AC=1;AN=1125 +NC_045512v2 24872 G24872T G T . . AC=1;AN=1125 +NC_045512v2 24879 A24879G A G . . AC=1;AN=1125 +NC_045512v2 24883 G24883T G T . . AC=1;AN=1125 +NC_045512v2 24894 A24894C A C . . AC=1;AN=1125 +NC_045512v2 24904 C24904T C T . . AC=4;AN=1125 +NC_045512v2 24910 T24910C T C . . AC=14;AN=1125 +NC_045512v2 24912 C24912T C T . . AC=1;AN=1125 +NC_045512v2 24914 G24914C,G24914T G C,T . . AC=4,1;AN=1125 +NC_045512v2 24916 C24916T C T . . AC=1;AN=1125 +NC_045512v2 24923 T24923C T C . . AC=2;AN=1125 +NC_045512v2 24925 T24925C T C . . AC=3;AN=1125 +NC_045512v2 24926 G24926T G T . . AC=3;AN=1125 +NC_045512v2 24977 G24977C G C . . AC=1;AN=1125 +NC_045512v2 24991 T24991A T A . . AC=1;AN=1125 +NC_045512v2 25000 C25000T C T . . AC=2;AN=1125 +NC_045512v2 25008 A25008G A G . . AC=1;AN=1125 +NC_045512v2 25012 G25012A,G25012T G A,T . . AC=1,2;AN=1125 +NC_045512v2 25037 C25037T C T . . AC=2;AN=1125 +NC_045512v2 25039 T25039C T C . . AC=1;AN=1125 +NC_045512v2 25046 C25046T C T . . AC=3;AN=1125 +NC_045512v2 25047 C25047T C T . . AC=1;AN=1125 +NC_045512v2 25048 A25048G A G . . AC=2;AN=1125 +NC_045512v2 25049 G25049T G T . . AC=4;AN=1125 +NC_045512v2 25050 A25050T A T . . AC=1;AN=1125 +NC_045512v2 25062 G25062T G T . . AC=2;AN=1125 +NC_045512v2 25075 C25075T C T . . AC=2;AN=1125 +NC_045512v2 25078 T25078C T C . . AC=1;AN=1125 +NC_045512v2 25088 G25088T G T . . AC=9;AN=1125 +NC_045512v2 25117 C25117T C T . . AC=1;AN=1125 +NC_045512v2 25123 T25123C T C . . AC=1;AN=1125 +NC_045512v2 25135 G25135T G T . . AC=1;AN=1125 +NC_045512v2 25160 C25160T C T . . AC=1;AN=1125 +NC_045512v2 25162 C25162A C A . . AC=1;AN=1125 +NC_045512v2 25163 C25163A C A . . AC=1;AN=1125 +NC_045512v2 25166 G25166C G C . . AC=4;AN=1125 +NC_045512v2 25171 T25171C T C . . AC=1;AN=1125 +NC_045512v2 25177 G25177T G T . . AC=1;AN=1125 +NC_045512v2 25186 G25186A,G25186T G A,T . . AC=1,1;AN=1125 +NC_045512v2 25201 A25201G A G . . AC=1;AN=1125 +NC_045512v2 25207 C25207T C T . . AC=6;AN=1125 +NC_045512v2 25218 G25218T G T . . AC=2;AN=1125 +NC_045512v2 25244 G25244C,G25244T G C,T . . AC=1,1;AN=1125 +NC_045512v2 25249 G25249T G T . . AC=5;AN=1125 +NC_045512v2 25250 G25250T G T . . AC=1;AN=1125 +NC_045512v2 25252 G25252T G T . . AC=1;AN=1125 +NC_045512v2 25255 A25255G A G . . AC=1;AN=1125 +NC_045512v2 25266 G25266T G T . . AC=1;AN=1125 +NC_045512v2 25273 G25273T G T . . AC=1;AN=1125 +NC_045512v2 25276 C25276A C A . . AC=2;AN=1125 +NC_045512v2 25302 G25302T G T . . AC=1;AN=1125 +NC_045512v2 25303 T25303C T C . . AC=1;AN=1125 +NC_045512v2 25304 T25304C T C . . AC=1;AN=1125 +NC_045512v2 25306 T25306C T C . . AC=1;AN=1125 +NC_045512v2 25311 G25311T G T . . AC=4;AN=1125 +NC_045512v2 25312 T25312C T C . . AC=1;AN=1125 +NC_045512v2 25316 T25316C T C . . AC=2;AN=1125 +NC_045512v2 25318 C25318T C T . . AC=1;AN=1125 +NC_045512v2 25320 G25320T G T . . AC=1;AN=1125 +NC_045512v2 25327 A25327G A G . . AC=1;AN=1125 +NC_045512v2 25340 G25340T G T . . AC=1;AN=1125 +NC_045512v2 25349 C25349A C A . . AC=2;AN=1125 +NC_045512v2 25350 C25350T C T . . AC=3;AN=1125 +NC_045512v2 25351 A25351T A T . . AC=1;AN=1125 +NC_045512v2 25386 C25386T C T . . AC=2;AN=1125 +NC_045512v2 25410 A25410C A C . . AC=1;AN=1125 +NC_045512v2 25413 C25413T C T . . AC=3;AN=1125 +NC_045512v2 25429 G25429A,G25429T G A,T . . AC=1,26;AN=1125 +NC_045512v2 25433 C25433T C T . . AC=3;AN=1125 +NC_045512v2 25437 G25437T G T . . AC=5;AN=1125 +NC_045512v2 25440 G25440A,G25440T G A,T . . AC=2,2;AN=1125 +NC_045512v2 25442 A25442T A T . . AC=1;AN=1125 +NC_045512v2 25444 G25444A G A . . AC=1;AN=1125 +NC_045512v2 25445 G25445T G T . . AC=4;AN=1125 +NC_045512v2 25448 A25448G A G . . AC=1;AN=1125 +NC_045512v2 25456 G25456T G T . . AC=1;AN=1125 +NC_045512v2 25459 G25459T G T . . AC=1;AN=1125 +NC_045512v2 25460 C25460T C T . . AC=2;AN=1125 +NC_045512v2 25466 C25466A,C25466T C A,T . . AC=1,1;AN=1125 +NC_045512v2 25471 G25471C,G25471T G C,T . . AC=1,2;AN=1125 +NC_045512v2 25473 T25473C T C . . AC=2;AN=1125 +NC_045512v2 25479 T25479A T A . . AC=1;AN=1125 +NC_045512v2 25494 G25494T G T . . AC=8;AN=1125 +NC_045512v2 25504 C25504G C G . . AC=1;AN=1125 +NC_045512v2 25505 A25505C,A25505G A C,G . . AC=2,6;AN=1125 +NC_045512v2 25510 T25510A T A . . AC=1;AN=1125 +NC_045512v2 25511 C25511T C T . . AC=3;AN=1125 +NC_045512v2 25516 C25516T C T . . AC=1;AN=1125 +NC_045512v2 25517 C25517T C T . . AC=2;AN=1125 +NC_045512v2 25519 T25519G T G . . AC=2;AN=1125 +NC_045512v2 25521 C25521T C T . . AC=2;AN=1125 +NC_045512v2 25523 G25523T G T . . AC=4;AN=1125 +NC_045512v2 25524 A25524G A G . . AC=2;AN=1125 +NC_045512v2 25528 C25528T C T . . AC=4;AN=1125 +NC_045512v2 25538 G25538T G T . . AC=1;AN=1125 +NC_045512v2 25544 C25544T C T . . AC=2;AN=1125 +NC_045512v2 25546 C25546T C T . . AC=4;AN=1125 +NC_045512v2 25552 G25552T G T . . AC=8;AN=1125 +NC_045512v2 25553 C25553T C T . . AC=4;AN=1125 +NC_045512v2 25555 G25555T G T . . AC=1;AN=1125 +NC_045512v2 25563 G25563C,G25563T G C,T . . AC=2,377;AN=1125 +NC_045512v2 25570 T25570C T C . . AC=1;AN=1125 +NC_045512v2 25572 C25572T C T . . AC=2;AN=1125 +NC_045512v2 25575 A25575C,A25575G A C,G . . AC=2,1;AN=1125 +NC_045512v2 25577 T25577C,T25577G T C,G . . AC=3,1;AN=1125 +NC_045512v2 25584 C25584A,C25584T C A,T . . AC=1,3;AN=1125 +NC_045512v2 25595 G25595A,G25595T G A,T . . AC=1,1;AN=1125 +NC_045512v2 25599 G25599T G T . . AC=3;AN=1125 +NC_045512v2 25603 C25603T C T . . AC=1;AN=1125 +NC_045512v2 25606 G25606T G T . . AC=3;AN=1125 +NC_045512v2 25611 C25611T C T . . AC=1;AN=1125 +NC_045512v2 25613 C25613G C G . . AC=1;AN=1125 +NC_045512v2 25614 C25614T C T . . AC=3;AN=1125 +NC_045512v2 25617 G25617T G T . . AC=10;AN=1125 +NC_045512v2 25624 C25624T C T . . AC=2;AN=1125 +NC_045512v2 25626 C25626G,C25626T C G,T . . AC=1,2;AN=1125 +NC_045512v2 25642 C25642T C T . . AC=2;AN=1125 +NC_045512v2 25644 G25644T G T . . AC=1;AN=1125 +NC_045512v2 25665 C25665T C T . . AC=4;AN=1125 +NC_045512v2 25667 C25667T C T . . AC=4;AN=1125 +NC_045512v2 25672 C25672T C T . . AC=1;AN=1125 +NC_045512v2 25681 G25681A G A . . AC=1;AN=1125 +NC_045512v2 25687 G25687A,G25687T G A,T . . AC=2,3;AN=1125 +NC_045512v2 25688 C25688T C T . . AC=4;AN=1125 +NC_045512v2 25690 G25690A G A . . AC=1;AN=1125 +NC_045512v2 25699 G25699T G T . . AC=2;AN=1125 +NC_045512v2 25705 T25705C T C . . AC=2;AN=1125 +NC_045512v2 25710 C25710T C T . . AC=8;AN=1125 +NC_045512v2 25713 T25713C T C . . AC=2;AN=1125 +NC_045512v2 25714 C25714T C T . . AC=2;AN=1125 +NC_045512v2 25720 G25720T G T . . AC=2;AN=1125 +NC_045512v2 25721 C25721T C T . . AC=2;AN=1125 +NC_045512v2 25728 C25728T C T . . AC=6;AN=1125 +NC_045512v2 25731 C25731T C T . . AC=7;AN=1125 +NC_045512v2 25732 T25732G T G . . AC=1;AN=1125 +NC_045512v2 25740 G25740T G T . . AC=1;AN=1125 +NC_045512v2 25747 A25747C A C . . AC=1;AN=1125 +NC_045512v2 25767 G25767T G T . . AC=2;AN=1125 +NC_045512v2 25775 G25775T G T . . AC=3;AN=1125 +NC_045512v2 25776 G25776T G T . . AC=2;AN=1125 +NC_045512v2 25777 C25777T C T . . AC=2;AN=1125 +NC_045512v2 25783 T25783C T C . . AC=2;AN=1125 +NC_045512v2 25784 G25784T G T . . AC=2;AN=1125 +NC_045512v2 25785 G25785T G T . . AC=7;AN=1125 +NC_045512v2 25791 C25791T C T . . AC=4;AN=1125 +NC_045512v2 25793 G25793A,G25793T G A,T . . AC=1,2;AN=1125 +NC_045512v2 25797 C25797T C T . . AC=2;AN=1125 +NC_045512v2 25800 A25800T A T . . AC=1;AN=1125 +NC_045512v2 25801 A25801T A T . . AC=1;AN=1125 +NC_045512v2 25806 A25806G A G . . AC=1;AN=1125 +NC_045512v2 25814 A25814G A G . . AC=1;AN=1125 +NC_045512v2 25831 C25831T C T . . AC=3;AN=1125 +NC_045512v2 25844 C25844T C T . . AC=5;AN=1125 +NC_045512v2 25855 G25855T G T . . AC=2;AN=1125 +NC_045512v2 25856 A25856C A C . . AC=2;AN=1125 +NC_045512v2 25872 C25872T C T . . AC=1;AN=1125 +NC_045512v2 25886 C25886T C T . . AC=1;AN=1125 +NC_045512v2 25889 C25889T C T . . AC=1;AN=1125 +NC_045512v2 25894 G25894A G A . . AC=1;AN=1125 +NC_045512v2 25896 C25896T C T . . AC=1;AN=1125 +NC_045512v2 25904 C25904T C T . . AC=13;AN=1125 +NC_045512v2 25906 G25906C,G25906T G C,T . . AC=6,3;AN=1125 +NC_045512v2 25907 G25907T G T . . AC=3;AN=1125 +NC_045512v2 25910 A25910C,A25910G A C,G . . AC=1,2;AN=1125 +NC_045512v2 25911 T25911G T G . . AC=1;AN=1125 +NC_045512v2 25912 G25912T G T . . AC=2;AN=1125 +NC_045512v2 25916 C25916T C T . . AC=8;AN=1125 +NC_045512v2 25919 C25919T C T . . AC=2;AN=1125 +NC_045512v2 25922 G25922T G T . . AC=1;AN=1125 +NC_045512v2 25931 C25931A C A . . AC=1;AN=1125 +NC_045512v2 25936 C25936T C T . . AC=2;AN=1125 +NC_045512v2 25946 A25946C A C . . AC=1;AN=1125 +NC_045512v2 25947 G25947C,G25947T G C,T . . AC=5,7;AN=1125 +NC_045512v2 25948 A25948T A T . . AC=1;AN=1125 +NC_045512v2 25949 T25949C T C . . AC=1;AN=1125 +NC_045512v2 25963 G25963A G A . . AC=1;AN=1125 +NC_045512v2 25970 G25970T G T . . AC=1;AN=1125 +NC_045512v2 25971 G25971A G A . . AC=1;AN=1125 +NC_045512v2 25972 G25972A G A . . AC=2;AN=1125 +NC_045512v2 25976 C25976A C A . . AC=2;AN=1125 +NC_045512v2 25996 G25996A,G25996T G A,T . . AC=2,6;AN=1125 +NC_045512v2 26010 C26010T C T . . AC=1;AN=1125 +NC_045512v2 26013 C26013T C T . . AC=1;AN=1125 +NC_045512v2 26020 G26020T G T . . AC=2;AN=1125 +NC_045512v2 26022 C26022T C T . . AC=1;AN=1125 +NC_045512v2 26029 C26029A C A . . AC=1;AN=1125 +NC_045512v2 26038 T26038C T C . . AC=3;AN=1125 +NC_045512v2 26056 G26056T G T . . AC=2;AN=1125 +NC_045512v2 26058 C26058T C T . . AC=1;AN=1125 +NC_045512v2 26060 C26060T C T . . AC=8;AN=1125 +NC_045512v2 26062 G26062A,G26062T G A,T . . AC=1,4;AN=1125 +NC_045512v2 26063 G26063T G T . . AC=2;AN=1125 +NC_045512v2 26066 T26066C T C . . AC=2;AN=1125 +NC_045512v2 26070 A26070G A G . . AC=1;AN=1125 +NC_045512v2 26094 T26094C T C . . AC=2;AN=1125 +NC_045512v2 26097 A26097G A G . . AC=1;AN=1125 +NC_045512v2 26105 A26105G A G . . AC=1;AN=1125 +NC_045512v2 26110 C26110T C T . . AC=4;AN=1125 +NC_045512v2 26111 C26111T C T . . AC=1;AN=1125 +NC_045512v2 26113 G26113C G C . . AC=1;AN=1125 +NC_045512v2 26126 A26126T A T . . AC=1;AN=1125 +NC_045512v2 26139 C26139T C T . . AC=2;AN=1125 +NC_045512v2 26144 G26144A,G26144T G A,T . . AC=2,1;AN=1125 +NC_045512v2 26149 T26149C T C . . AC=3;AN=1125 +NC_045512v2 26151 C26151T C T . . AC=2;AN=1125 +NC_045512v2 26152 G26152T G T . . AC=2;AN=1125 +NC_045512v2 26153 G26153T G T . . AC=1;AN=1125 +NC_045512v2 26156 T26156C T C . . AC=1;AN=1125 +NC_045512v2 26160 T26160C T C . . AC=1;AN=1125 +NC_045512v2 26163 T26163C T C . . AC=1;AN=1125 +NC_045512v2 26165 C26165T C T . . AC=1;AN=1125 +NC_045512v2 26171 T26171A T A . . AC=2;AN=1125 +NC_045512v2 26172 G26172T G T . . AC=1;AN=1125 +NC_045512v2 26173 G26173T G T . . AC=1;AN=1125 +NC_045512v2 26174 A26174C A C . . AC=1;AN=1125 +NC_045512v2 26177 C26177T C T . . AC=2;AN=1125 +NC_045512v2 26195 C26195T C T . . AC=1;AN=1125 +NC_045512v2 26208 C26208T C T . . AC=2;AN=1125 +NC_045512v2 26217 G26217T G T . . AC=3;AN=1125 +NC_045512v2 26221 G26221A G A . . AC=2;AN=1125 +NC_045512v2 26230 G26230T G T . . AC=1;AN=1125 +NC_045512v2 26233 G26233T G T . . AC=2;AN=1125 +NC_045512v2 26256 C26256T C T . . AC=4;AN=1125 +NC_045512v2 26257 G26257A G A . . AC=1;AN=1125 +NC_045512v2 26260 T26260G T G . . AC=1;AN=1125 +NC_045512v2 26261 C26261T C T . . AC=1;AN=1125 +NC_045512v2 26262 G26262A G A . . AC=1;AN=1125 +NC_045512v2 26268 G26268T G T . . AC=1;AN=1125 +NC_045512v2 26270 C26270T C T . . AC=5;AN=1125 +NC_045512v2 26273 G26273T G T . . AC=1;AN=1125 +NC_045512v2 26305 C26305T C T . . AC=3;AN=1125 +NC_045512v2 26313 C26313T C T . . AC=2;AN=1125 +NC_045512v2 26319 A26319G A G . . AC=2;AN=1125 +NC_045512v2 26332 A26332G A G . . AC=4;AN=1125 +NC_045512v2 26333 C26333T C T . . AC=1;AN=1125 +NC_045512v2 26340 C26340T C T . . AC=1;AN=1125 +NC_045512v2 26370 C26370T C T . . AC=1;AN=1125 +NC_045512v2 26389 G26389T G T . . AC=1;AN=1125 +NC_045512v2 26395 C26395T C T . . AC=1;AN=1125 +NC_045512v2 26404 C26404T C T . . AC=1;AN=1125 +NC_045512v2 26408 C26408T C T . . AC=2;AN=1125 +NC_045512v2 26409 T26409C T C . . AC=1;AN=1125 +NC_045512v2 26415 C26415T C T . . AC=1;AN=1125 +NC_045512v2 26416 G26416T G T . . AC=3;AN=1125 +NC_045512v2 26424 T26424C T C . . AC=1;AN=1125 +NC_045512v2 26426 G26426A G A . . AC=1;AN=1125 +NC_045512v2 26447 C26447A,C26447T C A,T . . AC=1,2;AN=1125 +NC_045512v2 26450 G26450T G T . . AC=3;AN=1125 +NC_045512v2 26456 C26456T C T . . AC=4;AN=1125 +NC_045512v2 26458 G26458C G C . . AC=1;AN=1125 +NC_045512v2 26459 A26459G A G . . AC=1;AN=1125 +NC_045512v2 26461 C26461T C T . . AC=3;AN=1125 +NC_045512v2 26464 C26464T C T . . AC=2;AN=1125 +NC_045512v2 26469 C26469T C T . . AC=1;AN=1125 +NC_045512v2 26497 T26497C T C . . AC=2;AN=1125 +NC_045512v2 26510 T26510C T C . . AC=1;AN=1125 +NC_045512v2 26512 T26512C T C . . AC=2;AN=1125 +NC_045512v2 26513 A26513G A G . . AC=1;AN=1125 +NC_045512v2 26526 G26526T G T . . AC=1;AN=1125 +NC_045512v2 26527 C26527T C T . . AC=4;AN=1125 +NC_045512v2 26529 G26529T G T . . AC=1;AN=1125 +NC_045512v2 26530 A26530G A G . . AC=8;AN=1125 +NC_045512v2 26534 C26534T C T . . AC=2;AN=1125 +NC_045512v2 26543 T26543A T A . . AC=1;AN=1125 +NC_045512v2 26550 G26550A G A . . AC=1;AN=1125 +NC_045512v2 26571 C26571T C T . . AC=1;AN=1125 +NC_045512v2 26589 G26589C G C . . AC=1;AN=1125 +NC_045512v2 26594 A26594T A T . . AC=1;AN=1125 +NC_045512v2 26600 C26600T C T . . AC=2;AN=1125 +NC_045512v2 26604 T26604C T C . . AC=4;AN=1125 +NC_045512v2 26607 C26607T C T . . AC=1;AN=1125 +NC_045512v2 26615 G26615T G T . . AC=2;AN=1125 +NC_045512v2 26625 C26625T C T . . AC=5;AN=1125 +NC_045512v2 26640 G26640T G T . . AC=1;AN=1125 +NC_045512v2 26645 C26645T C T . . AC=6;AN=1125 +NC_045512v2 26648 G26648A G A . . AC=1;AN=1125 +NC_045512v2 26654 G26654T G T . . AC=1;AN=1125 +NC_045512v2 26664 A26664G A G . . AC=1;AN=1125 +NC_045512v2 26677 T26677C T C . . AC=3;AN=1125 +NC_045512v2 26681 C26681T C T . . AC=12;AN=1125 +NC_045512v2 26690 G26690T G T . . AC=1;AN=1125 +NC_045512v2 26730 G26730T G T . . AC=3;AN=1125 +NC_045512v2 26735 C26735T C T . . AC=61;AN=1125 +NC_045512v2 26754 G26754A G A . . AC=1;AN=1125 +NC_045512v2 26767 T26767C T C . . AC=4;AN=1125 +NC_045512v2 26768 C26768T C T . . AC=1;AN=1125 +NC_045512v2 26787 G26787A G A . . AC=1;AN=1125 +NC_045512v2 26801 C26801G,C26801T C G,T . . AC=51,8;AN=1125 +NC_045512v2 26822 C26822T C T . . AC=1;AN=1125 +NC_045512v2 26828 G26828A,G26828T G A,T . . AC=2,2;AN=1125 +NC_045512v2 26843 T26843C T C . . AC=1;AN=1125 +NC_045512v2 26849 G26849T G T . . AC=2;AN=1125 +NC_045512v2 26858 C26858T C T . . AC=1;AN=1125 +NC_045512v2 26864 A26864G,A26864T A G,T . . AC=1,1;AN=1125 +NC_045512v2 26876 T26876C T C . . AC=8;AN=1125 +NC_045512v2 26885 C26885T C T . . AC=4;AN=1125 +NC_045512v2 26894 C26894T C T . . AC=4;AN=1125 +NC_045512v2 26895 C26895T C T . . AC=1;AN=1125 +NC_045512v2 26903 T26903C T C . . AC=1;AN=1125 +NC_045512v2 26906 T26906C T C . . AC=2;AN=1125 +NC_045512v2 26912 C26912T C T . . AC=1;AN=1125 +NC_045512v2 26918 G26918T G T . . AC=6;AN=1125 +NC_045512v2 26927 A26927G A G . . AC=1;AN=1125 +NC_045512v2 26936 C26936T C T . . AC=1;AN=1125 +NC_045512v2 26937 G26937A G A . . AC=1;AN=1125 +NC_045512v2 26951 G26951A,G26951T G A,T . . AC=2,1;AN=1125 +NC_045512v2 26972 T26972C T C . . AC=15;AN=1125 +NC_045512v2 26984 C26984T C T . . AC=1;AN=1125 +NC_045512v2 26985 C26985T C T . . AC=2;AN=1125 +NC_045512v2 26986 A26986T A T . . AC=1;AN=1125 +NC_045512v2 27002 C27002T C T . . AC=2;AN=1125 +NC_045512v2 27005 C27005T C T . . AC=3;AN=1125 +NC_045512v2 27008 G27008T G T . . AC=1;AN=1125 +NC_045512v2 27014 G27014T G T . . AC=1;AN=1125 +NC_045512v2 27046 C27046T C T . . AC=2;AN=1125 +NC_045512v2 27047 G27047T G T . . AC=1;AN=1125 +NC_045512v2 27059 C27059T C T . . AC=3;AN=1125 +NC_045512v2 27084 G27084A,G27084T G A,T . . AC=2,1;AN=1125 +NC_045512v2 27086 A27086T A T . . AC=1;AN=1125 +NC_045512v2 27092 C27092T C T . . AC=2;AN=1125 +NC_045512v2 27107 A27107T A T . . AC=2;AN=1125 +NC_045512v2 27110 C27110T C T . . AC=1;AN=1125 +NC_045512v2 27119 C27119T C T . . AC=1;AN=1125 +NC_045512v2 27128 C27128T C T . . AC=3;AN=1125 +NC_045512v2 27137 A27137G A G . . AC=2;AN=1125 +NC_045512v2 27143 C27143T C T . . AC=1;AN=1125 +NC_045512v2 27147 G27147T G T . . AC=1;AN=1125 +NC_045512v2 27160 G27160T G T . . AC=1;AN=1125 +NC_045512v2 27165 G27165T G T . . AC=1;AN=1125 +NC_045512v2 27167 C27167T C T . . AC=1;AN=1125 +NC_045512v2 27207 T27207C T C . . AC=1;AN=1125 +NC_045512v2 27212 T27212C T C . . AC=2;AN=1125 +NC_045512v2 27213 C27213T C T . . AC=7;AN=1125 +NC_045512v2 27216 T27216A T A . . AC=1;AN=1125 +NC_045512v2 27224 A27224G A G . . AC=1;AN=1125 +NC_045512v2 27232 A27232G A G . . AC=1;AN=1125 +NC_045512v2 27237 A27237G A G . . AC=1;AN=1125 +NC_045512v2 27256 A27256G A G . . AC=1;AN=1125 +NC_045512v2 27263 C27263T C T . . AC=1;AN=1125 +NC_045512v2 27264 T27264G T G . . AC=2;AN=1125 +NC_045512v2 27277 A27277G A G . . AC=1;AN=1125 +NC_045512v2 27280 T27280C T C . . AC=1;AN=1125 +NC_045512v2 27281 G27281T G T . . AC=3;AN=1125 +NC_045512v2 27294 C27294T C T . . AC=2;AN=1125 +NC_045512v2 27297 C27297T C T . . AC=1;AN=1125 +NC_045512v2 27299 T27299C T C . . AC=10;AN=1125 +NC_045512v2 27303 C27303A C A . . AC=1;AN=1125 +NC_045512v2 27319 T27319C T C . . AC=2;AN=1125 +NC_045512v2 27327 G27327T G T . . AC=1;AN=1125 +NC_045512v2 27328 T27328C T C . . AC=1;AN=1125 +NC_045512v2 27346 T27346C T C . . AC=1;AN=1125 +NC_045512v2 27358 G27358T G T . . AC=1;AN=1125 +NC_045512v2 27371 C27371T C T . . AC=1;AN=1125 +NC_045512v2 27382 G27382C,G27382T G C,T . . AC=1,1;AN=1125 +NC_045512v2 27383 A27383T A T . . AC=1;AN=1125 +NC_045512v2 27384 T27384C T C . . AC=4;AN=1125 +NC_045512v2 27390 G27390C G C . . AC=1;AN=1125 +NC_045512v2 27393 C27393T C T . . AC=1;AN=1125 +NC_045512v2 27403 A27403T A T . . AC=2;AN=1125 +NC_045512v2 27415 G27415A G A . . AC=1;AN=1125 +NC_045512v2 27416 C27416T C T . . AC=1;AN=1125 +NC_045512v2 27418 C27418T C T . . AC=1;AN=1125 +NC_045512v2 27420 G27420A G A . . AC=1;AN=1125 +NC_045512v2 27429 C27429T C T . . AC=1;AN=1125 +NC_045512v2 27431 C27431T C T . . AC=2;AN=1125 +NC_045512v2 27434 C27434T C T . . AC=4;AN=1125 +NC_045512v2 27447 T27447C T C . . AC=2;AN=1125 +NC_045512v2 27459 G27459T G T . . AC=1;AN=1125 +NC_045512v2 27476 C27476T C T . . AC=1;AN=1125 +NC_045512v2 27478 G27478T G T . . AC=1;AN=1125 +NC_045512v2 27484 T27484C T C . . AC=4;AN=1125 +NC_045512v2 27489 A27489G A G . . AC=1;AN=1125 +NC_045512v2 27498 C27498T C T . . AC=1;AN=1125 +NC_045512v2 27499 T27499C T C . . AC=1;AN=1125 +NC_045512v2 27506 G27506T G T . . AC=2;AN=1125 +NC_045512v2 27509 C27509T C T . . AC=1;AN=1125 +NC_045512v2 27513 C27513T C T . . AC=1;AN=1125 +NC_045512v2 27516 G27516A G A . . AC=1;AN=1125 +NC_045512v2 27519 C27519A C A . . AC=1;AN=1125 +NC_045512v2 27527 C27527T C T . . AC=2;AN=1125 +NC_045512v2 27532 C27532T C T . . AC=4;AN=1125 +NC_045512v2 27539 T27539C T C . . AC=1;AN=1125 +NC_045512v2 27561 G27561T G T . . AC=2;AN=1125 +NC_045512v2 27576 T27576C,T27576G T C,G . . AC=3,2;AN=1125 +NC_045512v2 27577 C27577T C T . . AC=2;AN=1125 +NC_045512v2 27583 G27583T G T . . AC=2;AN=1125 +NC_045512v2 27589 G27589A G A . . AC=2;AN=1125 +NC_045512v2 27596 C27596T C T . . AC=1;AN=1125 +NC_045512v2 27598 G27598T G T . . AC=1;AN=1125 +NC_045512v2 27600 C27600T C T . . AC=1;AN=1125 +NC_045512v2 27603 C27603T C T . . AC=4;AN=1125 +NC_045512v2 27604 G27604A G A . . AC=1;AN=1125 +NC_045512v2 27610 C27610T C T . . AC=1;AN=1125 +NC_045512v2 27612 C27612T C T . . AC=1;AN=1125 +NC_045512v2 27622 T27622C T C . . AC=1;AN=1125 +NC_045512v2 27630 C27630T C T . . AC=1;AN=1125 +NC_045512v2 27632 G27632T G T . . AC=2;AN=1125 +NC_045512v2 27634 T27634C T C . . AC=3;AN=1125 +NC_045512v2 27637 G27637A G A . . AC=1;AN=1125 +NC_045512v2 27641 C27641T C T . . AC=2;AN=1125 +NC_045512v2 27644 C27644A C A . . AC=1;AN=1125 +NC_045512v2 27645 T27645A T A . . AC=2;AN=1125 +NC_045512v2 27651 G27651C G C . . AC=1;AN=1125 +NC_045512v2 27657 C27657T C T . . AC=1;AN=1125 +NC_045512v2 27666 G27666A,G27666T G A,T . . AC=2,1;AN=1125 +NC_045512v2 27669 A27669G A G . . AC=2;AN=1125 +NC_045512v2 27670 G27670T G T . . AC=1;AN=1125 +NC_045512v2 27672 T27672C T C . . AC=1;AN=1125 +NC_045512v2 27673 C27673T C T . . AC=3;AN=1125 +NC_045512v2 27674 A27674T A T . . AC=2;AN=1125 +NC_045512v2 27675 A27675C A C . . AC=1;AN=1125 +NC_045512v2 27679 C27679T C T . . AC=2;AN=1125 +NC_045512v2 27684 C27684T C T . . AC=2;AN=1125 +NC_045512v2 27685 T27685C T C . . AC=1;AN=1125 +NC_045512v2 27688 C27688T C T . . AC=1;AN=1125 +NC_045512v2 27691 A27691T A T . . AC=1;AN=1125 +NC_045512v2 27703 G27703T G T . . AC=5;AN=1125 +NC_045512v2 27708 G27708T G T . . AC=1;AN=1125 +NC_045512v2 27717 G27717A G A . . AC=1;AN=1125 +NC_045512v2 27741 C27741T C T . . AC=4;AN=1125 +NC_045512v2 27746 G27746T G T . . AC=1;AN=1125 +NC_045512v2 27752 C27752T C T . . AC=3;AN=1125 +NC_045512v2 27754 G27754T G T . . AC=1;AN=1125 +NC_045512v2 27755 A27755T A T . . AC=2;AN=1125 +NC_045512v2 27762 G27762C G C . . AC=1;AN=1125 +NC_045512v2 27769 C27769G,C27769T C G,T . . AC=1,2;AN=1125 +NC_045512v2 27778 A27778G A G . . AC=1;AN=1125 +NC_045512v2 27798 G27798T G T . . AC=1;AN=1125 +NC_045512v2 27800 C27800A C A . . AC=20;AN=1125 +NC_045512v2 27804 C27804T C T . . AC=3;AN=1125 +NC_045512v2 27806 G27806T G T . . AC=1;AN=1125 +NC_045512v2 27807 C27807G C G . . AC=1;AN=1125 +NC_045512v2 27808 T27808C T C . . AC=2;AN=1125 +NC_045512v2 27811 T27811C T C . . AC=2;AN=1125 +NC_045512v2 27821 A27821G A G . . AC=2;AN=1125 +NC_045512v2 27824 T27824C T C . . AC=1;AN=1125 +NC_045512v2 27827 G27827A,G27827T G A,T . . AC=1,1;AN=1125 +NC_045512v2 27834 A27834T A T . . AC=1;AN=1125 +NC_045512v2 27835 T27835C T C . . AC=1;AN=1125 +NC_045512v2 27842 G27842T G T . . AC=2;AN=1125 +NC_045512v2 27845 C27845T C T . . AC=1;AN=1125 +NC_045512v2 27846 T27846C T C . . AC=1;AN=1125 +NC_045512v2 27847 C27847T C T . . AC=3;AN=1125 +NC_045512v2 27849 C27849T C T . . AC=2;AN=1125 +NC_045512v2 27851 T27851C T C . . AC=2;AN=1125 +NC_045512v2 27852 G27852T G T . . AC=2;AN=1125 +NC_045512v2 27856 T27856C,T27856G T C,G . . AC=1,1;AN=1125 +NC_045512v2 27857 G27857T G T . . AC=1;AN=1125 +NC_045512v2 27865 A27865T A T . . AC=1;AN=1125 +NC_045512v2 27866 T27866A T A . . AC=1;AN=1125 +NC_045512v2 27869 T27869C T C . . AC=4;AN=1125 +NC_045512v2 27874 C27874T C T . . AC=1;AN=1125 +NC_045512v2 27877 G27877T G T . . AC=4;AN=1125 +NC_045512v2 27881 C27881T C T . . AC=4;AN=1125 +NC_045512v2 27882 G27882T G T . . AC=1;AN=1125 +NC_045512v2 27890 G27890T G T . . AC=3;AN=1125 +NC_045512v2 27900 T27900C T C . . AC=1;AN=1125 +NC_045512v2 27903 C27903T C T . . AC=1;AN=1125 +NC_045512v2 27906 G27906T G T . . AC=1;AN=1125 +NC_045512v2 27911 C27911T C T . . AC=2;AN=1125 +NC_045512v2 27915 G27915A G A . . AC=5;AN=1125 +NC_045512v2 27916 G27916T G T . . AC=1;AN=1125 +NC_045512v2 27919 T27919C T C . . AC=1;AN=1125 +NC_045512v2 27920 C27920T C T . . AC=5;AN=1125 +NC_045512v2 27923 C27923T C T . . AC=2;AN=1125 +NC_045512v2 27925 C27925A C A . . AC=1;AN=1125 +NC_045512v2 27932 A27932G A G . . AC=2;AN=1125 +NC_045512v2 27933 G27933A,G27933T G A,T . . AC=1,1;AN=1125 +NC_045512v2 27944 C27944T C T . . AC=26;AN=1125 +NC_045512v2 27945 C27945T C T . . AC=6;AN=1125 +NC_045512v2 27955 G27955A,G27955T G A,T . . AC=2,1;AN=1125 +NC_045512v2 27962 G27962T G T . . AC=1;AN=1125 +NC_045512v2 27964 C27964T C T . . AC=22;AN=1125 +NC_045512v2 27970 C27970A C A . . AC=2;AN=1125 +NC_045512v2 27972 C27972T C T . . AC=6;AN=1125 +NC_045512v2 27973 A27973G A G . . AC=1;AN=1125 +NC_045512v2 27979 A27979G,A27979T A G,T . . AC=1,1;AN=1125 +NC_045512v2 27987 G27987T G T . . AC=3;AN=1125 +NC_045512v2 27988 T27988C T C . . AC=1;AN=1125 +NC_045512v2 27989 A27989G A G . . AC=1;AN=1125 +NC_045512v2 27990 G27990A G A . . AC=1;AN=1125 +NC_045512v2 27996 G27996T G T . . AC=3;AN=1125 +NC_045512v2 27998 C27998T C T . . AC=2;AN=1125 +NC_045512v2 28001 G28001C,G28001T G C,T . . AC=1,2;AN=1125 +NC_045512v2 28003 G28003C,G28003T G C,T . . AC=4,1;AN=1125 +NC_045512v2 28005 C28005T C T . . AC=2;AN=1125 +NC_045512v2 28006 C28006T C T . . AC=1;AN=1125 +NC_045512v2 28009 T28009C T C . . AC=1;AN=1125 +NC_045512v2 28010 T28010A T A . . AC=1;AN=1125 +NC_045512v2 28026 T28026C T C . . AC=1;AN=1125 +NC_045512v2 28027 G28027T G T . . AC=3;AN=1125 +NC_045512v2 28044 G28044T G T . . AC=1;AN=1125 +NC_045512v2 28045 C28045T C T . . AC=6;AN=1125 +NC_045512v2 28048 G28048A,G28048T G A,T . . AC=1,5;AN=1125 +NC_045512v2 28056 G28056A G A . . AC=1;AN=1125 +NC_045512v2 28057 C28057T C T . . AC=1;AN=1125 +NC_045512v2 28065 A28065C A C . . AC=2;AN=1125 +NC_045512v2 28073 G28073T G T . . AC=1;AN=1125 +NC_045512v2 28077 G28077T G T . . AC=2;AN=1125 +NC_045512v2 28079 G28079A,G28079T G A,T . . AC=1,3;AN=1125 +NC_045512v2 28081 A28081T A T . . AC=1;AN=1125 +NC_045512v2 28083 G28083T G T . . AC=6;AN=1125 +NC_045512v2 28085 G28085T G T . . AC=1;AN=1125 +NC_045512v2 28086 G28086T G T . . AC=5;AN=1125 +NC_045512v2 28087 C28087T C T . . AC=8;AN=1125 +NC_045512v2 28093 C28093T C T . . AC=4;AN=1125 +NC_045512v2 28098 T28098C T C . . AC=2;AN=1125 +NC_045512v2 28099 C28099T C T . . AC=4;AN=1125 +NC_045512v2 28109 G28109T G T . . AC=1;AN=1125 +NC_045512v2 28110 T28110C T C . . AC=2;AN=1125 +NC_045512v2 28111 A28111G A G . . AC=4;AN=1125 +NC_045512v2 28115 C28115T C T . . AC=1;AN=1125 +NC_045512v2 28117 A28117T A T . . AC=2;AN=1125 +NC_045512v2 28118 T28118C T C . . AC=1;AN=1125 +NC_045512v2 28120 T28120C T C . . AC=1;AN=1125 +NC_045512v2 28121 C28121T C T . . AC=1;AN=1125 +NC_045512v2 28123 G28123T G T . . AC=1;AN=1125 +NC_045512v2 28124 T28124C T C . . AC=1;AN=1125 +NC_045512v2 28127 T28127C T C . . AC=1;AN=1125 +NC_045512v2 28133 A28133T A T . . AC=2;AN=1125 +NC_045512v2 28153 C28153T C T . . AC=2;AN=1125 +NC_045512v2 28165 A28165G A G . . AC=1;AN=1125 +NC_045512v2 28166 G28166A G A . . AC=1;AN=1125 +NC_045512v2 28167 G28167A G A . . AC=2;AN=1125 +NC_045512v2 28169 A28169G A G . . AC=2;AN=1125 +NC_045512v2 28178 G28178T G T . . AC=2;AN=1125 +NC_045512v2 28196 T28196C T C . . AC=1;AN=1125 +NC_045512v2 28198 G28198T G T . . AC=1;AN=1125 +NC_045512v2 28201 C28201T C T . . AC=1;AN=1125 +NC_045512v2 28202 G28202A G A . . AC=3;AN=1125 +NC_045512v2 28209 G28209T G T . . AC=2;AN=1125 +NC_045512v2 28214 C28214A C A . . AC=1;AN=1125 +NC_045512v2 28221 G28221T G T . . AC=2;AN=1125 +NC_045512v2 28230 G28230T G T . . AC=1;AN=1125 +NC_045512v2 28245 T28245C T C . . AC=1;AN=1125 +NC_045512v2 28250 T28250G T G . . AC=1;AN=1125 +NC_045512v2 28251 T28251G T G . . AC=1;AN=1125 +NC_045512v2 28254 A28254C,A28254G A C,G . . AC=1,1;AN=1125 +NC_045512v2 28256 C28256T C T . . AC=2;AN=1125 +NC_045512v2 28269 C28269T C T . . AC=2;AN=1125 +NC_045512v2 28271 A28271G A G . . AC=1;AN=1125 +NC_045512v2 28272 A28272T A T . . AC=6;AN=1125 +NC_045512v2 28273 A28273T A T . . AC=2;AN=1125 +NC_045512v2 28274 A28274G A G . . AC=2;AN=1125 +NC_045512v2 28276 G28276C G C . . AC=2;AN=1125 +NC_045512v2 28277 T28277C T C . . AC=1;AN=1125 +NC_045512v2 28280 G28280A,G28280C,G28280T G A,C,T . . AC=2,4,1;AN=1125 +NC_045512v2 28281 A28281T A T . . AC=4;AN=1125 +NC_045512v2 28282 T28282A T A . . AC=4;AN=1125 +NC_045512v2 28290 C28290T C T . . AC=1;AN=1125 +NC_045512v2 28292 C28292A C A . . AC=2;AN=1125 +NC_045512v2 28297 T28297C T C . . AC=1;AN=1125 +NC_045512v2 28300 G28300T G T . . AC=1;AN=1125 +NC_045512v2 28304 A28304T A T . . AC=1;AN=1125 +NC_045512v2 28307 G28307A,G28307C,G28307T G A,C,T . . AC=1,1,1;AN=1125 +NC_045512v2 28308 C28308G C G . . AC=2;AN=1125 +NC_045512v2 28310 C28310A,C28310T C A,T . . AC=3,5;AN=1125 +NC_045512v2 28311 C28311T C T . . AC=3;AN=1125 +NC_045512v2 28312 C28312T C T . . AC=2;AN=1125 +NC_045512v2 28315 C28315T C T . . AC=2;AN=1125 +NC_045512v2 28320 C28320T C T . . AC=2;AN=1125 +NC_045512v2 28321 G28321A,G28321T G A,T . . AC=2,4;AN=1125 +NC_045512v2 28325 G28325A,G28325T G A,T . . AC=1,2;AN=1125 +NC_045512v2 28336 A28336G A G . . AC=1;AN=1125 +NC_045512v2 28337 G28337A G A . . AC=1;AN=1125 +NC_045512v2 28338 A28338G A G . . AC=2;AN=1125 +NC_045512v2 28340 T28340C T C . . AC=1;AN=1125 +NC_045512v2 28344 C28344T C T . . AC=2;AN=1125 +NC_045512v2 28346 G28346T G T . . AC=1;AN=1125 +NC_045512v2 28348 C28348T C T . . AC=1;AN=1125 +NC_045512v2 28356 A28356G A G . . AC=2;AN=1125 +NC_045512v2 28360 T28360C T C . . AC=1;AN=1125 +NC_045512v2 28362 G28362C G C . . AC=1;AN=1125 +NC_045512v2 28367 C28367T C T . . AC=2;AN=1125 +NC_045512v2 28371 G28371T G T . . AC=2;AN=1125 +NC_045512v2 28373 G28373T G T . . AC=1;AN=1125 +NC_045512v2 28374 G28374T G T . . AC=1;AN=1125 +NC_045512v2 28375 G28375T G T . . AC=3;AN=1125 +NC_045512v2 28376 G28376T G T . . AC=2;AN=1125 +NC_045512v2 28378 G28378T G T . . AC=6;AN=1125 +NC_045512v2 28380 G28380A G A . . AC=2;AN=1125 +NC_045512v2 28389 A28389T A T . . AC=2;AN=1125 +NC_045512v2 28396 G28396A G A . . AC=2;AN=1125 +NC_045512v2 28411 C28411T C T . . AC=1;AN=1125 +NC_045512v2 28432 C28432T C T . . AC=1;AN=1125 +NC_045512v2 28436 G28436T G T . . AC=2;AN=1125 +NC_045512v2 28451 G28451C G C . . AC=1;AN=1125 +NC_045512v2 28453 C28453T C T . . AC=6;AN=1125 +NC_045512v2 28472 C28472T C T . . AC=3;AN=1125 +NC_045512v2 28476 G28476T G T . . AC=1;AN=1125 +NC_045512v2 28483 A28483G A G . . AC=1;AN=1125 +NC_045512v2 28487 G28487A G A . . AC=2;AN=1125 +NC_045512v2 28494 T28494C T C . . AC=1;AN=1125 +NC_045512v2 28500 C28500T C T . . AC=2;AN=1125 +NC_045512v2 28512 C28512G,C28512T C G,T . . AC=2,1;AN=1125 +NC_045512v2 28514 G28514T G T . . AC=2;AN=1125 +NC_045512v2 28541 G28541T G T . . AC=1;AN=1125 +NC_045512v2 28546 C28546A C A . . AC=1;AN=1125 +NC_045512v2 28557 G28557T G T . . AC=1;AN=1125 +NC_045512v2 28603 C28603T C T . . AC=5;AN=1125 +NC_045512v2 28609 C28609T C T . . AC=2;AN=1125 +NC_045512v2 28612 A28612G A G . . AC=1;AN=1125 +NC_045512v2 28621 G28621A G A . . AC=2;AN=1125 +NC_045512v2 28624 A28624T A T . . AC=1;AN=1125 +NC_045512v2 28628 G28628T G T . . AC=6;AN=1125 +NC_045512v2 28629 C28629T C T . . AC=1;AN=1125 +NC_045512v2 28630 T28630G T G . . AC=1;AN=1125 +NC_045512v2 28638 C28638A C A . . AC=2;AN=1125 +NC_045512v2 28651 C28651T C T . . AC=7;AN=1125 +NC_045512v2 28655 G28655A,G28655T G A,T . . AC=2,1;AN=1125 +NC_045512v2 28657 C28657T C T . . AC=5;AN=1125 +NC_045512v2 28674 C28674T C T . . AC=2;AN=1125 +NC_045512v2 28681 G28681A G A . . AC=1;AN=1125 +NC_045512v2 28690 G28690T G T . . AC=5;AN=1125 +NC_045512v2 28697 C28697T C T . . AC=2;AN=1125 +NC_045512v2 28699 A28699G A G . . AC=2;AN=1125 +NC_045512v2 28703 G28703C,G28703T G C,T . . AC=1,1;AN=1125 +NC_045512v2 28707 A28707T A T . . AC=1;AN=1125 +NC_045512v2 28708 C28708T C T . . AC=3;AN=1125 +NC_045512v2 28715 A28715T A T . . AC=2;AN=1125 +NC_045512v2 28720 C28720T C T . . AC=1;AN=1125 +NC_045512v2 28723 T28723C T C . . AC=1;AN=1125 +NC_045512v2 28724 C28724T C T . . AC=1;AN=1125 +NC_045512v2 28725 C28725T C T . . AC=2;AN=1125 +NC_045512v2 28727 G28727T G T . . AC=2;AN=1125 +NC_045512v2 28732 C28732T C T . . AC=1;AN=1125 +NC_045512v2 28744 C28744T C T . . AC=3;AN=1125 +NC_045512v2 28745 G28745A G A . . AC=1;AN=1125 +NC_045512v2 28754 C28754T C T . . AC=1;AN=1125 +NC_045512v2 28759 T28759C T C . . AC=2;AN=1125 +NC_045512v2 28760 C28760A C A . . AC=2;AN=1125 +NC_045512v2 28765 A28765T A T . . AC=1;AN=1125 +NC_045512v2 28770 C28770T C T . . AC=2;AN=1125 +NC_045512v2 28775 C28775T C T . . AC=1;AN=1125 +NC_045512v2 28808 G28808T G T . . AC=2;AN=1125 +NC_045512v2 28812 G28812T G T . . AC=1;AN=1125 +NC_045512v2 28813 T28813G T G . . AC=1;AN=1125 +NC_045512v2 28817 G28817T G T . . AC=2;AN=1125 +NC_045512v2 28819 C28819T C T . . AC=1;AN=1125 +NC_045512v2 28821 C28821A C A . . AC=4;AN=1125 +NC_045512v2 28824 C28824T C T . . AC=1;AN=1125 +NC_045512v2 28826 C28826T C T . . AC=1;AN=1125 +NC_045512v2 28830 C28830A C A . . AC=2;AN=1125 +NC_045512v2 28833 C28833T C T . . AC=10;AN=1125 +NC_045512v2 28836 C28836T C T . . AC=2;AN=1125 +NC_045512v2 28841 A28841G A G . . AC=2;AN=1125 +NC_045512v2 28842 G28842T G T . . AC=2;AN=1125 +NC_045512v2 28844 C28844T C T . . AC=1;AN=1125 +NC_045512v2 28845 G28845T G T . . AC=2;AN=1125 +NC_045512v2 28846 C28846T C T . . AC=2;AN=1125 +NC_045512v2 28847 A28847T A T . . AC=1;AN=1125 +NC_045512v2 28849 C28849T C T . . AC=1;AN=1125 +NC_045512v2 28851 G28851C,G28851T G C,T . . AC=2,8;AN=1125 +NC_045512v2 28853 T28853G T G . . AC=2;AN=1125 +NC_045512v2 28854 C28854T C T . . AC=95;AN=1125 +NC_045512v2 28857 G28857T G T . . AC=3;AN=1125 +NC_045512v2 28860 A28860G A G . . AC=1;AN=1125 +NC_045512v2 28863 C28863T C T . . AC=2;AN=1125 +NC_045512v2 28866 C28866T C T . . AC=2;AN=1125 +NC_045512v2 28868 C28868T C T . . AC=3;AN=1125 +NC_045512v2 28869 C28869T C T . . AC=11;AN=1125 +NC_045512v2 28875 G28875T G T . . AC=2;AN=1125 +NC_045512v2 28877 A28877G,A28877T A G,T . . AC=1,4;AN=1125 +NC_045512v2 28878 G28878C,G28878T G C,T . . AC=4,1;AN=1125 +NC_045512v2 28880 A28880G A G . . AC=2;AN=1125 +NC_045512v2 28881 G28881A G A . . AC=427;AN=1125 +NC_045512v2 28882 G28882A,G28882T G A,T . . AC=425,1;AN=1125 +NC_045512v2 28883 G28883C G C . . AC=425;AN=1125 +NC_045512v2 28884 G28884T G T . . AC=5;AN=1125 +NC_045512v2 28887 C28887T C T . . AC=36;AN=1125 +NC_045512v2 28890 C28890T C T . . AC=4;AN=1125 +NC_045512v2 28892 C28892T C T . . AC=3;AN=1125 +NC_045512v2 28893 C28893T C T . . AC=2;AN=1125 +NC_045512v2 28896 C28896T C T . . AC=1;AN=1125 +NC_045512v2 28897 T28897C T C . . AC=1;AN=1125 +NC_045512v2 28899 G28899A,G28899C,G28899T G A,C,T . . AC=1,2,10;AN=1125 +NC_045512v2 28900 A28900C A C . . AC=2;AN=1125 +NC_045512v2 28901 A28901G A G . . AC=1;AN=1125 +NC_045512v2 28903 G28903C,G28903T G C,T . . AC=1,4;AN=1125 +NC_045512v2 28905 C28905T C T . . AC=2;AN=1125 +NC_045512v2 28907 G28907A,G28907T G A,T . . AC=1,2;AN=1125 +NC_045512v2 28911 A28911T A T . . AC=2;AN=1125 +NC_045512v2 28913 G28913T G T . . AC=1;AN=1125 +NC_045512v2 28914 G28914T G T . . AC=3;AN=1125 +NC_045512v2 28916 G28916A G A . . AC=1;AN=1125 +NC_045512v2 28917 G28917T G T . . AC=1;AN=1125 +NC_045512v2 28932 C28932T C T . . AC=55;AN=1125 +NC_045512v2 28936 G28936A,G28936T G A,T . . AC=1,1;AN=1125 +NC_045512v2 28939 G28939T G T . . AC=1;AN=1125 +NC_045512v2 28940 C28940T C T . . AC=1;AN=1125 +NC_045512v2 28959 A28959G A G . . AC=3;AN=1125 +NC_045512v2 28960 G28960T G T . . AC=3;AN=1125 +NC_045512v2 28968 G28968T G T . . AC=1;AN=1125 +NC_045512v2 28969 C28969T C T . . AC=2;AN=1125 +NC_045512v2 28975 G28975C,G28975T G C,T . . AC=5,16;AN=1125 +NC_045512v2 28977 C28977T C T . . AC=4;AN=1125 +NC_045512v2 29010 T29010C T C . . AC=1;AN=1125 +NC_045512v2 29013 C29013T C T . . AC=3;AN=1125 +NC_045512v2 29024 G29024T G T . . AC=1;AN=1125 +NC_045512v2 29031 A29031T A T . . AC=1;AN=1125 +NC_045512v2 29044 G29044A G A . . AC=2;AN=1125 +NC_045512v2 29059 T29059C T C . . AC=1;AN=1125 +NC_045512v2 29072 G29072T G T . . AC=1;AN=1125 +NC_045512v2 29077 C29077T C T . . AC=2;AN=1125 +NC_045512v2 29085 C29085T C T . . AC=2;AN=1125 +NC_045512v2 29086 A29086T A T . . AC=1;AN=1125 +NC_045512v2 29095 C29095T C T . . AC=7;AN=1125 +NC_045512v2 29101 A29101G A G . . AC=1;AN=1125 +NC_045512v2 29115 A29115T A T . . AC=1;AN=1125 +NC_045512v2 29119 C29119T C T . . AC=2;AN=1125 +NC_045512v2 29128 T29128C T C . . AC=1;AN=1125 +NC_045512v2 29140 G29140A G A . . AC=1;AN=1125 +NC_045512v2 29143 A29143G A G . . AC=2;AN=1125 +NC_045512v2 29144 C29144T C T . . AC=2;AN=1125 +NC_045512v2 29148 T29148C T C . . AC=10;AN=1125 +NC_045512v2 29149 C29149T C T . . AC=3;AN=1125 +NC_045512v2 29171 C29171T C T . . AC=3;AN=1125 +NC_045512v2 29179 G29179T G T . . AC=6;AN=1125 +NC_045512v2 29185 T29185A T A . . AC=2;AN=1125 +NC_045512v2 29194 T29194C T C . . AC=1;AN=1125 +NC_045512v2 29195 G29195T G T . . AC=1;AN=1125 +NC_045512v2 29200 C29200T C T . . AC=5;AN=1125 +NC_045512v2 29203 C29203T C T . . AC=1;AN=1125 +NC_045512v2 29212 G29212A G A . . AC=1;AN=1125 +NC_045512v2 29227 G29227A,G29227T G A,T . . AC=4,3;AN=1125 +NC_045512v2 29239 G29239A G A . . AC=2;AN=1125 +NC_045512v2 29242 A29242G A G . . AC=1;AN=1125 +NC_045512v2 29247 C29247T C T . . AC=1;AN=1125 +NC_045512v2 29249 C29249T C T . . AC=1;AN=1125 +NC_045512v2 29253 C29253T C T . . AC=1;AN=1125 +NC_045512v2 29254 G29254A,G29254T G A,T . . AC=2,4;AN=1125 +NC_045512v2 29259 C29259T C T . . AC=1;AN=1125 +NC_045512v2 29260 G29260T G T . . AC=3;AN=1125 +NC_045512v2 29272 C29272T C T . . AC=3;AN=1125 +NC_045512v2 29274 C29274T C T . . AC=5;AN=1125 +NC_045512v2 29284 C29284T C T . . AC=3;AN=1125 +NC_045512v2 29290 G29290A G A . . AC=1;AN=1125 +NC_045512v2 29291 G29291A G A . . AC=2;AN=1125 +NC_045512v2 29296 C29296T C T . . AC=4;AN=1125 +NC_045512v2 29311 C29311T C T . . AC=2;AN=1125 +NC_045512v2 29315 G29315T G T . . AC=1;AN=1125 +NC_045512v2 29332 G29332T G T . . AC=1;AN=1125 +NC_045512v2 29350 A29350G A G . . AC=2;AN=1125 +NC_045512v2 29353 C29353T C T . . AC=5;AN=1125 +NC_045512v2 29358 C29358T C T . . AC=2;AN=1125 +NC_045512v2 29362 C29362T C T . . AC=4;AN=1125 +NC_045512v2 29363 C29363T C T . . AC=1;AN=1125 +NC_045512v2 29366 C29366T C T . . AC=3;AN=1125 +NC_045512v2 29367 C29367T C T . . AC=1;AN=1125 +NC_045512v2 29370 C29370G,C29370T C G,T . . AC=3,2;AN=1125 +NC_045512v2 29376 C29376T C T . . AC=1;AN=1125 +NC_045512v2 29384 G29384T G T . . AC=1;AN=1125 +NC_045512v2 29391 A29391G A G . . AC=2;AN=1125 +NC_045512v2 29392 G29392T G T . . AC=1;AN=1125 +NC_045512v2 29395 G29395A G A . . AC=2;AN=1125 +NC_045512v2 29399 G29399A G A . . AC=5;AN=1125 +NC_045512v2 29402 G29402T G T . . AC=8;AN=1125 +NC_045512v2 29421 C29421T C T . . AC=3;AN=1125 +NC_045512v2 29422 G29422A,G29422T G A,T . . AC=1,8;AN=1125 +NC_045512v2 29424 A29424T A T . . AC=1;AN=1125 +NC_045512v2 29427 G29427T G T . . AC=1;AN=1125 +NC_045512v2 29431 G29431T G T . . AC=1;AN=1125 +NC_045512v2 29434 G29434C G C . . AC=2;AN=1125 +NC_045512v2 29445 C29445T C T . . AC=3;AN=1125 +NC_045512v2 29449 G29449A,G29449T G A,T . . AC=1,3;AN=1125 +NC_045512v2 29451 C29451T C T . . AC=2;AN=1125 +NC_045512v2 29462 G29462C G C . . AC=1;AN=1125 +NC_045512v2 29464 T29464C T C . . AC=5;AN=1125 +NC_045512v2 29466 C29466T C T . . AC=2;AN=1125 +NC_045512v2 29468 G29468C G C . . AC=1;AN=1125 +NC_045512v2 29474 G29474T G T . . AC=7;AN=1125 +NC_045512v2 29503 C29503T C T . . AC=1;AN=1125 +NC_045512v2 29508 G29508A G A . . AC=2;AN=1125 +NC_045512v2 29509 C29509T C T . . AC=1;AN=1125 +NC_045512v2 29511 G29511T G T . . AC=2;AN=1125 +NC_045512v2 29517 A29517G A G . . AC=1;AN=1125 +NC_045512v2 29521 A29521T A T . . AC=3;AN=1125 +NC_045512v2 29527 G29527T G T . . AC=4;AN=1125 +NC_045512v2 29529 C29529T C T . . AC=1;AN=1125 +NC_045512v2 29535 C29535T C T . . AC=1;AN=1125 +NC_045512v2 29540 G29540A G A . . AC=19;AN=1125 +NC_045512v2 29541 C29541T C T . . AC=4;AN=1125 +NC_045512v2 29543 G29543T G T . . AC=4;AN=1125 +NC_045512v2 29546 C29546T C T . . AC=1;AN=1125 +NC_045512v2 29555 C29555T C T . . AC=5;AN=1125 +NC_045512v2 29567 A29567G A G . . AC=2;AN=1125 +NC_045512v2 29571 A29571T A T . . AC=1;AN=1125 +NC_045512v2 29572 C29572T C T . . AC=1;AN=1125 +NC_045512v2 29573 G29573A G A . . AC=1;AN=1125 +NC_045512v2 29580 C29580T C T . . AC=1;AN=1125 +NC_045512v2 29585 C29585T C T . . AC=1;AN=1125 +NC_045512v2 29604 T29604C T C . . AC=1;AN=1125 +NC_045512v2 29614 C29614T C T . . AC=9;AN=1125 +NC_045512v2 29622 A29622C A C . . AC=1;AN=1125 +NC_045512v2 29625 C29625T C T . . AC=3;AN=1125 +NC_045512v2 29628 G29628T G T . . AC=6;AN=1125 +NC_045512v2 29642 C29642T C T . . AC=3;AN=1125 +NC_045512v2 29645 G29645T G T . . AC=57;AN=1125 +NC_045512v2 29648 G29648T G T . . AC=1;AN=1125 +NC_045512v2 29661 T29661C T C . . AC=2;AN=1125 +NC_045512v2 29668 C29668T C T . . AC=2;AN=1125 +NC_045512v2 29675 C29675T C T . . AC=1;AN=1125 +NC_045512v2 29679 C29679T C T . . AC=1;AN=1125 +NC_045512v2 29685 T29685G T G . . AC=1;AN=1125 +NC_045512v2 29686 C29686T C T . . AC=4;AN=1125 +NC_045512v2 29688 G29688A,G29688T G A,T . . AC=1,3;AN=1125 +NC_045512v2 29690 G29690T G T . . AC=2;AN=1125 +NC_045512v2 29692 G29692T G T . . AC=4;AN=1125 +NC_045512v2 29700 A29700G A G . . AC=1;AN=1125 +NC_045512v2 29705 G29705T G T . . AC=7;AN=1125 +NC_045512v2 29706 G29706T G T . . AC=2;AN=1125 +NC_045512v2 29708 C29708T C T . . AC=2;AN=1125 +NC_045512v2 29719 C29719T C T . . AC=2;AN=1125 +NC_045512v2 29722 C29722T C T . . AC=2;AN=1125 +NC_045512v2 29730 C29730G C G . . AC=1;AN=1125 +NC_045512v2 29733 C29733T C T . . AC=3;AN=1125 +NC_045512v2 29734 G29734C G C . . AC=29;AN=1125 +NC_045512v2 29736 G29736A,G29736T G A,T . . AC=1,2;AN=1125 +NC_045512v2 29738 C29738T C T . . AC=3;AN=1125 +NC_045512v2 29739 C29739T C T . . AC=4;AN=1125 +NC_045512v2 29741 C29741T C T . . AC=1;AN=1125 +NC_045512v2 29742 G29742T G T . . AC=5;AN=1125 +NC_045512v2 29743 C29743T C T . . AC=2;AN=1125 +NC_045512v2 29744 G29744A G A . . AC=1;AN=1125 +NC_045512v2 29745 G29745A,G29745T G A,T . . AC=1,5;AN=1125 +NC_045512v2 29747 G29747T G T . . AC=6;AN=1125 +NC_045512v2 29750 C29750T C T . . AC=8;AN=1125 +NC_045512v2 29751 G29751C,G29751T G C,T . . AC=2,5;AN=1125 +NC_045512v2 29752 A29752T A T . . AC=1;AN=1125 +NC_045512v2 29754 C29754T C T . . AC=2;AN=1125 +NC_045512v2 29755 G29755T G T . . AC=4;AN=1125 +NC_045512v2 29757 G29757T G T . . AC=2;AN=1125 +NC_045512v2 29759 G29759T G T . . AC=1;AN=1125 +NC_045512v2 29762 C29762G,C29762T C G,T . . AC=1,2;AN=1125 +NC_045512v2 29764 G29764A,G29764T G A,T . . AC=1,2;AN=1125 +NC_045512v2 29767 A29767C A C . . AC=1;AN=1125 +NC_045512v2 29769 C29769T C T . . AC=3;AN=1125 +NC_045512v2 29771 A29771G A G . . AC=2;AN=1125 +NC_045512v2 29773 G29773T G T . . AC=3;AN=1125 +NC_045512v2 29774 C29774T C T . . AC=2;AN=1125 +NC_045512v2 29777 G29777T G T . . AC=2;AN=1125 +NC_045512v2 29778 G29778T G T . . AC=1;AN=1125 +NC_045512v2 29779 G29779A,G29779C,G29779T G A,C,T . . AC=1,1,6;AN=1125 +NC_045512v2 29784 C29784T C T . . AC=4;AN=1125 +NC_045512v2 29785 T29785A T A . . AC=1;AN=1125 +NC_045512v2 29797 A29797G A G . . AC=1;AN=1125
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_15_tree.nh Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +((France/40002VJ/2020|MT470179.1|20-03:3,(Wales/PHWC-310CA/2020|20-04-11:4,((England/BRIS-123965/2020|20-04-07:2,England/BRIS-125347/2020|20-03-27:0)29:2,(IND/Isolate_9088/2020|MW555597.1|20-06-30:2,IND/763/2020|MT577009.1|20:0)30:1,((England/CAMB-76515/2020|20-03-29:1,England/CAMB-1AE294/2020|20-04-27:3)32:1,(England/LEED-2A8D10/2020|20-03-31:1,England/CAMB-1AC6F4/2020|20-04-21:3)33:1,(((Scotland/EDB2049/2020|20-04-18:1,Scotland/EDB2100/2020|20-04-19:0)36:2,England/CAMB-1AC7D3/2020|20-04-22:1)35:2,England/CAMB-7EBDF/2020|20-04-07:2,(England/MILK-BB0F16/2020|20-11-17:2,England/CAMC-BBDD4C/2020|20-11-22:5)37:7)34:1,(Scotland/CVR2381/2020|20-04-13:1,Scotland/CVR2197/2020|20-04-11:1)38:5,(Scotland/CVR3417/2020|20-05-07:3,Scotland/CVR1519/2020|20-04-03:1)39:1,(England/MILK-93B73B/2020|20-06-21:3,England/MILK-9589F6/2020|20-06-15:2)40:1,(England/BRIS-128441/2020|20-04-16:2,England/CAMB-7C39D/2020|20-04-13:3)41:1,(England/NORW-E8C37/2020|20-04-13:1,England/NORW-E75A6/2020|20-05-04:3)42:2,(Wales/PHWC-3122E/2020|20-04-10:1,Wales/PHWC-1645EC/2020|20-05-10:1)43:2,(England/ALDP-50085E/2020|20-06-27:5,England/PHEC-127E8/2020|20-03-28:0)44:1)31:1,(England/CAMB-75BD8/2020|20-03-29:1,UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01:5)45:1,(England/ALDP-9ED9F6/2020|20-05-05:4,England/ALDP-944BD9/2020|20-06-07:2)46:2,(USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29:1,USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29:1)47:2,(USA/WA-S3017/2020|MW474188.1|20-08-15:3,USA/WA-S2852/2020|MW079820.1|20-09-01:2)48:8,(USA/WI-UW-26/2020|MT706147.1|20-03-24:1,USA/IL-QDX-2568/2020|MW191367.1|20-03-14:1)49:1,(USA/ID-QDX-1727/2020|MW190466.1|20-03-17:3,USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30:2)50:1,(USA/IN-QDX-184/2020|MT786818.1|20-04-28:2,USA/WI-UW-558/2020|MT750137.1|20-06-25:0)51:1,(AUS/VIC2260/2020|MT972173.1|20-06-22:4,England/EXET-1358BE/2020|20-04-15:2)52:1,(((USA/FL-BPHL-0553/2020|MT834693.1|20-06-30:5,(USA/FL-BPHL-0540/2020|MT834625.1|20-03-21:2,(USA/COVID20-0537/2020|MT981422.1|20-06-04:1,USA/COVID20-1129/2020|MW067826.1|20-07-10:1)57:1)56:1)55:1,(CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02:2,(CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18:1,USA/WI-UW-269/2020|MT429191.1|20-04-06:2)59:2)58:1,(England/LEED-2A91D7/2020|20-04-06:3,England/LEED-2A87C7/2020|20-04-03:1)60:1)54:1,EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02:1,((USA/CA-CZB-1434/2020|MT628140.1|20-03-25:0,USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09:1)62:1,(USA/VA-DCLS-0676/2020|MT911804.1|20-04:0,USA/MI-QDX-476/2020|MW064508.1|20-03-23:0)63:1,(USA/WA-UW-4105/2020|MT358746.1|20-03-31:2,USA/WA-UW-2220/2020|MT345839.1|20-03-23:3)64:3,(USA/FL-BPHL-1565/2020|MW056116.1|20-09-10:7,USA/FL-BPHL-0510/2020|MT834668.1|20-06-10:4)65:1,(USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29:2,USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29:1)66:1,(England/CAMB-7A7DF/2020|20-04-02:1,Netherlands/NA_18/2020|LR878352.1|20-03-09:1)67:3,(USA/VA-DCLS-1557/2020|MW208010.1|20-08:1,USA/FL-BPHL-1018/2020|MT966219.1|20-07-17:1)68:2,(USA/CA-CZB-11119/2020|MW276517.1|20-05-29:3,USA/CA-CZB-11132/2020|MW276510.1|20-05-23:2)69:1,((Wales/PHWC-340A9/2020|20-04-20:4,Wales/PHWC-1667A8/2020|20-05-26:7)71:3,(England/CAMB-83FBD/2020|20-04-22:0,England/CAMB-1AD004/2020|20-04-30:1)72:3)70:1,((USA/FL-BPHL-1022/2020|MT966234.1|20-07-20:4,USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26:9)74:2,(England/PHEC-14F5D8/2020|20-12-29:9,((Scotland/EDB11343/2020|20-12-26:3,Scotland/EDB11342/2020|20-12-26:2)77:3,England/QEUH-CAF17D/2020|20-12-15:2)76:1)75:10)73:1,(England/LIVE-DAB556/2020|20-10-18:7,England/PHEC-14DE93/2020|20-11-11:5)78:7,(Wales/PHWC-1658A6/2020|20-05-19:3,Wales/PHWC-2E0A2/2020|20-04-10:1)79:2,(England/ALDP-952A53/2020|20-06-13:3,England/ALDP-95A745/2020|20-06-13:3)80:3,(Scotland/EDB3137/2020|20-04-06:2,Scotland/EDB2810/2020|20-03-30:2)81:2,(USA/CA-QDX-434/2020|MW064457.1|20-03-20:2,USA/UT-02231/2020|MT444626.1|20-04-15:5)82:2,(USA/WA-S2850/2020|MW079819.1|20-09-01:4,USA/WA-S2746/2020|MT947577.1|20-07-19:0)83:7,(USA/WI-UW-879/2020|MT846567.1|20-07-14:3,USA/UT-05590/2020|MW084605.1|20-06-01:1)84:3,(Netherlands/NA_588/2020|LR883860.1|20:1,Netherlands/NA_583/2020|LR883819.1|20:3)85:3,((USA/WA-S2992/2020|MW474166.1|20-08-12:9,USA/CA-CZB-5698/2020|MW276260.1|20-07-23:5)87:4,(USA/GA-CDC-4459/2020|MW130876.1|20-09-11:10,USA/NY-QDX-1993/2020|MW190794.1|20-03-18:0)88:1,(USA/FL-BPHL-0321/2020|MT757040.1|20-04-16:1,USA/FL-BPHL-1841/2020|MW206510.1|20-04-08:1)89:1,(USA/MN-MDH-1583/2020|MT997701.1|20-05-28:1,USA/MN-MDH-1585/2020|MT997703.1|20-05-22:1)90:6,((USA/COVID20-0777/2020|MW002812.1|20-06-26:3,USA/VA-DCLS-1147/2020|MT992749.1|20-04:1)92:1,(USA/VA-DCLS-1512/2020|MW197472.1|20-07:4,USA/CA-CZB-1275/2020|MT533209.1|20-04-16:2)93:1,(USA/NY-QDX-2365/2020|MW191144.1|20-03-16:0,ARG/Cordoba-891/2020|MW633900.1|20-09-14:8)94:1,(USA/CA-CZB-5668/2020|MW276489.1|20-08-08:5,USA/CA-CZB-2139/2020|MT750510.1|20-05-21:1)95:1,(USA/FL-BPHL-1324/2020|MW023523.1|20-07-14:8,USA/FL-BPHL-1988/2020|MW286761.1|20-04-18:2)96:1,(USA/NC-QDX-174/2020|MT786825.1|20-04-27:1,USA/1453xE2/2020|MW521402.1|20-07-05:4)97:2,(USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10:5,USA/WA-S2867/2020|MW173410.1|20-09-20:5)98:2,(England/MILK-6166F0/2020|20-07-05:1,England/ALDP-9BCA93/2020|20-09-09:3)99:7,(ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19:2,England/CAMC-947D3A/2020|20-07-17:5)100:1)91:2,(USA/WI-UW-1126/2020|MT929103.1|20-08-13:6,USA/WI-UW-1071/2020|MT929023.1|20-07-29:4)101:2,(USA/VA-DCLS-0481/2020|MT951936.1|20-05:3,USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06:0)102:1,(KOR/YS006/2020|MW345824.1|20-06-04:1,KOR/YS008/2020|MW345825.1|20-06-07:0)103:4,(USA/OR-QDX-3447/2020|MW521776.1|20-08-11:4,USA/WA-S1037/2020|MT642186.1|20-05-03:2)104:2)86:1,(USA/FL-BPHL-1680/2020|MW166145.1|20-08-11:5,USA/FL-BPHL-1350/2020|MW023549.1|20-07-15:5)105:3,(USA/NMDOH-2020305755/2020|MW070069.1|20-08-21:3,USA/NMDOH-2020308468/2020|MW228235.1|20-08-24:0)106:5,(USA/CA-CZB-1517/2020|MT628191.1|20-05-13:3,USA/CA-CZB-1793/2020|MT750334.1|20-04-16:1)107:1,(USA/WA-UW-2108/2020|MT345811.1|20-03-24:2,USA/MN-MDH-1434/2020|MT893000.1|20-03-31:6,(USA/AK-PHL660/2020|MW173157.1|20-06-27:1,(USA/WI-UW-1194/2020|MT981478.1|20-08-11:1,USA/CA-CZB-3284/2020|MW134086.1|20-07-17:3)110:1)109:6,((USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26:4,USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08:8)112:1,(USA/UT-05592/2020|MW054143.1|20-06-01:4,USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19:4)113:1)111:1,(USA/MN-QDX-981/2020|MW065078.1|20-03-15:0,USA/MD-MDH-0164/2020|MT937827.1|20-07-15:2)114:1,(USA/VA-DCLS-1006/2020|MT952676.1|20-06:4,USA/CA-QDX-2685/2020|MW191430.1|20-03-17:1,(USA/FL-BPHL-0876/2020|MT890355.1|20-07-09:4,USA/TX-DSHS-0347/2020|MW114984.1|20-06-13:6)116:1)115:1,(USA/MN-QDX-1328/2020|MW065415.1|20-03-15:1,USA/TX-DSHS-1210/2020|MW246004.1|20-03-18:1)117:1,(USA/UT-00495/2020|MT444543.1|20-04-02:1,USA/UT-00353/2020|MT444564.1|20-03-27:1)118:1,(USA/UT-02970/2020|MW053933.1|20-05-01:2,USA/UT-08378/2020|MW206039.1|20-05-26:6)119:4,(USA/IL-UW-1064/2020|MT929016.1|20-07-26:0,USA/VA-DCLS-1666/2020|MW280480.1|20-08:3)120:9)108:1,(USA/WI-UW-1119/2020|MT929068.1|20-07-27:0,USA/WI-UW-1005/2020|MT846691.1|20-07-17:6)121:2,(USA/FL-BPHL-1651/2020|MW166116.1|20-07-03:2,USA/FL-BPHL-2138/2020|MW286694.1|20-06-27:3)122:2,(England/CAMB-7771E/2020|20-03-30:1,England/CAMB-7DC91/2020|20-04-05:1)123:2,(USA/WI-UW-1092/2020|MT929042.1|20-07-27:4,USA/TX-DSHS-1232/2020|MW309089.1|20-03-25:1)124:1,(USA/MD-MDH-0071/2020|MT827237.1|20-05-25:1,USA/MD-MDH-0066/2020|MT827232.1|20-05-25:4)125:3,(USA/WA-QDX-235/2020|MT806806.1|20-04-27:1,USA/WA-S1266/2020|MT821676.1|20-05-13:3)126:1,(USA/VA-DCLS-0426/2020|MT679166.1|20-05:1,USA/VA-DCLS-0187/2020|MT450889.1|20-04:1)127:1,(USA/UT-QDX-2224/2020|MW191025.1|20-03-13:1,USA/TX-DSHS-0313/2020|MW115058.1|20-06-13:3)128:1,(USA/FL-QDX-1620/2020|MW190373.1|20-03-16:2,USA/FL-BPHL-0109/2020|MT872200.1|20-04-30:8)129:1,((Scotland/EDB3598/2020|20-04-27:2,Scotland/EDB2451/2020|20-04-23:1)131:1,(England/MILK-9934B2/2020|20-08-26:5,Switzerland/240029/2020|LR880608.1|20-08-10:1)132:18)130:1,((England/RAND-12B3F28/2021|21-02-09:0,England/RAND-12B3CF4/2021|21-02-09:0)134:17,((USA/CA-QDX-2817/2020|MW460624.1|20-12-26:3,USA/CA-QDX-2803/2020|MW460610.1|20-12-26:2)136:3,(USA/CA-QDX-3684/2021|MW545275.1|21-01-08:19,USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13:7,(USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08:9,USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20:2)138:2)137:5)135:7,(USA/OH-UHTL-3/2020|MW585340.1|20-01-05:5,USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18:7)139:5,(USA/MA-MGH-02814/2020|MW454549.1|20-09-24:3,USA/MA-MGH-03386/2020|MW454697.1|20-11-09:3)140:3)133:1,(USA/TX-DSHS-0780/2020|MW147526.1|20-05-21:3,USA/MN-MDH-1557/2020|MT958254.1|20-08-03:8)141:1,(USA/MN-MDH-1596/2020|MT997714.1|20-05-12:1,USA/CA-CZB0731/2020|MT385450.1|20-03-31:2)142:1,((England/MILK-958598/2020|20-06-09:5,England/ALDP-4F4092/2020|20-06-24:6)144:1,(England/LIVE-A91F7/2020|20-03-25:1,England/CAMB-1AE865/2020|20-04-30:4)145:1)143:1,(USA/MA_MGH_00458/2020|MT520347.1|20-04-04:1,USA/MA_MGH_00445/2020|MT520273.1|20-04-01:1)146:1,(USA/FL-BPHL-1724/2020|MW206414.1|20-10-01:3,USA/FL-BPHL-1147/2020|MT956757.1|20-08-18:4)147:6,(USA/CA-CZB-3886/2020|MW134282.1|20-07-21:3,USA/IL-UW-385/2020|MT772536.1|20-05-23:4)148:2,(USA/NMDOH-2020135004/2020|MW006582.1|20-06-18:3,USA/NMDOH-2020126568/2020|MW006567.1|20-06-15:1)149:2,(USA/MN-MDH-1464/2020|MT919997.1|20-03-24:1,USA/WA-UW-2008/2020|MT326031.1|20-03-24:2)150:2,(USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29:2,USA/UT-03041/2020|MW053962.1|20-05-01:2)151:3,(USA/MD-MDH-0129/2020|MT937319.1|20-07-08:1,USA/TX-DSHS-1524/2020|MW349179.1|20-06-23:1)152:3,(USA/WA-UW-6327/2020|MT412324.1|20-04-02:1,USA/WA-UW-3832/2020|MT358685.1|20-03-26:2)153:1,(USA/MI-QDX-371/2020|MW064412.1|20-03-23:1,USA/MI-QDX-298/2020|MW064340.1|20-03-21:1)154:1,(USA/TX-QDX-261/2020|MT806804.1|20-05-01:1,USA/NMDOH-2020174703/2020|MW070044.1|20-07-02:2)155:2,(USA/WA-S2725/2020|MT947550.1|20-07-07:7,USA/TX-DSHS-0675/2020|MW093567.1|20-07-16:1)156:2,(USA/CA-CZB-10856/2020|MW276376.1|20-07-28:5,USA/WI-UW-994/2020|MT846680.1|20-07-20:0)157:6,(England/BRIS-128CA3/2020|20-04-14:2,England/BRIS-12B1CF/2020|20-05-15:4,(England/BRIS-12C762/2020|20-05-13:3,England/BRIS-127AD7/2020|20-04-16:1)159:2)158:2,(USA/WI-UW-491/2020|MT750074.1|20-06-11:2,USA/WI-UW-522/2020|MT750102.1|20-06-24:0)160:3,(USA/DC-HP00089/2020|MT509482.1|20-03-31:1,USA/UT-03817/2020|MT873871.1|20-04-03:2)161:1,(USA/MN-MDH-1643/2020|MW020074.1|20-06-08:2,USA/MN-MDH-1610/2020|MT997728.1|20-04-28:3)162:3,(USA/IL-UW-1065/2020|MT929017.1|20-04-20:1,USA/CA-QDX-2335/2020|MW191073.1|20-03-17:2)163:1,(USA/MI-QDX-620/2020|MW064645.1|20-03-17:1,USA/MI-QDX-595/2020|MW064630.1|20-03-18:1)164:1,(England/BRIS-12D9F2/2020|20-05-06:1,England/BRIS-12B156/2020|20-05-08:1)165:2,(USA/WA-QDX-2548/2020|MW191307.1|20-03-16:1,AUS/VIC1161/2020|MT451779.1|20-04-09:2)166:1,(USA/CA-CZB-2223/2020|MW035933.1|20-05-31:6,USA/CA-CZB-4063/2020|MW134429.1|20-08-04:9)167:1,(England/OXON-B15A5/2020|20-04-29:4,England/BRIS-129D72/2020|20-04-15:2)168:1,(USA/MN-MDH-1616/2020|MT997734.1|20-04-24:2,USA/MN-CDC-6364/2020|MT967959.1|20-05-21:5)169:1,(USA/VA-DCLS-1282/2020|MW067700.1|20-08:8,USA/COVID20-1144/2020|MW067817.1|20-07-10:1)170:5,(USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01:1,USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19:2)171:9,(USA/CA-QDX-2032/2020|MW190749.1|20-03-17:1,USA/CA-QDX-2576/2020|MW191310.1|20-03-16:1)172:1,(Wales/PHWC-1662B6/2020|20-06-13:7,Wales/PHWC-26B12/2020|20-03-29:0)173:2,(USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09:1,USA/CT-UW-4372/2020|MT345874.1|20-03-30:2)174:1,(England/BRIS-12BF3E/2020|20-05-09:5,England/BRIS-12DF1E/2020|20-06-04:4)175:2,(USA/CA-CZB-3630/2020|MW134171.1|20-07-23:6,USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26:2)176:1,(USA/TX-DSHS-1035/2020|MW228203.1|20-06-15:2,USA/TX-DSHS-1428/2020|MW326536.1|20-06-23:1)177:2,(USA/TX-DSHS-0051/2020|MW039116.1|20-05-09:0,USA/TX-DSHS-1673/2020|MW406726.1|20-06-24:3)178:4,(USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08:9,USA/VA-DCLS-1517/2020|MW197475.1|20-07:2)179:6,(USA/WI-UW-1268/2020|MW035438.1|20-08-25:6,USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31:2)180:3,(Northern_Ireland/NIRE-1021DD/2020|20-03-14:1,USA/CA-CZB-2429/2020|MW036038.1|20-05-21:4)181:1,(USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30:2,USA/MA-MGH-03346/2020|MW454682.1|20-11-05:5)182:5,(Scotland/EDB6146/2020|20-05-14:3,Scotland/EDB6052/2020|20-05-08:0)183:2,(England/CAMB-7FBCF/2020|20-04-16:1,England/CAMB-784BC/2020|20-04-06:1)184:2,(England/PHEC-15A73/2020|20-03-29:3,USA/CA-QDX-796/2020|MW064788.1|20-03-23:3)185:2,(B90|LR898037.1|?:1,O9|LR963074.1|?:2)186:2,(USA/TX-DSHS-1331/2020|MW322992.1|20-04-01:3,USA/WI-UW-738/2020|MT772509.1|20-06-30:2)187:1,(USA/TX-DSHS-0596/2020|MW075691.1|20-06-03:4,USA/TX-DSHS-0971/2020|MW217406.1|20-06-15:2)188:3,(USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07:2,USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18:2)189:2,(ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09:1,England/CAMC-946515/2020|20-07-15:11)190:1)61:1,((USA/FL-BPHL-1462/2020|MW040672.1|20-04-20:0,USA/FL-BPHL-1813/2020|MW206463.1|20-04-03:3)192:2,((BHR/600023154_S29/2020|MW237743.1|20-10-14:9,BHR/920262933_S19_L001/2020|MW228054.1|20-06-19:1)194:1,((England/ALDP-955F15/2020|20-06-08:1,England/MILK-9A6856/2020|20-08-31:5)196:4,(England/ALDP-94EB75/2020|20-06-17:0,England/ALDP-6E2806/2020|20-07-01:2)197:2)195:1,(Scotland/QEUH-969725/2020|20-08-14:2,England/QEUH-AD1648/2020|20-10-26:5)198:10)193:1,(USA/WI-UW-249/2020|MT706376.1|20-03-16:2,USA/WI-UW-84/2020|MT706205.1|20-03-24:3)199:1,(USA/VA-DCLS-0593/2020|MT951960.1|20-03:2,USA/TX-CDC-3009/2020|MT512440.1|20-03-10:1)200:1,(USA/FL-BPHL-1673/2020|MW166138.1|20-07-06:4,USA/MD-MDH-0286/2020|MW240750.1|20-10-13:5)201:4,(England/PHEC-1C872/2020|20-04-16:2,England/BRIS-130015/2020|20-04-11:1)202:2,(USA/UT-04888/2020|MW084559.1|20-05-26:2,USA/UT-04282/2020|MW084509.1|20-05-14:3)203:1,(USA/MA_MGH_00136/2020|MT520439.1|20-03-25:0,USA/MA_MGH_00486/2020|MT520279.1|20-03-27:1)204:1,(Wales/PHWC-15DFD9/2020|20-05-14:7,Wales/PHWC-2AF12/2020|20-04-06:1)205:1,(England/CAMC-B533A0/2020|20-11-08:8,England/MILK-9781E9/2020|20-07-29:6)206:4,(321398|LR962930.1|20-10-13:1,England/QEUH-B8053B/2020|20-11-14:1)207:14,(IHUCOVID-0441|LR794655.1|?:2,IHUCOVID-0428|LR794641.1|?:1)208:3,(USA/WA-S4490/2021|MW648014.1|21-01-21:2,USA/WA-S3458/2020|MW494078.1|20-12-07:1)209:14,(hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?:0,Switzerland/100363/2020|LR884411.1|20-03-20:0)210:2)191:1,(USA/FL-BPHL-0401/2020|MT757087.1|20-05-14:2,USA/CA-CZB-14951/2020|MW565126.1|20-06-06:3,((England/CAMC-A3E658/2020|20-10-05:11,England/MILK-A47DDF/2020|20-10-05:11)213:2,((England/MILK-5642D2/2020|20-06-10:3,England/CAMB-1B3593/2020|20-05-26:5)215:1,(England/SHEF-CDD62/2020|20-05-27:3,England/SHEF-10B22B9/2020|20-04-20:1)216:4)214:1,(England/LOND-DC4E3/2020|20-11-04:5,England/MILK-99D3AC/2020|20-08-31:5)217:6,(IND/GBRC-366a/2020|MT951170.1|20-06-18:1,IND/GBRC-392b/2020|MT954593.1|20-07-06:7)218:1,(Switzerland/310517/2020|LR898824.1|20-10-08:5,England/MILK-9AB1A1/2020|20-08-31:9)219:3,(SAU/596/2020|MT755893.1|20-02-18:1,BHR/920265546_S18_L001/2020|MW228055.1|20-06-21:2,(Scotland/QEUH-A9E7BD/2020|20-10-20:1,Scotland/EDB7778/2020|20-09-16:1)221:6)220:1,(England/ALDP-B75065/2020|20-11-12:9,Scotland/QEUH-AD4AFE/2020|20-10-27:9)222:5,(SAU/578/2020|MT755891.1|20-02-17:2,Scotland/EDB6640/2020|20-05-28:6,((England/CAMC-A65DDB/2020|20-10-11:1,England/CAMC-AAF5A0/2020|20-10-22:3)225:7,(England/MILK-A192C8/2020|20-10-01:4,England/QEUH-9F3FDD/2020|20-09-24:0)226:6,(England/MILK-ABBF2B/2020|20-10-22:2,England/QEUH-96A85E/2020|20-08-14:1)227:2,(HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06:1,HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06:1)228:7)224:1,((England/PHEC-149F0D/2020|20-11-19:0,England/MILK-BE717A/2020|20-11-29:3)230:9,(CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04:2,Scotland/QEUH-BEAF22/2020|20-12-04:5)231:8)229:2,(England/QEUH-9B703C/2020|20-09-09:3,England/MILK-970CE0/2020|20-08-18:1)232:8,(BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26:4,BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14:4)233:1,(England/CAMC-1263B05/2021|21-02-10:11,England/QEUH-AD3822/2020|20-10-26:4)234:6,(England/SHEF-10C9BD2/2020|20-12-20:2,England/SHEF-10CC3AA/2020|20-12-17:1)235:14,(England/MILK-9A94E6/2020|20-09-01:4,England/MILK-566C5A/2020|20-06-12:0)236:3,(England/CAMC-C2CDFC/2020|20-12-07:1,England/MILK-CAA0EE/2020|20-12-18:1)237:6)223:2,(England/PHEC-1491AD/2020|20-10-17:3,(England/MILK-A1BC04/2020|20-10-03:10,((England/MILK-97356A/2020|20-08-14:1,(England/CAMC-A649C9/2020|20-10-10:2,England/MILK-B04890/2020|20-10-24:2)242:2)241:0,England/MILK-A230C1/2020|20-10-03:1)240:1)239:1)238:11,(England/TFCI-26FA9B7/2020|20-12-31:0,England/MILK-B94ACC/2020|20-11-13:1)243:16,(England/MILK-EB78C6/2021|21-01-02:2,England/CAMC-C44338/2020|20-12-10:4)244:8,((England/QEUH-96A29C/2020|20-08-13:1,England/ALDP-9EA6D4/2020|20-09-24:2)246:2,(England/MILK-A6AEC4/2020|20-10-09:5,England/MILK-B889A0/2020|20-11-14:8)247:1)245:3,(England/ALDP-EEACDD/2021|21-01-03:9,England/LIVE-DDCD09/2021|21-01-02:16)248:3)212:1,(USA/VA-DCLS-0229/2020|MT558657.1|20-04:4,USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07:1)249:1,(Scotland/CVR3970/2020|20-08-22:4,England/MILK-A7D5AB/2020|20-10-13:6)250:4,(USA/UT-01683/2020|MT536956.1|20-04-13:2,USA/UT-03892/2020|MT711875.1|20-04-13:1)251:1,(USA/CA-CZB-1414/2020|MT628125.1|20-03-16:1,USA/CA-CZB-11962/2020|MW276532.1|20-06-17:2)252:1,(USA/WA-S1281/2020|MT821642.1|20-05-12:1,USA/WA-S2367/2020|MT831837.1|20-06-11:3)253:2,(USA/VA-DCLS-0804/2020|MT925987.1|20-07:2,USA/VA-DCLS-1454/2020|MW067779.1|20-08:4)254:4,(England/NORW-E7EBA/2020|20-05-06:3,USA/CA-QDX-1044/2020|MW065007.1|20-03-17:2)255:1,(USA/WI-UW-413/2020|MT772562.1|20-04-07:2,USA/WI-UW-288/2020|MT706396.1|20-04-08:1)256:2,(USA/GA-CDC-5095/2020|MW053297.1|20-06-29:2,USA/FL-BPHL-1097/2020|MT956684.1|20-08-19:0)257:5,(England/MILK-99DB3B/2020|20-08-31:4,England/ALDP-5D3DEC/2020|20-06-19:0)258:2,(USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05:1,USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26:2)259:2,((England/MILK-ACEE55/2020|20-10-21:7,Switzerland/260079/2020|LR882418.1|20-08-25:6)261:3,(Scotland/EDB6391/2020|20-05-13:3,Scotland/EDB5108/2020|20-03-31:0)262:1,(USA/VA-DCLS-0489/2020|MT951943.1|20-05:2,USA/VA-DCLS-1388/2020|MW067734.1|20-07:5)263:2,(Scotland/QEUH-961BB8/2020|20-08-02:3,Switzerland/250091/2020|LR881897.1|20-08-19:5)264:2)260:3,(USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18:0,USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16:1)265:3,(USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19:1,USA/TX-QDX-3305/2020|MW522496.1|20-07-23:4)266:3)211:1)53:1,(USA/WI-UW-1105/2020|MT929055.1|20-07-24:4,USA/RML-22/2020|MW221270.1|20-08-30:9)267:4,(England/MILK-9750EF/2020|20-08-21:2,((England/MILK-9C3D45/2020|20-09-09:2,England/QEUH-9C7EA8/2020|20-09-11:1)270:2,England/MILK-9A8AB8/2020|20-08-31:1)269:3,(England/CAMC-106415F/2021|21-01-15:6,England/CAMC-C470F2/2020|20-12-10:3)271:6)268:9,(BHR/740704818/2021|MW661071.1|21-01-26:3,England/QEUH-E93C6A/2021|21-01-04:6)272:19,(Scotland/CVR2931/2020|20-04-22:3,Scotland/GCVR-172150/2020|20-03-30:0)273:2,(England/BRIS-124885/2020|20-03-24:2,England/BRIS-122C4F/2020|20-04-02:1)274:2,(USA/RI-CDC-0556/2020|MT304488.1|20-03-01:1,Switzerland/100198/2020|LR884312.1|20-03-17:1,(USA/WI-UW-1046/2020|MT928999.1|20-07-29:7,USA/TX-DSHS-0409/2020|MW127871.1|20-06-01:7)276:2,((Scotland/EDB3341/2020|20-04-08:0,Scotland/EDB6880/2020|20-04-30:3)278:1,(USA/CA-CDC-4728/2020|MW001919.1|20-06-16:2,USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18:5)279:1,(England/ALDP-B252AA/2020|20-11-04:12,USA/CA-CZB-11549/2020|MW276537.1|20-07-12:3)280:2,(USA/CA-CZB-11793/2020|MW276612.1|20-09-22:6,USA/CA-CZB-2502/2020|MW035993.1|20-05-25:3)281:1,(USA/CA-CZB-11521/2020|MW276549.1|20-07-18:1,USA/CA-CZB-11513/2020|MW276567.1|20-08-02:2)282:3,(USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28:2,USA/MD-MDH-0227/2020|MW157244.1|20-09-23:9)283:1,(England/LOND-D5444/2020|20-04-15:1,Scotland/CVR3238/2020|20-04-26:1)284:1,(USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18:8,USA/CA-CZB-3893/2020|MW134296.1|20-07-21:6,(USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22:1,USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21:1)286:9)285:1,(Scotland/EDB3662/2020|20-04-28:1,England/ALDP-6FB8FB/2020|20-06-29:4)287:1,(USA/CA-CDC-4704/2020|MW001903.1|20-06-04:1,USA/CA-CZB-4000/2020|MW134394.1|20-07-29:4)288:2,(England/LIVE-A00F3/2020|20-06-04:4,England/QEUH-544733/2020|20-05-14:2)289:1,(USA/TX-DSHS-1179/2020|MW246020.1|20-06-16:6,USA/MN-MDH-2008/2020|MW279332.1|20-09-29:5)290:1,(England/MILK-654007/2020|20-07-04:10,England/OXON-B1781/2020|20-05-04:1)291:1,(USA/CA-CZB-3624/2020|MW134177.1|20-07-30:5,USA/CA-CZB-4040/2020|MW134375.1|20-08-12:7)292:1,((USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08:4,USA/FL-BPHL-2857/2020|MW566820.1|20-09-17:3)294:1,(USA/CA-CZB-3903/2020|MW134295.1|20-07-24:4,USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19:1)295:1)293:1,(Switzerland/220021/2020|LR882232.1|20-07-27:2,England/QEUH-96E08F/2020|20-08-18:3)296:3,(USA/TX-DSHS-0945/2020|MW190134.1|20-07-03:1,USA/TX-DSHS-1150/2020|MW252120.1|20-07-03:0)297:3,(England/MILK-977645/2020|20-07-24:2,England/CAMC-B325A1/2020|20-11-05:4)298:1,(England/CAMC-B34141/2020|20-11-05:13,England/MILK-A795AF/2020|20-10-14:12)299:2,(USA/MD-MDH-0853/2021|MW621444.1|21-01-20:2,England/PHEC-14F392/2020|20-12-24:4)300:8,(USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29:16,USA/TX-DSHS-1114/2020|MW228282.1|20-06-21:2)301:4,(USA/WI-UW-1288/2020|MW035458.1|20-09-02:1,USA/WA-S2808/2020|MW077495.1|20-08-31:3)302:5,(England/CAMC-94C02D/2020|20-07-15:1,England/MILK-95DBDD/2020|20-06-20:1)303:7)277:1,(Scotland/CVR3054/2020|20-04-24:2,England/MILK-95698F/2020|20-06-06:4)304:1,((England/CAMB-79ECC/2020|20-04-01:0,England/PHEC-224A2/2020|20-06-08:4)306:2,USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09:11)305:2,(USA/AK-PHL414/2020|MT946886.1|20-06-03:2,USA/AK-PHL689/2020|MW173160.1|20-06-29:5)307:2,(England/MILK-974596/2020|20-08-17:6,(Switzerland/310363/2020|LR898676.1|20-10-07:5,(Switzerland/300264/2020|LR898541.1|20-10-01:2,England/QEUH-963433/2020|20-08-10:1)310:2)309:2)308:1,(England/NORW-ECD21/2020|20-05-29:5,England/NORW-E755B/2020|20-05-04:2)311:2,(England/MILK-978626/2020|20-07-30:5,England/MILK-9A565D/2020|20-09-03:6)312:1,(USA/NM-QDX-264/2020|MT806796.1|20-04-30:4,USA/CA-CZB-10902/2020|MW276406.1|20-08-19:9)313:1,(Scotland/EDB1198/2020|20-04-08:3,England/PHEC-20A84/2020|20-04-20:2)314:1,(Scotland/EDB6324/2020|20-06-01:3,Scotland/EDB4579/2020|20-05-06:2)315:2,((((England/MILK-ACC08E/2020|20-10-21:7,(Scotland/QEUH-9696CE/2020|20-08-14:3,(England/MILK-9A9F7C/2020|20-08-31:2,England/OXON-F42364/2020|20-12-18:5)321:2)320:3,(((England/CAMC-A57F03/2020|20-10-09:3,England/MILK-A7D15C/2020|20-10-13:5)324:1,(Wales/PHWC-47F3A5/2020|20-10-07:2,England/ALDP-A85BCC/2020|20-10-17:2)325:1)323:1,((England/ALDP-A2FCA3/2020|20-10-05:1,Scotland/MILK-A69E6B/2020|20-10-09:2)327:1,(England/MILK-A7D1A7/2020|20-10-13:2,England/MILK-A91486/2020|20-10-16:3)328:1)326:2,(((England/ALDP-AA169C/2020|20-10-22:2,England/MILK-A474DA/2020|20-10-06:1)331:1,(England/ALDP-B483EA/2020|20-11-07:3,England/QEUH-AA0035/2020|20-10-20:1)332:1)330:1,(AUT/2021006354/2021|MW672357.1|21-02:5,England/MILK-E7F4C6/2021|21-01-02:2)333:6)329:4)322:5,(England/CAMC-B3582D/2020|20-11-05:2,England/MILK-A796E8/2020|20-10-14:8)334:2)319:1,(((England/MILK-9C2766/2020|20-09-10:4,England/ALDP-A95A9F/2020|20-10-19:5)337:2,Northern_Ireland/QEUH-969C53/2020|20-08-14:2)336:2,(England/ALDP-9E79B0/2020|20-09-24:6,England/MILK-B561FE/2020|20-11-06:5)338:1)335:3)318:3,(Scotland/CVR2213/2020|20-04-11:3,Scotland/CVR1909/2020|20-04-06:3)339:2)317:1,(Netherlands/Friesland_9/2020|LR878060.1|20-03-30:2,Netherlands/Friesland_6/2020|LR878056.1|20-03-28:2)340:2)316:1)275:1,(England/NOTT-10E1B3/2020|20-03-19:3,USA/WI-UW-37/2020|MT706158.1|20-03-22:1,(Wales/PHWC-360E3/2020|20-04-26:6,USA/CA-QDX-2630/2020|MW191335.1|20-03-15:2)342:2,(Netherlands/NA_289/2020|LR878031.1|20-03-31:3,France/10065EE/2020|MT470176.1|20-03:2)343:1,(IND/nimh-19510/2020|MW181843.1|20-05-16:7,IND/GBRC174b/2020|MT607610.1|20-06-05:1)344:2,(France/10036BG/2020|MT470106.1|20-03:0,IHUCOVID-0033|LR794417.1|?:2)345:1,(England/PORT-2D0D4C/2020|20-04-27:4,Switzerland/100210/2020|LR884314.1|20-03-18:2)346:1,(POL/PL_MCB_72/2020|MW273854.1|20-05-10:3,POL/PL_MCB_97/2020|MW273879.1|20-05-10:1)347:2,(Scotland/CVR3629/2020|20-05-24:1,Scotland/QEUH-5456F9/2020|20-05-13:1)348:3,(England/QEUH-9CE80D/2020|20-09-17:6,England/QEUH-990752/2020|20-08-29:0)349:10,(AUS/VIC38/2020|MT450953.1|20-03-11:1,IHUCOVID-0133|LR794459.1|?:1)350:1,(England/PHEC-1555C0/2021|21-01-16:6,England/MILK-E6578E/2020|20-12-30:4)351:13,(England/CAMC-106052A/2021|21-01-16:6,England/LOND-12F6633/2020|20-12-15:4)352:17,(Switzerland/240009/2020|LR880588.1|20-08-07:0,Switzerland/240084/2020|LR880634.1|20-08-12:4)353:7)341:1,((USA/MN67-MDH67/2020|MT911566.1|20-03-14:0,Netherlands/NA_292/2020|LR878032.1|20-04-01:1)355:1,(Switzerland/101166/2020|LR824397.1|20-03-31:1,Switzerland/100154/2020|LR824311.1|20-03-16:1)356:3,(PER/covper020/2020|MW030251.1|20-07-03:7,PER/covper091/2020|MW030227.1|20-03-17:0)357:2,(England/CAMB-737D6/2020|20-03-31:1,England/CAMB-1B08D9/2020|20-05-04:2)358:4)354:1,(Scotland/CVR2927/2020|20-04-22:3,Scotland/GCVR-173C30/2020|20-04-07:1)359:1,((((England/MILK-BB0022/2020|20-11-18:0,England/MILK-BB0031/2020|20-11-18:0)363:1,England/PHEC-152C73/2020|20-11-16:1)362:2,(Scotland/QEUH-96B4E0/2020|20-08-17:3,England/MILK-9AA782/2020|20-08-31:4)364:1,(Scotland/QEUH-9D11C0/2020|20-09-16:1,England/QEUH-A0077A/2020|20-10-02:3)365:7,(England/ALDP-AA0ED1/2020|20-10-22:2,England/QEUH-A4CF6B/2020|20-10-05:2,((England/ALDP-9BE8B5/2020|20-09-09:1,Scotland/EDB10724/2020|20-12-04:5)368:1,(Scotland/CVR4309/2020|20-09-14:1,(England/CAMC-9DFBC4/2020|20-09-21:2,England/QEUH-AD1165/2020|20-10-25:3)370:1,(England/ALDP-FB5E3E/2021|21-01-11:5,England/ALDP-E8756E/2021|21-01-04:3)371:4,(England/ALDP-A2EAE6/2020|20-10-05:5,Scotland/QEUH-A636C3/2020|20-10-10:3)372:2,(England/QEUH-A76C07/2020|20-10-12:1,England/MILK-AC7997/2020|20-10-21:1)373:1,(Scotland/QEUH-9DC927/2020|20-09-22:3,Scotland/QEUH-9B75D3/2020|20-09-04:1)374:1)369:1)367:1,(England/QEUH-9B3A8D/2020|20-09-04:2,England/NORW-F1F9C/2020|20-10-24:6)375:8,((England/QEUH-AE4EA4/2020|20-10-27:3,England/ALDP-9BECB9/2020|20-09-10:1)377:2,(Wales/PHWC-16E6A3/2020|20-10-02:4,England/MILK-9A9D09/2020|20-09-01:1)378:1,(England/QEUH-B6C0E9/2020|20-11-11:4,England/CAMC-AEA62E/2020|20-10-25:1)379:4)376:1,(England/PHEC-14E15D/2020|20-12-09:1,England/PHEC-149635/2020|20-10-28:0)380:6)366:1,(Switzerland/270068/2020|LR882987.1|20-09-02:1,Switzerland/332169/2020|LR898966.1|20-10-22:2)381:6,((England/ALDP-A95DE1/2020|20-10-20:5,England/ALDP-9E75E9/2020|20-09-25:1)383:2,(England/MILK-AC7B0A/2020|20-10-21:4,England/NOTT-11336A/2020|20-09-16:3)384:1)382:1,(England/MILK-ABB8D5/2020|20-10-21:2,England/NORT-2884A8/2020|20-11-22:5)385:1,((England/MILK-A799FE/2020|20-10-15:3,England/CAMC-A417F5/2020|20-10-06:3)387:1,(England/QEUH-AE2A48/2020|20-10-26:2,England/ALDP-A68CF9/2020|20-10-12:1)388:1,(England/CAMB-1B6439/2020|20-09-22:2,England/MILK-9F1898/2020|20-09-25:1)389:2)386:1,((England/MILK-A7CDC2/2020|20-10-13:2,England/CAMC-A5845E/2020|20-10-08:5)391:1,(England/ALDP-AA10DA/2020|20-10-22:3,Wales/PHWC-4815AA/2020|20-10-13:1)392:2)390:1,(England/QEUH-AD0DDB/2020|20-10-26:3,Wales/MILK-9E3240/2020|20-09-21:2)393:6)361:1,England/ALDP-A6CC8C/2020|20-10-14:3)360:6,(USA/CA-CZB-2091/2020|MT750490.1|20-05-07:5,Switzerland/140091/2020|LR824563.1|20-04-18:3)394:1,(England/ALDP-49A5AE/2020|20-06-13:3,England/ALDP-4A2A77/2020|20-05-22:0)395:3,(England/BRIS-12755E/2020|20-04-22:3,England/BRIS-12468B/2020|20-04-09:1)396:1,(England/NORW-E9DF7/2020|20-05-02:1,Scotland/EDB156/2020|20-03-23:3)397:1,(Wales/PHWC-27B20/2020|20-03-30:1,Wales/PHWC-2624A/2020|20-03-27:1,(Wales/PHWC-16930B/2020|20-04-01:1,Wales/PHWC-34285/2020|20-04-14:2)399:1)398:1,(USA/UT-08320/2020|MW206019.1|20-05-15:4,USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14:3)400:2,(Wales/PHWC-2BF8A/2020|20-04-02:3,Wales/PHWC-29E43/2020|20-04-04:1)401:1,(England/LOND-D3534/2020|20-03-27:1,England/PHEC-20C24/2020|20-04-21:3)402:1,(England/CAMB-7D2EA/2020|20-04-06:3,England/LIVE-A63E5/2020|20-03-18:1)403:1,(Wales/PHWC-260C8/2020|20-03-26:2,England/BRIS-12F969/2020|20-03-30:3)404:1,(England/PHEC-2083F/2020|20-04-13:3,Wales/PHWC-16C6F0/2020|20-06-09:2)405:1,(England/QEUH-B2DD0B/2020|20-11-03:12,England/MILK-A7B0BB/2020|20-10-14:9)406:4,(Wales/PHWC-27461/2020|20-03-31:1,Wales/PHWC-29F13/2020|20-04-01:2)407:2,(AUS/VIC989/2020|MT451674.1|20-03-31:2,AUS/VIC1056/2020|MT451723.1|20-04-03:1)408:2,((USA/TX-DSHS-0342/2020|MW114979.1|20-06-13:5,USA/TX-DSHS-1397/2020|MW309099.1|20-05-20:1)410:3,(England/BRIS-12B2BD/2020|20-05-02:5,England/BRIS-128DCE/2020|20-04-14:1)411:1)409:1,(England/LIVE-A65EF/2020|20-03-19:1,Wales/PHWC-2B7CE/2020|20-04-12:2)412:1,(IND/GBRC238b/2020|MT676367.1|20-06-12:4,IND/GBRC209a/2020|MT664202.1|20-06-11:1)413:7,(Scotland/GCVR-1725BE/2020|20-04-04:2,Scotland/CVR30/2020|20-03-13:0)414:2,(IND/GBRC99/2020|MT509504.1|20-05-06:1,IND/GBRC31/2020|MT467247.1|20-04-29:3)415:2,(AUS/VIC1239/2020|MT451821.1|20-04-02:1,AUS/VIC1282/2020|MW153048.1|20-04-08:3)416:2,(IND/GBRC128/2020|MT539172.1|20-05-02:1,IND/GBRC123/2020|MT539176.1|20-05-02:2)417:1,(POL/PL_MCB_32/2020|MW273814.1|20-04-22:3,POL/PL_MCB_75/2020|MW273857.1|20-04-16:0)418:2,(England/CAMB-7BED9/2020|20-04-04:2,Netherlands/NA_302/2020|LR878041.1|20-04-01:1)419:1,(England/NORT-289814/2020|20-04-01:2,England/ALDP-9ED57A/2020|20-05-08:3)420:2,(USA/WI-UW-1385/2020|MW035549.1|20-09-06:5,USA/TX-DSHS-0975/2020|MW217385.1|20-06-16:1)421:3,(USA/MA_MGH_00165/2020|MT520528.1|20-03-26:4,USA/MA_MGH_00711/2020|MT520198.1|20-04-08:3)422:2,(Scotland/CVR129/2020|20-03-13:1,Scotland/CVR52/2020|20-03-14:1)423:3,(England/ALDP-94D8D9/2020|20-06-20:2,England/ALDP-9442D4/2020|20-06-07:3)424:4,(Northern_Ireland/NIRE-1022CB/2020|20-03-25:2,Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27:5)425:1,(Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20:1,((GRC/202_32984/2020|MT459870.1|20-03-12:0,GRC/208_33922/2020|MT459876.1|20-03-14:0)428:1,England/CAMC-947875/2020|20-07-13:4,(England/PORT-2D3B4F/2020|20-04-18:5,England/EXET-136EE8/2020|20-04-20:3,(Northern_Ireland/NIRE-FB967/2020|20-08-17:3,England/QEUH-7A4BBB/2020|20-07-14:1)430:5,(USA/WA-S2264/2020|MT831437.1|20-06-09:2,USA/WA-S1922/2020|MT831459.1|20-06-03:1)431:2,((Wales/PHWC-360A7/2020|20-04-29:2,Wales/PHWC-260AA/2020|20-03-24:1)433:1,(England/BRIS-185470D/2020|20-05-01:0,England/BRIS-12AF02/2020|20-05-01:1)434:3)432:1,(England/CAMB-83FF9/2020|20-04-25:2,England/CAMB-75895/2020|20-03-18:2)435:3,(USA/WA-S2012/2020|MT831128.1|20-06-04:8,USA/WA-S1775/2020|MT834200.1|20-06-01:1)436:2,(England/ALDP-B82A0D/2020|20-11-14:1,USA/MD-MDH-0664/2021|MW524034.1|21-01-04:3,(England/MILK-11A5634/2021|21-01-29:5,GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12:2)438:1)437:12,(England/LOND-D6EBE/2020|20-04-03:2,England/SHEF-C88A2/2020|20-04-21:4)439:1,(USA/WA-S860/2020|MT642111.1|20-04-24:2,USA/MD-MDH-0380/2020|MW292639.1|20-10-27:8)440:1,(England/QEUH-A0AFB4/2020|20-10-01:8,England/ALDP-C48747/2020|20-12-12:11)441:1,(USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06:10,USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15:8,(USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08:1,USA/MA-MGH-03951/2021|MW617773.1|21-01-22:1)443:8)442:6)429:1,((Switzerland/230051/2020|LR882355.1|20-08-04:3,Wales/MILK-9C729D/2020|20-09-12:4)445:3,(England/BRIS-12A70A/2020|20-05-01:1,England/CAMB-77F61/2020|20-04-01:1)446:1)444:1,(England/PHEC-215FB/2020|20-04-29:3,England/PHEC-1B7C1/2020|20-04-08:0)447:1,(Switzerland/120182/2020|LR860799.1|20-04-27:5,England/ALDP-9545BA/2020|20-06-17:12)448:1,(England/ALDP-651C9D/2020|20-07-04:2,Scotland/CVR3919/2020|20-06-21:1)449:1,(England/ALDP-9558ED/2020|20-06-12:1,England/NORT-286255/2020|20-09-16:3)450:4,(England/BRIS-12F78D/2020|20-03-10:1,Switzerland/100802/2020|LR824314.1|20-03-25:2)451:1,(England/NORT-282972/2020|20-03-27:0,England/CAMB-80554/2020|20-04-09:1)452:1,(PHL/UPMNIH_C1/2020|MW243995.1|20-07:10,PHL/COVID-6009/2020|MT919790.1|20-07-18:4)453:2,(England/PHEC-20E4C/2020|20-04-16:2,England/NORT-283B7B/2020|20-04-02:2)454:1,(England/ALDP-95665B/2020|20-06-08:3,England/CAMB-7767B/2020|20-03-31:2)455:1,(England/CAMC-94328A/2020|20-07-25:0,England/CAMC-9424A3/2020|20-07-21:0)456:7,(USA/MA-QDX-3180/2021|MW505247.1|21-01-05:0,USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06:7)457:9,(England/MILK-A79D10/2020|20-10-15:4,England/PHEC-148F95/2020|20-10-15:4)458:9,(USA/CA-CZB-1932/2020|MT750412.1|20-04-15:2,USA/CA-CZB-1885/2020|MT750387.1|20-04-17:1)459:2,(USA/CA-CZB-2288/2020|MW036089.1|20-06-19:3,USA/CA-CZB-3891/2020|MW134292.1|20-07-21:4)460:2,(USA/VA-DCLS-1485/2020|MW205988.1|20-07:3,USA/VA-DCLS-1212/2020|MW067767.1|20-06:2)461:2,(USA/FL-BPHL-1506/2020|MW056153.1|20-07-24:4,USA/FL-BPHL-1469/2020|MW040679.1|20-05-09:0)462:1,(Switzerland/250060/2020|LR881882.1|20-08-18:4,England/QEUH-A77F0D/2020|20-10-12:6)463:4,(USA/CA-CZB-11677/2020|MW276577.1|20-08-16:3,USA/CA-CZB-13945/2020|MW565647.1|20-06-22:1)464:2,((England/QEUH-9AE4E1/2020|20-09-01:2,England/MILK-A180DE/2020|20-10-01:3)466:6,England/OXON-AEBC7/2020|20-04-12:1)465:2,(England/QEUH-96E27A/2020|20-08-20:3,England/MILK-74C001/2020|20-06-29:2)467:7,(England/LOND-D4C6B/2020|20-04-15:2,Wales/PHWC-164485/2020|20-05-02:1)468:2,(England/ALDP-5C701F/2020|20-06-19:2,England/ALDP-51F142/2020|20-06-02:0)469:3,(England/ALDP-955FAC/2020|20-06-08:5,England/ALDP-49E391/2020|20-05-20:1)470:3,(USA/CA-CZB-10287/2020|MW276300.1|20-09-03:7,USA/CA-CZB-3356/2020|MW134125.1|20-07-14:2)471:3,(England/LOND-126DFA5/2020|20-12-27:7,Wales/PHWC-4846A4/2020|20-10-24:8)472:6,(Northern_Ireland/NIRE-10677D/2020|20-05-14:1,Northern_Ireland/NIRE-106740/2020|20-05-14:2)473:2,(England/SHEF-C9FBB/2020|20-04-11:4,England/LOND-D6531/2020|20-04-22:3)474:1,(England/MILK-9705F4/2020|20-08-18:1,England/ALDP-9B6440/2020|20-08-28:0)475:2,((England/MILK-99D597/2020|20-08-30:6,(USA/MD-MDH-0841/2021|MW621433.1|21-01-17:0,USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11:8)478:21)477:2,Scotland/EDB6515/2020|20-06-15:0,((England/NORW-222D0F/2020|20-12-20:8,England/MILK-F72F49/2021|21-01-05:10)480:7,(USA/FL-CDC-21490280/2021|MW667214.1|21-01-27:6,USA/NY-CDC-21712201/2021|MW668883.1|21-02-04:5)481:4)479:1,(England/NORW-EE34B/2020|20-03-24:1,England/NORW-E8693/2020|20-04-16:2)482:2)476:1,(England/QEUH-AD487C/2020|20-10-26:3,England/QEUH-9B7B2C/2020|20-09-03:2)483:5,(Switzerland/250070/2020|LR881870.1|20-08-18:2,England/QEUH-9B5344/2020|20-09-02:2)484:3,(England/ALDP-6839B9/2020|20-07-02:1,England/ALDP-6BAB59/2020|20-06-29:2)485:3,(FRA/Env-Di/2020|MT709105.1|20-05-14:3,AUS/VIC1786/2020|MT612326.1|20-05-27:6)486:1,(England/CAMB-7620F/2020|20-03-30:2,TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15:2,(Scotland/QEUH-96C6AD/2020|20-08-07:6,Switzerland/270108/2020|LR882077.1|20-09-03:5)488:1)487:1,(England/PHEC-1DF03/2020|20-04-08:2,England/CAMB-1AB21F/2020|20-04-18:2)489:1,(USA/FL-BPHL-0838/2020|MT890317.1|20-06-20:2,USA/FL-BPHL-1607/2020|MW166073.1|20-07-28:1)490:1,(England/QEUH-9DE381/2020|20-09-21:8,England/QEUH-95E7D8/2020|20-08-06:3)491:3,(England/NOTT-111E3E/2020|20-06-10:5,England/NOTT-111117/2020|20-05-03:0)492:3,(England/ALDP-68EFBC/2020|20-07-02:1,England/ALDP-91F278/2020|20-06-23:3)493:2,(USA/GA-CDC-6435/2020|MT967964.1|20-07-29:4,USA/WI-UW-1202/2020|MW035373.1|20-08-06:3)494:3,(England/PHEC-16F19/2020|20-03-31:1,England/GSTT-265D4DF/2020|20-03-19:0)495:2,(England/LIVE-A2765/2020|20-05-20:3,England/ALDP-658C87/2020|20-07-03:3)496:3,(Northern_Ireland/NIRE-1038B9/2020|20-04-16:2,Northern_Ireland/NIRE-FCE85/2020|20-04-28:2,(Northern_Ireland/NIRE-FBB52/2020|20-04-13:1,Northern_Ireland/NIRE-FAC7E/2020|20-04-15:1)498:1)497:1,(England/NORT-283BE4/2020|20-04-03:1,(England/CAMB-81070/2020|20-04-20:1,(England/CAMB-72B44/2020|20-03-22:0,England/CAMB-822D3/2020|20-04-12:0)501:1,(England/ALDP-94DD07/2020|20-06-19:4,England/ALDP-49EC3C/2020|20-05-20:2)502:2,(PER/covper024/2020|MW030255.1|20-07-04:2,PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08:2)503:1,(PER/covper011/2020|MW030242.1|20-07-04:5,PER/covper040/2020|MW030271.1|20-05-05:2)504:1,(England/MILK-B1553B/2020|20-10-23:10,England/MILK-66F889/2020|20-07-03:4)505:1,(USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31:4,England/LOND-12F65DC/2021|21-01-19:11)506:6,(Switzerland/310500/2020|LR898805.1|20-10-08:4,Switzerland/300433/2020|LR898634.1|20-09-29:1)507:6,(England/QEUH-96BAA2/2020|20-08-14:3,Wales/ALDP-B19FFD/2020|20-11-01:6)508:6,(SRB/NS19622-16-06/2020|MW327528.1|20-06-15:0,PER/covper018/2020|MW030249.1|20-07-03:3)509:1)500:2)499:2,(DK/AD3_Farm1/2020|MT919525.1|20-06-14:2,DK/KL14_Farm1/2020|MT919536.1|20-06-17:0)510:2,(England/BRIS-123EDF/2020|20-04-08:1,England/BRIS-123F09/2020|20-04-08:1)511:2,(EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20:8,((EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02:0,EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02:0)514:4,Scotland/CVR41/2020|20-03-13:1,((England/CAMC-AEACFF/2020|20-10-25:7,(England/PHEC-149FA3/2020|20-11-20:5,England/QEUH-C9332B/2020|20-12-17:3)517:4)516:1,England/MILK-9A699F/2020|20-09-01:8)515:4,(England/CAMC-C3E586/2020|20-12-10:6,England/CAMC-DE5550/2020|20-12-29:4)518:7)513:1)512:2,(England/ALDP-9ECEAD/2020|20-05-05:4,England/BRIS-12DC53/2020|20-05-02:2)519:2,(Scotland/QEUH-7B078B/2020|20-07-19:2,England/MILK-993EA5/2020|20-08-22:3)520:5,(England/BRIS-124C89/2020|20-03-26:3,USA/WA-UW-6243/2020|MT412316.1|20-04-02:1,((England/ALDP-A525BB/2020|20-10-07:5,ISR/NH_M2_0614/2020|MW194121.1|20-06-14:6)523:2,(England/MILK-A45AF8/2020|20-10-06:5,Scotland/QEUH-A613BF/2020|20-10-13:10)524:1)522:1,((Switzerland/180039/2020|LR861669.1|20-07-01:3,Switzerland/220022/2020|LR882244.1|20-07-27:5)526:1,(Japan/TKYE627000_2020/2020|LC593811.1|20-08:1,Japan/TKYE624705_2020/2020|LC593810.1|20-07:4)527:5)525:1,(England/QEUH-962E81/2020|20-08-10:2,England/QEUH-96E605/2020|20-08-17:1)528:7,(England/QEUH-9F9265/2020|20-09-26:8,England/QEUH-98EE43/2020|20-08-25:3)529:1,(England/NORW-E8709/2020|20-04-18:2,UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06:3)530:2,(USA/ME-HETL-J0061/2020|MT886346.1|20-03-20:1,USA/CA-QDX-1599/2020|MW190335.1|20-03-19:3)531:1,(England/QEUH-9600C9/2020|20-08-05:7,England/QEUH-9B92F8/2020|20-09-07:6,(IND/GBRC455b/2020|MW600453.1|20-12-24:2,IND/GBRC455a/2020|MW600436.1|20-12-24:1)533:11)532:1,(USA/FL-BPHL-0905/2020|MT966149.1|20-06-24:2,USA/FL-BPHL-0303/2020|MT757111.1|20-05-30:1)534:1,(England/CAMB-76490/2020|20-03-30:3,England/CAMB-7CBD1/2020|20-04-05:2)535:1,(Japan/TKYE630414_2020/2020|LC593818.1|20-08:2,Japan/TKYE622411_2020/2020|LC593808.1|20-07:1)536:4,(England/MILK-A18C8F/2020|20-10-03:0,England/ALDP-C3C1FD/2020|20-12-10:4)537:8,(Wales/PHWC-15E0B7/2020|20-05-13:3,Wales/PHWC-30957/2020|20-04-08:1)538:2,(Japan/TKYVE11964_2020/2020|LC556322.1|20-04:3,LC573289.2|20-06:1)539:2,(TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15:1,TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15:4)540:4,(USA/CA-CZB-4049/2020|MW134382.1|20-08-21:2,USA/CA-CZB-3294/2020|MW134115.1|20-07-20:4)541:2)521:1,(((BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08:1,USA/WI-UW-114/2020|MT706234.1|20-03-30:2,(USA/FL-BPHL-2014/2020|MW286586.1|20-06-19:8,USA/MA_MGH_00693/2020|MT520290.1|20-04-06:1)545:2,(CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13:1,CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27:3)546:1,(ARG/Cordoba-2858/2020|MW633904.1|20-09-14:6,ARG/Cordoba-1484/2020|MW633909.1|20-09-17:6)547:1)544:1,England/CAMB-74D5B/2020|20-03-19:0)543:2,England/LOND-D53CF/2020|20-04-15:1)542:1,((USA/CA-CZB-1871/2020|MT750377.1|20-04-28:3,USA/CA-CZB-2358/2020|MW036004.1|20-05-13:6)549:1,(Wales/PHWC-1645BF/2020|20-05-06:4,Wales/PHWC-33C88/2020|20-04-17:3)550:2)548:1,(USA/WA-S2724/2020|MT947562.1|20-07-04:0,USA/WA-S2728/2020|MT947566.1|20-07-08:0)551:8,(Scotland/EDB5196/2020|20-05-18:4,Scotland/CVR3185/2020|20-04-28:1)552:1,(England/BRIS-127363/2020|20-04-24:4,England/BRIS-127A40/2020|20-04-17:1)553:2,(Northern_Ireland/NIRE-FB9C1/2020|20-08-13:2,England/MILK-99DE32/2020|20-08-31:5)554:2,(England/CAMB-83A9E/2020|20-04-15:2,England/EXET-136ED9/2020|20-04-22:1)555:1,(England/ALDP-955D39/2020|20-06-12:3,Switzerland/300258/2020|LR898536.1|20-10-01:4)556:1,(England/SHEF-D1D3E/2020|20-04-22:4,England/SHEF-CBE43/2020|20-04-26:2)557:1,(England/CAMC-949688/2020|20-07-27:2,England/SHEF-C3AED/2020|20-07-30:2)558:7,(England/ALDP-90D6AE/2020|20-06-24:6,POL/PL_P12/2020|MT511068.1|20-03-31:2,(England/MILK-ABBCCA/2020|20-10-21:3,England/MILK-ACCF27/2020|20-10-21:2)560:2)559:1,(England/QEUH-99923A/2020|20-08-24:2,England/MILK-825C54/2020|20-07-16:2)561:6,(England/MILK-9E2BDD/2020|20-09-20:2,Northern_Ireland/NIRE-1088C3/2020|20-09-13:3)562:1,(England/MILK-99D755/2020|20-08-31:3,England/MILK-99D764/2020|20-08-31:2)563:11,(England/ALDP-907D09/2020|20-06-22:1,England/MILK-85E3E4/2020|20-07-18:1)564:5,(England/MILK-95862C/2020|20-06-11:1,England/ALDP-94EF88/2020|20-06-16:4)565:4,(England/PHEC-219E0/2020|20-05-01:1,England/LEED-2AA59E/2020|20-04-06:1,(Wales/PHWC-16578B/2020|20-06-07:5,Wales/PHWC-166104/2020|20-05-15:7)567:2,(England/BRIS-125D67/2020|20-03-29:1,England/BRIS-12C841/2020|20-05-12:3)568:1,(England/ALDP-94D8F7/2020|20-06-20:1,England/NOTT-111BFB/2020|20-05-29:1)569:3)566:1,(England/ALDP-95A754/2020|20-06-13:1,England/ALDP-95CEA8/2020|20-06-15:1)570:7,((England/MILK-8664D7/2020|20-07-17:1,England/MILK-993300/2020|20-08-26:3,(England/CAMC-947392/2020|20-07-18:1,England/MILK-977469/2020|20-07-24:4)573:4)572:1,England/MILK-629D13/2020|20-07-05:6)571:1,(England/PORT-2F5752/2020|20-10-13:3,England/QEUH-96A4C3/2020|20-08-13:2)574:8,((USA/VA-DCLS-1073/2020|MT981458.1|20-06:2,USA/VA-DCLS-0120/2020|MT482111.1|20-04:2)576:2,(Wales/PHWC-162751/2020|20-05-27:2,England/ALDP-497D12/2020|20-06-03:4)577:1)575:1,(England/SHEF-C13B7/2020|20-05-19:2,England/SHEF-10B2E79/2020|20-05-16:2)578:1,(England/OXON-AEF9E/2020|20-04-07:2,Wales/PHWC-162E7A/2020|20-05-19:1)579:1,(USA/WI-UW-982/2020|MT846668.1|20-07-21:2,USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21:2)580:3,(USA/FL-QDX-228/2020|MT806770.1|20-04-18:3,USA/VA-DCLS-0920/2020|MT929088.1|20-05:4)581:1,(England/ALDP-71D072/2020|20-07-01:1,England/MILK-9573DB/2020|20-06-10:2)582:2,(England/ALDP-954C6A/2020|20-06-13:1,England/ALDP-A524EB/2020|20-10-07:4,(England/ALDP-9D9104/2020|20-09-18:3,England/CAMC-A40F67/2020|20-10-06:1)584:2,(Scotland/QEUH-A00DF0/2020|20-10-02:2,England/ALDP-9CC5BD/2020|20-09-15:2)585:3,(England/QEUH-9B6EAC/2020|20-09-09:1,England/NORT-2A4CAE/2020|20-09-17:1)586:1,(Northern_Ireland/NIRE-FB3A5/2020|20-08-29:2,Northern_Ireland/NIRE-FB369/2020|20-08-31:1)587:1)583:1,(Wales/ALDP-6C3E72/2020|20-07-01:2,England/ALDP-5A15D0/2020|20-06-14:2)588:1,((England/LEED-2AA4EC/2020|20-04-06:2,England/LEED-2AA394/2020|20-03-31:1)590:2,(England/BRIS-1854318/2020|20-04-28:2,England/BRIS-12E6FA/2020|20-04-20:2)591:1,(England/WSFT-25C13CB/2020|20-04-17:0,England/PORT-2F5D9C/2020|20-06-05:1)592:2)589:1,(Wales/PHWC-16881C/2020|20-04-21:2,Wales/PHWC-3612C/2020|20-04-28:4)593:2,(England/PHEC-20B81/2020|20-04-16:0,England/MILK-992E97/2020|20-08-26:6)594:1,(England/QEUH-95DD9B/2020|20-08-07:2,England/MILK-9570D4/2020|20-06-10:1)595:1,(ITA/APU-POLBA09/2020|MW485806.1|20-08-26:2,DV_IZSPB_236_S50|LR992121.1|20-08-29:0)596:6,(England/SHEF-C184F/2020|20-08-31:5,England/ALDP-9D8FFC/2020|20-09-18:1)597:3,(England/NORT-28B1EA/2020|20-04-18:1,England/NORT-28B28D/2020|20-04-18:1)598:2,((England/ALDP-5D52BE/2020|20-06-18:1,England/ALDP-6FAF24/2020|20-06-29:2)600:1,(England/MILK-B01F25/2020|20-10-23:12,Switzerland/210050/2020|LR882268.1|20-07-19:7)601:3,(England/ALDP-691499/2020|20-07-02:3,England/ALDP-4A2BFC/2020|20-05-22:1)602:1,(England/ALDP-9B5BC4/2020|20-08-28:7,England/ALDP-49F5B8/2020|20-05-22:1)603:1)599:1,(England/MILK-62FD59/2020|20-07-05:3,England/ALDP-90DDC7/2020|20-06-26:3)604:10,(USA/IL-UW-1082/2020|MT929034.1|20-07-27:3,USA/FL-BPHL-1773/2020|MW206588.1|20-07-29:5)605:3,(England/LIVE-9BC33/2020|20-04-21:0,USA/TX-DSHS-0361/2020|MW114997.1|20-06-13:2)606:1,(England/CAMB-1B087F/2020|20-05-04:4,England/PHEC-2223F/2020|20-04-30:3)607:1,(England/ALDP-5A2A49/2020|20-06-14:1,England/ALDP-5A2D6E/2020|20-06-14:3)608:1,(USA/WA-S1407/2020|MT821568.1|20-05-19:4,USA/WA-S1434/2020|MT821707.1|20-05-21:1,(USA/WA-S2598/2020|MT831859.1|20-06-18:1,USA/WA-S1840/2020|MT834024.1|20-05-27:3)610:2,(USA/WA-S1246/2020|MT821587.1|20-05-11:4,USA/WA-S820/2020|MT641503.1|20-04-15:1)611:2)609:1,(England/CAMB-80B43/2020|20-04-11:2,England/CAMB-7666D/2020|20-03-29:2)612:1,(USA/WA-S2573/2020|MT831840.1|20-06-17:0,USA/WA-S2761/2020|MT947580.1|20-07-29:4)613:2,(England/ALDP-9BEB16/2020|20-09-09:1,England/ALDP-A95376/2020|20-10-19:4)614:8,(England/QEUH-A9F5D0/2020|20-10-20:5,England/QEUH-96AEF2/2020|20-08-15:2)615:2,(Scotland/CVR1557/2020|20-04-03:1,Wales/PHWC-34610/2020|20-04-21:1,(Netherlands/NA_436/2020|LR883367.1|20-04-07:1,Netherlands/Friesland_33/2020|LR883315.1|20-04-14:1)617:1)616:2,((England/CAMC-B36516/2020|20-11-05:1,England/CAMC-B362D3/2020|20-11-05:1)619:3,(England/MILK-B3A284/2020|20-11-01:1,England/CAMC-B365AD/2020|20-11-05:1)620:3)618:21,(BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07:1,BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18:2,(AUS/VIC3114/2020|MT972550.1|20-07-06:2,AUS/VIC9664/2020|MW156172.1|20-08-12:2)622:3,(AUS/VIC13094/2020|MW185501.1|20-07-31:1,(AUS/VIC9179/2020|MW153248.1|20-08-21:4,AUS/VIC11646/2020|MW155572.1|20-07-22:1)624:2)623:4)621:1,(England/CAMB-82060/2020|20-04-21:3,England/CAMB-82E1B/2020|20-04-14:1,(covid_hub_pl_ibch_0157|LR991987.1|20-05-19:3,Poland/1/2020|LR899030.1|20-05-20:5)626:4,(England/CAMC-947259/2020|20-07-21:0,England/MILK-9927C9/2020|20-08-27:6)627:8)625:1,(SAU/KFSHRC44/2020|MT820480.1|20-04-11:0,SAU/KAIMRC67/2020|MT820487.1|20-04-01:1)628:2,(Scotland/EDB300/2020|20-03-29:1,Scotland/CVR3194/2020|20-04-28:6)629:1,(England/CAMB-1AA438/2020|20-04-17:0,England/CAMB-1AFB7A/2020|20-05-02:3)630:3,(Wales/PHWC-48212D/2020|20-10-20:2,England/QEUH-9C80B0/2020|20-09-10:2)631:11,(England/MILK-9C4087/2020|20-09-09:1,England/QEUH-96F349/2020|20-08-17:4)632:4,(England/BIRM-5FC3B/2020|20-05-28:5,England/PHEC-13ADF/2020|20-03-13:0)633:2,(England/BIRM-6529A/2020|20-09-30:7,USA/WA-S2831/2020|MW077478.1|20-09-08:13)634:1,(England/NORT-282796/2020|20-03-28:2,England/NORT-2839AE/2020|20-04-01:2)635:1,(England/ALDP-951E49/2020|20-06-10:2,England/ALDP-9557A4/2020|20-06-12:2)636:5,(USA/CA-CZB-2205/2020|MW035956.1|20-05-27:3,USA/CA-CZB-2184/2020|MW035923.1|20-05-26:1)637:2,(IND/GBRC203a/2020|MT669321.1|20-06-07:4,USA/WA-S2809/2020|MW077484.1|20-08-31:10)638:1,(England/QEUH-96E025/2020|20-08-18:2,Scotland/QEUH-94375E/2020|20-08-02:1)639:9,(USA/CA-CZB-4099/2020|MW134393.1|20-08-15:6,USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18:3)640:4,(England/CAMB-7C12A/2020|20-04-13:0,England/CAMB-83348/2020|20-04-15:0)641:5,(Switzerland/220001/2020|LR882220.1|20-07-24:5,England/BIRM-6BECD/2020|20-11-17:12)642:2,(England/CAMC-946506/2020|20-07-15:5,AUS/VIC2173/2020|MT972184.1|20-06-24:3)643:1,(USA/MS-CDC-6546/2020|MW279423.1|20-08-25:1,USA/TX-DSHS-1780/2020|MW425014.1|20-07-07:1)644:2,(England/ALDP-94A63C/2020|20-06-11:5,England/ALDP-52A636/2020|20-06-01:2)645:4,(England/SHEF-D1CE6/2020|20-04-28:4,England/SHEF-C0F96/2020|20-04-15:4)646:1,(England/QEUH-B10460/2020|20-11-02:3,Scotland/QEUH-96D5CD/2020|20-08-20:4)647:4,(ZW-6983|LR963462.1|20-05-01:1,ZW-6978|LR963455.1|20-05-01:1)648:5,(USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02:1,England/MILK-1169960/2021|21-01-25:8)649:11,(England/ALDP-952A44/2020|20-06-21:2,England/QEUH-9B4A22/2020|20-09-07:5)650:2,(Netherlands/NA_359/2020|LR883961.1|20-04-07:1,Netherlands/NA_589/2020|LR883868.1|20-04-05:2)651:2,(England/CAMB-1AE7FF/2020|20-04-29:1,England/CAMB-762D2/2020|20-03-28:4)652:3)427:1)426:2,(England/ALDP-BCA4B0/2020|20-11-23:0,England/ALDP-119985B/2021|21-01-27:3)653:11,(USA/WA-S1222/2020|MT821613.1|20-05-08:1,USA/WA-S1655/2020|MT834136.1|20-05-29:2,(Spain/R60/2020|LR884131.1|20-04-17:3,USA/CA-CZB-5682/2020|MW276261.1|20-07-23:4,(England/MILK-A06194/2020|20-10-01:2,England/CAMC-B32AA2/2020|20-11-05:4)656:7)655:3)654:7,(USA/FHCRC-19442/2020|MW593677.1|20-07-30:4,USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07:3)657:1)28:1)27:1)26:1,(England/CAMB-7772D/2020|20-03-31:3,England/BRIS-12208F/2020|20-03-21:2,(Wales/PHWC-31CB7/2020|20-04-14:3,Wales/PHWC-26D2B/2020|20-03-30:2)659:1)658:3)25:1;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_16_path_mutations.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1235 @@ +sample_id path_from_root +England/BRIS-1853249/2020|20-04-02 (1) > C24034T (2) > C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 (1) > C24034T (2) > +Wales/PHWC-25B04/2020|20-03-24 (1) > C875T (3) > A20637G +Wales/LIVE-A6831/2020|20-03-16 (1) > C875T (3) > T14859C +Scotland/EDB1317/2020|20-04-09 (1) > C7423T (4) > G4207A,T7423C +Scotland/EDB354/2020|20-03-30 (1) > C7423T (4) > A29780C +England/SHEF-BFF8B/2020|20-03-25 (1) > C20270T (5) > C1473T +England/SHEF-BFFC7/2020|20-03-25 (1) > T4949C (8) > G28027T +England/PHEC-1E01E/2020|20-04-03 (1) > T4949C (8) > C22445T +DP0476/2020|LC571003.1|20-02-16 (1) > C29635T (9) > C29592T +DP0191/2020|LC570980.1|20-02-15 (1) > C29635T (9) > A3854G +England/EXET-135818/2020|20-04-11 (1) > C14805T,G26144T (10) > C7703T,T9352C,G27201T +England/LIVE-A5D06/2020|20-03-17 (1) > A10982G (24) > C6681T,G11801A +England/LIVE-A065B/2020|20-05-27 (1) > A10982G (24) > C823T,C8752T,A9741C,C19961T,C26333T,C26408T +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 (1) > A14940G (660) > C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 (1) > A14940G (660) > A26120G +Scotland/GCVR-171160/2020|20-03-26 (1) > A1904G,C8090T,C10789T (661) > A3958G,C5826T,C17074T +England/BRIS-130E2A/2020|20-03-24 (1) > A1904G,C8090T,C10789T (661) > C16658A,C17733T +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 (1) > T514C (662) > C22033A +NED/NB02_13KS/2020|MT457397.1|20-04-29 (1) > T514C (662) > G1607A,A10829G,G12795A,C17410T,A22920T +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 (1) > A12557G,C24904T,A27359G (663) > C11050T +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 (1) > A12557G,C24904T,A27359G (663) > C25916T,G29751T +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 (1) > C25692T (664) > T15867A +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 (1) > C25692T (664) > G10617A,G22225T +England/BRIS-1258A2/2020|20-03-29 (1) > G29032A (665) > C6696T,C9096T,C29754T +England/SHEF-BFEBB/2020|20-03-24 (1) > G29032A (665) > C11747T,T24364G +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 (1) > C10277T (666) > A6313G,T7191C,A7193G +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 (1) > C10277T (666) > G7273A +USA/CA-QDX-33/2020|MT614459.1|20-03-15 (1) > C6312A,C13730T,C23929T,C28311T (674) > C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 (1) > C6312A,C13730T,C23929T,C28311T (674) > C11455T +HKG/HKU-904a/2020|MT365032.1|20-01-30 (1) > C8782T,T28144C (676) > C4158T,C18828T +England/LIVE-9E66F/2020|20-04-10 (1) > C6696T (698) > C7765T,G10256T +Scotland/CVR705/2020|20-03-26 (1) > C6696T (698) > C11001T,G17122T +England/PHEC-1A601/2020|20-03-04 (1) > G1397A,T28688C,G29742T (699) > A19526G +England/PHEC-2275E/2020|20-06-22 (1) > G1397A,T28688C,G29742T (699) > G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +England/LIVE-A4C46/2020|20-03-12 (1) > C20270T (5) > A29683T (6) > G431A,G26754A,C28725T +Scotland/EDB046/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C9996T,T26144G +England/BRIS-12EEB6/2020|20-04-22 (1) > C14805T,G26144T (10) > G28842T (18) > C15240T,C18086T,T23031C +Scotland/EDB199/2020|20-03-26 (1) > C14805T,G26144T (10) > G28842T (18) > C22713T,G26031T +England/CAMB-74A09/2020|20-03-18 (1) > C14805T,G26144T (10) > C23707T (19) > G6981T,G10112T,G22785T +England/ALDP-9EE3AC/2020|20-05-06 (1) > C14805T,G26144T (10) > C23707T (19) > G20991T +England/CAMB-8042A/2020|20-04-10 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > A4015T +England/CAMB-737B8/2020|20-03-30 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > G3971T,G28380T +USA/WA-S885/2020|MT642386.1|20-04-22 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > G7739T,C25904T +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > A5269G,C9943T +USA/WA3-UW1/2020|MT163716.1|20-02-27 (1) > C14805T,G26144T (10) > G5572T (22) > T2446C,C3411T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 (1) > C14805T,G26144T (10) > G5572T (22) > C28311T +England/BRIS-1265AA/2020|20-04-10 (1) > C14805T,G26144T (10) > G13627T,C15540T,A28338G (23) > T9046C,C11779A,C27688T +AUS/NT38/2020|MT641726.1|20 (1) > C14805T,G26144T (10) > G13627T,C15540T,A28338G (23) > G1599T,C3096T,C12781T,G17944T +France/40002VJ/2020|MT470179.1|20-03 (1) > C241T (25) > C14408T (26) > C2416T,G12079C,C23220A +England/CAMB-7772D/2020|20-03-31 (1) > C241T (25) > T241C,G1440A,G2891A (658) > C4668T,C21742T,C25931A +England/BRIS-12208F/2020|20-03-21 (1) > C241T (25) > T241C,G1440A,G2891A (658) > C14585T,C27603T +England/ALDP-52C0FA/2020|20-06-01 (1) > G29711T (667) > C1218T,G27806T (668) > C9870T,C10702T,T23047C +England/LIVE-9D7D6/2020|20-04-15 (1) > G29711T (667) > C1218T,G27806T (668) > C27493T +USA/WI-UW-298/2020|MT706406.1|20-04-13 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T (669) > C7728T,C21637T +USA/WI-UW-314/2020|MT706422.1|20-04-16 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T (669) > G25907T +USA/WI-UW-325/2020|MT706432.1|20-04-24 (1) > G29711T (667) > T2116A (670) > C12880T,C28854T +USA/WI-UW-290/2020|MT706398.1|20-04-08 (1) > G29711T (667) > T2116A (670) > A10070C,G28703C,C28849T +Scotland/CVR3488/2020|20-05-12 (1) > C28854T (671) > C12710T (672) > C10335T,C16428T,G22139C,C27737T +Scotland/CVR780/2020|20-03-27 (1) > C28854T (671) > C12710T (672) > C5997T +Japan/TKYE63557_2020/2020|LC581365.1|20-03 (1) > C28854T (671) > C11752T,C25665T,A27700G,T28854C,T28912C (673) > C26447T +Japan/TKYE64688_2020/2020|LC581375.1|20-03 (1) > C28854T (671) > C11752T,C25665T,A27700G,T28854C,T28912C (673) > T1907G,C4456T,A10471G +MYS/188407/2020|MT372480.1|20-03-18 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T (675) > T25473C +AUS/VIC961/2020|MT451653.1|20-03-27 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T (675) > A9433G,T19035A,T29793C +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 (1) > C8782T,T28144C (676) > A17858G,C18060T (681) > A7966G,A22422G +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 (1) > C8782T,T28144C (676) > A17858G,C18060T (681) > C4776T,C9491T,C17747T,G28086T +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > +USA/COVID20-0008/2020|MT764174.1|20-03-10 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 (1) > G1397A,T28688C,G29742T (699) > A1079C,C9319T,C19862T,T27384C (700) > C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 (1) > G1397A,T28688C,G29742T (699) > A1079C,C9319T,C19862T,T27384C (700) > C6701T,T7225C +AUS/VIC1255/2020|MT451830.1|20-04-11 (1) > G1397A,T28688C,G29742T (699) > C1076T (701) > T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29 (1) > G1397A,T28688C,G29742T (699) > C1076T (701) > A28955T +England/LCST-24D7202/2020|20-06-22 (1) > C20270T (5) > A29683T (6) > A18671G (7) > C4021T,A9963T,T24027C +England/SHEF-BFF21/2020|20-03-25 (1) > C20270T (5) > A29683T (6) > A18671G (7) > +Switzerland/100159/2020|LR884273.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > C16995T +England/LOND-126031F/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > A20511G +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > +Wales/PHWC-285F4/2020|20-04-01 (1) > C14805T,G26144T (10) > T17247C (11) > A7479G,C25572T (14) > G12191T,G16188T,C19524T,C28887T +England/BRIS-130965/2020|20-04-13 (1) > C14805T,G26144T (10) > T17247C (11) > A7479G,C25572T (14) > C10741T,C27498T +Scotland/CVR44/2020|20-03-13 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > G443A +Scotland/CVR839/2020|20-03-27 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > T7816A,C24023T +Scotland/GCVR-170107/2020|20-03-23 (1) > C14805T,G26144T (10) > T17247C (11) > C988T (16) > G1857T,A5570G,A9483G +Scotland/CVR207/2020|20-03-18 (1) > C14805T,G26144T (10) > T17247C (11) > C988T (16) > G12832A +England/NORT-284A9B/2020|20-03-25 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > G28655A,C28657T +Scotland/CVR10/2020|20-03-10 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > T9223C,A21625G +Wales/PHWC-310CA/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > A2480G,A12529G,T14408C,G26144T +Wales/PHWC-31CB7/2020|20-04-14 (1) > C241T (25) > T241C,G1440A,G2891A (658) > G28851T (659) > C9180T,C16466T,G19670A +Wales/PHWC-26D2B/2020|20-03-30 (1) > C241T (25) > T241C,G1440A,G2891A (658) > G28851T (659) > C5183T,G18651T +Spain/H12_46/2020|LR884009.1|20-04-08 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > C7967T,C16694T +Spain/R11/2020|LR884126.1|20-03-06 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > +Spain/R10_33/2020|LR884127.1|20-03-02 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > T25979G +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T (695) > G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T (695) > C6541T,C9988T,T25904C +England/CAMC-C91F38/2020|20-12-11 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > G9802A,G11230T,A16512G,C19951T,G26428T (696) > C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > G9802A,G11230T,A16512G,C19951T,G26428T (696) > C10818T,T11230G,C25702T +Scotland/EDB5629/2020|20-03-24 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > G27870T +Scotland/EDB5040/2020|20-04-02 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > C593T +Scotland/EDB1824/2020|20-04-16 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > C8240T,T8941C,C9438T,C19185T,G27358T +England/ALDP-CB55B4/2020|20-12-20 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C (691) > C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C (691) > G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +USA/WI-UW-06/2020|MT772088.1|20-03-21 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > G16381A,T17877C,G25500T (692) > C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > G16381A,T17877C,G25500T (692) > C25854T +GHA/34927_S20/2020|MT890226.1|20-05-23 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C24370T (693) > C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C24370T (693) > C2306T,C5672T,C5986T,C13515T,G24926T +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T (694) > C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T (694) > A4984T,A7854G,A21062G,A28254C +England/BRIS-123965/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G7042T,G8861T (29) > C5806T,C10450T +England/BRIS-125347/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G7042T,G8861T (29) > +IND/Isolate_9088/2020|MW555597.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4809T (30) > G14245A,G28325A +IND/763/2020|MT577009.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4809T (30) > +England/CAMB-75BD8/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28514T (45) > C18060T +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28514T (45) > T4579A,C5175T,T18552C,C25521T,G27877T +England/ALDP-9ED9F6/2020|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1914A,T16456C (46) > C10681T,G16855T,C26060T,C29614T +England/ALDP-944BD9/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1914A,T16456C (46) > G4399T,G27746T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25665T,G28325T (47) > C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25665T,G28325T (47) > G16075T +USA/WA-S3017/2020|MW474188.1|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T (48) > G4508A,T7884C,C21811T +USA/WA-S2852/2020|MW079820.1|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T (48) > C17795T,G26230T +USA/WI-UW-26/2020|MT706147.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3871T (49) > A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3871T (49) > C19862T +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2939T (50) > C6401T,C18877T,G28882T +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2939T (50) > T11698C,C18322T +USA/IN-QDX-184/2020|MT786818.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A696C (51) > G3871T,T27299C +USA/WI-UW-558/2020|MT750137.1|20-06-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A696C (51) > +AUS/VIC2260/2020|MT972173.1|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G24077T (52) > G14294A,A23746G,T24077A,A29622C +England/EXET-1358BE/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G24077T (52) > A20092G,T28630G +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1997T +USA/WI-UW-1105/2020|MT929055.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T3011C,G22205T,T27869C,T28853G (267) > C1824T,C19718T,C25919T,C29149T +USA/RML-22/2020|MW221270.1|20-08-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T3011C,G22205T,T27869C,T28853G (267) > T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T +England/MILK-9750EF/2020|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G2407C,C2902T +BHR/740704818/2021|MW661071.1|21-01-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T (272) > C1593T,T16138C,C25667T +England/QEUH-E93C6A/2021|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T (272) > A1807G,C9565T,G18670A,C22480T,T23176C,G27916T +Scotland/CVR2931/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1545T,C22879A (273) > T1545C,C8334T,C19089T +Scotland/GCVR-172150/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1545T,C22879A (273) > +England/BRIS-124885/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A11782G,G22203T (274) > T2815C,T6892C +England/BRIS-122C4F/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A11782G,G22203T (274) > G27754T +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G28881A +England/NOTT-10E1B3/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T3952C,C6268T,T15324C +USA/WI-UW-37/2020|MT706158.1|20-03-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G11417T +Scotland/CVR2927/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3831A (359) > A1801G,C9857T,C18568T +Scotland/GCVR-173C30/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3831A (359) > T7441C +England/ALDP-A6CC8C/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C6627T,C25791T,C26270T +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A24862G (394) > T7132C,C8327T,C9112T,C24442T,G25429T +Switzerland/140091/2020|LR824563.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A24862G (394) > T658C,A2655C,C28629T +England/ALDP-49A5AE/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C7834T,C16997T,G25429T (395) > C2983T,G10565A,C17336T +England/ALDP-4A2A77/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C7834T,C16997T,G25429T (395) > +England/BRIS-12755E/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1909T (396) > C9438T,G16647T,C22264T +England/BRIS-12468B/2020|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1909T (396) > T27576C +England/NORW-E9DF7/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2940T (397) > C7765T +Scotland/EDB156/2020|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2940T (397) > C4276T,C26822T,G29227A +Wales/PHWC-27B20/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > T22435C +Wales/PHWC-2624A/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C27476T +USA/UT-08320/2020|MW206019.1|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C26256T,C29668T (400) > A11782G,G27987T,C28292A,G29755T +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C26256T,C29668T (400) > C5184T,C5416T,G8017T +Wales/PHWC-2BF8A/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T26512C (401) > C19011T,C22323T,C26415T +Wales/PHWC-29E43/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T26512C (401) > G9220A +England/LOND-D3534/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25350T (402) > T27280C +England/PHEC-20C24/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25350T (402) > C3096T,G3939A,G8179T +England/CAMB-7D2EA/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T17835C (403) > G26273T,C26408T,C29370T +England/LIVE-A63E5/2020|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T17835C (403) > G680T +Wales/PHWC-260C8/2020|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A25575C (404) > C12242T,C22264T +England/BRIS-12F969/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A25575C (404) > C96T,C4113T,G14857T +England/PHEC-2083F/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C14741T (405) > A187G,A5650G,C25350T +Wales/PHWC-16C6F0/2020|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C14741T (405) > T8944C,G25552T +England/QEUH-B2DD0B/2020|20-11-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A1610G,C9344T,C13335T,C28887T (406) > G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G +England/MILK-A7B0BB/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A1610G,C9344T,C13335T,C28887T (406) > C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T +Wales/PHWC-27461/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C5506T,G14241T (407) > C19374T +Wales/PHWC-29F13/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C5506T,G14241T (407) > C19151T,G23612A +AUS/VIC989/2020|MT451674.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T7438C,C29353T (408) > A26864G,C27630T +AUS/VIC1056/2020|MT451723.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T7438C,C29353T (408) > A21944T +England/LIVE-A65EF/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G14580T (412) > G10523C +Wales/PHWC-2B7CE/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G14580T (412) > C9857T,G28903C +IND/GBRC238b/2020|MT676367.1|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T (413) > T18877C,C22444T,C28887T,T29750C +IND/GBRC209a/2020|MT664202.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T (413) > G25563T +Scotland/GCVR-1725BE/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1884T,T26497C (414) > C6730T,G28001T +Scotland/CVR30/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1884T,T26497C (414) > +IND/GBRC99/2020|MT509504.1|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G4866T,C14425A (415) > A21511G +IND/GBRC31/2020|MT467247.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G4866T,C14425A (415) > C3737T,C12710T,T21890C +AUS/VIC1239/2020|MT451821.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6723T,T26094C (416) > G28476T +AUS/VIC1282/2020|MW153048.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6723T,T26094C (416) > G6650T,T7034C,T18974G +IND/GBRC128/2020|MT539172.1|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4084T (417) > G5572T +IND/GBRC123/2020|MT539176.1|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4084T (417) > G5194T,C22326T +POL/PL_MCB_32/2020|MW273814.1|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A544G,C17104T (418) > C1594T,A3090T,C23635T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A544G,C17104T (418) > +England/CAMB-7BED9/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20275A (419) > A6672G,C10641T +Netherlands/NA_302/2020|LR878041.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20275A (419) > A3058G +England/NORT-289814/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C13862T,C28836T (420) > C9165T,T21033C +England/ALDP-9ED57A/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C13862T,C28836T (420) > A23796G,G23824T,C29095T +USA/WI-UW-1385/2020|MW035549.1|20-09-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G2282A,T9742C,C17639T (421) > C18508T,G19174T,G24883T,C26370T,C28868T +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G2282A,T9742C,C17639T (421) > G20160T +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C28603T,G28899T (422) > C10279T,C12132T,T16077C,T20401C +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C28603T,G28899T (422) > A2104G,T21656C,G25244C +Scotland/CVR129/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C23422T,T23849C,C29686T (423) > G29227A +Scotland/CVR52/2020|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C23422T,T23849C,C29686T (423) > C25667T +England/ALDP-94D8D9/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3338T,C3511T,A22301G,G29508A (424) > C19698T,C27393T +England/ALDP-9442D4/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3338T,C3511T,A22301G,G29508A (424) > T3616A,T23686C,T27634C +Northern_Ireland/NIRE-1022CB/2020|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G29422T (425) > C1997T,C28708T +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G29422T (425) > C2509T,G12311T,C12357T,C20148T,C27925A +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > T241C +England/ALDP-BCA4B0/2020|20-11-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T (653) > +England/ALDP-119985B/2021|21-01-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T (653) > G7319A,G26526T,C27213T +USA/WA-S1222/2020|MT821613.1|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > C186T +USA/WA-S1655/2020|MT834136.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > C15240T,C26607T +USA/FHCRC-19442/2020|MW593677.1|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20980A (657) > T5028C,C8818T,G9398T,C15952T +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20980A (657) > A1005G,T6407A,G20476T +USA/WA-S4100/2021|MW555971.1|21-01-18 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T (688) > G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T (688) > C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +England/CAMB-76515/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C16289T (32) > T25429G +England/CAMB-1AE294/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C16289T (32) > T4587A,G12833A,C15824T +England/LEED-2A8D10/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C13730T (33) > C25916T +England/CAMB-1AC6F4/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C13730T (33) > C6558T,G9130T,G26529T +England/CAMB-7EBDF/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A13433G,C18377T +Scotland/CVR2381/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > C1848T +Scotland/CVR2197/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > G21776T +Scotland/CVR3417/2020|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > A28841G (39) > G3689A,T11660A,C29743T +Scotland/CVR1519/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > A28841G (39) > A6441G +England/MILK-93B73B/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1141T (40) > C3817T,C25160T,C28099T +England/MILK-9589F6/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1141T (40) > C7488T,C14396T +England/BRIS-128441/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C28045T (41) > G10324T,C22713T +England/CAMB-7C39D/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C28045T (41) > G2885T,G26458C,C29253T +England/NORW-E8C37/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C3602T,A24232G (42) > C11460T +England/NORW-E75A6/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C3602T,A24232G (42) > T3602C,C6538T,T21206G +Wales/PHWC-3122E/2020|20-04-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1589A,G29474T (43) > A22457G +Wales/PHWC-1645EC/2020|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1589A,G29474T (43) > A11438G +England/ALDP-50085E/2020|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G21538T (44) > T11164G,G15406T,G22332A,G27583T,G29427T +England/PHEC-127E8/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G21538T (44) > +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T18877C,C25904T +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1683C,C22224T,C28367T +England/MILK-9A8AB8/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > C222T +England/CAMC-106415F/2021|21-01-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T (271) > C12116T,C12459T,A23503T,A23989T,C24023T,G28899A +England/CAMC-C470F2/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T (271) > C6794T,C8814T,C13452T +USA/WI-UW-1046/2020|MT928999.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15732T,T19143C (276) > G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15732T,T19143C (276) > G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T +Scotland/CVR3054/2020|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15438T (304) > T6673C,C28887T +England/MILK-95698F/2020|20-06-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15438T (304) > G3340T,T7258C,T8941C,G12911A +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A +USA/AK-PHL414/2020|MT946886.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C2143T,C29370G (307) > G26062T,C29119T +USA/AK-PHL689/2020|MW173160.1|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C2143T,C29370G (307) > C6336T,G16853T,A21794G,G21800T,G25244T +England/MILK-974596/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C1625T,C19170T,A20829G,A25255G,C26469T,G27666T +England/NORW-ECD21/2020|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C12915T,G21255T (311) > C1684T,C6593T,G14829T,C23525T,G29744A +England/NORW-E755B/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C12915T,G21255T (311) > A4198C,C7011T +England/MILK-978626/2020|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T9697C (312) > C147T,C12473T,C19602T,C23266T,A29517G +England/MILK-9A565D/2020|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T9697C (312) > A2140G,C3015T,C9165T,C10448T,C11866T,T28813G +USA/NM-QDX-264/2020|MT806796.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C4582T (313) > G6404T,C17999T,T25123C,G28378T +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C4582T (313) > C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A +Scotland/EDB1198/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T17126C (314) > T5161A,C25046T,G29742T +England/PHEC-20A84/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T17126C (314) > C28201T,C28546A +Scotland/EDB6324/2020|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C6472T,C7815T (315) > G22363T,T23406C,T26972C +Scotland/EDB4579/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C6472T,C7815T (315) > G13397A,C21682T +Wales/PHWC-360E3/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C18904T,G25606T (342) > A3260G,T7185C,G21867T,G25266T,A26513G,G29462C +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C18904T,G25606T (342) > C21646T,C22208T +Netherlands/NA_289/2020|LR878031.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T10561C (343) > C12085T,A23173G,C28844T +France/10065EE/2020|MT470176.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T10561C (343) > C26895T,C29013T +IND/nimh-19510/2020|MW181843.1|20-05-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C3634T,C28854T (344) > C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T +IND/GBRC174b/2020|MT607610.1|20-06-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C3634T,C28854T (344) > C22444T +France/10036BG/2020|MT470106.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G28202A (345) > +IHUCOVID-0033|LR794417.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G28202A (345) > G16089A,G24794T +England/PORT-2D0D4C/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C25433T (346) > A10781G,A16169G,G21600T,C29546T +Switzerland/100210/2020|LR884314.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C25433T (346) > C1191A,G15260A +POL/PL_MCB_72/2020|MW273854.1|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A7031G,G13617T (347) > A2848G,C9286T,C23202T +POL/PL_MCB_97/2020|MW273879.1|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A7031G,G13617T (347) > C2570T +Scotland/CVR3629/2020|20-05-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > G18380T +Scotland/QEUH-5456F9/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > C6606T +England/QEUH-9CE80D/2020|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T (349) > A21018G,C21302T,C21304A,G21305A,C27167T,C28708T +England/QEUH-990752/2020|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T (349) > +AUS/VIC38/2020|MT450953.1|20-03-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C15277T (350) > C10350T +IHUCOVID-0133|LR794459.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C15277T (350) > C8394T +England/PHEC-1555C0/2021|21-01-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T (351) > C673T,A11430G,C21846T,C22995A,C25504G,G25894A +England/MILK-E6578E/2020|20-12-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T (351) > C5184T,A9204G,A10248G,C19975A +England/CAMC-106052A/2021|21-01-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T (352) > C14184T,A15402G,C23170T,C24138A,C24381T,T25303C +England/LOND-12F6633/2020|20-12-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T (352) > G9425T,C21997T,G24116A,C29200T +Switzerland/240009/2020|LR880588.1|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A (353) > +Switzerland/240084/2020|LR880634.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A (353) > C815T,C8752T,C25904T,G27147T +USA/MN67-MDH67/2020|MT911566.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > G11596T (355) > +Netherlands/NA_292/2020|LR878032.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > G11596T (355) > G20568A +Switzerland/101166/2020|LR824397.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C17118T +PER/covper020/2020|MW030251.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C15277T,A21917G (357) > T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T +PER/covper091/2020|MW030227.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C15277T,A21917G (357) > +England/CAMB-737D6/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > A2775G,G4255T,C13568T,A20355G (358) > C6861T +England/CAMB-1B08D9/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > A2775G,G4255T,C13568T,A20355G (358) > C14235T,G25699T +Wales/PHWC-16930B/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C29200T (399) > C3264T +Wales/PHWC-34285/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C29200T (399) > A6616G,C12915T +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C16017T,T27212C,G27561T (410) > C16393T,G18546T,C24718A,C27600T,C29421T +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C16017T,T27212C,G27561T (410) > A10770G +England/BRIS-12B2BD/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C19066A (411) > A1699G,C6361T,C25797T,C27577T,C27641T +England/BRIS-128DCE/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C19066A (411) > C12213T +England/CAMC-947875/2020|20-07-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25699T,G28884T,C28896T,C29738T +Spain/R60/2020|LR884131.1|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > G3849A,G27506T,C29203T +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > A14424G,G18880T,C28057T,C29774T +Scotland/CVR3062/2020|20-04-24 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C25714T,C26029A (686) > G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C25714T,C26029A (686) > C15274T +England/OXON-B0922/2020|20-03-28 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C28311T (687) > C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C28311T (687) > G17632A +England/CAMB-1AC7D3/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > A13863G +England/MILK-BB0F16/2020|20-11-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T (37) > G7675T,C12406T +England/CAMC-BBDD4C/2020|20-11-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T (37) > C2939T,C5934T,C21635T,T27988C,C28775T +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C815T,C3411T,T10795C,A17521G,C18452T +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > C23551T,G27084T +England/LEED-2A91D7/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > C23453T (60) > T1778C,C6762T,C28849T +England/LEED-2A87C7/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > C23453T (60) > G3230A +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24381T (62) > +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24381T (62) > C23718T +USA/VA-DCLS-0676/2020|MT911804.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/MI-QDX-476/2020|MW064508.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/WA-UW-4105/2020|MT358746.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A13512T,G13513T,G13514A (64) > T1333A,T1334A +USA/WA-UW-2220/2020|MT345839.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A13512T,G13513T,G13514A (64) > T1059C,C15763T,T25563G +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1298A (65) > G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1298A (65) > C344T,C5090T,C10228T,A22001G +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20037C (66) > G2900T,C23179T +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20037C (66) > G28073T +England/CAMB-7A7DF/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > G8578A +Netherlands/NA_18/2020|LR878352.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > C23506T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > A6035G +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2668T (69) > C1912T,G2867T,C12651T +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2668T (69) > T18240C,T28009C +England/LIVE-DAB556/2020|20-10-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T (78) > G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C +England/PHEC-14DE93/2020|20-11-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T (78) > G204T,C6286T,C21614T,C22227T,T26424C +Wales/PHWC-1658A6/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T,C24621T (79) > G2830A,A2903G,C7869T +Wales/PHWC-2E0A2/2020|20-04-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T,C24621T (79) > C18568T +England/ALDP-952A53/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18744T,A18978G,A29391G (80) > C1190T,G25273T,C29249T +England/ALDP-95A745/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18744T,A18978G,A29391G (80) > G11708A,C14724T,C17550T +Scotland/EDB3137/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > G25494T,C29719T +Scotland/EDB2810/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > C19113T,T21752C +USA/CA-QDX-434/2020|MW064457.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A2018G,C18029T (82) > C8697T,T18029C +USA/UT-02231/2020|MT444626.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A2018G,C18029T (82) > C2445T,G20890A,G25947T,G28373T,G28374T +USA/WA-S2850/2020|MW079819.1|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T (83) > A4935G,T26510C,G29736T,C29762G +USA/WA-S2746/2020|MT947577.1|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T (83) > +USA/WI-UW-879/2020|MT846567.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G19542T,C23551T,C28821A (84) > G3403T,G13201T,C26527T +USA/UT-05590/2020|MW084605.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G19542T,C23551T,C28821A (84) > A2151G +Netherlands/NA_588/2020|LR883860.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18281A,A20755C,G25784T (85) > A20742G +Netherlands/NA_583/2020|LR883819.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18281A,A20755C,G25784T (85) > C4113T,C6555T,C25731T +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1738T,C11916T,C28087T (105) > G3242A,T11449C,T14508C,A26126T,T28087C +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1738T,C11916T,C28087T (105) > G9928T,A20716G,A24383G,G25538T,G28123T +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T (106) > C676T,A3536G,C29370G +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T (106) > +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C379A (107) > C10369T,C12115T,G12202T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C379A (107) > A20503G +USA/WA-UW-2108/2020|MT345811.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G3259T,T27964C +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G14580A,T19527C,A19821G,G22346T,C28099T,C29722T +USA/WI-UW-1119/2020|MT929068.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A19899T,A21464G (121) > +USA/WI-UW-1005/2020|MT846691.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A19899T,A21464G (121) > G4232T,C9120T,A18500G,G22093A,T23296C,G25444A +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25777T,C29614T (122) > G23311T,G24977C +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25777T,C29614T (122) > G25471C,G28899T,G29779T +England/CAMB-7771E/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4586T +England/CAMB-7DC91/2020|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4321T +USA/WI-UW-1092/2020|MT929042.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7528T (124) > G271T,T13270C,C28093T,C28890T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7528T (124) > G8213A +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C775T,C27923T,G28975T (125) > C23683T +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C775T,C27923T,G28975T (125) > C3044T,C9979T,C10369T,G19072T +USA/WA-QDX-235/2020|MT806806.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12557C (126) > A23534T +USA/WA-S1266/2020|MT821676.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12557C (126) > T4441C,G6125A,C17639T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1917T (127) > C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1917T (127) > G29431T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C23191T (128) > A25910C +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C23191T (128) > C9907T,C17125T,T18144C +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G15906T (129) > C5548T,C28153T +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G15906T (129) > T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28893T (141) > G22021A,C22998T,G23501T +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28893T (141) > T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T9070C (142) > C20325T +USA/CA-CZB0731/2020|MT385450.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T9070C (142) > G9049T,T10960C +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3892T (146) > G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3892T (146) > G20062T +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G (147) > G2272A,C7267T,G21193T +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G (147) > A5368G,C14220T,G21193T,C29363T +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16260T,C28821A (148) > C5979T,A9337G,C18695T +USA/IL-UW-385/2020|MT772536.1|20-05-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16260T,C28821A (148) > C12525T,G21604T,C25728T,G28378T +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C20555T,C21772T (149) > A6414G,A22101T,G24872T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C20555T,C21772T (149) > C16428T +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > C3044T +USA/WA-UW-2008/2020|MT326031.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > G4975T,T29194C +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20049C,C21627A,C23655T (151) > C11102T,A12174G +USA/UT-03041/2020|MW053962.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20049C,C21627A,C23655T (151) > C22295T,C22323T +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > C13761T +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > A26864T +USA/WA-UW-6327/2020|MT412324.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C26625T (153) > C5240G +USA/WA-UW-3832/2020|MT358685.1|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C26625T (153) > C3141A,C17766T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27847T (154) > A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27847T (154) > C6628T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > C18029T +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > G26828A,C28005T +USA/WA-S2725/2020|MT947550.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C335T,T16425G (156) > G248T,T4138G,C9120T,A12197C,C15951T,G16425T,G22918T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C335T,T16425G (156) > G526C +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T (157) > C1912T,C21058T,G21468T,G25681A,C27603T +USA/WI-UW-994/2020|MT846680.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T (157) > +England/BRIS-128CA3/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > C4586T,C29738T +England/BRIS-12B1CF/2020|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > C7843T,C9438T,T15254C,T16062C +USA/WI-UW-491/2020|MT750074.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T (160) > C2003T,T22825C +USA/WI-UW-522/2020|MT750102.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T (160) > +USA/DC-HP00089/2020|MT509482.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11919T (161) > C9510T +USA/UT-03817/2020|MT873871.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11919T (161) > A13440G,C21998T +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1463A,G7557A,C8818T (162) > C3264T,G21204T +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1463A,G7557A,C8818T (162) > A20284G,C22477T,C23604T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5183T (163) > G28878T +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5183T (163) > A361G,C27596T +USA/MI-QDX-620/2020|MW064645.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25976A (164) > G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25976A (164) > C18981T +England/BRIS-12D9F2/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A20262G +England/BRIS-12B156/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A13707G +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25572T (166) > G29747T +AUS/VIC1161/2020|MT451779.1|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25572T (166) > C18744T,C29284T +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16762T (167) > G4105A,C4878T,G10759T,G18803T,A24478T,C29296T +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16762T (167) > A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T +England/OXON-B15A5/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G29291A (168) > C6627T,A11740T,G18984T,C24023T +England/BRIS-129D72/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G29291A (168) > C1593T,C10440T +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A27821G (169) > C2878T,G3146A +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A27821G (169) > G7405T,G11113A,C12225T,G25437T,C25516T +USA/VA-DCLS-1282/2020|MW067700.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,A28715T (170) > C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T +USA/COVID20-1144/2020|MW067817.1|20-07-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,A28715T (170) > T25577G +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T (171) > G26730T +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T (171) > C5140T,G29290A +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1887T (172) > G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1887T (172) > A27979T +Wales/PHWC-1662B6/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C829T,G28371T (173) > G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A +Wales/PHWC-26B12/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C829T,G28371T (173) > +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10851T (174) > T3037C +USA/CT-UW-4372/2020|MT345874.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10851T (174) > C3768T,C25584T +England/BRIS-12BF3E/2020|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5312T,G27852T (175) > G4960T,C6633T,T10732C,T20285G,C28005T +England/BRIS-12DF1E/2020|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5312T,G27852T (175) > A5452G,C21846T,G28337A,G28378T +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A8252G (176) > C8637T,C9360T,G11540T,A23299G,G25311T,G29745T +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A8252G (176) > G15193A,C25626G +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G840A,C19032T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G12160T +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T (178) > +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T (178) > C9996T,C27498T,G28362C +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T (179) > C1060T,C2358T,C4543T,C9226T,C22227T,T24326C,T25510A,T29171C,G29511T +USA/VA-DCLS-1517/2020|MW197475.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T (179) > A10912G,C12733T +USA/WI-UW-1268/2020|MW035438.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C475T,C5986T,A28389T (180) > C9491T,C12754T,G15100T,C15154T,C20970T,C28657T +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C475T,C5986T,A28389T (180) > C775T,C2488T +Northern_Ireland/NIRE-1021DD/2020|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G20709T (181) > A6360G +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G20709T (181) > C4002T,G17338T,A21080C,G22104T +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3231T,A12850G,C21364T,A23064C,C28890T (182) > T16752G,C23064A +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3231T,A12850G,C21364T,A23064C,C28890T (182) > C823T,A9397G,A23362T,G26654T,G29140A +Scotland/EDB6146/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18213T,A18818G (183) > T7814C,C11339T,A21137G +Scotland/EDB6052/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18213T,A18818G (183) > +England/CAMB-7FBCF/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A12556G +England/CAMB-784BC/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A13852G +England/PHEC-15A73/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25731T,C29625T (185) > C7735T,C11757T,C18501T +USA/CA-QDX-796/2020|MW064788.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25731T,C29625T (185) > C16329T,C23536T,G27906T +B90|LR898037.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A21360C +O9|LR963074.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A1925C,C5796T +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A24129G (187) > G1325T,A6351C,C12741T +USA/WI-UW-738/2020|MT772509.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A24129G (187) > T3049C,G4972A +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,A538G,T9107C (188) > T4324G,C23029T,T26543A,A28254G +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,A538G,T9107C (188) > G23426C,A26070G +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > T5674C,C8290T +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > C466T,A17691G +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G7295T (190) > C28290T +England/CAMC-946515/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G7295T (190) > C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G26233T,C27881T (192) > +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G26233T,C27881T (192) > A16766G,T28250G,G28681A +USA/WI-UW-249/2020|MT706376.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T15366C (199) > C8016T,G28903T +USA/WI-UW-84/2020|MT706205.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T15366C (199) > C18481T,G25687A,C29296T +USA/VA-DCLS-0593/2020|MT951960.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C10712T (200) > T25304C,C28890T +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C10712T (200) > T9708C +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C16616T,C26885T,C27603T,C28887T (201) > C7267T,A25201G,C29719T,C29774T +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C16616T,C26885T,C27603T,C28887T (201) > A7209G,C8950T,T17262C,T22645C,T29010C +England/PHEC-1C872/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C2453T,C11102T +England/BRIS-130015/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C6361T +USA/UT-04888/2020|MW084559.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > A716G (203) > G4960T,G21604T +USA/UT-04282/2020|MW084509.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > A716G (203) > C10456T,G19816T,G25494T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G10631T (204) > +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G10631T (204) > G8131T +Wales/PHWC-15DFD9/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C19884T (205) > G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T +Wales/PHWC-2AF12/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C19884T (205) > C26447A +England/CAMC-B533A0/2020|20-11-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C875T,A10904G,G25249T,C28854T (206) > C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C +England/MILK-9781E9/2020|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C875T,A10904G,G25249T,C28854T (206) > C1150T,C6525T,C13274T,C18555T,G19962C,C24378T +321398|LR962930.1|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > C22208T +England/QEUH-B8053B/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > G22225T +IHUCOVID-0441|LR794655.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C6401T,C13458T,C20946T (208) > T2578C,C13105T +IHUCOVID-0428|LR794641.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C6401T,C13458T,C20946T (208) > T10480C +USA/WA-S4490/2021|MW648014.1|21-01-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G (209) > T17607C,G20396A +USA/WA-S3458/2020|MW494078.1|20-12-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G (209) > C3535T +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +Switzerland/100363/2020|LR884411.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +USA/VA-DCLS-0229/2020|MT558657.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G28086T (249) > C10582T,C11747T,G25459T,G25555T +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G28086T (249) > C27416T +Scotland/CVR3970/2020|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T8296C,C12076T,G28690T,C28854T (250) > G19846A,G20060T,C22227T,G22332T +England/MILK-A7D5AB/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T8296C,C12076T,G28690T,C28854T (250) > C1929T,C3777T,G8102T,C26165T,C26681T,G28916A +USA/UT-01683/2020|MT536956.1|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A6512C (251) > G370T,A3841T +USA/UT-03892/2020|MT711875.1|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A6512C (251) > C683T +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G10793T (252) > C29311T +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G10793T (252) > G21724T,G25186A +USA/WA-S1281/2020|MT821642.1|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A2161G,C16376T (253) > G11417T +USA/WA-S2367/2020|MT831837.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A2161G,C16376T (253) > C5758T,T18453C,A28901G +USA/VA-DCLS-0804/2020|MT925987.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1918C,C6402T,C8320T,C12171T (254) > G28079T,G29540A +USA/VA-DCLS-1454/2020|MW067779.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1918C,C6402T,C8320T,C12171T (254) > G9190T,A11782G,G21893A,G26937A +England/NORW-E7EBA/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C10507T (255) > A476G,A16638G,G17893T +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C10507T (255) > C1403T,G7798T +USA/WI-UW-413/2020|MT772562.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C5884T,T9195C +USA/WI-UW-288/2020|MT706396.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C21855T +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T (257) > C7162T,G29745A +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T (257) > +England/MILK-99DB3B/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1154G,G29474T (258) > T5785A,G15705A,G25687T,G27598T +England/ALDP-5D3DEC/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1154G,G29474T (258) > +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > C1420T +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > G15982T,G24914T +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > C10741T +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A11246T,A23949G,C29013T (266) > C9967T +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A11246T,A23949G,C29013T (266) > C5392T,C18654T,C19983T,G25177T +England/MILK-9C3D45/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > G2407T,G11761T (270) > C11494T,C20468T +England/QEUH-9C7EA8/2020|20-09-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > G2407T,G11761T (270) > T2924C +Scotland/EDB3341/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G27987T (278) > +Scotland/EDB6880/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G27987T (278) > G6461T,C17550T,C24865T +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T24076C (279) > G7393T,C27804T +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T24076C (279) > C390T,A9984C,A15250G,G15253A,G18412T +England/ALDP-B252AA/2020|20-11-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C18486T,T22162C (280) > C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C18486T,T22162C (280) > C4898T,A11934T,G23868T +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G16741A (281) > G3259T,C7720T,G11146T,G22992T,G24781T,C25584T +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G16741A (281) > C1060T,C8334T,T21000C +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T (282) > G27506T +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T (282) > G23126T,G25775T +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G1135T (283) > G1148T,G28109T +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G1135T (283) > G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T +England/LOND-D5444/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G7798T (284) > C12789T +Scotland/CVR3238/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G7798T (284) > G22992T +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > A4143G,C6627T,C15960T,T19341C,A27834T,C28724T +Scotland/EDB3662/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T5507A (287) > A19855G +England/ALDP-6FB8FB/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T5507A (287) > C335T,C9024T,G15906T,C21614T +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4596A,G19086T (288) > C23114T +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4596A,G19086T (288) > G9111A,C13517T,C17639T,A20649T +England/LIVE-A00F3/2020|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C8683T (289) > C6336T,C12672T,C13335T,G26173T +England/QEUH-544733/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C8683T (289) > C7564T,C12400T +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C11575T (290) > G6884A,C13487T,A16840C,C19029T,T22222C,C28115T +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C11575T (290) > A1291G,A2342G,A7291G,T7645C,C7768T +England/MILK-654007/2020|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1714T (291) > C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C +England/OXON-B1781/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1714T (291) > C27213T +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C28887T (292) > G1843A,C3828T,C12880T,C19386T,G25252T +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C28887T (292) > C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T +Switzerland/220021/2020|LR882232.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G11842A,A12759G,G18292T (296) > A2679G,C11767T +England/QEUH-96E08F/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G11842A,A12759G,G18292T (296) > G11230T,G13459T,G26450T +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > C24258T +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > +England/MILK-977645/2020|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G25049T (298) > C3695T,C18744T +England/CAMC-B325A1/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G25049T (298) > G5504A,T25570C,C27303A,C28697T +England/CAMC-B34141/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C29200T,C29451T (299) > G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T +England/MILK-A795AF/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C29200T,C29451T (299) > C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T (300) > C3397T,C18591T +England/PHEC-14F392/2020|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T (300) > G3527A,T11008C,C13059T,A26594T +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1191T,C9521A,G29422T,A29567G (301) > C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1191T,C9521A,G29422T,A29567G (301) > C24904T,A26986T +USA/WI-UW-1288/2020|MW035458.1|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G2258A,A6441G,C8140T,A9204G,C29445T (302) > C884T +USA/WA-S2808/2020|MW077495.1|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G2258A,A6441G,C8140T,A9204G,C29445T (302) > A19137T,C19366T,G29384T +England/CAMC-94C02D/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > C27371T +England/MILK-95DBDD/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > A20667G +England/CAMB-79ECC/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > G21778A,T28854C (306) > +England/PHEC-224A2/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > G21778A,T28854C (306) > C9979T,G21853T,G29195T,C29272T +Switzerland/310363/2020|LR898676.1|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > G542A,A4372C,C10277T,G14268A,G29747T +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > G12550A,C20740A (340) > C6628T,C18483T +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > G12550A,C20740A (340) > C17977T,G28975T +England/PHEC-152C73/2020|20-11-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C21682T +Scotland/QEUH-96B4E0/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T12226C (364) > C3093T,C11102T,C18555T +England/MILK-9AA782/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T12226C (364) > C16362T,C19164T,G21786T,C24904T +Scotland/QEUH-9D11C0/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T (365) > C24334T +England/QEUH-A0077A/2020|20-10-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T (365) > C6027T,T10977C,A25327G +England/ALDP-AA0ED1/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C445T,G28079T +England/QEUH-A4CF6B/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C4534T,C5544T +Switzerland/270068/2020|LR882987.1|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T (381) > G17058T +Switzerland/332169/2020|LR898966.1|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T (381) > G21830T,C27881T +England/MILK-ABB8D5/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C28310A (385) > C9857A,A28304T +England/NORT-2884A8/2020|20-11-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C28310A (385) > C6525T,C10376T,G17032A,C23557T,C24106T +England/QEUH-AD0DDB/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T (393) > G14187A,A25948T,C29274T +Wales/MILK-9E3240/2020|20-09-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T (393) > A9409G,T29604C +GRC/202_32984/2020|MT459870.1|20-03-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +GRC/208_33922/2020|MT459876.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +England/PORT-2D3B4F/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C17410T,C18788T,G21830C,C27688T,G29742T +England/EXET-136EE8/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C4784T,C15720T,C23664T +England/PHEC-215FB/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18115T (447) > A5855G,C18110T,A27277G +England/PHEC-1B7C1/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18115T (447) > +Switzerland/120182/2020|LR860799.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C27046T (448) > G13897T,C24621T,T26038C,G26550A,T27046C +England/ALDP-9545BA/2020|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C27046T (448) > T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C +England/ALDP-651C9D/2020|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > C3698T,A28765T +Scotland/CVR3919/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > A22330G +England/ALDP-9558ED/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,C23854T,G25972A,G27842T (450) > G2398A +England/NORT-286255/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,C23854T,G25972A,G27842T (450) > C5000T,C13883T,C18395T +England/BRIS-12F78D/2020|20-03-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C25584A +Switzerland/100802/2020|LR824314.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C8389T,C29708T +England/NORT-282972/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > +England/CAMB-80554/2020|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > T3745C +PHL/UPMNIH_C1/2020|MW243995.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21597T,C29144T (453) > C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T +PHL/COVID-6009/2020|MT919790.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21597T,C29144T (453) > C3736T,T10771C,C13051T,C26305T +England/PHEC-20E4C/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > C7200T,C8290T +England/NORT-283B7B/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > T28118C,G29227A +England/ALDP-95665B/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9430T (455) > G571A,G9575A,C10074T +England/CAMB-7767B/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9430T (455) > C23802T,C28045T +England/CAMC-94328A/2020|20-07-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +England/CAMC-9424A3/2020|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T (457) > +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T (457) > G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T +England/MILK-A79D10/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T (458) > C4113T,T17214C,C19324A,G28044T +England/PHEC-148F95/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T (458) > C2644T,C9319T,G13348T,C19113A +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C2842T,C18570T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C17125T +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5539A,G21468A (460) > T1937C,A15820G,T22441G +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5539A,G21468A (460) > C6578T,C16049T,G19872C,C26768T +USA/VA-DCLS-1485/2020|MW205988.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C936T,G3259T (461) > C8326T,G21641T,C26681T +USA/VA-DCLS-1212/2020|MW067767.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C936T,G3259T (461) > A20860G,C28087T +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C673T (462) > C379T,T4125C,C14220T,T25479A +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C673T (462) > +Switzerland/250060/2020|LR881882.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G9130T,T27319C,G28487A,C28868T (463) > G1186A,C3738T,C16111T,G29706T +England/QEUH-A77F0D/2020|20-10-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G9130T,T27319C,G28487A,C28868T (463) > C6091T,G9389A,G12845A,C18713T,G24095T,G25249T +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G443A,G28378T (464) > C21614T,C21855T,T23042C +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G443A,G28378T (464) > T6579C +England/OXON-AEBC7/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > C9430T +England/QEUH-96E27A/2020|20-08-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T (467) > C936T,G25785T,G28857T +England/MILK-74C001/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T (467) > C21789T,G29779T +England/LOND-D4C6B/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A8681G,C10369T +Wales/PHWC-164485/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A16653G +England/ALDP-5C701F/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T (469) > T1863C,T19983C +England/ALDP-51F142/2020|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T (469) > +England/ALDP-955FAC/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,C27673T (470) > A2130T,C11572T,C19961T,G20006T,C25207T +England/ALDP-49E391/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,C27673T (470) > T26260G +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6781T,C11916T,C19185T (471) > A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6781T,C11916T,C19185T (471) > A16920G,G25906T +England/LOND-126DFA5/2020|20-12-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T (472) > C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T +Wales/PHWC-4846A4/2020|20-10-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T (472) > C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T +Northern_Ireland/NIRE-10677D/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > G18148A +Northern_Ireland/NIRE-106740/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > C11259T,C26681T +England/SHEF-C9FBB/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C26447T (474) > C1190T,A25410C,C25831T,T26447C +England/LOND-D6531/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C26447T (474) > C2710T,T2872C,C3041A +England/MILK-9705F4/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > C15045T +England/ALDP-9B6440/2020|20-08-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > +Scotland/EDB6515/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > +England/QEUH-AD487C/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T772C,A2869G,C10868T,G15652T,C29095T (483) > C186T,C12025T,C28819T +England/QEUH-9B7B2C/2020|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T772C,A2869G,C10868T,G15652T,C29095T (483) > T14313C,G23438T +Switzerland/250070/2020|LR881870.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11782G,T21570G,T25473C (484) > C512T,T28297C +England/QEUH-9B5344/2020|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11782G,T21570G,T25473C (484) > C27641T,G28913T +England/ALDP-6839B9/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T (485) > A27691T +England/ALDP-6BAB59/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T (485) > C11620T,C22993T +FRA/Env-Di/2020|MT709105.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1427T (486) > G3419A,G3871T,C13517T +AUS/VIC1786/2020|MT612326.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1427T (486) > C6195T,C10969T,T17568C,G20679T,T28098C,C29722T +England/CAMB-7620F/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4876T,T12809C +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4795T,C29171T +England/PHEC-1DF03/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C18568T,G24348T +England/CAMB-1AB21F/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C6385T,C12880T +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > T28010A,T28127C +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > C18652T +England/QEUH-9DE381/2020|20-09-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3323T,C10369T,G18674A (491) > C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G +England/QEUH-95E7D8/2020|20-08-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3323T,C10369T,G18674A (491) > C14177T,C25553T,C28121T +England/NOTT-111E3E/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C (492) > G199T,C9474T,C17163T,G25186T,G29688T +England/NOTT-111117/2020|20-05-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C (492) > +England/ALDP-68EFBC/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T (493) > C23430T +England/ALDP-91F278/2020|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T (493) > A5695G,C10116T,C23855T +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4113T,G21974C,C23191T (494) > C1347T,C6190T,C11758T,C12741T +USA/WI-UW-1202/2020|MW035373.1|20-08-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4113T,G21974C,C23191T (494) > C23910T,G27327T,G28690T +England/PHEC-16F19/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > C4570A +England/GSTT-265D4DF/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > +England/LIVE-A2765/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4391A,C15848T,T19893C (496) > C16084T,C19185T,C26625T +England/ALDP-658C87/2020|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4391A,C15848T,T19893C (496) > C1263T,G19254T,C25889T +Northern_Ireland/NIRE-1038B9/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > G25947C,C28312T +Northern_Ireland/NIRE-FCE85/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C12747T,G18028T +England/NORT-283BE4/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C24026T +DK/AD3_Farm1/2020|MT919525.1|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > A5421G,A22920T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > +England/BRIS-123EDF/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C2509T +England/BRIS-123F09/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C9118T +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T +England/ALDP-9ECEAD/2020|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1437T,G29745T (519) > C3874T,A6659G,T8008C,C27944T +England/BRIS-12DC53/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1437T,G29745T (519) > G4720A,A4928T +Scotland/QEUH-7B078B/2020|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2062T,C5184A,C13887T,C18687T,C23248T (520) > G14055T,C19269T +England/MILK-993EA5/2020|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2062T,C5184A,C13887T,C18687T,C23248T (520) > C10252T,C16733T,G25595T +England/BRIS-124C89/2020|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T313C,C29119T,C29585T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C3096T +England/LOND-D53CF/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G621A +USA/WA-S2724/2020|MT947562.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +USA/WA-S2728/2020|MT947566.1|20-07-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +Scotland/EDB5196/2020|20-05-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G26615T (552) > C13384T,A18902C,C27644A,A29767C +Scotland/CVR3185/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G26615T (552) > C16946T +England/BRIS-127363/2020|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17249T,G17722T (553) > G174T,G5572T,G12202T,T16521C +England/BRIS-127A40/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17249T,G17722T (553) > G2659T +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10260G,A10880G (554) > G16197T,C24382T +England/MILK-99DE32/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10260G,A10880G (554) > C2880T,A4044C,C6896T,A8413G,G19086T +England/CAMB-83A9E/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > G7761A,C14931T +England/EXET-136ED9/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > C8733T +England/ALDP-955D39/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3896T (556) > G5629T,G19889T,C27673T +Switzerland/300258/2020|LR898536.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3896T (556) > C6701T,C12116T,C14352T,G17334T +England/SHEF-D1D3E/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18713T (557) > C21618T,C25047T,C29095T,G29747T +England/SHEF-CBE43/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18713T (557) > C11396T,C17676T +England/CAMC-949688/2020|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T (558) > T3694C,G20580T +England/SHEF-C3AED/2020|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T (558) > C401T,T1438C +England/ALDP-90D6AE/2020|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > A3776G,C21855T,G25166C,C25831T,C26111T,C26195T +POL/PL_P12/2020|MT511068.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > C106T,C8025T +England/QEUH-99923A/2020|20-08-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G (561) > G974A,C7267T +England/MILK-825C54/2020|20-07-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G (561) > G680A,C14120T +England/MILK-9E2BDD/2020|20-09-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20742C (562) > A9337G,A27086T +Northern_Ireland/NIRE-1088C3/2020|20-09-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20742C (562) > C16260T,G25340T,C27684T +England/MILK-99D755/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T (563) > T4303C,C25553T,G25599T +England/MILK-99D764/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T (563) > G20125A,G22484T +England/ALDP-907D09/2020|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > C20320T +England/MILK-85E3E4/2020|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > G2144T +England/MILK-95862C/2020|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T (565) > G28557T +England/ALDP-94EF88/2020|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T (565) > C2106T,C12073T,C14676T,T20989C +England/PHEC-219E0/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T23227C +England/LEED-2AA59E/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C28969T +England/ALDP-95A754/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > T20764C +England/ALDP-95CEA8/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > C14931T +England/MILK-629D13/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G1820A,C11003T,T13417C,G22409T,C25896T,G25963A +England/PORT-2F5752/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G (574) > C18329T,G20062T,C23185T +England/QEUH-96A4C3/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G (574) > G3403T,C5691T +England/SHEF-C13B7/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > G10870T,C15315T +England/SHEF-10B2E79/2020|20-05-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > A9272C,G26416T +England/OXON-AEF9E/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C140T,T6582A +Wales/PHWC-162E7A/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C5497T +USA/WI-UW-982/2020|MT846668.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12488T,C25528T,G27084A (580) > G17964T,G22801T +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12488T,C25528T,G27084A (580) > A22108G,C28344T +USA/FL-QDX-228/2020|MT806770.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A25505C (581) > G675T,C4456T,A21625G +USA/VA-DCLS-0920/2020|MT929088.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A25505C (581) > C8664A,G8851A,C19983T,G29755T +England/ALDP-71D072/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T26156C +England/MILK-9573DB/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T9292C,C21910T +England/ALDP-954C6A/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G27857T +England/ALDP-A524EB/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C3099T,C17678T,G19816A,C25728T +Wales/ALDP-6C3E72/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > C13329T,C29675T +England/ALDP-5A15D0/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > G6589A,A22528G +Wales/PHWC-16881C/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C222T,C21780T (593) > C19602T,G29779A +Wales/PHWC-3612C/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C222T,C21780T (593) > C7932T,C8964T,C13274T,C14097T +England/PHEC-20B81/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20474T (594) > +England/MILK-992E97/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20474T (594) > A5128G,T6376A,C16329T,G25012A,C25728T,C27509T +England/QEUH-95DD9B/2020|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C2113T,T27856G +England/MILK-9570D4/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C7768T +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T (596) > C4551T,G20238T +DV_IZSPB_236_S50|LR992121.1|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T (596) > +England/SHEF-C184F/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T (597) > G12907A,C13667T,C22450T,G25687A,T29785A +England/ALDP-9D8FFC/2020|20-09-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T (597) > T20613C +England/NORT-28B1EA/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > C27741T +England/NORT-28B28D/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > A8734G +England/MILK-62FD59/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G (604) > T17313C,C17502T,C20320T +England/ALDP-90DDC7/2020|20-06-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G (604) > G488T,C1514T,C18744T +USA/IL-UW-1082/2020|MT929034.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C815T,C3411T,G25437T (605) > C2388T,G19656A,C26527T +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C815T,C3411T,G25437T (605) > T10795C,C12374T,C18452T,G25775T,C28153T +England/LIVE-9BC33/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > C4540T,C28006T +England/CAMB-1B087F/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1170T (607) > T8416C,C11379T,C16178T,G27651C +England/PHEC-2223F/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1170T (607) > C2488T,T7582C,C13671T +England/ALDP-5A2A49/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3154C (608) > C18981T +England/ALDP-5A2D6E/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3154C (608) > T15231C,G19670A,G25687T +USA/WA-S1407/2020|MT821568.1|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > T6023C,C19041T,A21312G,C28312T +USA/WA-S1434/2020|MT821707.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C8802T +England/CAMB-80B43/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > C2334T,C23121T +England/CAMB-7666D/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > G10870T,C21614T +USA/WA-S2573/2020|MT831840.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G (613) > +USA/WA-S2761/2020|MT947580.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G (613) > A5101G,A9830G,A12358T,G25922T +England/ALDP-9BEB16/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A (614) > G14428T +England/ALDP-A95376/2020|20-10-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A (614) > A9436T,C15848T,C17550T,G26153T +England/QEUH-A9F5D0/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G11447A,C21648T (615) > C5717T,C10138T,C12559T,A19098G,C24130T +England/QEUH-96AEF2/2020|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G11447A,C21648T (615) > G7037T,C12488T +Scotland/CVR1557/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G23401T +Wales/PHWC-34610/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G16014A +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C19273T +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > G15260T,G26268T +England/CAMB-82060/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > C5575T,A5991G,C13329T +England/CAMB-82E1B/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8374T +SAU/KFSHRC44/2020|MT820480.1|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > +SAU/KAIMRC67/2020|MT820487.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > G29422T +Scotland/EDB300/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2399T (629) > C15240T +Scotland/CVR3194/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2399T (629) > C10335T,A11430G,G19117T,G25429A,A27232G,C28940T +England/CAMB-1AA438/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T (630) > +England/CAMB-1AFB7A/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T (630) > C6016T,A8031G,C29353T +Wales/PHWC-48212D/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G (631) > G22381T,C26029A +England/QEUH-9C80B0/2020|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G (631) > G22471T,T22896C +England/MILK-9C4087/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,T4369C,T22020C,C27911T (632) > C1938T +England/QEUH-96F349/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,T4369C,T22020C,C27911T (632) > G21606T,C21910T,T21976C,G28230T +England/BIRM-5FC3B/2020|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T (633) > A8390G,C18676T,C19366T,C28311T,G29764A +England/PHEC-13ADF/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T (633) > +England/BIRM-6529A/2020|20-09-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C8917T (634) > C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T +USA/WA-S2831/2020|MW077478.1|20-09-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C8917T (634) > C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C +England/NORT-282796/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > A1755G,C15824T +England/NORT-2839AE/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > G29315T,G29468C +England/ALDP-951E49/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C527T,C1962T,C7735T,T23255C,A28065C (636) > C16045T,C28732T +England/ALDP-9557A4/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C527T,C1962T,C7735T,T23255C,A28065C (636) > C19454T,T19538C +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21255C,G28960T (637) > C21364T,C26625T,C28744T +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21255C,G28960T (637) > C21205T +IND/GBRC203a/2020|MT669321.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C5700A (638) > A2292C,C2836T,G25563T,C29750T +USA/WA-S2809/2020|MW077484.1|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C5700A (638) > C313T,C1489T,G3287T,C9693T,C10815T,C15346A,C16626T,C25728T,G29474T,C29750T +England/QEUH-96E025/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T (639) > T1088C,C20736T +Scotland/QEUH-94375E/2020|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T (639) > G25785T +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20288G,C21721T,C26894T,C28638A (640) > C478T,T2698C,G16068T,G16935T,G20679A,G29227T +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20288G,C21721T,C26894T,C28638A (640) > G2635A,T7426C,A23234G +England/CAMB-7C12A/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +England/CAMB-83348/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +Switzerland/220001/2020|LR882220.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20233T,C22210T (642) > G94T,C5365T,C13708A,A26097G,G28003T +England/BIRM-6BECD/2020|20-11-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20233T,C22210T (642) > G1738T,G4960T,A15477G,C22858T,C23705T,T25312C,C26681T,G27762C,G28056A,G28085T,C28603T,G29449A +England/CAMC-946506/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A23063T (643) > C913T,C6636T,G21800T,C27972T,G28048T +AUS/VIC2173/2020|MT972184.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A23063T (643) > G10540A,C26984T,T28196C +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > T3127C +England/ALDP-94A63C/2020|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T10513C,T27851C,C29541T,C29739T (645) > A7291G,C7423T,C9979T,C26447T,C29077T +England/ALDP-52A636/2020|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T10513C,T27851C,C29541T,C29739T (645) > A2756G,C17550T +England/SHEF-D1CE6/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C16101T (646) > C5339T,A29571T,C29572T,G29573A +England/SHEF-C0F96/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C16101T (646) > G12514T,A18616G,C28256T,G29779C +England/QEUH-B10460/2020|20-11-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21302T,C21304A,G21305A,G28884T (647) > A15753G,A19655G,G27798T +Scotland/QEUH-96D5CD/2020|20-08-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21302T,C21304A,G21305A,G28884T (647) > C4655T,G5305A,A5958G,C28887T +ZW-6983|LR963462.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > C10341T +ZW-6978|LR963455.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > A13833G +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C (649) > C28720T +England/MILK-1169960/2021|21-01-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C (649) > T4895C,C9072T,G20578A,G23948C,C24382T,G28209T,A28271G,C29769T +England/ALDP-952A44/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5924A,T21775G (650) > G16852T,G18984T +England/QEUH-9B4A22/2020|20-09-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5924A,T21775G (650) > G2885A,C15026T,G17427T,G19635T,C21846T +Netherlands/NA_359/2020|LR883961.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C13502T +Netherlands/NA_589/2020|LR883868.1|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C21588T,G25012T +England/CAMB-1AE7FF/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,G11842T (652) > C6033T +England/CAMB-762D2/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,G11842T (652) > C14757T,G16072T,A19743C,C22498T +England/MILK-A06194/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T (656) > C12513T,T29059C +England/CAMC-B32AA2/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T (656) > G14528A,C16393T,T16695G,C24023T +Scotland/EDB2049/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > T25916C +Scotland/EDB2100/2020|20-04-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > A17521G,A22206G +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > T17208C +USA/WI-UW-269/2020|MT429191.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > A23588T,C27657T +Wales/PHWC-340A9/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > C10376T,G18583T,G29773T (71) > G7675T,G18318T,T21745C,C27610T +Wales/PHWC-1667A8/2020|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > C10376T,G18583T,G29773T (71) > C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C +England/CAMB-83FBD/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > A3103C,C5893T,A28117T (72) > +England/CAMB-1AD004/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > A3103C,C5893T,A28117T (72) > A28356G +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > T15276A,G28842T (74) > G11417T,A15276T,G20679T,T21291C +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > T15276A,G28842T (74) > G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T +England/PHEC-14F5D8/2020|20-12-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A +USA/WA-S2992/2020|MW474166.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1990T,C2939T,A5264G,C16457T (87) > G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1990T,C2939T,A5264G,C16457T (87) > G596A,G1820A,G9526T,C14183T,C28344T +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T (88) > T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T (88) > +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > C4012T +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > C8109T +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > T12925C +USA/WI-UW-1126/2020|MT929103.1|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C715T,A23586G (101) > G487A,C4876T,A5877G,C18555T,A27489G,C28045T +USA/WI-UW-1071/2020|MT929023.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C715T,A23586G (101) > G1957T,C2623T,C13115T,G22026T +USA/VA-DCLS-0481/2020|MT951936.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T (102) > C799T,C6701T,C23604T +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T (102) > +KOR/YS006/2020|MW345824.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > C26261T +KOR/YS008/2020|MW345825.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28027T,G29742T (104) > C12754T,A14012T,G14250T,C22687T +USA/WA-S1037/2020|MT642186.1|20-05-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28027T,G29742T (104) > A18671C,C25466T +USA/AK-PHL660/2020|MW173157.1|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > A16872C +USA/MN-QDX-981/2020|MW065078.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > C3817T,A23813G +USA/VA-DCLS-1006/2020|MT952676.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > T18641C,C23208T,G25793T,C27807G +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G17590T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C15352T +USA/UT-00495/2020|MT444543.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > T11131A +USA/UT-02970/2020|MW053933.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C4878T,A22525G,C29272T,G29449T (119) > A22681C,G28202A +USA/UT-08378/2020|MW206039.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C4878T,A22525G,C29272T,G29449T (119) > C222T,A454G,C11750T,T17772C,G21099T,T29449G +USA/IL-UW-1064/2020|MT929016.1|20-07-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T (120) > +USA/VA-DCLS-1666/2020|MW280480.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T (120) > G7936A,A8040G,G29402T +Scotland/EDB3598/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T (131) > G22244T,C26461T +Scotland/EDB2451/2020|20-04-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T (131) > T10963A +England/MILK-9934B2/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T (132) > C9246T,C11747T,C13378T,G19056T,C28744T +Switzerland/240029/2020|LR880608.1|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T (132) > T27622C +England/RAND-12B3F28/2021|21-02-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T (134) > +England/RAND-12B3CF4/2021|21-02-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T (134) > +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > T1171C,A5747G,C10789T,G17259T,G24007A (139) > C10228T,C13335T,T14408C,C25611T,G29705T +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > T1171C,A5747G,C10789T,G17259T,G24007A (139) > C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C6843T,T11764C,G29402T (140) > T21294C,G28936A,A29115T +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C6843T,T11764C,G29402T (140) > C13176T,T17040C,C24106T +England/MILK-958598/2020|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > C4320T (144) > C5175T,A15283G,G16861T,C20844T,T27539C +England/ALDP-4F4092/2020|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > C4320T (144) > C1627T,C11494T,C14076T,T18309C,G20670A,C29529T +England/LIVE-A91F7/2020|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > T13006C (145) > C19186T +England/CAMB-1AE865/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > T13006C (145) > C1437T,A24070T,C26013T,C27945T +England/BRIS-12C762/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > G28808T,G29434C (159) > G10096A,G23755T,G24199T +England/BRIS-127AD7/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > G28808T,G29434C (159) > G3638T +BHR/600023154_S29/2020|MW237743.1|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T (194) > G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T (194) > C21310A +Scotland/QEUH-969725/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A (198) > C2135T,G23856T +England/QEUH-AD1648/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A (198) > C1514T,T6141A,C11490T,G13397T,C27577T +England/CAMC-A3E658/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C882T,C6990T (213) > T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T +England/MILK-A47DDF/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C882T,C6990T (213) > T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T +England/LOND-DC4E3/2020|20-11-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T (217) > A11923G,G19009T,C20233T,T21976C,C26645T +England/MILK-99D3AC/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T (217) > G6446T,C9811T,C21234A,C22713T,C29580T +IND/GBRC-366a/2020|MT951170.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G28851T (218) > C26058T +IND/GBRC-392b/2020|MT954593.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G28851T (218) > C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T +Switzerland/310517/2020|LR898824.1|20-10-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G5206T,C26885T,G28875T (219) > G370T,A8993G,C14763T,G25690A,C29370T +England/MILK-9AB1A1/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G5206T,C26885T,G28875T (219) > G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T +SAU/596/2020|MT755893.1|20-02-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > A23503G +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > G11417T,G28960T +England/ALDP-B75065/2020|20-11-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T181C,C8664T,C12525T,C15120T,G28975T (222) > G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A +Scotland/QEUH-AD4AFE/2020|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T181C,C8664T,C12525T,C15120T,G28975T (222) > A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T +SAU/578/2020|MT755891.1|20-02-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C27527T,C29421T +Scotland/EDB6640/2020|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T838C,G1729A,C1973T,C2919T,C23191T,T23605C +England/PHEC-1491AD/2020|20-10-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G4006T,T18877C,T25563G +England/TFCI-26FA9B7/2020|20-12-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > +England/MILK-B94ACC/2020|20-11-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > C15237T +England/MILK-EB78C6/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T (244) > C6310T,C10369T +England/CAMC-C44338/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T (244) > T1908C,C2947T,C17550T,C29509T +England/ALDP-EEACDD/2021|21-01-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C3811T,A6608G,A28911T (248) > C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T +England/LIVE-DDCD09/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C3811T,A6608G,A28911T (248) > A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T +England/MILK-ACEE55/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T2113C,G9190T,G28851C (261) > C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T +Switzerland/260079/2020|LR882418.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T2113C,G9190T,G28851C (261) > C842T,T1359C,C10702T,C11109T,C25886T,C27429T +Scotland/EDB6391/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T24923C (262) > C12194T,C13968T,C14189T +Scotland/EDB5108/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T24923C (262) > +USA/VA-DCLS-0489/2020|MT951943.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T5941C,A22438T (263) > G21600T,T27672C +USA/VA-DCLS-1388/2020|MW067734.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T5941C,A22438T (263) > G1659A,A4838G,C5548T,C14220T,C14724T +Scotland/QEUH-961BB8/2020|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > C346T,A28959G (264) > C9430T,G23782T,A28336G +Switzerland/250091/2020|LR881897.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > C346T,A28959G (264) > G11521T,T16059C,C23896T,T25078C,T27919C +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T (286) > C16362T +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T (286) > G25775T +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > T2845C (294) > C6500T,C17125T,C21145T,C29708T +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > T2845C (294) > G9805T,G11273A,G17944T +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > G23522A (295) > C24106T,C25162A,C25163A,A26927G +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > G23522A (295) > A25747C +Switzerland/300264/2020|LR898541.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > C2706T,C28703G (310) > C2470T,C4084T +England/QEUH-963433/2020|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > C2706T,C28703G (310) > C5339T +Scotland/CVR2213/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > C3411T,C3885T (339) > T3411C,A3413T,A5353G +Scotland/CVR1909/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > C3411T,C3885T (339) > C7279T,A14001G,C26801T +England/MILK-BB0022/2020|20-11-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C11050A (363) > +England/MILK-BB0031/2020|20-11-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C11050A (363) > +England/QEUH-9B3A8D/2020|20-09-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T (375) > T11152C,T11824C +England/NORW-F1F9C/2020|20-10-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T (375) > C203T,C5183T,A8031G,C9207T,C25521T,G26690T +England/PHEC-14E15D/2020|20-12-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > C20178T +England/PHEC-149635/2020|20-10-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > +England/ALDP-A95DE1/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > C22088T,C29686T (383) > G21193T,G24794T,G25135T,G26801C,T26843C +England/ALDP-9E75E9/2020|20-09-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > C22088T,C29686T (383) > G2764T +England/MILK-AC7B0A/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > G27877T (384) > C7528T,G24098T,C28315T,G28939T +England/NOTT-11336A/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > G27877T (384) > G713A,A21127G,T26163C +England/MILK-A799FE/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > T29185A (387) > A2658G,C17004T,C17125T +England/CAMC-A417F5/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > T29185A (387) > T23062C,G27459T,G29755T +England/QEUH-AE2A48/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > C10626T (388) > C6114A,T17208C +England/ALDP-A68CF9/2020|20-10-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > C10626T (388) > G6476T +England/CAMB-1B6439/2020|20-09-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > G25440T,C27752T (389) > A10323G,C28310A +England/MILK-9F1898/2020|20-09-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > G25440T,C27752T (389) > C5239T +England/MILK-A7CDC2/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G28321A (391) > G10996T,G24867T +England/CAMC-A5845E/2020|20-10-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G28321A (391) > C13009T,G17721T,G18462T,C21234T,G23675C +England/ALDP-AA10DA/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G21800T,A22053C (392) > T7549C,C9073T,G10870T +Wales/PHWC-4815AA/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G21800T,A22053C (392) > C12049T +Northern_Ireland/NIRE-FB967/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G3242A,G8120C,C21646T,A24205T,G28083T (430) > C4927T,C15738T,C27527T +England/QEUH-7A4BBB/2020|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G3242A,G8120C,C21646T,A24205T,G28083T (430) > C2511T +USA/WA-S2264/2020|MT831437.1|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > T242G,C5020T +USA/WA-S1922/2020|MT831459.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > C12528A +England/CAMB-83FF9/2020|20-04-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G10262A,C22995T,A27669G (435) > C8290T,C12242T +England/CAMB-75895/2020|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G10262A,C22995T,A27669G (435) > C4965T,C8956T +USA/WA-S2012/2020|MT831128.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28256T,C29784T (436) > T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T +USA/WA-S1775/2020|MT834200.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28256T,C29784T (436) > G13513A +England/ALDP-B82A0D/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > C4456T +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > G8015A,C9803T,C25797T +England/LOND-D6EBE/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A11839G (439) > C8293T,C16575T +England/SHEF-C88A2/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A11839G (439) > T3037C,C5878T,C7735T,C10645T +USA/WA-S860/2020|MT642111.1|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A23756G (440) > C4886T,C16178T +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A23756G (440) > T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C +England/QEUH-A0AFB4/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28905T (441) > G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C +England/ALDP-C48747/2020|20-12-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28905T (441) > G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T +Switzerland/230051/2020|LR882355.1|20-08-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > T2537G,G12191T,T16479C (445) > T7396C,C14120T,G25471T +Wales/MILK-9C729D/2020|20-09-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > T2537G,G12191T,T16479C (445) > A6659G,C6883T,C13261T,C15774T +England/BRIS-12A70A/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > C25528T (446) > C21077T +England/CAMB-77F61/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > C25528T (446) > G22299A +England/QEUH-9AE4E1/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G (466) > C18267T,G29736T +England/MILK-A180DE/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G (466) > A4764G,C21952T,G26257A +England/MILK-99D597/2020|20-08-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > C6629T,C15720T,G27877T,G27996T,A29424T,G29688A +England/NORW-EE34B/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > G18315A +England/NORW-E8693/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > C1348T,C3653T +Scotland/QEUH-96C6AD/2020|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C1471T (488) > C19524T,C20759T,G25088T,C26912T,C28292A,C29739T +Switzerland/270108/2020|LR882077.1|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C1471T (488) > G2782T,C15251A,C21034T,C21590T,G23302A +Northern_Ireland/NIRE-FBB52/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C6114T +England/CAMB-81070/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C4698T +Scotland/CVR41/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C823T +England/QEUH-962E81/2020|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G (528) > G24755T,A27973G +England/QEUH-96E605/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G (528) > C2841T +England/QEUH-9F9265/2020|20-09-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G28396A (529) > C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T +England/QEUH-98EE43/2020|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G28396A (529) > C2453T,G22918T,G27708T +England/NORW-E8709/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G1820A,C6541T (530) > A9737G,A29242G +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G1820A,C6541T (530) > A3740G,C12786T,C26333T +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G (531) > G28690T +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G (531) > G2534T,G9130A,G29422A +England/QEUH-9600C9/2020|20-08-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T +England/QEUH-9B92F8/2020|20-09-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > C245T,G3250T,C11020T,C11109T,G16377T,C27874T +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A8565C,A28847T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A11023G +England/CAMB-76490/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C27128T (535) > G8171A,A16541G,A17730G +England/CAMB-7CBD1/2020|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C27128T (535) > G960T,G26589C +Japan/TKYE630414_2020/2020|LC593818.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C8917T,C18167T,G21518T,G28975T (536) > G27604A,C29679T +Japan/TKYE622411_2020/2020|LC593808.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C8917T,C18167T,G21518T,G28975T (536) > G29773T +England/MILK-A18C8F/2020|20-10-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T (537) > +England/ALDP-C3C1FD/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T (537) > C19264T,T22672C,A23869G,T28340C +Wales/PHWC-15E0B7/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G22627A,G28628T (538) > C1063T,G16117T,C27849T +Wales/PHWC-30957/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G22627A,G28628T (538) > T11654C +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G25563C,G28178T (539) > G20134T,C24621A,G28300T +LC573289.2|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G25563C,G28178T (539) > G2305T +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,C14724T,G24262T,G27703T (540) > G5015A +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,C14724T,G24262T,G27703T (540) > G4148T,G5015A,C13620T,G28166A +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T27645A,G27666A (541) > C5979T,G29648T +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T27645A,G27666A (541) > T14127C,T14745G,G19180T,G22154T +England/CAMB-74D5B/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > G18898T (549) > G1323T,T18907G,C21772T +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > G18898T (549) > C823T,C1457T,G3304T,A20055G,C22208T,C29095T +Wales/PHWC-1645BF/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > C22314T,T24796C (550) > C5192T,C12400T,C25710T,C28432T +Wales/PHWC-33C88/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > C22314T,T24796C (550) > G6358A,A14328G,G29736A +England/MILK-ABBCCA/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > T3873C,G3880A (560) > A14144G,T20196C,C23536A +England/MILK-ACCF27/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > T3873C,G3880A (560) > C18131T,G26640T +Wales/PHWC-16578B/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T5465C,G24102A (567) > A489G,G6387A,C19185T,A25800T,A25801T +Wales/PHWC-166104/2020|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T5465C,G24102A (567) > T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T +England/BRIS-125D67/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G18859T (568) > C6347T +England/BRIS-12C841/2020|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G18859T (568) > A14691G,T19473C,T22325C +England/ALDP-94D8F7/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > A9997C +England/NOTT-111BFB/2020|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > G26426A +England/MILK-8664D7/2020|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C29733T +England/MILK-993300/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C8290T,C19367T,C23525T +USA/VA-DCLS-1073/2020|MT981458.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > T27846C,C29171T +USA/VA-DCLS-0120/2020|MT482111.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > C10818T,C21998T +Wales/PHWC-162751/2020|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > C6312A (577) > G18538T,A20136G +England/ALDP-497D12/2020|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > C6312A (577) > T3334A,A6375G,G24926T,C25665T +England/ALDP-9D9104/2020|20-09-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G (584) > C2462A,C10615T,G27047T +England/CAMC-A40F67/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G (584) > A12529G +Scotland/QEUH-A00DF0/2020|20-10-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G11230T,G11401T,T24088C (585) > A11546G,C29730G +England/ALDP-9CC5BD/2020|20-09-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G11230T,G11401T,T24088C (585) > C11224T,G28307C +England/QEUH-9B6EAC/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > A29700G +England/NORT-2A4CAE/2020|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > C27945T +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > A3801G,C26985T +Northern_Ireland/NIRE-FB369/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > G25456T +England/LEED-2AA4EC/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C22326T,C27128T +England/LEED-2AA394/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C20941T +England/BRIS-1854318/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C4780T,G22468T +England/BRIS-12E6FA/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C14676T,C17119T +England/WSFT-25C13CB/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > +England/PORT-2F5D9C/2020|20-06-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > A5277G +England/ALDP-5D52BE/2020|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > T28494C +England/ALDP-6FAF24/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > C6633T,C19862T +England/MILK-B01F25/2020|20-10-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A15972G,C19718T,T28759C (601) > C1722T,T3843C,G4300T,A4819G,C10277T,C15720T,C16114T,C17172T,A25351T,C27612T,A29031T,C29555T +Switzerland/210050/2020|LR882268.1|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A15972G,C19718T,T28759C (601) > C203T,T3095C,C12880T,C23896T,C25831T,G28077T,C28603T +England/ALDP-691499/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A23207G (602) > C8650T,A21177G,C28603T +England/ALDP-4A2BFC/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A23207G (602) > A20826G +England/ALDP-9B5BC4/2020|20-08-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G (603) > A9433T,G11837T,C18807T,C21595T,A22024C,C22096T,C25546T +England/ALDP-49F5B8/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G (603) > T21368C +USA/WA-S2598/2020|MT831859.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T (610) > G29254T +USA/WA-S1840/2020|MT834024.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T (610) > T5335C,G14186A,C27059T +USA/WA-S1246/2020|MT821587.1|20-05-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,T25783C (611) > C10408T,T21802C,C26022T,C27059T +USA/WA-S820/2020|MT641503.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,T25783C (611) > G17261A +Netherlands/NA_436/2020|LR883367.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > C4824T +England/CAMC-B36516/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C2918T +England/CAMC-B362D3/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C29311T +England/MILK-B3A284/2020|20-11-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > C27046T +England/CAMC-B365AD/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > T19232C +AUS/VIC3114/2020|MT972550.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C7600T,G7798T,T23548C (622) > C24912T,T27484C +AUS/VIC9664/2020|MW156172.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C7600T,G7798T,T23548C (622) > C506T,G29072T +AUS/VIC13094/2020|MW185501.1|20-07-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > G6662A +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > G5572A,A6366T,G11410A,G25776T (626) > A4228G,A11410G,G23403A +Poland/1/2020|LR899030.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > G5572A,A6366T,G11410A,G25776T (626) > T241C,T9440G,G17964T,T19488C,G29747T +England/CAMC-947259/2020|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C (627) > +England/MILK-9927C9/2020|20-08-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C (627) > T595C,G2659T,G15773A,C21789T,G24197T,G26172T +USA/COVID20-0537/2020|MT981422.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > G12832T (57) > C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > G12832T (57) > A28165G +England/QEUH-CAF17D/2020|20-12-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > C9142T,C19524T +USA/COVID20-0777/2020|MW002812.1|20-06-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G (92) > G4285A,G6421C,C16173T +USA/VA-DCLS-1147/2020|MT992749.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G (92) > G22487C +USA/VA-DCLS-1512/2020|MW197472.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G25947C (93) > G526T,T6949C,C29366T,C29750T +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G25947C (93) > C23685T,G27703T +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T (94) > +ARG/Cordoba-891/2020|MW633900.1|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T (94) > A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C19145T (95) > G4285T,T5059C,C16230T,C23525T,G25471T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C19145T (95) > C5540A +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > T13914C (96) > C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > T13914C (96) > G3638A,C16217T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,G26828T (97) > C18693A +USA/1453xE2/2020|MW521402.1|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,G26828T (97) > G7042T,C11396A,C21855T,G28655T +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A9984C,G25445T (98) > A9935G,T16632C,C19185T,C28824T,G29628T +USA/WA-S2867/2020|MW173410.1|20-09-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A9984C,G25445T (98) > G9278A,G11693T,C14937T,C21017T,C21219T +England/MILK-6166F0/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T (99) > T22912G +England/ALDP-9BCA93/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T (99) > C782T,G1210T,C28045T +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G26217T (100) > C21731T,G29645T +England/CAMC-947D3A/2020|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G26217T (100) > G105T,T10288C,C13821T,C26625T,A29752T +USA/WI-UW-1194/2020|MT981478.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > G9928T (110) > C10377T +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > G9928T (110) > A16148G,C16928T,G29422T +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > A22320G (112) > C3411T,G8114A,C11095T,G15908A +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > A22320G (112) > G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T +USA/UT-05592/2020|MW054143.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > G9705T (113) > A3121C,G23009T,G27637A,C29743T +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > G9705T (113) > C8389T,T19839C,G25523T,T29685G +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G10902A (116) > C7173T,G11596T,C13994T,C25546T +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G10902A (116) > G2659T,C3622T,G7936T,T9379A,A12148G,C18687T +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > G9738C,G13713A,C16394T (136) > A9492C,C21638T,C25919T +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > G9738C,G13713A,C16394T (136) > C11345T,C13860T +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T +England/ALDP-955F15/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G28907T (196) > G25793A +England/MILK-9A6856/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G28907T (196) > T2533C,T3873G,A8031G,G23126T,C26340T +England/ALDP-94EB75/2020|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A (197) > +England/ALDP-6E2806/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A (197) > T16456G,C27769G +England/MILK-5642D2/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > C21614T (215) > T1834C,C11783A,C25413T +England/CAMB-1B3593/2020|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > C21614T (215) > A5829G,C6651T,C8326T,A11730G,T25732G +England/SHEF-CDD62/2020|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > T241C,A8821G,C15752T,T26066C (216) > C25665T,T28098C,G29254T +England/SHEF-10B22B9/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > T241C,A8821G,C15752T,T26066C (216) > G3482A +Scotland/QEUH-A9E7BD/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > A3120C +Scotland/EDB7778/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > C28045T +England/QEUH-9B703C/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C (232) > C25466A,C25614T,A29101G +England/MILK-970CE0/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C (232) > G26389T +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > G25494T (233) > C1593T,C2940T,C10456T,G23611A +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > G25494T (233) > T15585A,C15613T,A24062G,T27484C +England/CAMC-1263B05/2021|21-02-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A (234) > G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A +England/QEUH-AD3822/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A (234) > G2035T,A2805G,C18555T,C21365T +England/SHEF-10C9BD2/2020|20-12-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C (235) > C15081T,A19963G +England/SHEF-10CC3AA/2020|20-12-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C (235) > C1420T +England/MILK-9A94E6/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T (236) > C7764T,C27059T,G27806T,C28087T +England/MILK-566C5A/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T (236) > +England/CAMC-C2CDFC/2020|20-12-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > T3366C +England/MILK-CAA0EE/2020|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > C28411T +England/MILK-A1BC04/2020|20-10-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G204T,T961C,G6288T,T9651G,T13880C,C16163T,A22992G,C27263T,C28975G,A29399G +England/QEUH-96A29C/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > G21204T,G29692T (246) > C15654T +England/ALDP-9EA6D4/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > G21204T,G29692T (246) > C8240T,C8357T +England/MILK-A6AEC4/2020|20-10-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > C26534T (247) > C2910T,C16393T,A19387G,G20491A,C24378T +England/MILK-B889A0/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > C26534T (247) > A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T +England/MILK-ACC08E/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T +England/ALDP-9BE8B5/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > T16242A (368) > G28745A +Scotland/EDB10724/2020|20-12-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > T16242A (368) > C2509T,C10615T,T12134C,C21365T,C22987T +Scotland/CVR4309/2020|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C7471T +England/QEUH-AE4EA4/2020|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > T14721C,T25519G (377) > C26894T,T28277C,A28612G +England/ALDP-9BECB9/2020|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > T14721C,T25519G (377) > C23029T +Wales/PHWC-16E6A3/2020|20-10-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > G6344T (378) > C3768T,C5031T,C18555T,T20976C +England/MILK-9A9D09/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > G6344T (378) > A1230G +England/QEUH-B6C0E9/2020|20-11-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > C66T,G10870T,A11781G,C25614T (379) > C5730T,C14318T,C23644T,C29739T +England/CAMC-AEA62E/2020|20-10-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > C66T,G10870T,A11781G,C25614T (379) > C18329T +Wales/PHWC-360A7/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > G11801A (433) > T4330C,T24063C +Wales/PHWC-260AA/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > G11801A (433) > T7168C +England/BRIS-185470D/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > +England/BRIS-12AF02/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > G27670T +England/MILK-11A5634/2021|21-01-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > T25713C (438) > C683T,C11747T,G22022A,T24991A,T25039C +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > T25713C (438) > C5796T,C9360T +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C (443) > C22264T +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C (443) > T27824C +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C (478) > +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C (478) > G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T +England/NORW-222D0F/2020|20-12-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T (480) > C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T +England/MILK-F72F49/2021|21-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T (480) > C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > T22020C,G23628T,C25728T,G26063T (481) > G2155T,C6541T,C10029T,C20844T,A24775C,G28914T +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > T22020C,G23628T,C25728T,G26063T (481) > C6541T,C6606T,G11926A,G27933T,G27990A +England/CAMB-72B44/2020|20-03-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/CAMB-822D3/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/ALDP-94DD07/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2447T,G22199T (502) > G3164T,C7528T,G20569T,C29625T +England/ALDP-49EC3C/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2447T,G22199T (502) > G29392T,C29541T +PER/covper024/2020|MW030255.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > C17436T,G27478T +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > A10323G,G27160T +PER/covper011/2020|MW030242.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > A21131G (504) > C3768T,C14265T,G17721T,C27213T,C27513T +PER/covper040/2020|MW030271.1|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > A21131G (504) > C12854T,G20752T +England/MILK-B1553B/2020|20-10-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C18747T (505) > C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A +England/MILK-66F889/2020|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C18747T (505) > G14547A,G14869A,A24879G,C29421T +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T (506) > A235C,T1921C,C22522T,C29259T +England/LOND-12F65DC/2021|21-01-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T (506) > G8591T,G15906T,A18594G,G23868T,G25906T,C26060T,G28079A,T28124C,T28723C,G29260T,G29543T +Switzerland/310500/2020|LR898805.1|20-10-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C (507) > C9286T,G18210T,C21306T,G28541T +Switzerland/300433/2020|LR898634.1|20-09-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C (507) > G27382T +England/QEUH-96BAA2/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T (508) > G1042T,C8895T,G25250T +Wales/ALDP-B19FFD/2020|20-11-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T (508) > G922T,T10369C,A23064C,G23608T,C28453T,C29642T +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T (509) > +PER/covper018/2020|MW030249.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T (509) > G3755T,G11552T,A28356G +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C2706T,G9968T,G16647T,T23480G (514) > +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C2706T,G9968T,G16647T,T23480G (514) > +England/MILK-9A699F/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C1457T,G3286A,C8290T,C8626T,C9298T,C24378T,G26648A,C28657T +England/CAMC-C3E586/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T (518) > C3736T,C6336T,G19735T,G23611T,C26735T,C26858T +England/CAMC-DE5550/2020|20-12-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T (518) > G6320T,C10582T,C12194T,C25603T +England/ALDP-A525BB/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G15438T,G25785T (523) > C1758T,G18337T,G24757T,G28903T,G29260T +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G15438T,G25785T (523) > C541T,C1528T,C2836T,C8905T,A23125T,G28851T +England/MILK-A45AF8/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G19480A (524) > G18985T,C21844T,T23084C,C25318T,G27358T +Scotland/QEUH-A613BF/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G19480A (524) > C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T +Switzerland/180039/2020|LR861669.1|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > C19763T (526) > C1912T,C10252T,C14178T +Switzerland/220022/2020|LR882244.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > C19763T (526) > C2062T,G6877T,T8082C,C13945T,C22687T +Japan/TKYE627000_2020/2020|LC593811.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > T4346C,C10376T,C14708T,C28725T,G29692T (527) > C7728T +Japan/TKYE624705_2020/2020|LC593810.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > T4346C,C10376T,C14708T,C28725T,G29692T (527) > A158G,C706T,C5974T,A26459G +IND/GBRC455b/2020|MW600453.1|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T (533) > G160T,T313C +IND/GBRC455a/2020|MW600436.1|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T (533) > G160T +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C28969T +USA/WI-UW-114/2020|MT706234.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A14330G,A27989G +England/CAMC-947392/2020|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C7843T,G15438T,C25207T,C28453T (573) > T25949C +England/MILK-977469/2020|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C7843T,G15438T,C25207T,C28453T (573) > C2536T,T7843C,C8318A,T26160C +AUS/VIC9179/2020|MW153248.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > C18555T,C22987T (624) > G1338C,C5691T,A11425T,C20089T +AUS/VIC11646/2020|MW155572.1|20-07-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > C18555T,C22987T (624) > G6617T +Scotland/EDB11343/2020|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > A2692T,C21614T,C26645T (77) > G9049T,C20405T,A25806G +Scotland/EDB11342/2020|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > A2692T,C21614T,C26645T (77) > A4459G,A18846G +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > C8947T,C12100T (138) > C1380T,C6539T,T7813C,A10417G,A19476G,C21638T,G22708T,G28628T,T29362C +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > C8947T,C12100T (138) > C1601T,C4918T +England/CAMC-A65DDB/2020|20-10-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T (225) > T22918G +England/CAMC-AAF5A0/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T (225) > C4672T,C8605T,C11003T +England/MILK-A192C8/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C (226) > A538G,A1098C,C2910T,G9092A +England/QEUH-9F3FDD/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C (226) > +England/MILK-ABBF2B/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > C7528T,C29555T (227) > C10474T,C13536T +England/QEUH-96A85E/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > C7528T,C29555T (227) > T23986C +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > C14724T +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > A6391G +England/PHEC-149F0D/2020|20-11-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T (230) > +England/MILK-BE717A/2020|20-11-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T (230) > C11003T,C26404T,G26754A +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T (231) > C9745T,C10440T +Scotland/QEUH-BEAF22/2020|20-12-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T (231) > G4105T,C4754T,C5730T,C21597T,T21841A +England/MILK-A230C1/2020|20-10-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > A2175G +Scotland/QEUH-9696CE/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > C7844T,T24925C,C27920T (320) > C2644A,C5221T,C26985T +England/CAMC-B3582D/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G18186T,C28854T (334) > A9859G,C14531T +England/MILK-A796E8/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G18186T,C28854T (334) > G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T +Northern_Ireland/QEUH-969C53/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > C19545T,C26408T +England/ALDP-9E79B0/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G18803T (338) > C5817T,T10321C,A10724G,C16469T,C21635T,G25320T +England/MILK-B561FE/2020|20-11-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G18803T (338) > C1288T,T16213C,A23631G,C26681T,G27882T +England/CAMC-9DFBC4/2020|20-09-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C6317T (370) > G9658T,T21841C +England/QEUH-AD1165/2020|20-10-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C6317T (370) > C4795T,T5471C,A21631T +England/ALDP-FB5E3E/2021|21-01-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G17944T,C24334T,T24814C,C27769T (371) > G1141A,T11522G,A13315G,C18744T,T21973C +England/ALDP-E8756E/2021|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G17944T,C24334T,T24814C,C27769T (371) > C12781T,G17632A,C28453T +England/ALDP-A2EAE6/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > T24769C,C25460T (372) > C337T,T21294A,G21295A,G21296A,A25008G +Scotland/QEUH-A636C3/2020|20-10-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > T24769C,C25460T (372) > C593T,T26903C,C26936T +England/QEUH-A76C07/2020|20-10-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > G21777A +England/MILK-AC7997/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > C125T +Scotland/QEUH-9DC927/2020|20-09-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G8179T (374) > C4794T,T8179G,G23006A +Scotland/QEUH-9B75D3/2020|20-09-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G8179T (374) > G29778T +England/CAMC-AEACFF/2020|20-10-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C12249T (516) > C3141T,C4683T,C8683T,C17690T,T19935C,C24130T,A27979G +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,C29769T (545) > C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,C29769T (545) > T28360C +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G (546) > C14805T +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G (546) > C11750T,C18183T,C25731T +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > G26416T (547) > C2044T,C10626T,C11824T,A22052C,C26645T,C29555T +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > G26416T (547) > C1663T,G3155T,A4485G,C5493T,G14020T,C27431T +England/MILK-97356A/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C15720T +England/MILK-9A9F7C/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > C7844T,T24925C,C27920T (320) > C4893T,C29762T (321) > G19879A,C25433T +England/OXON-F42364/2020|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > C7844T,T24925C,C27920T (320) > C4893T,C29762T (321) > G1306T,G4510T,T8662C,C8733T,C18032T +England/MILK-9C2766/2020|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > G2072A,C27294T (337) > T22189C,G27382C,A27383T,T27384C +England/ALDP-A95A9F/2020|20-10-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > G2072A,C27294T (337) > T14499C,C17118T,C23854T,A27865T,T27866A +England/PHEC-149FA3/2020|20-11-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C12249T (516) > G3431T,T25577C,C25626T,C27002T (517) > G3433A,G8084A,C11941T,C18555T,A26174C +England/QEUH-C9332B/2020|20-12-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C12249T (516) > G3431T,T25577C,C25626T,C27002T (517) > G9314A,C13605T,G14490A +England/CAMC-A649C9/2020|20-10-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C556T,C23525T (242) > C6813T,C13620T +England/MILK-B04890/2020|20-10-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C556T,C23525T (242) > G8371A,C23679T +England/CAMC-A57F03/2020|20-10-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > C25386T (324) > T505C,A2419G,G17058T +England/MILK-A7D15C/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > C25386T (324) > C21302T,C21304A,C26256T,C27119T,C28453T +Wales/PHWC-47F3A5/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > G28817T (325) > T9655C,G28198T +England/ALDP-A85BCC/2020|20-10-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > G28817T (325) > T209C,T11857C +England/ALDP-A2FCA3/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > T7919G (327) > C24734T +Scotland/MILK-A69E6B/2020|20-10-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > T7919G (327) > A28483G,A28877G +England/MILK-A7D1A7/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > G18583A (328) > T4579A,T27835C +England/MILK-A91486/2020|20-10-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > G18583A (328) > G2272T,G20679T,G24586T +AUT/2021006354/2021|MW672357.1|21-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C829T,C14697T,C18176T,G19398T,G28083T,G28975T (333) > C878T,C12374T,C20384T,C21639T,C29367T +England/MILK-E7F4C6/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C829T,C14697T,C18176T,G19398T,G28083T,G28975T (333) > T9070C,C10296T +England/ALDP-AA169C/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > G25218T (331) > C23191T,G23909A +England/MILK-A474DA/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > G25218T (331) > A6659G +England/ALDP-B483EA/2020|20-11-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > T8110C (332) > C10039A,T18402C,C29738T +England/QEUH-AA0035/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > T8110C (332) > G11417T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_16_sample_names.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1234 @@ +England/BRIS-1853249/2020|20-04-02 +NPL/61-TW/2020|MT072688.1|20-01-13 +Wales/PHWC-25B04/2020|20-03-24 +Wales/LIVE-A6831/2020|20-03-16 +Scotland/EDB1317/2020|20-04-09 +Scotland/EDB354/2020|20-03-30 +England/SHEF-BFF8B/2020|20-03-25 +England/SHEF-BFFC7/2020|20-03-25 +England/PHEC-1E01E/2020|20-04-03 +DP0476/2020|LC571003.1|20-02-16 +DP0191/2020|LC570980.1|20-02-15 +England/EXET-135818/2020|20-04-11 +England/LIVE-A5D06/2020|20-03-17 +England/LIVE-A065B/2020|20-05-27 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 +Scotland/GCVR-171160/2020|20-03-26 +England/BRIS-130E2A/2020|20-03-24 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 +NED/NB02_13KS/2020|MT457397.1|20-04-29 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 +England/BRIS-1258A2/2020|20-03-29 +England/SHEF-BFEBB/2020|20-03-24 +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 +USA/DC-HP00063/2020|MT646075.1|20-03-13 +HKG/HKU-904a/2020|MT365032.1|20-01-30 +England/LIVE-9E66F/2020|20-04-10 +Scotland/CVR705/2020|20-03-26 +England/PHEC-1A601/2020|20-03-04 +England/PHEC-2275E/2020|20-06-22 +England/LIVE-A4C46/2020|20-03-12 +Scotland/EDB046/2020|20-03-15 +England/BRIS-12EEB6/2020|20-04-22 +Scotland/EDB199/2020|20-03-26 +England/CAMB-74A09/2020|20-03-18 +England/ALDP-9EE3AC/2020|20-05-06 +England/CAMB-8042A/2020|20-04-10 +England/CAMB-737B8/2020|20-03-30 +USA/WA-S885/2020|MT642386.1|20-04-22 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 +USA/WA3-UW1/2020|MT163716.1|20-02-27 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 +England/BRIS-1265AA/2020|20-04-10 +AUS/NT38/2020|MT641726.1|20 +France/40002VJ/2020|MT470179.1|20-03 +England/CAMB-7772D/2020|20-03-31 +England/BRIS-12208F/2020|20-03-21 +England/ALDP-52C0FA/2020|20-06-01 +England/LIVE-9D7D6/2020|20-04-15 +USA/WI-UW-298/2020|MT706406.1|20-04-13 +USA/WI-UW-314/2020|MT706422.1|20-04-16 +USA/WI-UW-325/2020|MT706432.1|20-04-24 +USA/WI-UW-290/2020|MT706398.1|20-04-08 +Scotland/CVR3488/2020|20-05-12 +Scotland/CVR780/2020|20-03-27 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 +Japan/TKYE64688_2020/2020|LC581375.1|20-03 +MYS/188407/2020|MT372480.1|20-03-18 +AUS/VIC961/2020|MT451653.1|20-03-27 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +USA/COVID20-0008/2020|MT764174.1|20-03-10 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 +AUS/VIC1255/2020|MT451830.1|20-04-11 +AUS/VIC1878/2020|MT745600.1|20-03-29 +England/LCST-24D7202/2020|20-06-22 +England/SHEF-BFF21/2020|20-03-25 +Switzerland/100159/2020|LR884273.1|20-03-16 +England/LOND-126031F/2020|20-03-15 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +Wales/PHWC-285F4/2020|20-04-01 +England/BRIS-130965/2020|20-04-13 +Scotland/CVR44/2020|20-03-13 +Scotland/CVR839/2020|20-03-27 +Scotland/GCVR-170107/2020|20-03-23 +Scotland/CVR207/2020|20-03-18 +England/NORT-284A9B/2020|20-03-25 +Scotland/CVR10/2020|20-03-10 +Wales/PHWC-310CA/2020|20-04-11 +Wales/PHWC-31CB7/2020|20-04-14 +Wales/PHWC-26D2B/2020|20-03-30 +Spain/H12_46/2020|LR884009.1|20-04-08 +Spain/R11/2020|LR884126.1|20-03-06 +Spain/LP19_4952/2020|LR884066.1|20-03-07 +Spain/R10_33/2020|LR884127.1|20-03-02 +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 +England/CAMC-C91F38/2020|20-12-11 +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 +Scotland/EDB5629/2020|20-03-24 +Scotland/EDB5040/2020|20-04-02 +Scotland/EDB1824/2020|20-04-16 +England/ALDP-CB55B4/2020|20-12-20 +England/CAMC-CF4B5D/2020|20-12-21 +USA/WI-UW-06/2020|MT772088.1|20-03-21 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 +GHA/34927_S20/2020|MT890226.1|20-05-23 +GHA/35563_S37/2020|MT890230.1|20-05-24 +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 +England/BRIS-123965/2020|20-04-07 +England/BRIS-125347/2020|20-03-27 +IND/Isolate_9088/2020|MW555597.1|20-06-30 +IND/763/2020|MT577009.1|20 +England/CAMB-75BD8/2020|20-03-29 +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 +England/ALDP-9ED9F6/2020|20-05-05 +England/ALDP-944BD9/2020|20-06-07 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 +USA/WA-S3017/2020|MW474188.1|20-08-15 +USA/WA-S2852/2020|MW079820.1|20-09-01 +USA/WI-UW-26/2020|MT706147.1|20-03-24 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 +USA/WI-UW-558/2020|MT750137.1|20-06-25 +AUS/VIC2260/2020|MT972173.1|20-06-22 +England/EXET-1358BE/2020|20-04-15 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 +USA/WI-UW-1105/2020|MT929055.1|20-07-24 +USA/RML-22/2020|MW221270.1|20-08-30 +England/MILK-9750EF/2020|20-08-21 +BHR/740704818/2021|MW661071.1|21-01-26 +England/QEUH-E93C6A/2021|21-01-04 +Scotland/CVR2931/2020|20-04-22 +Scotland/GCVR-172150/2020|20-03-30 +England/BRIS-124885/2020|20-03-24 +England/BRIS-122C4F/2020|20-04-02 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 +Switzerland/100198/2020|LR884312.1|20-03-17 +England/NOTT-10E1B3/2020|20-03-19 +USA/WI-UW-37/2020|MT706158.1|20-03-22 +Scotland/CVR2927/2020|20-04-22 +Scotland/GCVR-173C30/2020|20-04-07 +England/ALDP-A6CC8C/2020|20-10-14 +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 +Switzerland/140091/2020|LR824563.1|20-04-18 +England/ALDP-49A5AE/2020|20-06-13 +England/ALDP-4A2A77/2020|20-05-22 +England/BRIS-12755E/2020|20-04-22 +England/BRIS-12468B/2020|20-04-09 +England/NORW-E9DF7/2020|20-05-02 +Scotland/EDB156/2020|20-03-23 +Wales/PHWC-27B20/2020|20-03-30 +Wales/PHWC-2624A/2020|20-03-27 +USA/UT-08320/2020|MW206019.1|20-05-15 +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 +Wales/PHWC-2BF8A/2020|20-04-02 +Wales/PHWC-29E43/2020|20-04-04 +England/LOND-D3534/2020|20-03-27 +England/PHEC-20C24/2020|20-04-21 +England/CAMB-7D2EA/2020|20-04-06 +England/LIVE-A63E5/2020|20-03-18 +Wales/PHWC-260C8/2020|20-03-26 +England/BRIS-12F969/2020|20-03-30 +England/PHEC-2083F/2020|20-04-13 +Wales/PHWC-16C6F0/2020|20-06-09 +England/QEUH-B2DD0B/2020|20-11-03 +England/MILK-A7B0BB/2020|20-10-14 +Wales/PHWC-27461/2020|20-03-31 +Wales/PHWC-29F13/2020|20-04-01 +AUS/VIC989/2020|MT451674.1|20-03-31 +AUS/VIC1056/2020|MT451723.1|20-04-03 +England/LIVE-A65EF/2020|20-03-19 +Wales/PHWC-2B7CE/2020|20-04-12 +IND/GBRC238b/2020|MT676367.1|20-06-12 +IND/GBRC209a/2020|MT664202.1|20-06-11 +Scotland/GCVR-1725BE/2020|20-04-04 +Scotland/CVR30/2020|20-03-13 +IND/GBRC99/2020|MT509504.1|20-05-06 +IND/GBRC31/2020|MT467247.1|20-04-29 +AUS/VIC1239/2020|MT451821.1|20-04-02 +AUS/VIC1282/2020|MW153048.1|20-04-08 +IND/GBRC128/2020|MT539172.1|20-05-02 +IND/GBRC123/2020|MT539176.1|20-05-02 +POL/PL_MCB_32/2020|MW273814.1|20-04-22 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +England/CAMB-7BED9/2020|20-04-04 +Netherlands/NA_302/2020|LR878041.1|20-04-01 +England/NORT-289814/2020|20-04-01 +England/ALDP-9ED57A/2020|20-05-08 +USA/WI-UW-1385/2020|MW035549.1|20-09-06 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 +Scotland/CVR129/2020|20-03-13 +Scotland/CVR52/2020|20-03-14 +England/ALDP-94D8D9/2020|20-06-20 +England/ALDP-9442D4/2020|20-06-07 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 +England/ALDP-BCA4B0/2020|20-11-23 +England/ALDP-119985B/2021|21-01-27 +USA/WA-S1222/2020|MT821613.1|20-05-08 +USA/WA-S1655/2020|MT834136.1|20-05-29 +USA/FHCRC-19442/2020|MW593677.1|20-07-30 +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 +USA/WA-S4100/2021|MW555971.1|21-01-18 +USA/WA-S4074/2021|MW555949.1|21-01-19 +England/CAMB-76515/2020|20-03-29 +England/CAMB-1AE294/2020|20-04-27 +England/LEED-2A8D10/2020|20-03-31 +England/CAMB-1AC6F4/2020|20-04-21 +England/CAMB-7EBDF/2020|20-04-07 +Scotland/CVR2381/2020|20-04-13 +Scotland/CVR2197/2020|20-04-11 +Scotland/CVR3417/2020|20-05-07 +Scotland/CVR1519/2020|20-04-03 +England/MILK-93B73B/2020|20-06-21 +England/MILK-9589F6/2020|20-06-15 +England/BRIS-128441/2020|20-04-16 +England/CAMB-7C39D/2020|20-04-13 +England/NORW-E8C37/2020|20-04-13 +England/NORW-E75A6/2020|20-05-04 +Wales/PHWC-3122E/2020|20-04-10 +Wales/PHWC-1645EC/2020|20-05-10 +England/ALDP-50085E/2020|20-06-27 +England/PHEC-127E8/2020|20-03-28 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 +England/MILK-9A8AB8/2020|20-08-31 +England/CAMC-106415F/2021|21-01-15 +England/CAMC-C470F2/2020|20-12-10 +USA/WI-UW-1046/2020|MT928999.1|20-07-29 +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 +Scotland/CVR3054/2020|20-04-24 +England/MILK-95698F/2020|20-06-06 +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 +USA/AK-PHL414/2020|MT946886.1|20-06-03 +USA/AK-PHL689/2020|MW173160.1|20-06-29 +England/MILK-974596/2020|20-08-17 +England/NORW-ECD21/2020|20-05-29 +England/NORW-E755B/2020|20-05-04 +England/MILK-978626/2020|20-07-30 +England/MILK-9A565D/2020|20-09-03 +USA/NM-QDX-264/2020|MT806796.1|20-04-30 +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 +Scotland/EDB1198/2020|20-04-08 +England/PHEC-20A84/2020|20-04-20 +Scotland/EDB6324/2020|20-06-01 +Scotland/EDB4579/2020|20-05-06 +Wales/PHWC-360E3/2020|20-04-26 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 +Netherlands/NA_289/2020|LR878031.1|20-03-31 +France/10065EE/2020|MT470176.1|20-03 +IND/nimh-19510/2020|MW181843.1|20-05-16 +IND/GBRC174b/2020|MT607610.1|20-06-05 +France/10036BG/2020|MT470106.1|20-03 +IHUCOVID-0033|LR794417.1|? +England/PORT-2D0D4C/2020|20-04-27 +Switzerland/100210/2020|LR884314.1|20-03-18 +POL/PL_MCB_72/2020|MW273854.1|20-05-10 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 +Scotland/CVR3629/2020|20-05-24 +Scotland/QEUH-5456F9/2020|20-05-13 +England/QEUH-9CE80D/2020|20-09-17 +England/QEUH-990752/2020|20-08-29 +AUS/VIC38/2020|MT450953.1|20-03-11 +IHUCOVID-0133|LR794459.1|? +England/PHEC-1555C0/2021|21-01-16 +England/MILK-E6578E/2020|20-12-30 +England/CAMC-106052A/2021|21-01-16 +England/LOND-12F6633/2020|20-12-15 +Switzerland/240009/2020|LR880588.1|20-08-07 +Switzerland/240084/2020|LR880634.1|20-08-12 +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 +Switzerland/101166/2020|LR824397.1|20-03-31 +Switzerland/100154/2020|LR824311.1|20-03-16 +PER/covper020/2020|MW030251.1|20-07-03 +PER/covper091/2020|MW030227.1|20-03-17 +England/CAMB-737D6/2020|20-03-31 +England/CAMB-1B08D9/2020|20-05-04 +Wales/PHWC-16930B/2020|20-04-01 +Wales/PHWC-34285/2020|20-04-14 +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 +England/BRIS-12B2BD/2020|20-05-02 +England/BRIS-128DCE/2020|20-04-14 +England/CAMC-947875/2020|20-07-13 +Spain/R60/2020|LR884131.1|20-04-17 +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 +Scotland/CVR3062/2020|20-04-24 +Scotland/CVR2435/2020|20-04-14 +England/OXON-B0922/2020|20-03-28 +AUS/VIC995/2020|MT451680.1|20-03-31 +England/CAMB-1AC7D3/2020|20-04-22 +England/MILK-BB0F16/2020|20-11-17 +England/CAMC-BBDD4C/2020|20-11-22 +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 +England/LEED-2A91D7/2020|20-04-06 +England/LEED-2A87C7/2020|20-04-03 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +USA/WA-UW-4105/2020|MT358746.1|20-03-31 +USA/WA-UW-2220/2020|MT345839.1|20-03-23 +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 +England/CAMB-7A7DF/2020|20-04-02 +Netherlands/NA_18/2020|LR878352.1|20-03-09 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 +England/LIVE-DAB556/2020|20-10-18 +England/PHEC-14DE93/2020|20-11-11 +Wales/PHWC-1658A6/2020|20-05-19 +Wales/PHWC-2E0A2/2020|20-04-10 +England/ALDP-952A53/2020|20-06-13 +England/ALDP-95A745/2020|20-06-13 +Scotland/EDB3137/2020|20-04-06 +Scotland/EDB2810/2020|20-03-30 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 +USA/UT-02231/2020|MT444626.1|20-04-15 +USA/WA-S2850/2020|MW079819.1|20-09-01 +USA/WA-S2746/2020|MT947577.1|20-07-19 +USA/WI-UW-879/2020|MT846567.1|20-07-14 +USA/UT-05590/2020|MW084605.1|20-06-01 +Netherlands/NA_588/2020|LR883860.1|20 +Netherlands/NA_583/2020|LR883819.1|20 +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 +England/CAMB-7771E/2020|20-03-30 +England/CAMB-7DC91/2020|20-04-05 +USA/WI-UW-1092/2020|MT929042.1|20-07-27 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 +USA/WA-S1266/2020|MT821676.1|20-05-13 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 +USA/IL-UW-385/2020|MT772536.1|20-05-23 +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 +USA/UT-03041/2020|MW053962.1|20-05-01 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 +USA/WA-S2725/2020|MT947550.1|20-07-07 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 +USA/WI-UW-994/2020|MT846680.1|20-07-20 +England/BRIS-128CA3/2020|20-04-14 +England/BRIS-12B1CF/2020|20-05-15 +USA/WI-UW-491/2020|MT750074.1|20-06-11 +USA/WI-UW-522/2020|MT750102.1|20-06-24 +USA/DC-HP00089/2020|MT509482.1|20-03-31 +USA/UT-03817/2020|MT873871.1|20-04-03 +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 +England/BRIS-12D9F2/2020|20-05-06 +England/BRIS-12B156/2020|20-05-08 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 +AUS/VIC1161/2020|MT451779.1|20-04-09 +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 +England/OXON-B15A5/2020|20-04-29 +England/BRIS-129D72/2020|20-04-15 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 +USA/VA-DCLS-1282/2020|MW067700.1|20-08 +USA/COVID20-1144/2020|MW067817.1|20-07-10 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 +Wales/PHWC-1662B6/2020|20-06-13 +Wales/PHWC-26B12/2020|20-03-29 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 +England/BRIS-12BF3E/2020|20-05-09 +England/BRIS-12DF1E/2020|20-06-04 +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 +USA/VA-DCLS-1517/2020|MW197475.1|20-07 +USA/WI-UW-1268/2020|MW035438.1|20-08-25 +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 +Scotland/EDB6146/2020|20-05-14 +Scotland/EDB6052/2020|20-05-08 +England/CAMB-7FBCF/2020|20-04-16 +England/CAMB-784BC/2020|20-04-06 +England/PHEC-15A73/2020|20-03-29 +USA/CA-QDX-796/2020|MW064788.1|20-03-23 +B90|LR898037.1|? +O9|LR963074.1|? +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 +USA/WI-UW-738/2020|MT772509.1|20-06-30 +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 +England/CAMC-946515/2020|20-07-15 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 +USA/WI-UW-249/2020|MT706376.1|20-03-16 +USA/WI-UW-84/2020|MT706205.1|20-03-24 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 +England/PHEC-1C872/2020|20-04-16 +England/BRIS-130015/2020|20-04-11 +USA/UT-04888/2020|MW084559.1|20-05-26 +USA/UT-04282/2020|MW084509.1|20-05-14 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 +Wales/PHWC-15DFD9/2020|20-05-14 +Wales/PHWC-2AF12/2020|20-04-06 +England/CAMC-B533A0/2020|20-11-08 +England/MILK-9781E9/2020|20-07-29 +321398|LR962930.1|20-10-13 +England/QEUH-B8053B/2020|20-11-14 +IHUCOVID-0441|LR794655.1|? +IHUCOVID-0428|LR794641.1|? +USA/WA-S4490/2021|MW648014.1|21-01-21 +USA/WA-S3458/2020|MW494078.1|20-12-07 +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +USA/VA-DCLS-0229/2020|MT558657.1|20-04 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 +Scotland/CVR3970/2020|20-08-22 +England/MILK-A7D5AB/2020|20-10-13 +USA/UT-01683/2020|MT536956.1|20-04-13 +USA/UT-03892/2020|MT711875.1|20-04-13 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 +USA/WA-S1281/2020|MT821642.1|20-05-12 +USA/WA-S2367/2020|MT831837.1|20-06-11 +USA/VA-DCLS-0804/2020|MT925987.1|20-07 +USA/VA-DCLS-1454/2020|MW067779.1|20-08 +England/NORW-E7EBA/2020|20-05-06 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 +USA/WI-UW-413/2020|MT772562.1|20-04-07 +USA/WI-UW-288/2020|MT706396.1|20-04-08 +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 +England/MILK-99DB3B/2020|20-08-31 +England/ALDP-5D3DEC/2020|20-06-19 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 +England/MILK-9C3D45/2020|20-09-09 +England/QEUH-9C7EA8/2020|20-09-11 +Scotland/EDB3341/2020|20-04-08 +Scotland/EDB6880/2020|20-04-30 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 +England/ALDP-B252AA/2020|20-11-04 +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 +England/LOND-D5444/2020|20-04-15 +Scotland/CVR3238/2020|20-04-26 +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 +Scotland/EDB3662/2020|20-04-28 +England/ALDP-6FB8FB/2020|20-06-29 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 +England/LIVE-A00F3/2020|20-06-04 +England/QEUH-544733/2020|20-05-14 +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 +England/MILK-654007/2020|20-07-04 +England/OXON-B1781/2020|20-05-04 +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 +Switzerland/220021/2020|LR882232.1|20-07-27 +England/QEUH-96E08F/2020|20-08-18 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +England/MILK-977645/2020|20-07-24 +England/CAMC-B325A1/2020|20-11-05 +England/CAMC-B34141/2020|20-11-05 +England/MILK-A795AF/2020|20-10-14 +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 +England/PHEC-14F392/2020|20-12-24 +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 +USA/WA-S2808/2020|MW077495.1|20-08-31 +England/CAMC-94C02D/2020|20-07-15 +England/MILK-95DBDD/2020|20-06-20 +England/CAMB-79ECC/2020|20-04-01 +England/PHEC-224A2/2020|20-06-08 +Switzerland/310363/2020|LR898676.1|20-10-07 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 +England/PHEC-152C73/2020|20-11-16 +Scotland/QEUH-96B4E0/2020|20-08-17 +England/MILK-9AA782/2020|20-08-31 +Scotland/QEUH-9D11C0/2020|20-09-16 +England/QEUH-A0077A/2020|20-10-02 +England/ALDP-AA0ED1/2020|20-10-22 +England/QEUH-A4CF6B/2020|20-10-05 +Switzerland/270068/2020|LR882987.1|20-09-02 +Switzerland/332169/2020|LR898966.1|20-10-22 +England/MILK-ABB8D5/2020|20-10-21 +England/NORT-2884A8/2020|20-11-22 +England/QEUH-AD0DDB/2020|20-10-26 +Wales/MILK-9E3240/2020|20-09-21 +GRC/202_32984/2020|MT459870.1|20-03-12 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/PORT-2D3B4F/2020|20-04-18 +England/EXET-136EE8/2020|20-04-20 +England/PHEC-215FB/2020|20-04-29 +England/PHEC-1B7C1/2020|20-04-08 +Switzerland/120182/2020|LR860799.1|20-04-27 +England/ALDP-9545BA/2020|20-06-17 +England/ALDP-651C9D/2020|20-07-04 +Scotland/CVR3919/2020|20-06-21 +England/ALDP-9558ED/2020|20-06-12 +England/NORT-286255/2020|20-09-16 +England/BRIS-12F78D/2020|20-03-10 +Switzerland/100802/2020|LR824314.1|20-03-25 +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 +PHL/UPMNIH_C1/2020|MW243995.1|20-07 +PHL/COVID-6009/2020|MT919790.1|20-07-18 +England/PHEC-20E4C/2020|20-04-16 +England/NORT-283B7B/2020|20-04-02 +England/ALDP-95665B/2020|20-06-08 +England/CAMB-7767B/2020|20-03-31 +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 +England/MILK-A79D10/2020|20-10-15 +England/PHEC-148F95/2020|20-10-15 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 +USA/VA-DCLS-1485/2020|MW205988.1|20-07 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +Switzerland/250060/2020|LR881882.1|20-08-18 +England/QEUH-A77F0D/2020|20-10-12 +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 +England/OXON-AEBC7/2020|20-04-12 +England/QEUH-96E27A/2020|20-08-20 +England/MILK-74C001/2020|20-06-29 +England/LOND-D4C6B/2020|20-04-15 +Wales/PHWC-164485/2020|20-05-02 +England/ALDP-5C701F/2020|20-06-19 +England/ALDP-51F142/2020|20-06-02 +England/ALDP-955FAC/2020|20-06-08 +England/ALDP-49E391/2020|20-05-20 +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 +England/LOND-126DFA5/2020|20-12-27 +Wales/PHWC-4846A4/2020|20-10-24 +Northern_Ireland/NIRE-10677D/2020|20-05-14 +Northern_Ireland/NIRE-106740/2020|20-05-14 +England/SHEF-C9FBB/2020|20-04-11 +England/LOND-D6531/2020|20-04-22 +England/MILK-9705F4/2020|20-08-18 +England/ALDP-9B6440/2020|20-08-28 +Scotland/EDB6515/2020|20-06-15 +England/QEUH-AD487C/2020|20-10-26 +England/QEUH-9B7B2C/2020|20-09-03 +Switzerland/250070/2020|LR881870.1|20-08-18 +England/QEUH-9B5344/2020|20-09-02 +England/ALDP-6839B9/2020|20-07-02 +England/ALDP-6BAB59/2020|20-06-29 +FRA/Env-Di/2020|MT709105.1|20-05-14 +AUS/VIC1786/2020|MT612326.1|20-05-27 +England/CAMB-7620F/2020|20-03-30 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 +England/PHEC-1DF03/2020|20-04-08 +England/CAMB-1AB21F/2020|20-04-18 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 +England/QEUH-9DE381/2020|20-09-21 +England/QEUH-95E7D8/2020|20-08-06 +England/NOTT-111E3E/2020|20-06-10 +England/NOTT-111117/2020|20-05-03 +England/ALDP-68EFBC/2020|20-07-02 +England/ALDP-91F278/2020|20-06-23 +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 +USA/WI-UW-1202/2020|MW035373.1|20-08-06 +England/PHEC-16F19/2020|20-03-31 +England/GSTT-265D4DF/2020|20-03-19 +England/LIVE-A2765/2020|20-05-20 +England/ALDP-658C87/2020|20-07-03 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 +England/NORT-283BE4/2020|20-04-03 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +England/BRIS-123EDF/2020|20-04-08 +England/BRIS-123F09/2020|20-04-08 +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 +England/ALDP-9ECEAD/2020|20-05-05 +England/BRIS-12DC53/2020|20-05-02 +Scotland/QEUH-7B078B/2020|20-07-19 +England/MILK-993EA5/2020|20-08-22 +England/BRIS-124C89/2020|20-03-26 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 +England/LOND-D53CF/2020|20-04-15 +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +Scotland/EDB5196/2020|20-05-18 +Scotland/CVR3185/2020|20-04-28 +England/BRIS-127363/2020|20-04-24 +England/BRIS-127A40/2020|20-04-17 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 +England/MILK-99DE32/2020|20-08-31 +England/CAMB-83A9E/2020|20-04-15 +England/EXET-136ED9/2020|20-04-22 +England/ALDP-955D39/2020|20-06-12 +Switzerland/300258/2020|LR898536.1|20-10-01 +England/SHEF-D1D3E/2020|20-04-22 +England/SHEF-CBE43/2020|20-04-26 +England/CAMC-949688/2020|20-07-27 +England/SHEF-C3AED/2020|20-07-30 +England/ALDP-90D6AE/2020|20-06-24 +POL/PL_P12/2020|MT511068.1|20-03-31 +England/QEUH-99923A/2020|20-08-24 +England/MILK-825C54/2020|20-07-16 +England/MILK-9E2BDD/2020|20-09-20 +Northern_Ireland/NIRE-1088C3/2020|20-09-13 +England/MILK-99D755/2020|20-08-31 +England/MILK-99D764/2020|20-08-31 +England/ALDP-907D09/2020|20-06-22 +England/MILK-85E3E4/2020|20-07-18 +England/MILK-95862C/2020|20-06-11 +England/ALDP-94EF88/2020|20-06-16 +England/PHEC-219E0/2020|20-05-01 +England/LEED-2AA59E/2020|20-04-06 +England/ALDP-95A754/2020|20-06-13 +England/ALDP-95CEA8/2020|20-06-15 +England/MILK-629D13/2020|20-07-05 +England/PORT-2F5752/2020|20-10-13 +England/QEUH-96A4C3/2020|20-08-13 +England/SHEF-C13B7/2020|20-05-19 +England/SHEF-10B2E79/2020|20-05-16 +England/OXON-AEF9E/2020|20-04-07 +Wales/PHWC-162E7A/2020|20-05-19 +USA/WI-UW-982/2020|MT846668.1|20-07-21 +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 +USA/FL-QDX-228/2020|MT806770.1|20-04-18 +USA/VA-DCLS-0920/2020|MT929088.1|20-05 +England/ALDP-71D072/2020|20-07-01 +England/MILK-9573DB/2020|20-06-10 +England/ALDP-954C6A/2020|20-06-13 +England/ALDP-A524EB/2020|20-10-07 +Wales/ALDP-6C3E72/2020|20-07-01 +England/ALDP-5A15D0/2020|20-06-14 +Wales/PHWC-16881C/2020|20-04-21 +Wales/PHWC-3612C/2020|20-04-28 +England/PHEC-20B81/2020|20-04-16 +England/MILK-992E97/2020|20-08-26 +England/QEUH-95DD9B/2020|20-08-07 +England/MILK-9570D4/2020|20-06-10 +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 +DV_IZSPB_236_S50|LR992121.1|20-08-29 +England/SHEF-C184F/2020|20-08-31 +England/ALDP-9D8FFC/2020|20-09-18 +England/NORT-28B1EA/2020|20-04-18 +England/NORT-28B28D/2020|20-04-18 +England/MILK-62FD59/2020|20-07-05 +England/ALDP-90DDC7/2020|20-06-26 +USA/IL-UW-1082/2020|MT929034.1|20-07-27 +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 +England/LIVE-9BC33/2020|20-04-21 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 +England/CAMB-1B087F/2020|20-05-04 +England/PHEC-2223F/2020|20-04-30 +England/ALDP-5A2A49/2020|20-06-14 +England/ALDP-5A2D6E/2020|20-06-14 +USA/WA-S1407/2020|MT821568.1|20-05-19 +USA/WA-S1434/2020|MT821707.1|20-05-21 +England/CAMB-80B43/2020|20-04-11 +England/CAMB-7666D/2020|20-03-29 +USA/WA-S2573/2020|MT831840.1|20-06-17 +USA/WA-S2761/2020|MT947580.1|20-07-29 +England/ALDP-9BEB16/2020|20-09-09 +England/ALDP-A95376/2020|20-10-19 +England/QEUH-A9F5D0/2020|20-10-20 +England/QEUH-96AEF2/2020|20-08-15 +Scotland/CVR1557/2020|20-04-03 +Wales/PHWC-34610/2020|20-04-21 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 +England/CAMB-82060/2020|20-04-21 +England/CAMB-82E1B/2020|20-04-14 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 +Scotland/EDB300/2020|20-03-29 +Scotland/CVR3194/2020|20-04-28 +England/CAMB-1AA438/2020|20-04-17 +England/CAMB-1AFB7A/2020|20-05-02 +Wales/PHWC-48212D/2020|20-10-20 +England/QEUH-9C80B0/2020|20-09-10 +England/MILK-9C4087/2020|20-09-09 +England/QEUH-96F349/2020|20-08-17 +England/BIRM-5FC3B/2020|20-05-28 +England/PHEC-13ADF/2020|20-03-13 +England/BIRM-6529A/2020|20-09-30 +USA/WA-S2831/2020|MW077478.1|20-09-08 +England/NORT-282796/2020|20-03-28 +England/NORT-2839AE/2020|20-04-01 +England/ALDP-951E49/2020|20-06-10 +England/ALDP-9557A4/2020|20-06-12 +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 +IND/GBRC203a/2020|MT669321.1|20-06-07 +USA/WA-S2809/2020|MW077484.1|20-08-31 +England/QEUH-96E025/2020|20-08-18 +Scotland/QEUH-94375E/2020|20-08-02 +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +Switzerland/220001/2020|LR882220.1|20-07-24 +England/BIRM-6BECD/2020|20-11-17 +England/CAMC-946506/2020|20-07-15 +AUS/VIC2173/2020|MT972184.1|20-06-24 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 +England/ALDP-94A63C/2020|20-06-11 +England/ALDP-52A636/2020|20-06-01 +England/SHEF-D1CE6/2020|20-04-28 +England/SHEF-C0F96/2020|20-04-15 +England/QEUH-B10460/2020|20-11-02 +Scotland/QEUH-96D5CD/2020|20-08-20 +ZW-6983|LR963462.1|20-05-01 +ZW-6978|LR963455.1|20-05-01 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 +England/MILK-1169960/2021|21-01-25 +England/ALDP-952A44/2020|20-06-21 +England/QEUH-9B4A22/2020|20-09-07 +Netherlands/NA_359/2020|LR883961.1|20-04-07 +Netherlands/NA_589/2020|LR883868.1|20-04-05 +England/CAMB-1AE7FF/2020|20-04-29 +England/CAMB-762D2/2020|20-03-28 +England/MILK-A06194/2020|20-10-01 +England/CAMC-B32AA2/2020|20-11-05 +Scotland/EDB2049/2020|20-04-18 +Scotland/EDB2100/2020|20-04-19 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 +USA/WI-UW-269/2020|MT429191.1|20-04-06 +Wales/PHWC-340A9/2020|20-04-20 +Wales/PHWC-1667A8/2020|20-05-26 +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 +England/PHEC-14F5D8/2020|20-12-29 +USA/WA-S2992/2020|MW474166.1|20-08-12 +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 +USA/WI-UW-1126/2020|MT929103.1|20-08-13 +USA/WI-UW-1071/2020|MT929023.1|20-07-29 +USA/VA-DCLS-0481/2020|MT951936.1|20-05 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +KOR/YS006/2020|MW345824.1|20-06-04 +KOR/YS008/2020|MW345825.1|20-06-07 +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 +USA/WA-S1037/2020|MT642186.1|20-05-03 +USA/AK-PHL660/2020|MW173157.1|20-06-27 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 +USA/VA-DCLS-1006/2020|MT952676.1|20-06 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 +USA/UT-00495/2020|MT444543.1|20-04-02 +USA/UT-00353/2020|MT444564.1|20-03-27 +USA/UT-02970/2020|MW053933.1|20-05-01 +USA/UT-08378/2020|MW206039.1|20-05-26 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 +Scotland/EDB3598/2020|20-04-27 +Scotland/EDB2451/2020|20-04-23 +England/MILK-9934B2/2020|20-08-26 +Switzerland/240029/2020|LR880608.1|20-08-10 +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 +England/MILK-958598/2020|20-06-09 +England/ALDP-4F4092/2020|20-06-24 +England/LIVE-A91F7/2020|20-03-25 +England/CAMB-1AE865/2020|20-04-30 +England/BRIS-12C762/2020|20-05-13 +England/BRIS-127AD7/2020|20-04-16 +BHR/600023154_S29/2020|MW237743.1|20-10-14 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 +Scotland/QEUH-969725/2020|20-08-14 +England/QEUH-AD1648/2020|20-10-26 +England/CAMC-A3E658/2020|20-10-05 +England/MILK-A47DDF/2020|20-10-05 +England/LOND-DC4E3/2020|20-11-04 +England/MILK-99D3AC/2020|20-08-31 +IND/GBRC-366a/2020|MT951170.1|20-06-18 +IND/GBRC-392b/2020|MT954593.1|20-07-06 +Switzerland/310517/2020|LR898824.1|20-10-08 +England/MILK-9AB1A1/2020|20-08-31 +SAU/596/2020|MT755893.1|20-02-18 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 +England/ALDP-B75065/2020|20-11-12 +Scotland/QEUH-AD4AFE/2020|20-10-27 +SAU/578/2020|MT755891.1|20-02-17 +Scotland/EDB6640/2020|20-05-28 +England/PHEC-1491AD/2020|20-10-17 +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 +England/MILK-EB78C6/2021|21-01-02 +England/CAMC-C44338/2020|20-12-10 +England/ALDP-EEACDD/2021|21-01-03 +England/LIVE-DDCD09/2021|21-01-02 +England/MILK-ACEE55/2020|20-10-21 +Switzerland/260079/2020|LR882418.1|20-08-25 +Scotland/EDB6391/2020|20-05-13 +Scotland/EDB5108/2020|20-03-31 +USA/VA-DCLS-0489/2020|MT951943.1|20-05 +USA/VA-DCLS-1388/2020|MW067734.1|20-07 +Scotland/QEUH-961BB8/2020|20-08-02 +Switzerland/250091/2020|LR881897.1|20-08-19 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 +Switzerland/300264/2020|LR898541.1|20-10-01 +England/QEUH-963433/2020|20-08-10 +Scotland/CVR2213/2020|20-04-11 +Scotland/CVR1909/2020|20-04-06 +England/MILK-BB0022/2020|20-11-18 +England/MILK-BB0031/2020|20-11-18 +England/QEUH-9B3A8D/2020|20-09-04 +England/NORW-F1F9C/2020|20-10-24 +England/PHEC-14E15D/2020|20-12-09 +England/PHEC-149635/2020|20-10-28 +England/ALDP-A95DE1/2020|20-10-20 +England/ALDP-9E75E9/2020|20-09-25 +England/MILK-AC7B0A/2020|20-10-21 +England/NOTT-11336A/2020|20-09-16 +England/MILK-A799FE/2020|20-10-15 +England/CAMC-A417F5/2020|20-10-06 +England/QEUH-AE2A48/2020|20-10-26 +England/ALDP-A68CF9/2020|20-10-12 +England/CAMB-1B6439/2020|20-09-22 +England/MILK-9F1898/2020|20-09-25 +England/MILK-A7CDC2/2020|20-10-13 +England/CAMC-A5845E/2020|20-10-08 +England/ALDP-AA10DA/2020|20-10-22 +Wales/PHWC-4815AA/2020|20-10-13 +Northern_Ireland/NIRE-FB967/2020|20-08-17 +England/QEUH-7A4BBB/2020|20-07-14 +USA/WA-S2264/2020|MT831437.1|20-06-09 +USA/WA-S1922/2020|MT831459.1|20-06-03 +England/CAMB-83FF9/2020|20-04-25 +England/CAMB-75895/2020|20-03-18 +USA/WA-S2012/2020|MT831128.1|20-06-04 +USA/WA-S1775/2020|MT834200.1|20-06-01 +England/ALDP-B82A0D/2020|20-11-14 +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 +England/LOND-D6EBE/2020|20-04-03 +England/SHEF-C88A2/2020|20-04-21 +USA/WA-S860/2020|MT642111.1|20-04-24 +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 +England/QEUH-A0AFB4/2020|20-10-01 +England/ALDP-C48747/2020|20-12-12 +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 +Switzerland/230051/2020|LR882355.1|20-08-04 +Wales/MILK-9C729D/2020|20-09-12 +England/BRIS-12A70A/2020|20-05-01 +England/CAMB-77F61/2020|20-04-01 +England/QEUH-9AE4E1/2020|20-09-01 +England/MILK-A180DE/2020|20-10-01 +England/MILK-99D597/2020|20-08-30 +England/NORW-EE34B/2020|20-03-24 +England/NORW-E8693/2020|20-04-16 +Scotland/QEUH-96C6AD/2020|20-08-07 +Switzerland/270108/2020|LR882077.1|20-09-03 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 +England/CAMB-81070/2020|20-04-20 +Scotland/CVR41/2020|20-03-13 +England/QEUH-962E81/2020|20-08-10 +England/QEUH-96E605/2020|20-08-17 +England/QEUH-9F9265/2020|20-09-26 +England/QEUH-98EE43/2020|20-08-25 +England/NORW-E8709/2020|20-04-18 +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 +England/QEUH-9600C9/2020|20-08-05 +England/QEUH-9B92F8/2020|20-09-07 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 +England/CAMB-76490/2020|20-03-30 +England/CAMB-7CBD1/2020|20-04-05 +Japan/TKYE630414_2020/2020|LC593818.1|20-08 +Japan/TKYE622411_2020/2020|LC593808.1|20-07 +England/MILK-A18C8F/2020|20-10-03 +England/ALDP-C3C1FD/2020|20-12-10 +Wales/PHWC-15E0B7/2020|20-05-13 +Wales/PHWC-30957/2020|20-04-08 +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 +LC573289.2|20-06 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 +England/CAMB-74D5B/2020|20-03-19 +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 +Wales/PHWC-1645BF/2020|20-05-06 +Wales/PHWC-33C88/2020|20-04-17 +England/MILK-ABBCCA/2020|20-10-21 +England/MILK-ACCF27/2020|20-10-21 +Wales/PHWC-16578B/2020|20-06-07 +Wales/PHWC-166104/2020|20-05-15 +England/BRIS-125D67/2020|20-03-29 +England/BRIS-12C841/2020|20-05-12 +England/ALDP-94D8F7/2020|20-06-20 +England/NOTT-111BFB/2020|20-05-29 +England/MILK-8664D7/2020|20-07-17 +England/MILK-993300/2020|20-08-26 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 +Wales/PHWC-162751/2020|20-05-27 +England/ALDP-497D12/2020|20-06-03 +England/ALDP-9D9104/2020|20-09-18 +England/CAMC-A40F67/2020|20-10-06 +Scotland/QEUH-A00DF0/2020|20-10-02 +England/ALDP-9CC5BD/2020|20-09-15 +England/QEUH-9B6EAC/2020|20-09-09 +England/NORT-2A4CAE/2020|20-09-17 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 +Northern_Ireland/NIRE-FB369/2020|20-08-31 +England/LEED-2AA4EC/2020|20-04-06 +England/LEED-2AA394/2020|20-03-31 +England/BRIS-1854318/2020|20-04-28 +England/BRIS-12E6FA/2020|20-04-20 +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 +England/ALDP-5D52BE/2020|20-06-18 +England/ALDP-6FAF24/2020|20-06-29 +England/MILK-B01F25/2020|20-10-23 +Switzerland/210050/2020|LR882268.1|20-07-19 +England/ALDP-691499/2020|20-07-02 +England/ALDP-4A2BFC/2020|20-05-22 +England/ALDP-9B5BC4/2020|20-08-28 +England/ALDP-49F5B8/2020|20-05-22 +USA/WA-S2598/2020|MT831859.1|20-06-18 +USA/WA-S1840/2020|MT834024.1|20-05-27 +USA/WA-S1246/2020|MT821587.1|20-05-11 +USA/WA-S820/2020|MT641503.1|20-04-15 +Netherlands/NA_436/2020|LR883367.1|20-04-07 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 +England/CAMC-B36516/2020|20-11-05 +England/CAMC-B362D3/2020|20-11-05 +England/MILK-B3A284/2020|20-11-01 +England/CAMC-B365AD/2020|20-11-05 +AUS/VIC3114/2020|MT972550.1|20-07-06 +AUS/VIC9664/2020|MW156172.1|20-08-12 +AUS/VIC13094/2020|MW185501.1|20-07-31 +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 +Poland/1/2020|LR899030.1|20-05-20 +England/CAMC-947259/2020|20-07-21 +England/MILK-9927C9/2020|20-08-27 +USA/COVID20-0537/2020|MT981422.1|20-06-04 +USA/COVID20-1129/2020|MW067826.1|20-07-10 +England/QEUH-CAF17D/2020|20-12-15 +USA/COVID20-0777/2020|MW002812.1|20-06-26 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 +USA/VA-DCLS-1512/2020|MW197472.1|20-07 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 +USA/1453xE2/2020|MW521402.1|20-07-05 +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 +USA/WA-S2867/2020|MW173410.1|20-09-20 +England/MILK-6166F0/2020|20-07-05 +England/ALDP-9BCA93/2020|20-09-09 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 +England/CAMC-947D3A/2020|20-07-17 +USA/WI-UW-1194/2020|MT981478.1|20-08-11 +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 +USA/UT-05592/2020|MW054143.1|20-06-01 +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 +England/ALDP-955F15/2020|20-06-08 +England/MILK-9A6856/2020|20-08-31 +England/ALDP-94EB75/2020|20-06-17 +England/ALDP-6E2806/2020|20-07-01 +England/MILK-5642D2/2020|20-06-10 +England/CAMB-1B3593/2020|20-05-26 +England/SHEF-CDD62/2020|20-05-27 +England/SHEF-10B22B9/2020|20-04-20 +Scotland/QEUH-A9E7BD/2020|20-10-20 +Scotland/EDB7778/2020|20-09-16 +England/QEUH-9B703C/2020|20-09-09 +England/MILK-970CE0/2020|20-08-18 +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 +England/CAMC-1263B05/2021|21-02-10 +England/QEUH-AD3822/2020|20-10-26 +England/SHEF-10C9BD2/2020|20-12-20 +England/SHEF-10CC3AA/2020|20-12-17 +England/MILK-9A94E6/2020|20-09-01 +England/MILK-566C5A/2020|20-06-12 +England/CAMC-C2CDFC/2020|20-12-07 +England/MILK-CAA0EE/2020|20-12-18 +England/MILK-A1BC04/2020|20-10-03 +England/QEUH-96A29C/2020|20-08-13 +England/ALDP-9EA6D4/2020|20-09-24 +England/MILK-A6AEC4/2020|20-10-09 +England/MILK-B889A0/2020|20-11-14 +England/MILK-ACC08E/2020|20-10-21 +England/ALDP-9BE8B5/2020|20-09-09 +Scotland/EDB10724/2020|20-12-04 +Scotland/CVR4309/2020|20-09-14 +England/QEUH-AE4EA4/2020|20-10-27 +England/ALDP-9BECB9/2020|20-09-10 +Wales/PHWC-16E6A3/2020|20-10-02 +England/MILK-9A9D09/2020|20-09-01 +England/QEUH-B6C0E9/2020|20-11-11 +England/CAMC-AEA62E/2020|20-10-25 +Wales/PHWC-360A7/2020|20-04-29 +Wales/PHWC-260AA/2020|20-03-24 +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 +England/MILK-11A5634/2021|21-01-29 +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 +England/NORW-222D0F/2020|20-12-20 +England/MILK-F72F49/2021|21-01-05 +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +England/ALDP-94DD07/2020|20-06-19 +England/ALDP-49EC3C/2020|20-05-20 +PER/covper024/2020|MW030255.1|20-07-04 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 +PER/covper011/2020|MW030242.1|20-07-04 +PER/covper040/2020|MW030271.1|20-05-05 +England/MILK-B1553B/2020|20-10-23 +England/MILK-66F889/2020|20-07-03 +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 +England/LOND-12F65DC/2021|21-01-19 +Switzerland/310500/2020|LR898805.1|20-10-08 +Switzerland/300433/2020|LR898634.1|20-09-29 +England/QEUH-96BAA2/2020|20-08-14 +Wales/ALDP-B19FFD/2020|20-11-01 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +PER/covper018/2020|MW030249.1|20-07-03 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +England/MILK-9A699F/2020|20-09-01 +England/CAMC-C3E586/2020|20-12-10 +England/CAMC-DE5550/2020|20-12-29 +England/ALDP-A525BB/2020|20-10-07 +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 +England/MILK-A45AF8/2020|20-10-06 +Scotland/QEUH-A613BF/2020|20-10-13 +Switzerland/180039/2020|LR861669.1|20-07-01 +Switzerland/220022/2020|LR882244.1|20-07-27 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 +Japan/TKYE624705_2020/2020|LC593810.1|20-07 +IND/GBRC455b/2020|MW600453.1|20-12-24 +IND/GBRC455a/2020|MW600436.1|20-12-24 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 +USA/WI-UW-114/2020|MT706234.1|20-03-30 +England/CAMC-947392/2020|20-07-18 +England/MILK-977469/2020|20-07-24 +AUS/VIC9179/2020|MW153248.1|20-08-21 +AUS/VIC11646/2020|MW155572.1|20-07-22 +Scotland/EDB11343/2020|20-12-26 +Scotland/EDB11342/2020|20-12-26 +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 +England/CAMC-A65DDB/2020|20-10-11 +England/CAMC-AAF5A0/2020|20-10-22 +England/MILK-A192C8/2020|20-10-01 +England/QEUH-9F3FDD/2020|20-09-24 +England/MILK-ABBF2B/2020|20-10-22 +England/QEUH-96A85E/2020|20-08-14 +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 +England/PHEC-149F0D/2020|20-11-19 +England/MILK-BE717A/2020|20-11-29 +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 +Scotland/QEUH-BEAF22/2020|20-12-04 +England/MILK-A230C1/2020|20-10-03 +Scotland/QEUH-9696CE/2020|20-08-14 +England/CAMC-B3582D/2020|20-11-05 +England/MILK-A796E8/2020|20-10-14 +Northern_Ireland/QEUH-969C53/2020|20-08-14 +England/ALDP-9E79B0/2020|20-09-24 +England/MILK-B561FE/2020|20-11-06 +England/CAMC-9DFBC4/2020|20-09-21 +England/QEUH-AD1165/2020|20-10-25 +England/ALDP-FB5E3E/2021|21-01-11 +England/ALDP-E8756E/2021|21-01-04 +England/ALDP-A2EAE6/2020|20-10-05 +Scotland/QEUH-A636C3/2020|20-10-10 +England/QEUH-A76C07/2020|20-10-12 +England/MILK-AC7997/2020|20-10-21 +Scotland/QEUH-9DC927/2020|20-09-22 +Scotland/QEUH-9B75D3/2020|20-09-04 +England/CAMC-AEACFF/2020|20-10-25 +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 +England/MILK-97356A/2020|20-08-14 +England/MILK-9A9F7C/2020|20-08-31 +England/OXON-F42364/2020|20-12-18 +England/MILK-9C2766/2020|20-09-10 +England/ALDP-A95A9F/2020|20-10-19 +England/PHEC-149FA3/2020|20-11-20 +England/QEUH-C9332B/2020|20-12-17 +England/CAMC-A649C9/2020|20-10-10 +England/MILK-B04890/2020|20-10-24 +England/CAMC-A57F03/2020|20-10-09 +England/MILK-A7D15C/2020|20-10-13 +Wales/PHWC-47F3A5/2020|20-10-07 +England/ALDP-A85BCC/2020|20-10-17 +England/ALDP-A2FCA3/2020|20-10-05 +Scotland/MILK-A69E6B/2020|20-10-09 +England/MILK-A7D1A7/2020|20-10-13 +England/MILK-A91486/2020|20-10-16 +AUT/2021006354/2021|MW672357.1|21-02 +England/MILK-E7F4C6/2021|21-01-02 +England/ALDP-AA169C/2020|20-10-22 +England/MILK-A474DA/2020|20-10-06 +England/ALDP-B483EA/2020|20-11-07 +England/QEUH-AA0035/2020|20-10-20
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_17_all_paths.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1935 @@ +1 +2 C24034T +England/BRIS-1853249/2020|20-04-02 C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 +3 C875T +Wales/PHWC-25B04/2020|20-03-24 A20637G +Wales/LIVE-A6831/2020|20-03-16 T14859C +4 C7423T +Scotland/EDB1317/2020|20-04-09 G4207A,T7423C +Scotland/EDB354/2020|20-03-30 A29780C +5 C20270T +England/SHEF-BFF8B/2020|20-03-25 C1473T +6 A29683T +7 A18671G +England/LCST-24D7202/2020|20-06-22 C4021T,A9963T,T24027C +England/SHEF-BFF21/2020|20-03-25 +England/LIVE-A4C46/2020|20-03-12 G431A,G26754A,C28725T +8 T4949C +England/SHEF-BFFC7/2020|20-03-25 G28027T +England/PHEC-1E01E/2020|20-04-03 C22445T +9 C29635T +DP0476/2020|LC571003.1|20-02-16 C29592T +DP0191/2020|LC570980.1|20-02-15 A3854G +10 C14805T,G26144T +11 T17247C +12 C12400T +Switzerland/100159/2020|LR884273.1|20-03-16 C16995T +England/LOND-126031F/2020|20-03-15 A20511G +Scotland/EDB046/2020|20-03-15 C9996T,T26144G +13 C8078T +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +14 A7479G,C25572T +Wales/PHWC-285F4/2020|20-04-01 G12191T,G16188T,C19524T,C28887T +England/BRIS-130965/2020|20-04-13 C10741T,C27498T +15 A1587G +Scotland/CVR44/2020|20-03-13 G443A +Scotland/CVR839/2020|20-03-27 T7816A,C24023T +16 C988T +Scotland/GCVR-170107/2020|20-03-23 G1857T,A5570G,A9483G +Scotland/CVR207/2020|20-03-18 G12832A +17 A1515G,C9223T +England/NORT-284A9B/2020|20-03-25 G28655A,C28657T +Scotland/CVR10/2020|20-03-10 T9223C,A21625G +England/EXET-135818/2020|20-04-11 C7703T,T9352C,G27201T +18 G28842T +England/BRIS-12EEB6/2020|20-04-22 C15240T,C18086T,T23031C +Scotland/EDB199/2020|20-03-26 C22713T,G26031T +19 C23707T +England/CAMB-74A09/2020|20-03-18 G6981T,G10112T,G22785T +England/ALDP-9EE3AC/2020|20-05-06 G20991T +20 A2480G,C2558T +England/CAMB-8042A/2020|20-04-10 A4015T +England/CAMB-737B8/2020|20-03-30 G3971T,G28380T +21 A4236G,T25655C +USA/WA-S885/2020|MT642386.1|20-04-22 G7739T,C25904T +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 A5269G,C9943T +22 G5572T +USA/WA3-UW1/2020|MT163716.1|20-02-27 T2446C,C3411T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 C28311T +23 G13627T,C15540T,A28338G +England/BRIS-1265AA/2020|20-04-10 T9046C,C11779A,C27688T +AUS/NT38/2020|MT641726.1|20 G1599T,C3096T,C12781T,G17944T +24 A10982G +England/LIVE-A5D06/2020|20-03-17 C6681T,G11801A +England/LIVE-A065B/2020|20-05-27 C823T,C8752T,A9741C,C19961T,C26333T,C26408T +25 C241T +26 C14408T +France/40002VJ/2020|MT470179.1|20-03 C2416T,G12079C,C23220A +27 A23403G +Wales/PHWC-310CA/2020|20-04-11 A2480G,A12529G,T14408C,G26144T +28 C3037T +29 G7042T,G8861T +England/BRIS-123965/2020|20-04-07 C5806T,C10450T +England/BRIS-125347/2020|20-03-27 +30 C4809T +IND/Isolate_9088/2020|MW555597.1|20-06-30 G14245A,G28325A +IND/763/2020|MT577009.1|20 +31 G25429T +32 C16289T +England/CAMB-76515/2020|20-03-29 T25429G +England/CAMB-1AE294/2020|20-04-27 T4587A,G12833A,C15824T +33 C13730T +England/LEED-2A8D10/2020|20-03-31 C25916T +England/CAMB-1AC6F4/2020|20-04-21 C6558T,G9130T,G26529T +34 C25916T +35 A10874G,T26677C +36 G25440A,G29745T +Scotland/EDB2049/2020|20-04-18 T25916C +Scotland/EDB2100/2020|20-04-19 +England/CAMB-1AC7D3/2020|20-04-22 A13863G +England/CAMB-7EBDF/2020|20-04-07 A13433G,C18377T +37 C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +England/MILK-BB0F16/2020|20-11-17 G7675T,C12406T +England/CAMC-BBDD4C/2020|20-11-22 C2939T,C5934T,C21635T,T27988C,C28775T +38 G17278T,C19610T,T26906C,G29688T,G29757T +Scotland/CVR2381/2020|20-04-13 C1848T +Scotland/CVR2197/2020|20-04-11 G21776T +39 A28841G +Scotland/CVR3417/2020|20-05-07 G3689A,T11660A,C29743T +Scotland/CVR1519/2020|20-04-03 A6441G +40 G1141T +England/MILK-93B73B/2020|20-06-21 C3817T,C25160T,C28099T +England/MILK-9589F6/2020|20-06-15 C7488T,C14396T +41 C28045T +England/BRIS-128441/2020|20-04-16 G10324T,C22713T +England/CAMB-7C39D/2020|20-04-13 G2885T,G26458C,C29253T +42 C3602T,A24232G +England/NORW-E8C37/2020|20-04-13 C11460T +England/NORW-E75A6/2020|20-05-04 T3602C,C6538T,T21206G +43 G1589A,G29474T +Wales/PHWC-3122E/2020|20-04-10 A22457G +Wales/PHWC-1645EC/2020|20-05-10 A11438G +44 G21538T +England/ALDP-50085E/2020|20-06-27 T11164G,G15406T,G22332A,G27583T,G29427T +England/PHEC-127E8/2020|20-03-28 +45 G28514T +England/CAMB-75BD8/2020|20-03-29 C18060T +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 T4579A,C5175T,T18552C,C25521T,G27877T +46 G1914A,T16456C +England/ALDP-9ED9F6/2020|20-05-05 C10681T,G16855T,C26060T,C29614T +England/ALDP-944BD9/2020|20-06-07 G4399T,G27746T +47 C25665T,G28325T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 G16075T +48 C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +USA/WA-S3017/2020|MW474188.1|20-08-15 G4508A,T7884C,C21811T +USA/WA-S2852/2020|MW079820.1|20-09-01 C17795T,G26230T +49 G3871T +USA/WI-UW-26/2020|MT706147.1|20-03-24 A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 C19862T +50 C2939T +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 C6401T,C18877T,G28882T +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 T11698C,C18322T +51 A696C +USA/IN-QDX-184/2020|MT786818.1|20-04-28 G3871T,T27299C +USA/WI-UW-558/2020|MT750137.1|20-06-25 +52 G24077T +AUS/VIC2260/2020|MT972173.1|20-06-22 G14294A,A23746G,T24077A,A29622C +England/EXET-1358BE/2020|20-04-15 A20092G,T28630G +53 G25563T +54 C8389T +55 G27915A +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 C815T,C3411T,T10795C,A17521G,C18452T +56 C601T +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 A17521G,A22206G +57 G12832T +USA/COVID20-0537/2020|MT981422.1|20-06-04 C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 A28165G +58 G1319A +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 C23551T,G27084T +59 G2945A,C10156T +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 T17208C +USA/WI-UW-269/2020|MT429191.1|20-04-06 A23588T,C27657T +60 C23453T +England/LEED-2A91D7/2020|20-04-06 T1778C,C6762T,C28849T +England/LEED-2A87C7/2020|20-04-03 G3230A +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 C1997T +61 C1059T +62 C24381T +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 C23718T +63 C24442T +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +64 A13512T,G13513T,G13514A +USA/WA-UW-4105/2020|MT358746.1|20-03-31 T1333A,T1334A +USA/WA-UW-2220/2020|MT345839.1|20-03-23 T1059C,C15763T,T25563G +65 G1298A +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 C344T,C5090T,C10228T,A22001G +66 T20037C +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 G2900T,C23179T +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 G28073T +67 T1059C,C1594T,C11109T +England/CAMB-7A7DF/2020|20-04-02 G8578A +Netherlands/NA_18/2020|LR878352.1|20-03-09 C23506T +68 C18555T,C28892T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 A6035G +69 C2668T +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 C1912T,G2867T,C12651T +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 T18240C,T28009C +70 G24368T +71 C10376T,G18583T,G29773T +Wales/PHWC-340A9/2020|20-04-20 G7675T,G18318T,T21745C,C27610T +Wales/PHWC-1667A8/2020|20-05-26 C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C +72 A3103C,C5893T,A28117T +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 A28356G +73 A10323G +74 T15276A,G28842T +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 G11417T,A15276T,G20679T,T21291C +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T +75 G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +England/PHEC-14F5D8/2020|20-12-29 C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A +76 A22206G +77 A2692T,C21614T,C26645T +Scotland/EDB11343/2020|20-12-26 G9049T,C20405T,A25806G +Scotland/EDB11342/2020|20-12-26 A4459G,A18846G +England/QEUH-CAF17D/2020|20-12-15 C9142T,C19524T +78 C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +England/LIVE-DAB556/2020|20-10-18 G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C +England/PHEC-14DE93/2020|20-11-11 G204T,C6286T,C21614T,C22227T,T26424C +79 G24368T,C24621T +Wales/PHWC-1658A6/2020|20-05-19 G2830A,A2903G,C7869T +Wales/PHWC-2E0A2/2020|20-04-10 C18568T +80 C18744T,A18978G,A29391G +England/ALDP-952A53/2020|20-06-13 C1190T,G25273T,C29249T +England/ALDP-95A745/2020|20-06-13 G11708A,C14724T,C17550T +81 C4999T,C13730T +Scotland/EDB3137/2020|20-04-06 G25494T,C29719T +Scotland/EDB2810/2020|20-03-30 C19113T,T21752C +82 A2018G,C18029T +USA/CA-QDX-434/2020|MW064457.1|20-03-20 C8697T,T18029C +USA/UT-02231/2020|MT444626.1|20-04-15 C2445T,G20890A,G25947T,G28373T,G28374T +83 C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +USA/WA-S2850/2020|MW079819.1|20-09-01 A4935G,T26510C,G29736T,C29762G +USA/WA-S2746/2020|MT947577.1|20-07-19 +84 G19542T,C23551T,C28821A +USA/WI-UW-879/2020|MT846567.1|20-07-14 G3403T,G13201T,C26527T +USA/UT-05590/2020|MW084605.1|20-06-01 A2151G +85 G18281A,A20755C,G25784T +Netherlands/NA_588/2020|LR883860.1|20 A20742G +Netherlands/NA_583/2020|LR883819.1|20 C4113T,C6555T,C25731T +86 C11916T +87 G1990T,C2939T,A5264G,C16457T +USA/WA-S2992/2020|MW474166.1|20-08-12 G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 G596A,G1820A,G9526T,C14183T,C28344T +88 G28376T +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +89 G26020T +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 C4012T +90 G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 C8109T +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 T12925C +91 C18998T,G29540A +92 A20553G +USA/COVID20-0777/2020|MW002812.1|20-06-26 G4285A,G6421C,C16173T +USA/VA-DCLS-1147/2020|MT992749.1|20-04 G22487C +93 G25947C +USA/VA-DCLS-1512/2020|MW197472.1|20-07 G526T,T6949C,C29366T,C29750T +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 C23685T,G27703T +94 C28863T +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T +95 C19145T +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 G4285T,T5059C,C16230T,C23525T,G25471T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 C5540A +96 T13914C +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 G3638A,C16217T +97 C10458T,G26828T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 C18693A +USA/1453xE2/2020|MW521402.1|20-07-05 G7042T,C11396A,C21855T,G28655T +98 A9984C,G25445T +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 A9935G,T16632C,C19185T,C28824T,G29628T +USA/WA-S2867/2020|MW173410.1|20-09-20 G9278A,G11693T,C14937T,C21017T,C21219T +99 C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T +England/MILK-6166F0/2020|20-07-05 T22912G +England/ALDP-9BCA93/2020|20-09-09 C782T,G1210T,C28045T +100 G26217T +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 C21731T,G29645T +England/CAMC-947D3A/2020|20-07-17 G105T,T10288C,C13821T,C26625T,A29752T +101 C715T,A23586G +USA/WI-UW-1126/2020|MT929103.1|20-08-13 G487A,C4876T,A5877G,C18555T,A27489G,C28045T +USA/WI-UW-1071/2020|MT929023.1|20-07-29 G1957T,C2623T,C13115T,G22026T +102 C13252T +USA/VA-DCLS-0481/2020|MT951936.1|20-05 C799T,C6701T,C23604T +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +103 C16650T,A20675T,G29179T,G29779T +KOR/YS006/2020|MW345824.1|20-06-04 C26261T +KOR/YS008/2020|MW345825.1|20-06-07 +104 G28027T,G29742T +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 C12754T,A14012T,G14250T,C22687T +USA/WA-S1037/2020|MT642186.1|20-05-03 A18671C,C25466T +105 G1738T,C11916T,C28087T +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 G3242A,T11449C,T14508C,A26126T,T28087C +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 G9928T,A20716G,A24383G,G25538T,G28123T +106 A12820G,C16762T,A17637G,C20762T,C28887T +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 C676T,A3536G,C29370G +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 +107 C379A +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 C10369T,C12115T,G12202T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 A20503G +108 C27964T +USA/WA-UW-2108/2020|MT345811.1|20-03-24 G3259T,T27964C +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 G14580A,T19527C,A19821G,G22346T,C28099T,C29722T +109 C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +USA/AK-PHL660/2020|MW173157.1|20-06-27 A16872C +110 G9928T +USA/WI-UW-1194/2020|MT981478.1|20-08-11 C10377T +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 A16148G,C16928T,G29422T +111 T833C +112 A22320G +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 C3411T,G8114A,C11095T,G15908A +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T +113 G9705T +USA/UT-05592/2020|MW054143.1|20-06-01 A3121C,G23009T,G27637A,C29743T +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 C8389T,T19839C,G25523T,T29685G +114 C28833T +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 C3817T,A23813G +115 C9967T +USA/VA-DCLS-1006/2020|MT952676.1|20-06 T18641C,C23208T,G25793T,C27807G +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 G17590T +116 G10902A +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 C7173T,G11596T,C13994T,C25546T +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 G2659T,C3622T,G7936T,T9379A,A12148G,C18687T +117 G17808T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 C15352T +118 C24378T +USA/UT-00495/2020|MT444543.1|20-04-02 G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 T11131A +119 C4878T,A22525G,C29272T,G29449T +USA/UT-02970/2020|MW053933.1|20-05-01 A22681C,G28202A +USA/UT-08378/2020|MW206039.1|20-05-26 C222T,A454G,C11750T,T17772C,G21099T,T29449G +120 G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +USA/IL-UW-1064/2020|MT929016.1|20-07-26 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 G7936A,A8040G,G29402T +121 A19899T,A21464G +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 G4232T,C9120T,A18500G,G22093A,T23296C,G25444A +122 C25777T,C29614T +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 G23311T,G24977C +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 G25471C,G28899T,G29779T +123 T8788C,G26951A +England/CAMB-7771E/2020|20-03-30 C4586T +England/CAMB-7DC91/2020|20-04-05 C4321T +124 C7528T +USA/WI-UW-1092/2020|MT929042.1|20-07-27 G271T,T13270C,C28093T,C28890T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 G8213A +125 C775T,C27923T,G28975T +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 C23683T +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 C3044T,C9979T,C10369T,G19072T +126 A12557C +USA/WA-QDX-235/2020|MT806806.1|20-04-27 A23534T +USA/WA-S1266/2020|MT821676.1|20-05-13 T4441C,G6125A,C17639T +127 C1917T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 G29431T +128 C23191T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 A25910C +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 C9907T,C17125T,T18144C +129 G15906T +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 C5548T,C28153T +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T +130 C10582T +131 C1076T +Scotland/EDB3598/2020|20-04-27 G22244T,C26461T +Scotland/EDB2451/2020|20-04-23 T10963A +132 C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +England/MILK-9934B2/2020|20-08-26 C9246T,C11747T,C13378T,G19056T,C28744T +Switzerland/240029/2020|LR880608.1|20-08-10 T27622C +133 C28887T +134 C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +135 G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T +136 G9738C,G13713A,C16394T +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 A9492C,C21638T,C25919T +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 C11345T,C13860T +137 C2395T,T2597C,A12878G,T24349C,G27890T +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T +138 C8947T,C12100T +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 C1380T,C6539T,T7813C,A10417G,A19476G,C21638T,G22708T,G28628T,T29362C +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 C1601T,C4918T +139 T1171C,A5747G,C10789T,G17259T,G24007A +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 C10228T,C13335T,T14408C,C25611T,G29705T +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G +140 C6843T,T11764C,G29402T +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 T21294C,G28936A,A29115T +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 C13176T,T17040C,C24106T +141 C28893T +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 G22021A,C22998T,G23501T +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T +142 T9070C +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 C20325T +USA/CA-CZB0731/2020|MT385450.1|20-03-31 G9049T,T10960C +143 C25688T +144 C4320T +England/MILK-958598/2020|20-06-09 C5175T,A15283G,G16861T,C20844T,T27539C +England/ALDP-4F4092/2020|20-06-24 C1627T,C11494T,C14076T,T18309C,G20670A,C29529T +145 T13006C +England/LIVE-A91F7/2020|20-03-25 C19186T +England/CAMB-1AE865/2020|20-04-30 C1437T,A24070T,C26013T,C27945T +146 G3892T +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 G20062T +147 C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 G2272A,C7267T,G21193T +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 A5368G,C14220T,G21193T,C29363T +148 C16260T,C28821A +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 C5979T,A9337G,C18695T +USA/IL-UW-385/2020|MT772536.1|20-05-23 C12525T,G21604T,C25728T,G28378T +149 C20555T,C21772T +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 A6414G,A22101T,G24872T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 C16428T +150 G25523T,T27869C +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 C3044T +USA/WA-UW-2008/2020|MT326031.1|20-03-24 G4975T,T29194C +151 T20049C,C21627A,C23655T +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 C11102T,A12174G +USA/UT-03041/2020|MW053962.1|20-05-01 C22295T,C22323T +152 C66T,C17069T,C26801T +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 C13761T +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 A26864T +153 C26625T +USA/WA-UW-6327/2020|MT412324.1|20-04-02 C5240G +USA/WA-UW-3832/2020|MT358685.1|20-03-26 C3141A,C17766T +154 C27847T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 C6628T +155 T8041C,G22225T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 C18029T +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 G26828A,C28005T +156 C335T,T16425G +USA/WA-S2725/2020|MT947550.1|20-07-07 G248T,T4138G,C9120T,A12197C,C15951T,G16425T,G22918T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 G526C +157 T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 C1912T,C21058T,G21468T,G25681A,C27603T +USA/WI-UW-994/2020|MT846680.1|20-07-20 +158 C1968T,G29705T +England/BRIS-128CA3/2020|20-04-14 C4586T,C29738T +England/BRIS-12B1CF/2020|20-05-15 C7843T,C9438T,T15254C,T16062C +159 G28808T,G29434C +England/BRIS-12C762/2020|20-05-13 G10096A,G23755T,G24199T +England/BRIS-127AD7/2020|20-04-16 G3638T +160 C5310T,C12294T,C25511T +USA/WI-UW-491/2020|MT750074.1|20-06-11 C2003T,T22825C +USA/WI-UW-522/2020|MT750102.1|20-06-24 +161 C11919T +USA/DC-HP00089/2020|MT509482.1|20-03-31 C9510T +USA/UT-03817/2020|MT873871.1|20-04-03 A13440G,C21998T +162 G1463A,G7557A,C8818T +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 C3264T,G21204T +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 A20284G,C22477T,C23604T +163 C5183T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 G28878T +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 A361G,C27596T +164 C25976A +USA/MI-QDX-620/2020|MW064645.1|20-03-17 G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 C18981T +165 C7851T,C20233T +England/BRIS-12D9F2/2020|20-05-06 A20262G +England/BRIS-12B156/2020|20-05-08 A13707G +166 C25572T +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 G29747T +AUS/VIC1161/2020|MT451779.1|20-04-09 C18744T,C29284T +167 C16762T +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 G4105A,C4878T,G10759T,G18803T,A24478T,C29296T +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T +168 G29291A +England/OXON-B15A5/2020|20-04-29 C6627T,A11740T,G18984T,C24023T +England/BRIS-129D72/2020|20-04-15 C1593T,C10440T +169 A27821G +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 C2878T,G3146A +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 G7405T,G11113A,C12225T,G25437T,C25516T +170 G2286A,A4197G,G7954T,A10552G,A28715T +USA/VA-DCLS-1282/2020|MW067700.1|20-08 C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T +USA/COVID20-1144/2020|MW067817.1|20-07-10 T25577G +171 C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 G26730T +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 C5140T,G29290A +172 C1887T +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 A27979T +173 C829T,G28371T +Wales/PHWC-1662B6/2020|20-06-13 G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A +Wales/PHWC-26B12/2020|20-03-29 +174 C10851T +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 T3037C +USA/CT-UW-4372/2020|MT345874.1|20-03-30 C3768T,C25584T +175 C5312T,G27852T +England/BRIS-12BF3E/2020|20-05-09 G4960T,C6633T,T10732C,T20285G,C28005T +England/BRIS-12DF1E/2020|20-06-04 A5452G,C21846T,G28337A,G28378T +176 A8252G +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 C8637T,C9360T,G11540T,A23299G,G25311T,G29745T +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 G15193A,C25626G +177 C1734T,C23664T +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 G840A,C19032T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 G12160T +178 G1495T,T7332C,T7831A,G28845T +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 C9996T,C27498T,G28362C +179 C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 C1060T,C2358T,C4543T,C9226T,C22227T,T24326C,T25510A,T29171C,G29511T +USA/VA-DCLS-1517/2020|MW197475.1|20-07 A10912G,C12733T +180 C475T,C5986T,A28389T +USA/WI-UW-1268/2020|MW035438.1|20-08-25 C9491T,C12754T,G15100T,C15154T,C20970T,C28657T +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 C775T,C2488T +181 G20709T +Northern_Ireland/NIRE-1021DD/2020|20-03-14 A6360G +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 C4002T,G17338T,A21080C,G22104T +182 G3231T,A12850G,C21364T,A23064C,C28890T +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 T16752G,C23064A +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 C823T,A9397G,A23362T,G26654T,G29140A +183 G18213T,A18818G +Scotland/EDB6146/2020|20-05-14 T7814C,C11339T,A21137G +Scotland/EDB6052/2020|20-05-08 +184 C9286T,G28899C +England/CAMB-7FBCF/2020|20-04-16 A12556G +England/CAMB-784BC/2020|20-04-06 A13852G +185 C25731T,C29625T +England/PHEC-15A73/2020|20-03-29 C7735T,C11757T,C18501T +USA/CA-QDX-796/2020|MW064788.1|20-03-23 C16329T,C23536T,G27906T +186 C6406T,G18972A +B90|LR898037.1|? A21360C +O9|LR963074.1|? A1925C,C5796T +187 A24129G +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 G1325T,A6351C,C12741T +USA/WI-UW-738/2020|MT772509.1|20-06-30 T3049C,G4972A +188 C66T,A538G,T9107C +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 T4324G,C23029T,T26543A,A28254G +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 G23426C,A26070G +189 T4888A,G28727T +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 T5674C,C8290T +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 C466T,A17691G +190 G7295T +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 C28290T +England/CAMC-946515/2020|20-07-15 C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T +191 C2416T +192 G26233T,C27881T +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 A16766G,T28250G,G28681A +193 G8371T +194 C2937T +BHR/600023154_S29/2020|MW237743.1|20-10-14 G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 C21310A +195 C22477T +196 C882T,C17746T,G19962T,G28907T +England/ALDP-955F15/2020|20-06-08 G25793A +England/MILK-9A6856/2020|20-08-31 T2533C,T3873G,A8031G,G23126T,C26340T +197 C3811T,G22225A +England/ALDP-94EB75/2020|20-06-17 +England/ALDP-6E2806/2020|20-07-01 T16456G,C27769G +198 C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +Scotland/QEUH-969725/2020|20-08-14 C2135T,G23856T +England/QEUH-AD1648/2020|20-10-26 C1514T,T6141A,C11490T,G13397T,C27577T +199 T15366C +USA/WI-UW-249/2020|MT706376.1|20-03-16 C8016T,G28903T +USA/WI-UW-84/2020|MT706205.1|20-03-24 C18481T,G25687A,C29296T +200 C10712T +USA/VA-DCLS-0593/2020|MT951960.1|20-03 T25304C,C28890T +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 T9708C +201 C16616T,C26885T,C27603T,C28887T +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 C7267T,A25201G,C29719T,C29774T +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 A7209G,C8950T,T17262C,T22645C,T29010C +202 C14786T,G20578T +England/PHEC-1C872/2020|20-04-16 C2453T,C11102T +England/BRIS-130015/2020|20-04-11 C6361T +203 A716G +USA/UT-04888/2020|MW084559.1|20-05-26 G4960T,G21604T +USA/UT-04282/2020|MW084509.1|20-05-14 C10456T,G19816T,G25494T +204 G10631T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 G8131T +205 C19884T +Wales/PHWC-15DFD9/2020|20-05-14 G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T +Wales/PHWC-2AF12/2020|20-04-06 C26447A +206 C875T,A10904G,G25249T,C28854T +England/CAMC-B533A0/2020|20-11-08 C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C +England/MILK-9781E9/2020|20-07-29 C1150T,C6525T,C13274T,C18555T,G19962C,C24378T +207 C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +321398|LR962930.1|20-10-13 C22208T +England/QEUH-B8053B/2020|20-11-14 G22225T +208 C6401T,C13458T,C20946T +IHUCOVID-0441|LR794655.1|? T2578C,C13105T +IHUCOVID-0428|LR794641.1|? T10480C +209 T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +USA/WA-S4490/2021|MW648014.1|21-01-21 T17607C,G20396A +USA/WA-S3458/2020|MW494078.1|20-12-07 C3535T +210 T17838C,G26450T +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +211 C18877T +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 T18877C,C25904T +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 T1683C,C22224T,C28367T +212 C26735T +213 C882T,C6990T +England/CAMC-A3E658/2020|20-10-05 T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T +England/MILK-A47DDF/2020|20-10-05 T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T +214 G24197T +215 C21614T +England/MILK-5642D2/2020|20-06-10 T1834C,C11783A,C25413T +England/CAMB-1B3593/2020|20-05-26 A5829G,C6651T,C8326T,A11730G,T25732G +216 T241C,A8821G,C15752T,T26066C +England/SHEF-CDD62/2020|20-05-27 C25665T,T28098C,G29254T +England/SHEF-10B22B9/2020|20-04-20 G3482A +217 G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +England/LOND-DC4E3/2020|20-11-04 A11923G,G19009T,C20233T,T21976C,C26645T +England/MILK-99D3AC/2020|20-08-31 G6446T,C9811T,C21234A,C22713T,C29580T +218 G28851T +IND/GBRC-366a/2020|MT951170.1|20-06-18 C26058T +IND/GBRC-392b/2020|MT954593.1|20-07-06 C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T +219 G5206T,C26885T,G28875T +Switzerland/310517/2020|LR898824.1|20-10-08 G370T,A8993G,C14763T,G25690A,C29370T +England/MILK-9AB1A1/2020|20-08-31 G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T +220 C22444T +SAU/596/2020|MT755893.1|20-02-18 A23503G +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 G11417T,G28960T +221 C593T,T3118C,T10200C,A12547G,C21772T,C28854T +Scotland/QEUH-A9E7BD/2020|20-10-20 A3120C +Scotland/EDB7778/2020|20-09-16 C28045T +222 T181C,C8664T,C12525T,C15120T,G28975T +England/ALDP-B75065/2020|20-11-12 G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A +Scotland/QEUH-AD4AFE/2020|20-10-27 A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T +223 C22444T,C28854T +SAU/578/2020|MT755891.1|20-02-17 C27527T,C29421T +Scotland/EDB6640/2020|20-05-28 T838C,G1729A,C1973T,C2919T,C23191T,T23605C +224 T1947C +225 G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +England/CAMC-A65DDB/2020|20-10-11 T22918G +England/CAMC-AAF5A0/2020|20-10-22 C4672T,C8605T,C11003T +226 T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +England/MILK-A192C8/2020|20-10-01 A538G,A1098C,C2910T,G9092A +England/QEUH-9F3FDD/2020|20-09-24 +227 C7528T,C29555T +England/MILK-ABBF2B/2020|20-10-22 C10474T,C13536T +England/QEUH-96A85E/2020|20-08-14 T23986C +228 G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 C14724T +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 A6391G +229 C2836T,G21724T +230 C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +England/PHEC-149F0D/2020|20-11-19 +England/MILK-BE717A/2020|20-11-29 C11003T,C26404T,G26754A +231 G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 C9745T,C10440T +Scotland/QEUH-BEAF22/2020|20-12-04 G4105T,C4754T,C5730T,C21597T,T21841A +232 C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +England/QEUH-9B703C/2020|20-09-09 C25466A,C25614T,A29101G +England/MILK-970CE0/2020|20-08-18 G26389T +233 G25494T +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 C1593T,C2940T,C10456T,G23611A +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 T15585A,C15613T,A24062G,T27484C +234 C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +England/CAMC-1263B05/2021|21-02-10 G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A +England/QEUH-AD3822/2020|20-10-26 G2035T,A2805G,C18555T,C21365T +235 A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +England/SHEF-10C9BD2/2020|20-12-20 C15081T,A19963G +England/SHEF-10CC3AA/2020|20-12-17 C1420T +236 C11514T,C13168T,G24764T +England/MILK-9A94E6/2020|20-09-01 C7764T,C27059T,G27806T,C28087T +England/MILK-566C5A/2020|20-06-12 +237 C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +England/CAMC-C2CDFC/2020|20-12-07 T3366C +England/MILK-CAA0EE/2020|20-12-18 C28411T +238 C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +England/PHEC-1491AD/2020|20-10-17 G4006T,T18877C,T25563G +239 G13993T +England/MILK-A1BC04/2020|20-10-03 G204T,T961C,G6288T,T9651G,T13880C,C16163T,A22992G,C27263T,C28975G,A29399G +240 G5629T +241 +England/MILK-97356A/2020|20-08-14 C15720T +242 C556T,C23525T +England/CAMC-A649C9/2020|20-10-10 C6813T,C13620T +England/MILK-B04890/2020|20-10-24 G8371A,C23679T +England/MILK-A230C1/2020|20-10-03 A2175G +243 C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 C15237T +244 T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +England/MILK-EB78C6/2021|21-01-02 C6310T,C10369T +England/CAMC-C44338/2020|20-12-10 T1908C,C2947T,C17550T,C29509T +245 C16915T,T24202C,G28899T +246 G21204T,G29692T +England/QEUH-96A29C/2020|20-08-13 C15654T +England/ALDP-9EA6D4/2020|20-09-24 C8240T,C8357T +247 C26534T +England/MILK-A6AEC4/2020|20-10-09 C2910T,C16393T,A19387G,G20491A,C24378T +England/MILK-B889A0/2020|20-11-14 A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T +248 C3811T,A6608G,A28911T +England/ALDP-EEACDD/2021|21-01-03 C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T +England/LIVE-DDCD09/2021|21-01-02 A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T +249 G28086T +USA/VA-DCLS-0229/2020|MT558657.1|20-04 C10582T,C11747T,G25459T,G25555T +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 C27416T +250 T8296C,C12076T,G28690T,C28854T +Scotland/CVR3970/2020|20-08-22 G19846A,G20060T,C22227T,G22332T +England/MILK-A7D5AB/2020|20-10-13 C1929T,C3777T,G8102T,C26165T,C26681T,G28916A +251 A6512C +USA/UT-01683/2020|MT536956.1|20-04-13 G370T,A3841T +USA/UT-03892/2020|MT711875.1|20-04-13 C683T +252 G10793T +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 C29311T +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 G21724T,G25186A +253 A2161G,C16376T +USA/WA-S1281/2020|MT821642.1|20-05-12 G11417T +USA/WA-S2367/2020|MT831837.1|20-06-11 C5758T,T18453C,A28901G +254 T1918C,C6402T,C8320T,C12171T +USA/VA-DCLS-0804/2020|MT925987.1|20-07 G28079T,G29540A +USA/VA-DCLS-1454/2020|MW067779.1|20-08 G9190T,A11782G,G21893A,G26937A +255 C10507T +England/NORW-E7EBA/2020|20-05-06 A476G,A16638G,G17893T +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 C1403T,G7798T +256 C9195T,T15354C +USA/WI-UW-413/2020|MT772562.1|20-04-07 C5884T,T9195C +USA/WI-UW-288/2020|MT706396.1|20-04-08 C21855T +257 C1288T,G1298A,G25445T,G28851T,G29254T +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 C7162T,G29745A +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 +258 A1154G,G29474T +England/MILK-99DB3B/2020|20-08-31 T5785A,G15705A,G25687T,G27598T +England/ALDP-5D3DEC/2020|20-06-19 +259 A1096G,G14874T +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 C1420T +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 G15982T,G24914T +260 C2113T,C7765T,C17690T +261 T2113C,G9190T,G28851C +England/MILK-ACEE55/2020|20-10-21 C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T +Switzerland/260079/2020|LR882418.1|20-08-25 C842T,T1359C,C10702T,C11109T,C25886T,C27429T +262 T24923C +Scotland/EDB6391/2020|20-05-13 C12194T,C13968T,C14189T +Scotland/EDB5108/2020|20-03-31 +263 T5941C,A22438T +USA/VA-DCLS-0489/2020|MT951943.1|20-05 G21600T,T27672C +USA/VA-DCLS-1388/2020|MW067734.1|20-07 G1659A,A4838G,C5548T,C14220T,C14724T +264 C346T,A28959G +Scotland/QEUH-961BB8/2020|20-08-02 C9430T,G23782T,A28336G +Switzerland/250091/2020|LR881897.1|20-08-19 G11521T,T16059C,C23896T,T25078C,T27919C +265 A25524G,C26801T,G29449T +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 C10741T +266 A11246T,A23949G,C29013T +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 C9967T +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 C5392T,C18654T,C19983T,G25177T +267 T3011C,G22205T,T27869C,T28853G +USA/WI-UW-1105/2020|MT929055.1|20-07-24 C1824T,C19718T,C25919T,C29149T +USA/RML-22/2020|MW221270.1|20-08-30 T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T +268 C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +England/MILK-9750EF/2020|20-08-21 G2407C,C2902T +269 G4442T,C6525T,A16044T +270 G2407T,G11761T +England/MILK-9C3D45/2020|20-09-09 C11494T,C20468T +England/QEUH-9C7EA8/2020|20-09-11 T2924C +England/MILK-9A8AB8/2020|20-08-31 C222T +271 G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +England/CAMC-106415F/2021|21-01-15 C12116T,C12459T,A23503T,A23989T,C24023T,G28899A +England/CAMC-C470F2/2020|20-12-10 C6794T,C8814T,C13452T +272 C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +BHR/740704818/2021|MW661071.1|21-01-26 C1593T,T16138C,C25667T +England/QEUH-E93C6A/2021|21-01-04 A1807G,C9565T,G18670A,C22480T,T23176C,G27916T +273 C1545T,C22879A +Scotland/CVR2931/2020|20-04-22 T1545C,C8334T,C19089T +Scotland/GCVR-172150/2020|20-03-30 +274 A11782G,G22203T +England/BRIS-124885/2020|20-03-24 T2815C,T6892C +England/BRIS-122C4F/2020|20-04-02 G27754T +275 A20268G +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 G28881A +276 G15732T,T19143C +USA/WI-UW-1046/2020|MT928999.1|20-07-29 G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T +277 C28854T +278 G27987T +Scotland/EDB3341/2020|20-04-08 +Scotland/EDB6880/2020|20-04-30 G6461T,C17550T,C24865T +279 T24076C +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 G7393T,C27804T +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 C390T,A9984C,A15250G,G15253A,G18412T +280 C18486T,T22162C +England/ALDP-B252AA/2020|20-11-04 C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 C4898T,A11934T,G23868T +281 G16741A +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 G3259T,C7720T,G11146T,G22992T,G24781T,C25584T +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 C1060T,C8334T,T21000C +282 C4633T,T14643C,C22482T +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 G27506T +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 G23126T,G25775T +283 G1135T +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 G1148T,G28109T +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T +284 G7798T +England/LOND-D5444/2020|20-04-15 C12789T +Scotland/CVR3238/2020|20-04-26 G22992T +285 G19969A +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 A4143G,C6627T,C15960T,T19341C,A27834T,C28724T +286 C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 C16362T +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 G25775T +287 T5507A +Scotland/EDB3662/2020|20-04-28 A19855G +England/ALDP-6FB8FB/2020|20-06-29 C335T,C9024T,G15906T,C21614T +288 C4596A,G19086T +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 C23114T +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 G9111A,C13517T,C17639T,A20649T +289 C8683T +England/LIVE-A00F3/2020|20-06-04 C6336T,C12672T,C13335T,G26173T +England/QEUH-544733/2020|20-05-14 C7564T,C12400T +290 C11575T +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 G6884A,C13487T,A16840C,C19029T,T22222C,C28115T +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 A1291G,A2342G,A7291G,T7645C,C7768T +291 C1714T +England/MILK-654007/2020|20-07-04 C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C +England/OXON-B1781/2020|20-05-04 C27213T +292 C28887T +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 G1843A,C3828T,C12880T,C19386T,G25252T +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T +293 G208T +294 T2845C +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 C6500T,C17125T,C21145T,C29708T +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 G9805T,G11273A,G17944T +295 G23522A +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 C24106T,C25162A,C25163A,A26927G +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 A25747C +296 G11842A,A12759G,G18292T +Switzerland/220021/2020|LR882232.1|20-07-27 A2679G,C11767T +England/QEUH-96E08F/2020|20-08-18 G11230T,G13459T,G26450T +297 A8884G,C16694A,C26177T +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 C24258T +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +298 G25049T +England/MILK-977645/2020|20-07-24 C3695T,C18744T +England/CAMC-B325A1/2020|20-11-05 G5504A,T25570C,C27303A,C28697T +299 C29200T,C29451T +England/CAMC-B34141/2020|20-11-05 G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T +England/MILK-A795AF/2020|20-10-14 C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T +300 A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 C3397T,C18591T +England/PHEC-14F392/2020|20-12-24 G3527A,T11008C,C13059T,A26594T +301 C1191T,C9521A,G29422T,A29567G +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 C24904T,A26986T +302 G2258A,A6441G,C8140T,A9204G,C29445T +USA/WI-UW-1288/2020|MW035458.1|20-09-02 C884T +USA/WA-S2808/2020|MW077495.1|20-08-31 A19137T,C19366T,G29384T +303 C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +England/CAMC-94C02D/2020|20-07-15 C27371T +England/MILK-95DBDD/2020|20-06-20 A20667G +304 G15438T +Scotland/CVR3054/2020|20-04-24 T6673C,C28887T +England/MILK-95698F/2020|20-06-06 G3340T,T7258C,T8941C,G12911A +305 A10323G,C28854T +306 G21778A,T28854C +England/CAMB-79ECC/2020|20-04-01 +England/PHEC-224A2/2020|20-06-08 C9979T,G21853T,G29195T,C29272T +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A +307 C2143T,C29370G +USA/AK-PHL414/2020|MT946886.1|20-06-03 G26062T,C29119T +USA/AK-PHL689/2020|MW173160.1|20-06-29 C6336T,G16853T,A21794G,G21800T,G25244T +308 C28833T +England/MILK-974596/2020|20-08-17 C1625T,C19170T,A20829G,A25255G,C26469T,G27666T +309 C25731T,G28703C +Switzerland/310363/2020|LR898676.1|20-10-07 G542A,A4372C,C10277T,G14268A,G29747T +310 C2706T,C28703G +Switzerland/300264/2020|LR898541.1|20-10-01 C2470T,C4084T +England/QEUH-963433/2020|20-08-10 C5339T +311 C12915T,G21255T +England/NORW-ECD21/2020|20-05-29 C1684T,C6593T,G14829T,C23525T,G29744A +England/NORW-E755B/2020|20-05-04 A4198C,C7011T +312 T9697C +England/MILK-978626/2020|20-07-30 C147T,C12473T,C19602T,C23266T,A29517G +England/MILK-9A565D/2020|20-09-03 A2140G,C3015T,C9165T,C10448T,C11866T,T28813G +313 C4582T +USA/NM-QDX-264/2020|MT806796.1|20-04-30 G6404T,C17999T,T25123C,G28378T +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A +314 T17126C +Scotland/EDB1198/2020|20-04-08 T5161A,C25046T,G29742T +England/PHEC-20A84/2020|20-04-20 C28201T,C28546A +315 C6472T,C7815T +Scotland/EDB6324/2020|20-06-01 G22363T,T23406C,T26972C +Scotland/EDB4579/2020|20-05-06 G13397A,C21682T +316 G29734C +317 C17104T +318 T7767C,C8047T,C22879A +319 C27800A +England/MILK-ACC08E/2020|20-10-21 G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T +320 C7844T,T24925C,C27920T +Scotland/QEUH-9696CE/2020|20-08-14 C2644A,C5221T,C26985T +321 C4893T,C29762T +England/MILK-9A9F7C/2020|20-08-31 G19879A,C25433T +England/OXON-F42364/2020|20-12-18 G1306T,G4510T,T8662C,C8733T,C18032T +322 G12988T,G15598A,G18028T,T24910C,T26972C +323 G25494T +324 C25386T +England/CAMC-A57F03/2020|20-10-09 T505C,A2419G,G17058T +England/MILK-A7D15C/2020|20-10-13 C21302T,C21304A,C26256T,C27119T,C28453T +325 G28817T +Wales/PHWC-47F3A5/2020|20-10-07 T9655C,G28198T +England/ALDP-A85BCC/2020|20-10-17 T209C,T11857C +326 C20451T,G21770A +327 T7919G +England/ALDP-A2FCA3/2020|20-10-05 C24734T +Scotland/MILK-A69E6B/2020|20-10-09 A28483G,A28877G +328 G18583A +England/MILK-A7D1A7/2020|20-10-13 T4579A,T27835C +England/MILK-A91486/2020|20-10-16 G2272T,G20679T,G24586T +329 C16394T,C22127T,G23876A,G25947T +330 C29274T +331 G25218T +England/ALDP-AA169C/2020|20-10-22 C23191T,G23909A +England/MILK-A474DA/2020|20-10-06 A6659G +332 T8110C +England/ALDP-B483EA/2020|20-11-07 C10039A,T18402C,C29738T +England/QEUH-AA0035/2020|20-10-20 G11417T +333 C829T,C14697T,C18176T,G19398T,G28083T,G28975T +AUT/2021006354/2021|MW672357.1|21-02 C878T,C12374T,C20384T,C21639T,C29367T +England/MILK-E7F4C6/2021|21-01-02 T9070C,C10296T +334 G18186T,C28854T +England/CAMC-B3582D/2020|20-11-05 A9859G,C14531T +England/MILK-A796E8/2020|20-10-14 G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T +335 G1464A,A10978T,T20799C +336 G5572T,G28375T +337 G2072A,C27294T +England/MILK-9C2766/2020|20-09-10 T22189C,G27382C,A27383T,T27384C +England/ALDP-A95A9F/2020|20-10-19 T14499C,C17118T,C23854T,A27865T,T27866A +Northern_Ireland/QEUH-969C53/2020|20-08-14 C19545T,C26408T +338 G18803T +England/ALDP-9E79B0/2020|20-09-24 C5817T,T10321C,A10724G,C16469T,C21635T,G25320T +England/MILK-B561FE/2020|20-11-06 C1288T,T16213C,A23631G,C26681T,G27882T +339 C3411T,C3885T +Scotland/CVR2213/2020|20-04-11 T3411C,A3413T,A5353G +Scotland/CVR1909/2020|20-04-06 C7279T,A14001G,C26801T +340 G12550A,C20740A +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 C6628T,C18483T +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 C17977T,G28975T +341 C15324T +England/NOTT-10E1B3/2020|20-03-19 T3952C,C6268T,T15324C +USA/WI-UW-37/2020|MT706158.1|20-03-22 G11417T +342 C18904T,G25606T +Wales/PHWC-360E3/2020|20-04-26 A3260G,T7185C,G21867T,G25266T,A26513G,G29462C +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 C21646T,C22208T +343 T10561C +Netherlands/NA_289/2020|LR878031.1|20-03-31 C12085T,A23173G,C28844T +France/10065EE/2020|MT470176.1|20-03 C26895T,C29013T +344 C3634T,C28854T +IND/nimh-19510/2020|MW181843.1|20-05-16 C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T +IND/GBRC174b/2020|MT607610.1|20-06-05 C22444T +345 G28202A +France/10036BG/2020|MT470106.1|20-03 +IHUCOVID-0033|LR794417.1|? G16089A,G24794T +346 C25433T +England/PORT-2D0D4C/2020|20-04-27 A10781G,A16169G,G21600T,C29546T +Switzerland/100210/2020|LR884314.1|20-03-18 C1191A,G15260A +347 A7031G,G13617T +POL/PL_MCB_72/2020|MW273854.1|20-05-10 A2848G,C9286T,C23202T +POL/PL_MCB_97/2020|MW273879.1|20-05-10 C2570T +348 G19542T,G20679A,T27576G +Scotland/CVR3629/2020|20-05-24 G18380T +Scotland/QEUH-5456F9/2020|20-05-13 C6606T +349 C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +England/QEUH-9CE80D/2020|20-09-17 A21018G,C21302T,C21304A,G21305A,C27167T,C28708T +England/QEUH-990752/2020|20-08-29 +350 C15277T +AUS/VIC38/2020|MT450953.1|20-03-11 C10350T +IHUCOVID-0133|LR794459.1|? C8394T +351 A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +England/PHEC-1555C0/2021|21-01-16 C673T,A11430G,C21846T,C22995A,C25504G,G25894A +England/MILK-E6578E/2020|20-12-30 C5184T,A9204G,A10248G,C19975A +352 G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +England/CAMC-106052A/2021|21-01-16 C14184T,A15402G,C23170T,C24138A,C24381T,T25303C +England/LOND-12F6633/2020|20-12-15 G9425T,C21997T,G24116A,C29200T +353 G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +Switzerland/240009/2020|LR880588.1|20-08-07 +Switzerland/240084/2020|LR880634.1|20-08-12 C815T,C8752T,C25904T,G27147T +354 A26530G +355 G11596T +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 G20568A +356 C8293T,T18488C,T24739C +Switzerland/101166/2020|LR824397.1|20-03-31 C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 C17118T +357 C15277T,A21917G +PER/covper020/2020|MW030251.1|20-07-03 T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T +PER/covper091/2020|MW030227.1|20-03-17 +358 A2775G,G4255T,C13568T,A20355G +England/CAMB-737D6/2020|20-03-31 C6861T +England/CAMB-1B08D9/2020|20-05-04 C14235T,G25699T +359 G3831A +Scotland/CVR2927/2020|20-04-22 A1801G,C9857T,C18568T +Scotland/GCVR-173C30/2020|20-04-07 T7441C +360 T445C,C6286T,G21255C,C22227T,C28932T,G29645T +361 C26801G +362 C3426T,C19862T +363 C11050A +England/MILK-BB0022/2020|20-11-18 +England/MILK-BB0031/2020|20-11-18 +England/PHEC-152C73/2020|20-11-16 C21682T +364 T12226C +Scotland/QEUH-96B4E0/2020|20-08-17 C3093T,C11102T,C18555T +England/MILK-9AA782/2020|20-08-31 C16362T,C19164T,G21786T,C24904T +365 T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +Scotland/QEUH-9D11C0/2020|20-09-16 C24334T +England/QEUH-A0077A/2020|20-10-02 C6027T,T10977C,A25327G +366 C27944T +England/ALDP-AA0ED1/2020|20-10-22 C445T,G28079T +England/QEUH-A4CF6B/2020|20-10-05 C4534T,C5544T +367 G204T +368 T16242A +England/ALDP-9BE8B5/2020|20-09-09 G28745A +Scotland/EDB10724/2020|20-12-04 C2509T,C10615T,T12134C,C21365T,C22987T +369 C21614T +Scotland/CVR4309/2020|20-09-14 C7471T +370 C6317T +England/CAMC-9DFBC4/2020|20-09-21 G9658T,T21841C +England/QEUH-AD1165/2020|20-10-25 C4795T,T5471C,A21631T +371 G17944T,C24334T,T24814C,C27769T +England/ALDP-FB5E3E/2021|21-01-11 G1141A,T11522G,A13315G,C18744T,T21973C +England/ALDP-E8756E/2021|21-01-04 C12781T,G17632A,C28453T +372 T24769C,C25460T +England/ALDP-A2EAE6/2020|20-10-05 C337T,T21294A,G21295A,G21296A,A25008G +Scotland/QEUH-A636C3/2020|20-10-10 C593T,T26903C,C26936T +373 C15480T +England/QEUH-A76C07/2020|20-10-12 G21777A +England/MILK-AC7997/2020|20-10-21 C125T +374 G8179T +Scotland/QEUH-9DC927/2020|20-09-22 C4794T,T8179G,G23006A +Scotland/QEUH-9B75D3/2020|20-09-04 G29778T +375 C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +England/QEUH-9B3A8D/2020|20-09-04 T11152C,T11824C +England/NORW-F1F9C/2020|20-10-24 C203T,C5183T,A8031G,C9207T,C25521T,G26690T +376 A1987G +377 T14721C,T25519G +England/QEUH-AE4EA4/2020|20-10-27 C26894T,T28277C,A28612G +England/ALDP-9BECB9/2020|20-09-10 C23029T +378 G6344T +Wales/PHWC-16E6A3/2020|20-10-02 C3768T,C5031T,C18555T,T20976C +England/MILK-9A9D09/2020|20-09-01 A1230G +379 C66T,G10870T,A11781G,C25614T +England/QEUH-B6C0E9/2020|20-11-11 C5730T,C14318T,C23644T,C29739T +England/CAMC-AEA62E/2020|20-10-25 C18329T +380 A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +England/PHEC-14E15D/2020|20-12-09 C20178T +England/PHEC-149635/2020|20-10-28 +381 C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +Switzerland/270068/2020|LR882987.1|20-09-02 G17058T +Switzerland/332169/2020|LR898966.1|20-10-22 G21830T,C27881T +382 A408G +383 C22088T,C29686T +England/ALDP-A95DE1/2020|20-10-20 G21193T,G24794T,G25135T,G26801C,T26843C +England/ALDP-9E75E9/2020|20-09-25 G2764T +384 G27877T +England/MILK-AC7B0A/2020|20-10-21 C7528T,G24098T,C28315T,G28939T +England/NOTT-11336A/2020|20-09-16 G713A,A21127G,T26163C +385 C28310A +England/MILK-ABB8D5/2020|20-10-21 C9857A,A28304T +England/NORT-2884A8/2020|20-11-22 C6525T,C10376T,G17032A,C23557T,C24106T +386 G23311C +387 T29185A +England/MILK-A799FE/2020|20-10-15 A2658G,C17004T,C17125T +England/CAMC-A417F5/2020|20-10-06 T23062C,G27459T,G29755T +388 C10626T +England/QEUH-AE2A48/2020|20-10-26 C6114A,T17208C +England/ALDP-A68CF9/2020|20-10-12 G6476T +389 G25440T,C27752T +England/CAMB-1B6439/2020|20-09-22 A10323G,C28310A +England/MILK-9F1898/2020|20-09-25 C5239T +390 G22346T +391 G28321A +England/MILK-A7CDC2/2020|20-10-13 G10996T,G24867T +England/CAMC-A5845E/2020|20-10-08 C13009T,G17721T,G18462T,C21234T,G23675C +392 G21800T,A22053C +England/ALDP-AA10DA/2020|20-10-22 T7549C,C9073T,G10870T +Wales/PHWC-4815AA/2020|20-10-13 C12049T +393 C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +England/QEUH-AD0DDB/2020|20-10-26 G14187A,A25948T,C29274T +Wales/MILK-9E3240/2020|20-09-21 A9409G,T29604C +England/ALDP-A6CC8C/2020|20-10-14 C6627T,C25791T,C26270T +394 A24862G +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 T7132C,C8327T,C9112T,C24442T,G25429T +Switzerland/140091/2020|LR824563.1|20-04-18 T658C,A2655C,C28629T +395 C7834T,C16997T,G25429T +England/ALDP-49A5AE/2020|20-06-13 C2983T,G10565A,C17336T +England/ALDP-4A2A77/2020|20-05-22 +396 C1909T +England/BRIS-12755E/2020|20-04-22 C9438T,G16647T,C22264T +England/BRIS-12468B/2020|20-04-09 T27576C +397 C2940T +England/NORW-E9DF7/2020|20-05-02 C7765T +Scotland/EDB156/2020|20-03-23 C4276T,C26822T,G29227A +398 C6990T +Wales/PHWC-27B20/2020|20-03-30 T22435C +Wales/PHWC-2624A/2020|20-03-27 C27476T +399 C29200T +Wales/PHWC-16930B/2020|20-04-01 C3264T +Wales/PHWC-34285/2020|20-04-14 A6616G,C12915T +400 C26256T,C29668T +USA/UT-08320/2020|MW206019.1|20-05-15 A11782G,G27987T,C28292A,G29755T +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 C5184T,C5416T,G8017T +401 T26512C +Wales/PHWC-2BF8A/2020|20-04-02 C19011T,C22323T,C26415T +Wales/PHWC-29E43/2020|20-04-04 G9220A +402 C25350T +England/LOND-D3534/2020|20-03-27 T27280C +England/PHEC-20C24/2020|20-04-21 C3096T,G3939A,G8179T +403 T17835C +England/CAMB-7D2EA/2020|20-04-06 G26273T,C26408T,C29370T +England/LIVE-A63E5/2020|20-03-18 G680T +404 A25575C +Wales/PHWC-260C8/2020|20-03-26 C12242T,C22264T +England/BRIS-12F969/2020|20-03-30 C96T,C4113T,G14857T +405 C14741T +England/PHEC-2083F/2020|20-04-13 A187G,A5650G,C25350T +Wales/PHWC-16C6F0/2020|20-06-09 T8944C,G25552T +406 A1610G,C9344T,C13335T,C28887T +England/QEUH-B2DD0B/2020|20-11-03 G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G +England/MILK-A7B0BB/2020|20-10-14 C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T +407 C5506T,G14241T +Wales/PHWC-27461/2020|20-03-31 C19374T +Wales/PHWC-29F13/2020|20-04-01 C19151T,G23612A +408 T7438C,C29353T +AUS/VIC989/2020|MT451674.1|20-03-31 A26864G,C27630T +AUS/VIC1056/2020|MT451723.1|20-04-03 A21944T +409 A187G +410 C16017T,T27212C,G27561T +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 C16393T,G18546T,C24718A,C27600T,C29421T +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 A10770G +411 C19066A +England/BRIS-12B2BD/2020|20-05-02 A1699G,C6361T,C25797T,C27577T,C27641T +England/BRIS-128DCE/2020|20-04-14 C12213T +412 G14580T +England/LIVE-A65EF/2020|20-03-19 G10523C +Wales/PHWC-2B7CE/2020|20-04-12 C9857T,G28903C +413 A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +IND/GBRC238b/2020|MT676367.1|20-06-12 T18877C,C22444T,C28887T,T29750C +IND/GBRC209a/2020|MT664202.1|20-06-11 G25563T +414 C1884T,T26497C +Scotland/GCVR-1725BE/2020|20-04-04 C6730T,G28001T +Scotland/CVR30/2020|20-03-13 +415 G4866T,C14425A +IND/GBRC99/2020|MT509504.1|20-05-06 A21511G +IND/GBRC31/2020|MT467247.1|20-04-29 C3737T,C12710T,T21890C +416 C6723T,T26094C +AUS/VIC1239/2020|MT451821.1|20-04-02 G28476T +AUS/VIC1282/2020|MW153048.1|20-04-08 G6650T,T7034C,T18974G +417 C4084T +IND/GBRC128/2020|MT539172.1|20-05-02 G5572T +IND/GBRC123/2020|MT539176.1|20-05-02 G5194T,C22326T +418 A544G,C17104T +POL/PL_MCB_32/2020|MW273814.1|20-04-22 C1594T,A3090T,C23635T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +419 G20275A +England/CAMB-7BED9/2020|20-04-04 A6672G,C10641T +Netherlands/NA_302/2020|LR878041.1|20-04-01 A3058G +420 C13862T,C28836T +England/NORT-289814/2020|20-04-01 C9165T,T21033C +England/ALDP-9ED57A/2020|20-05-08 A23796G,G23824T,C29095T +421 G2282A,T9742C,C17639T +USA/WI-UW-1385/2020|MW035549.1|20-09-06 C18508T,G19174T,G24883T,C26370T,C28868T +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 G20160T +422 C28603T,G28899T +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 C10279T,C12132T,T16077C,T20401C +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 A2104G,T21656C,G25244C +423 C23422T,T23849C,C29686T +Scotland/CVR129/2020|20-03-13 G29227A +Scotland/CVR52/2020|20-03-14 C25667T +424 G3338T,C3511T,A22301G,G29508A +England/ALDP-94D8D9/2020|20-06-20 C19698T,C27393T +England/ALDP-9442D4/2020|20-06-07 T3616A,T23686C,T27634C +425 G29422T +Northern_Ireland/NIRE-1022CB/2020|20-03-25 C1997T,C28708T +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 C2509T,G12311T,C12357T,C20148T,C27925A +426 G28882A,G28883C +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 T241C +427 G28881A +428 C28887T +GRC/202_32984/2020|MT459870.1|20-03-12 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/CAMC-947875/2020|20-07-13 G25699T,G28884T,C28896T,C29738T +429 T19839C +England/PORT-2D3B4F/2020|20-04-18 C17410T,C18788T,G21830C,C27688T,G29742T +England/EXET-136EE8/2020|20-04-20 C4784T,C15720T,C23664T +430 G3242A,G8120C,C21646T,A24205T,G28083T +Northern_Ireland/NIRE-FB967/2020|20-08-17 C4927T,C15738T,C27527T +England/QEUH-7A4BBB/2020|20-07-14 C2511T +431 G242T,C18086T +USA/WA-S2264/2020|MT831437.1|20-06-09 T242G,C5020T +USA/WA-S1922/2020|MT831459.1|20-06-03 C12528A +432 G25552T +433 G11801A +Wales/PHWC-360A7/2020|20-04-29 T4330C,T24063C +Wales/PHWC-260AA/2020|20-03-24 T7168C +434 A26332G,A28877T,G28878C +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 G27670T +435 G10262A,C22995T,A27669G +England/CAMB-83FF9/2020|20-04-25 C8290T,C12242T +England/CAMB-75895/2020|20-03-18 C4965T,C8956T +436 C28256T,C29784T +USA/WA-S2012/2020|MT831128.1|20-06-04 T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T +USA/WA-S1775/2020|MT834200.1|20-06-01 G13513A +437 C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +England/ALDP-B82A0D/2020|20-11-14 C4456T +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 G8015A,C9803T,C25797T +438 T25713C +England/MILK-11A5634/2021|21-01-29 C683T,C11747T,G22022A,T24991A,T25039C +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 C5796T,C9360T +439 A11839G +England/LOND-D6EBE/2020|20-04-03 C8293T,C16575T +England/SHEF-C88A2/2020|20-04-21 T3037C,C5878T,C7735T,C10645T +440 A23756G +USA/WA-S860/2020|MT642111.1|20-04-24 C4886T,C16178T +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C +441 C28905T +England/QEUH-A0AFB4/2020|20-10-01 G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C +England/ALDP-C48747/2020|20-12-12 G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C +442 C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T +443 G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 C22264T +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 T27824C +444 C6573T +445 T2537G,G12191T,T16479C +Switzerland/230051/2020|LR882355.1|20-08-04 T7396C,C14120T,G25471T +Wales/MILK-9C729D/2020|20-09-12 A6659G,C6883T,C13261T,C15774T +446 C25528T +England/BRIS-12A70A/2020|20-05-01 C21077T +England/CAMB-77F61/2020|20-04-01 G22299A +447 C18115T +England/PHEC-215FB/2020|20-04-29 A5855G,C18110T,A27277G +England/PHEC-1B7C1/2020|20-04-08 +448 C27046T +Switzerland/120182/2020|LR860799.1|20-04-27 G13897T,C24621T,T26038C,G26550A,T27046C +England/ALDP-9545BA/2020|20-06-17 T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C +449 T27264G +England/ALDP-651C9D/2020|20-07-04 C3698T,A28765T +Scotland/CVR3919/2020|20-06-21 A22330G +450 C1800A,C23854T,G25972A,G27842T +England/ALDP-9558ED/2020|20-06-12 G2398A +England/NORT-286255/2020|20-09-16 C5000T,C13883T,C18395T +451 T11638C +England/BRIS-12F78D/2020|20-03-10 C25584A +Switzerland/100802/2020|LR824314.1|20-03-25 C8389T,C29708T +452 C17678T +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 T3745C +453 C21597T,C29144T +PHL/UPMNIH_C1/2020|MW243995.1|20-07 C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T +PHL/COVID-6009/2020|MT919790.1|20-07-18 C3736T,T10771C,C13051T,C26305T +454 C1912T +England/PHEC-20E4C/2020|20-04-16 C7200T,C8290T +England/NORT-283B7B/2020|20-04-02 T28118C,G29227A +455 C9430T +England/ALDP-95665B/2020|20-06-08 G571A,G9575A,C10074T +England/CAMB-7767B/2020|20-03-31 C23802T,C28045T +456 T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +457 T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T +458 G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +England/MILK-A79D10/2020|20-10-15 C4113T,T17214C,C19324A,G28044T +England/PHEC-148F95/2020|20-10-15 C2644T,C9319T,G13348T,C19113A +459 T4711C,A6709G +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 C2842T,C18570T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 C17125T +460 G5539A,G21468A +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 T1937C,A15820G,T22441G +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 C6578T,C16049T,G19872C,C26768T +461 C936T,G3259T +USA/VA-DCLS-1485/2020|MW205988.1|20-07 C8326T,G21641T,C26681T +USA/VA-DCLS-1212/2020|MW067767.1|20-06 A20860G,C28087T +462 C673T +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 C379T,T4125C,C14220T,T25479A +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +463 G9130T,T27319C,G28487A,C28868T +Switzerland/250060/2020|LR881882.1|20-08-18 G1186A,C3738T,C16111T,G29706T +England/QEUH-A77F0D/2020|20-10-12 C6091T,G9389A,G12845A,C18713T,G24095T,G25249T +464 G443A,G28378T +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 C21614T,C21855T,T23042C +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 T6579C +465 G24781T,G29706T +466 A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +England/QEUH-9AE4E1/2020|20-09-01 C18267T,G29736T +England/MILK-A180DE/2020|20-10-01 A4764G,C21952T,G26257A +England/OXON-AEBC7/2020|20-04-12 C9430T +467 C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +England/QEUH-96E27A/2020|20-08-20 C936T,G25785T,G28857T +England/MILK-74C001/2020|20-06-29 C21789T,G29779T +468 C9438T,G29777T +England/LOND-D4C6B/2020|20-04-15 A8681G,C10369T +Wales/PHWC-164485/2020|20-05-02 A16653G +469 G922T,C6541T,C19983T +England/ALDP-5C701F/2020|20-06-19 T1863C,T19983C +England/ALDP-51F142/2020|20-06-02 +470 C3170T,C6336T,C27673T +England/ALDP-955FAC/2020|20-06-08 A2130T,C11572T,C19961T,G20006T,C25207T +England/ALDP-49E391/2020|20-05-20 T26260G +471 C6781T,C11916T,C19185T +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 A16920G,G25906T +472 C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +England/LOND-126DFA5/2020|20-12-27 C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T +Wales/PHWC-4846A4/2020|20-10-24 C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T +473 C10376T,C26208T +Northern_Ireland/NIRE-10677D/2020|20-05-14 G18148A +Northern_Ireland/NIRE-106740/2020|20-05-14 C11259T,C26681T +474 C26447T +England/SHEF-C9FBB/2020|20-04-11 C1190T,A25410C,C25831T,T26447C +England/LOND-D6531/2020|20-04-22 C2710T,T2872C,C3041A +475 A27932G,G29705T +England/MILK-9705F4/2020|20-08-18 C15045T +England/ALDP-9B6440/2020|20-08-28 +476 G25088T +477 A6319G,T26149C +England/MILK-99D597/2020|20-08-30 C6629T,C15720T,G27877T,G27996T,A29424T,G29688A +478 T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T +Scotland/EDB6515/2020|20-06-15 +479 C12053T +480 C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +England/NORW-222D0F/2020|20-12-20 C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T +England/MILK-F72F49/2021|21-01-05 C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T +481 T22020C,G23628T,C25728T,G26063T +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 G2155T,C6541T,C10029T,C20844T,A24775C,G28914T +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 C6541T,C6606T,G11926A,G27933T,G27990A +482 C24904T,T25088G +England/NORW-EE34B/2020|20-03-24 G18315A +England/NORW-E8693/2020|20-04-16 C1348T,C3653T +483 T772C,A2869G,C10868T,G15652T,C29095T +England/QEUH-AD487C/2020|20-10-26 C186T,C12025T,C28819T +England/QEUH-9B7B2C/2020|20-09-03 T14313C,G23438T +484 A11782G,T21570G,T25473C +Switzerland/250070/2020|LR881870.1|20-08-18 C512T,T28297C +England/QEUH-9B5344/2020|20-09-02 C27641T,G28913T +485 A2576T,C5175T,C6401T +England/ALDP-6839B9/2020|20-07-02 A27691T +England/ALDP-6BAB59/2020|20-06-29 C11620T,C22993T +486 C1427T +FRA/Env-Di/2020|MT709105.1|20-05-14 G3419A,G3871T,C13517T +AUS/VIC1786/2020|MT612326.1|20-05-27 C6195T,C10969T,T17568C,G20679T,T28098C,C29722T +487 C12809T +England/CAMB-7620F/2020|20-03-30 C4876T,T12809C +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 C4795T,C29171T +488 C1471T +Scotland/QEUH-96C6AD/2020|20-08-07 C19524T,C20759T,G25088T,C26912T,C28292A,C29739T +Switzerland/270108/2020|LR882077.1|20-09-03 G2782T,C15251A,C21034T,C21590T,G23302A +489 G25912T +England/PHEC-1DF03/2020|20-04-08 C18568T,G24348T +England/CAMB-1AB21F/2020|20-04-18 C6385T,C12880T +490 T22843C +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 T28010A,T28127C +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 C18652T +491 G3323T,C10369T,G18674A +England/QEUH-9DE381/2020|20-09-21 C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G +England/QEUH-95E7D8/2020|20-08-06 C14177T,C25553T,C28121T +492 A2526C,C10440T,T25316C +England/NOTT-111E3E/2020|20-06-10 G199T,C9474T,C17163T,G25186T,G29688T +England/NOTT-111117/2020|20-05-03 +493 T13827C,G18756T +England/ALDP-68EFBC/2020|20-07-02 C23430T +England/ALDP-91F278/2020|20-06-23 A5695G,C10116T,C23855T +494 C4113T,G21974C,C23191T +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 C1347T,C6190T,C11758T,C12741T +USA/WI-UW-1202/2020|MW035373.1|20-08-06 C23910T,G27327T,G28690T +495 G3230A,T24076A +England/PHEC-16F19/2020|20-03-31 C4570A +England/GSTT-265D4DF/2020|20-03-19 +496 C4391A,C15848T,T19893C +England/LIVE-A2765/2020|20-05-20 C16084T,C19185T,C26625T +England/ALDP-658C87/2020|20-07-03 C1263T,G19254T,C25889T +497 C1420T +Northern_Ireland/NIRE-1038B9/2020|20-04-16 G25947C,C28312T +Northern_Ireland/NIRE-FCE85/2020|20-04-28 C12747T,G18028T +498 C19366T +Northern_Ireland/NIRE-FBB52/2020|20-04-13 C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 C6114T +499 G10097A,C23731T +England/NORT-283BE4/2020|20-04-03 C24026T +500 C4002T,C13536T +England/CAMB-81070/2020|20-04-20 C4698T +501 T28110C +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +502 G2447T,G22199T +England/ALDP-94DD07/2020|20-06-19 G3164T,C7528T,G20569T,C29625T +England/ALDP-49EC3C/2020|20-05-20 G29392T,C29541T +503 G29179T +PER/covper024/2020|MW030255.1|20-07-04 C17436T,G27478T +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 A10323G,G27160T +504 A21131G +PER/covper011/2020|MW030242.1|20-07-04 C3768T,C14265T,G17721T,C27213T,C27513T +PER/covper040/2020|MW030271.1|20-05-05 C12854T,G20752T +505 C18747T +England/MILK-B1553B/2020|20-10-23 C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A +England/MILK-66F889/2020|20-07-03 G14547A,G14869A,A24879G,C29421T +506 G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 A235C,T1921C,C22522T,C29259T +England/LOND-12F65DC/2021|21-01-19 G8591T,G15906T,A18594G,G23868T,G25906T,C26060T,G28079A,T28124C,T28723C,G29260T,G29543T +507 G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +Switzerland/310500/2020|LR898805.1|20-10-08 C9286T,G18210T,C21306T,G28541T +Switzerland/300433/2020|LR898634.1|20-09-29 G27382T +508 T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +England/QEUH-96BAA2/2020|20-08-14 G1042T,C8895T,G25250T +Wales/ALDP-B19FFD/2020|20-11-01 G922T,T10369C,A23064C,G23608T,C28453T,C29642T +509 G24794T +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +PER/covper018/2020|MW030249.1|20-07-03 G3755T,G11552T,A28356G +510 C15656T,C25936T +DK/AD3_Farm1/2020|MT919525.1|20-06-14 A5421G,A22920T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +511 A1630C,C27679T +England/BRIS-123EDF/2020|20-04-08 C2509T +England/BRIS-123F09/2020|20-04-08 C9118T +512 C3373A,C15960T +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T +513 T15960C +514 C2706T,G9968T,G16647T,T23480G +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +Scotland/CVR41/2020|20-03-13 C823T +515 G1820A,C6883T,G21724A,G28003C +516 C12249T +England/CAMC-AEACFF/2020|20-10-25 C3141T,C4683T,C8683T,C17690T,T19935C,C24130T,A27979G +517 G3431T,T25577C,C25626T,C27002T +England/PHEC-149FA3/2020|20-11-20 G3433A,G8084A,C11941T,C18555T,A26174C +England/QEUH-C9332B/2020|20-12-17 G9314A,C13605T,G14490A +England/MILK-9A699F/2020|20-09-01 C1457T,G3286A,C8290T,C8626T,C9298T,C24378T,G26648A,C28657T +518 C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +England/CAMC-C3E586/2020|20-12-10 C3736T,C6336T,G19735T,G23611T,C26735T,C26858T +England/CAMC-DE5550/2020|20-12-29 G6320T,C10582T,C12194T,C25603T +519 C1437T,G29745T +England/ALDP-9ECEAD/2020|20-05-05 C3874T,A6659G,T8008C,C27944T +England/BRIS-12DC53/2020|20-05-02 G4720A,A4928T +520 C2062T,C5184A,C13887T,C18687T,C23248T +Scotland/QEUH-7B078B/2020|20-07-19 G14055T,C19269T +England/MILK-993EA5/2020|20-08-22 C10252T,C16733T,G25595T +521 C313T +England/BRIS-124C89/2020|20-03-26 T313C,C29119T,C29585T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 C3096T +522 G4510A +523 G15438T,G25785T +England/ALDP-A525BB/2020|20-10-07 C1758T,G18337T,G24757T,G28903T,G29260T +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 C541T,C1528T,C2836T,C8905T,A23125T,G28851T +524 G19480A +England/MILK-A45AF8/2020|20-10-06 G18985T,C21844T,T23084C,C25318T,G27358T +Scotland/QEUH-A613BF/2020|20-10-13 C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T +525 C9286T +526 C19763T +Switzerland/180039/2020|LR861669.1|20-07-01 C1912T,C10252T,C14178T +Switzerland/220022/2020|LR882244.1|20-07-27 C2062T,G6877T,T8082C,C13945T,C22687T +527 T4346C,C10376T,C14708T,C28725T,G29692T +Japan/TKYE627000_2020/2020|LC593811.1|20-08 C7728T +Japan/TKYE624705_2020/2020|LC593810.1|20-07 A158G,C706T,C5974T,A26459G +528 G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +England/QEUH-962E81/2020|20-08-10 G24755T,A27973G +England/QEUH-96E605/2020|20-08-17 C2841T +529 G28396A +England/QEUH-9F9265/2020|20-09-26 C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T +England/QEUH-98EE43/2020|20-08-25 C2453T,G22918T,G27708T +530 G1820A,C6541T +England/NORW-E8709/2020|20-04-18 A9737G,A29242G +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 A3740G,C12786T,C26333T +531 A11348G +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 G28690T +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 G2534T,G9130A,G29422A +532 C5700A +England/QEUH-9600C9/2020|20-08-05 C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T +England/QEUH-9B92F8/2020|20-09-07 C245T,G3250T,C11020T,C11109T,G16377T,C27874T +533 T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +IND/GBRC455b/2020|MW600453.1|20-12-24 G160T,T313C +IND/GBRC455a/2020|MW600436.1|20-12-24 G160T +534 C823T +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 A8565C,A28847T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 A11023G +535 C27128T +England/CAMB-76490/2020|20-03-30 G8171A,A16541G,A17730G +England/CAMB-7CBD1/2020|20-04-05 G960T,G26589C +536 C8917T,C18167T,G21518T,G28975T +Japan/TKYE630414_2020/2020|LC593818.1|20-08 G27604A,C29679T +Japan/TKYE622411_2020/2020|LC593808.1|20-07 G29773T +537 G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +England/MILK-A18C8F/2020|20-10-03 +England/ALDP-C3C1FD/2020|20-12-10 C19264T,T22672C,A23869G,T28340C +538 G22627A,G28628T +Wales/PHWC-15E0B7/2020|20-05-13 C1063T,G16117T,C27849T +Wales/PHWC-30957/2020|20-04-08 T11654C +539 G25563C,G28178T +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 G20134T,C24621A,G28300T +LC573289.2|20-06 G2305T +540 C2509T,C14724T,G24262T,G27703T +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 G5015A +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 G4148T,G5015A,C13620T,G28166A +541 T27645A,G27666A +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 C5979T,G29648T +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 T14127C,T14745G,G19180T,G22154T +542 T29148C +543 G25793T,T27299C +544 T25793G +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 C28969T +USA/WI-UW-114/2020|MT706234.1|20-03-30 A14330G,A27989G +545 C25916T,C29769T +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 T28360C +546 A2475G +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 C14805T +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 C11750T,C18183T,C25731T +547 G26416T +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 C2044T,C10626T,C11824T,A22052C,C26645T,C29555T +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 C1663T,G3155T,A4485G,C5493T,G14020T,C27431T +England/CAMB-74D5B/2020|20-03-19 +England/LOND-D53CF/2020|20-04-15 G621A +548 G18907T +549 G18898T +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 G1323T,T18907G,C21772T +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 C823T,C1457T,G3304T,A20055G,C22208T,C29095T +550 C22314T,T24796C +Wales/PHWC-1645BF/2020|20-05-06 C5192T,C12400T,C25710T,C28432T +Wales/PHWC-33C88/2020|20-04-17 G6358A,A14328G,G29736A +551 G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +552 G26615T +Scotland/EDB5196/2020|20-05-18 C13384T,A18902C,C27644A,A29767C +Scotland/CVR3185/2020|20-04-28 C16946T +553 C17249T,G17722T +England/BRIS-127363/2020|20-04-24 G174T,G5572T,G12202T,T16521C +England/BRIS-127A40/2020|20-04-17 G2659T +554 A10260G,A10880G +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 G16197T,C24382T +England/MILK-99DE32/2020|20-08-31 C2880T,A4044C,C6896T,A8413G,G19086T +555 G2164A +England/CAMB-83A9E/2020|20-04-15 G7761A,C14931T +England/EXET-136ED9/2020|20-04-22 C8733T +556 G3896T +England/ALDP-955D39/2020|20-06-12 G5629T,G19889T,C27673T +Switzerland/300258/2020|LR898536.1|20-10-01 C6701T,C12116T,C14352T,G17334T +557 C18713T +England/SHEF-D1D3E/2020|20-04-22 C21618T,C25047T,C29095T,G29747T +England/SHEF-CBE43/2020|20-04-26 C11396T,C17676T +558 G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +England/CAMC-949688/2020|20-07-27 T3694C,G20580T +England/SHEF-C3AED/2020|20-07-30 C401T,T1438C +559 A8072G +England/ALDP-90D6AE/2020|20-06-24 A3776G,C21855T,G25166C,C25831T,C26111T,C26195T +POL/PL_P12/2020|MT511068.1|20-03-31 C106T,C8025T +560 T3873C,G3880A +England/MILK-ABBCCA/2020|20-10-21 A14144G,T20196C,C23536A +England/MILK-ACCF27/2020|20-10-21 C18131T,G26640T +561 C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +England/QEUH-99923A/2020|20-08-24 G974A,C7267T +England/MILK-825C54/2020|20-07-16 G680A,C14120T +562 A20742C +England/MILK-9E2BDD/2020|20-09-20 A9337G,A27086T +Northern_Ireland/NIRE-1088C3/2020|20-09-13 C16260T,G25340T,C27684T +563 T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +England/MILK-99D755/2020|20-08-31 T4303C,C25553T,G25599T +England/MILK-99D764/2020|20-08-31 G20125A,G22484T +564 G569A,C5482T,G17944T,C18747T,A22182G +England/ALDP-907D09/2020|20-06-22 C20320T +England/MILK-85E3E4/2020|20-07-18 G2144T +565 A2641G,C3622T,C25844T,C28087T +England/MILK-95862C/2020|20-06-11 G28557T +England/ALDP-94EF88/2020|20-06-16 C2106T,C12073T,C14676T,T20989C +566 G21624T +England/PHEC-219E0/2020|20-05-01 T23227C +England/LEED-2AA59E/2020|20-04-06 C28969T +567 T5465C,G24102A +Wales/PHWC-16578B/2020|20-06-07 A489G,G6387A,C19185T,A25800T,A25801T +Wales/PHWC-166104/2020|20-05-15 T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T +568 G18859T +England/BRIS-125D67/2020|20-03-29 C6347T +England/BRIS-12C841/2020|20-05-12 A14691G,T19473C,T22325C +569 G1874T,C8683T,C28093T +England/ALDP-94D8F7/2020|20-06-20 A9997C +England/NOTT-111BFB/2020|20-05-29 G26426A +570 A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +England/ALDP-95A754/2020|20-06-13 T20764C +England/ALDP-95CEA8/2020|20-06-15 C14931T +571 T29464C +572 G26918T +England/MILK-8664D7/2020|20-07-17 C29733T +England/MILK-993300/2020|20-08-26 C8290T,C19367T,C23525T +573 C7843T,G15438T,C25207T,C28453T +England/CAMC-947392/2020|20-07-18 T25949C +England/MILK-977469/2020|20-07-24 C2536T,T7843C,C8318A,T26160C +England/MILK-629D13/2020|20-07-05 G1820A,C11003T,T13417C,G22409T,C25896T,G25963A +574 G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +England/PORT-2F5752/2020|20-10-13 C18329T,G20062T,C23185T +England/QEUH-96A4C3/2020|20-08-13 G3403T,C5691T +575 A10948G +576 T9172C,G26730T +USA/VA-DCLS-1073/2020|MT981458.1|20-06 T27846C,C29171T +USA/VA-DCLS-0120/2020|MT482111.1|20-04 C10818T,C21998T +577 C6312A +Wales/PHWC-162751/2020|20-05-27 G18538T,A20136G +England/ALDP-497D12/2020|20-06-03 T3334A,A6375G,G24926T,C25665T +578 G20931A +England/SHEF-C13B7/2020|20-05-19 G10870T,C15315T +England/SHEF-10B2E79/2020|20-05-16 A9272C,G26416T +579 C6582T +England/OXON-AEF9E/2020|20-04-07 C140T,T6582A +Wales/PHWC-162E7A/2020|20-05-19 C5497T +580 C12488T,C25528T,G27084A +USA/WI-UW-982/2020|MT846668.1|20-07-21 G17964T,G22801T +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 A22108G,C28344T +581 A25505C +USA/FL-QDX-228/2020|MT806770.1|20-04-18 G675T,C4456T,A21625G +USA/VA-DCLS-0920/2020|MT929088.1|20-05 C8664A,G8851A,C19983T,G29755T +582 C21637T,A28169G +England/ALDP-71D072/2020|20-07-01 T26156C +England/MILK-9573DB/2020|20-06-10 T9292C,C21910T +583 G25617T +England/ALDP-954C6A/2020|20-06-13 G27857T +England/ALDP-A524EB/2020|20-10-07 C3099T,C17678T,G19816A,C25728T +584 G1590T,A11120G +England/ALDP-9D9104/2020|20-09-18 C2462A,C10615T,G27047T +England/CAMC-A40F67/2020|20-10-06 A12529G +585 G11230T,G11401T,T24088C +Scotland/QEUH-A00DF0/2020|20-10-02 A11546G,C29730G +England/ALDP-9CC5BD/2020|20-09-15 C11224T,G28307C +586 C835T +England/QEUH-9B6EAC/2020|20-09-09 A29700G +England/NORT-2A4CAE/2020|20-09-17 C27945T +587 A6900G +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 A3801G,C26985T +Northern_Ireland/NIRE-FB369/2020|20-08-31 G25456T +588 C2638T +Wales/ALDP-6C3E72/2020|20-07-01 C13329T,C29675T +England/ALDP-5A15D0/2020|20-06-14 G6589A,A22528G +589 G21724T +590 G11230T,G23587C +England/LEED-2AA4EC/2020|20-04-06 C22326T,C27128T +England/LEED-2AA394/2020|20-03-31 C20941T +591 T7792C +England/BRIS-1854318/2020|20-04-28 C4780T,G22468T +England/BRIS-12E6FA/2020|20-04-20 C14676T,C17119T +592 G17302T,C25046T +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 A5277G +593 C222T,C21780T +Wales/PHWC-16881C/2020|20-04-21 C19602T,G29779A +Wales/PHWC-3612C/2020|20-04-28 C7932T,C8964T,C13274T,C14097T +594 C20474T +England/PHEC-20B81/2020|20-04-16 +England/MILK-992E97/2020|20-08-26 A5128G,T6376A,C16329T,G25012A,C25728T,C27509T +595 T3163C +England/QEUH-95DD9B/2020|20-08-07 C2113T,T27856G +England/MILK-9570D4/2020|20-06-10 C7768T +596 C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 C4551T,G20238T +DV_IZSPB_236_S50|LR992121.1|20-08-29 +597 G1210T,G9802T,G12067T +England/SHEF-C184F/2020|20-08-31 G12907A,C13667T,C22450T,G25687A,T29785A +England/ALDP-9D8FFC/2020|20-09-18 T20613C +598 C3177T,G22093A +England/NORT-28B1EA/2020|20-04-18 C27741T +England/NORT-28B28D/2020|20-04-18 A8734G +599 G10265A +600 T13794G +England/ALDP-5D52BE/2020|20-06-18 T28494C +England/ALDP-6FAF24/2020|20-06-29 C6633T,C19862T +601 A15972G,C19718T,T28759C +England/MILK-B01F25/2020|20-10-23 C1722T,T3843C,G4300T,A4819G,C10277T,C15720T,C16114T,C17172T,A25351T,C27612T,A29031T,C29555T +Switzerland/210050/2020|LR882268.1|20-07-19 C203T,T3095C,C12880T,C23896T,C25831T,G28077T,C28603T +602 A23207G +England/ALDP-691499/2020|20-07-02 C8650T,A21177G,C28603T +England/ALDP-4A2BFC/2020|20-05-22 A20826G +603 A19650G +England/ALDP-9B5BC4/2020|20-08-28 A9433T,G11837T,C18807T,C21595T,A22024C,C22096T,C25546T +England/ALDP-49F5B8/2020|20-05-22 T21368C +604 C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +England/MILK-62FD59/2020|20-07-05 T17313C,C17502T,C20320T +England/ALDP-90DDC7/2020|20-06-26 G488T,C1514T,C18744T +605 C815T,C3411T,G25437T +USA/IL-UW-1082/2020|MT929034.1|20-07-27 C2388T,G19656A,C26527T +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 T10795C,C12374T,C18452T,G25775T,C28153T +606 C11620T +England/LIVE-9BC33/2020|20-04-21 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 C4540T,C28006T +607 C1170T +England/CAMB-1B087F/2020|20-05-04 T8416C,C11379T,C16178T,G27651C +England/PHEC-2223F/2020|20-04-30 C2488T,T7582C,C13671T +608 T3154C +England/ALDP-5A2A49/2020|20-06-14 C18981T +England/ALDP-5A2D6E/2020|20-06-14 T15231C,G19670A,G25687T +609 G16813A +USA/WA-S1407/2020|MT821568.1|20-05-19 T6023C,C19041T,A21312G,C28312T +USA/WA-S1434/2020|MT821707.1|20-05-21 C8802T +610 C6445T,G16852T +USA/WA-S2598/2020|MT831859.1|20-06-18 G29254T +USA/WA-S1840/2020|MT834024.1|20-05-27 T5335C,G14186A,C27059T +611 A5538T,T25783C +USA/WA-S1246/2020|MT821587.1|20-05-11 C10408T,T21802C,C26022T,C27059T +USA/WA-S820/2020|MT641503.1|20-04-15 G17261A +612 G27281T +England/CAMB-80B43/2020|20-04-11 C2334T,C23121T +England/CAMB-7666D/2020|20-03-29 G10870T,C21614T +613 G18803T,A22606G +USA/WA-S2573/2020|MT831840.1|20-06-17 +USA/WA-S2761/2020|MT947580.1|20-07-29 A5101G,A9830G,A12358T,G25922T +614 C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +England/ALDP-9BEB16/2020|20-09-09 G14428T +England/ALDP-A95376/2020|20-10-19 A9436T,C15848T,C17550T,G26153T +615 G11447A,C21648T +England/QEUH-A9F5D0/2020|20-10-20 C5717T,C10138T,C12559T,A19098G,C24130T +England/QEUH-96AEF2/2020|20-08-15 G7037T,C12488T +616 C19170T,G19509A +Scotland/CVR1557/2020|20-04-03 G23401T +Wales/PHWC-34610/2020|20-04-21 G16014A +617 C26313T +Netherlands/NA_436/2020|LR883367.1|20-04-07 G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 C4824T +618 C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +619 G174T,G210T,C2453T +England/CAMC-B36516/2020|20-11-05 C2918T +England/CAMC-B362D3/2020|20-11-05 C29311T +620 T8603C,A17615G,G25437T +England/MILK-B3A284/2020|20-11-01 C27046T +England/CAMC-B365AD/2020|20-11-05 T19232C +621 A1163T +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 C19273T +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 G15260T,G26268T +622 C7600T,G7798T,T23548C +AUS/VIC3114/2020|MT972550.1|20-07-06 C24912T,T27484C +AUS/VIC9664/2020|MW156172.1|20-08-12 C506T,G29072T +623 T7540C,G16647T,G22992A,G23401A +AUS/VIC13094/2020|MW185501.1|20-07-31 G6662A +624 C18555T,C22987T +AUS/VIC9179/2020|MW153248.1|20-08-21 G1338C,C5691T,A11425T,C20089T +AUS/VIC11646/2020|MW155572.1|20-07-22 G6617T +625 C19488T +England/CAMB-82060/2020|20-04-21 C5575T,A5991G,C13329T +England/CAMB-82E1B/2020|20-04-14 A8374T +626 G5572A,A6366T,G11410A,G25776T +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 A4228G,A11410G,G23403A +Poland/1/2020|LR899030.1|20-05-20 T241C,T9440G,G17964T,T19488C,G29747T +627 A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +England/CAMC-947259/2020|20-07-21 +England/MILK-9927C9/2020|20-08-27 T595C,G2659T,G15773A,C21789T,G24197T,G26172T +628 A11869G,T27484C +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 G29422T +629 C2399T +Scotland/EDB300/2020|20-03-29 C15240T +Scotland/CVR3194/2020|20-04-28 C10335T,A11430G,G19117T,G25429A,A27232G,C28940T +630 T4149C,C12525T,G25599T +England/CAMB-1AA438/2020|20-04-17 +England/CAMB-1AFB7A/2020|20-05-02 C6016T,A8031G,C29353T +631 A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +Wales/PHWC-48212D/2020|20-10-20 G22381T,C26029A +England/QEUH-9C80B0/2020|20-09-10 G22471T,T22896C +632 T1543A,T4369C,T22020C,C27911T +England/MILK-9C4087/2020|20-09-09 C1938T +England/QEUH-96F349/2020|20-08-17 G21606T,C21910T,T21976C,G28230T +633 T15978C,G24794T +England/BIRM-5FC3B/2020|20-05-28 A8390G,C18676T,C19366T,C28311T,G29764A +England/PHEC-13ADF/2020|20-03-13 +634 C8917T +England/BIRM-6529A/2020|20-09-30 C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T +USA/WA-S2831/2020|MW077478.1|20-09-08 C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C +635 G27996T +England/NORT-282796/2020|20-03-28 A1755G,C15824T +England/NORT-2839AE/2020|20-04-01 G29315T,G29468C +636 C527T,C1962T,C7735T,T23255C,A28065C +England/ALDP-951E49/2020|20-06-10 C16045T,C28732T +England/ALDP-9557A4/2020|20-06-12 C19454T,T19538C +637 G21255C,G28960T +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 C21364T,C26625T,C28744T +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 C21205T +638 C5700A +IND/GBRC203a/2020|MT669321.1|20-06-07 A2292C,C2836T,G25563T,C29750T +USA/WA-S2809/2020|MW077484.1|20-08-31 C313T,C1489T,G3287T,C9693T,C10815T,C15346A,C16626T,C25728T,G29474T,C29750T +639 G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +England/QEUH-96E025/2020|20-08-18 T1088C,C20736T +Scotland/QEUH-94375E/2020|20-08-02 G25785T +640 A20288G,C21721T,C26894T,C28638A +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 C478T,T2698C,G16068T,G16935T,G20679A,G29227T +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 G2635A,T7426C,A23234G +641 T3615C,G22256T,C23802T,A27403T,C27741T +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +642 C20233T,C22210T +Switzerland/220001/2020|LR882220.1|20-07-24 G94T,C5365T,C13708A,A26097G,G28003T +England/BIRM-6BECD/2020|20-11-17 G1738T,G4960T,A15477G,C22858T,C23705T,T25312C,C26681T,G27762C,G28056A,G28085T,C28603T,G29449A +643 A23063T +England/CAMC-946506/2020|20-07-15 C913T,C6636T,G21800T,C27972T,G28048T +AUS/VIC2173/2020|MT972184.1|20-06-24 G10540A,C26984T,T28196C +644 G596T,T18231C +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 T3127C +645 T10513C,T27851C,C29541T,C29739T +England/ALDP-94A63C/2020|20-06-11 A7291G,C7423T,C9979T,C26447T,C29077T +England/ALDP-52A636/2020|20-06-01 A2756G,C17550T +646 C16101T +England/SHEF-D1CE6/2020|20-04-28 C5339T,A29571T,C29572T,G29573A +England/SHEF-C0F96/2020|20-04-15 G12514T,A18616G,C28256T,G29779C +647 C21302T,C21304A,G21305A,G28884T +England/QEUH-B10460/2020|20-11-02 A15753G,A19655G,G27798T +Scotland/QEUH-96D5CD/2020|20-08-20 C4655T,G5305A,A5958G,C28887T +648 G5950T,C19164T,A21137G,T27447C,T29661C +ZW-6983|LR963462.1|20-05-01 C10341T +ZW-6978|LR963455.1|20-05-01 A13833G +649 A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 C28720T +England/MILK-1169960/2021|21-01-25 T4895C,C9072T,G20578A,G23948C,C24382T,G28209T,A28271G,C29769T +650 G5924A,T21775G +England/ALDP-952A44/2020|20-06-21 G16852T,G18984T +England/QEUH-9B4A22/2020|20-09-07 G2885A,C15026T,G17427T,G19635T,C21846T +651 C7095T,A16179G +Netherlands/NA_359/2020|LR883961.1|20-04-07 C13502T +Netherlands/NA_589/2020|LR883868.1|20-04-05 C21588T,G25012T +652 G4207T,A4208C,G11842T +England/CAMB-1AE7FF/2020|20-04-29 C6033T +England/CAMB-762D2/2020|20-03-28 C14757T,G16072T,A19743C,C22498T +653 G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +England/ALDP-BCA4B0/2020|20-11-23 +England/ALDP-119985B/2021|21-01-27 G7319A,G26526T,C27213T +654 C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +USA/WA-S1222/2020|MT821613.1|20-05-08 C186T +USA/WA-S1655/2020|MT834136.1|20-05-29 C15240T,C26607T +655 T15933C,T16968G,T29784C +Spain/R60/2020|LR884131.1|20-04-17 G3849A,G27506T,C29203T +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 A14424G,G18880T,C28057T,C29774T +656 C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +England/MILK-A06194/2020|20-10-01 C12513T,T29059C +England/CAMC-B32AA2/2020|20-11-05 G14528A,C16393T,T16695G,C24023T +657 G20980A +USA/FHCRC-19442/2020|MW593677.1|20-07-30 T5028C,C8818T,G9398T,C15952T +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 A1005G,T6407A,G20476T +658 T241C,G1440A,G2891A +England/CAMB-7772D/2020|20-03-31 C4668T,C21742T,C25931A +England/BRIS-12208F/2020|20-03-21 C14585T,C27603T +659 G28851T +Wales/PHWC-31CB7/2020|20-04-14 C9180T,C16466T,G19670A +Wales/PHWC-26D2B/2020|20-03-30 C5183T,G18651T +660 A14940G +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 A26120G +661 A1904G,C8090T,C10789T +Scotland/GCVR-171160/2020|20-03-26 A3958G,C5826T,C17074T +England/BRIS-130E2A/2020|20-03-24 C16658A,C17733T +662 T514C +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 C22033A +NED/NB02_13KS/2020|MT457397.1|20-04-29 G1607A,A10829G,G12795A,C17410T,A22920T +663 A12557G,C24904T,A27359G +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 C11050T +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 C25916T,G29751T +664 C25692T +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 T15867A +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 G10617A,G22225T +665 G29032A +England/BRIS-1258A2/2020|20-03-29 C6696T,C9096T,C29754T +England/SHEF-BFEBB/2020|20-03-24 C11747T,T24364G +666 C10277T +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 A6313G,T7191C,A7193G +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 G7273A +667 G29711T +668 C1218T,G27806T +England/ALDP-52C0FA/2020|20-06-01 C9870T,C10702T,T23047C +England/LIVE-9D7D6/2020|20-04-15 C27493T +669 A4838G,C7420T,C14937T,C20148T +USA/WI-UW-298/2020|MT706406.1|20-04-13 C7728T,C21637T +USA/WI-UW-314/2020|MT706422.1|20-04-16 G25907T +670 T2116A +USA/WI-UW-325/2020|MT706432.1|20-04-24 C12880T,C28854T +USA/WI-UW-290/2020|MT706398.1|20-04-08 A10070C,G28703C,C28849T +671 C28854T +672 C12710T +Scotland/CVR3488/2020|20-05-12 C10335T,C16428T,G22139C,C27737T +Scotland/CVR780/2020|20-03-27 C5997T +673 C11752T,C25665T,A27700G,T28854C,T28912C +Japan/TKYE63557_2020/2020|LC581365.1|20-03 C26447T +Japan/TKYE64688_2020/2020|LC581375.1|20-03 T1907G,C4456T,A10471G +674 C6312A,C13730T,C23929T,C28311T +USA/CA-QDX-33/2020|MT614459.1|20-03-15 C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 C11455T +675 C6310A,C19524T +MYS/188407/2020|MT372480.1|20-03-18 T25473C +AUS/VIC961/2020|MT451653.1|20-03-27 A9433G,T19035A,T29793C +676 C8782T,T28144C +677 A23403G,C26088T +678 G23403A +679 G9928T +Scotland/EDB5629/2020|20-03-24 G27870T +Scotland/EDB5040/2020|20-04-02 C593T +Scotland/EDB1824/2020|20-04-16 C8240T,T8941C,C9438T,C19185T,G27358T +Spain/H12_46/2020|LR884009.1|20-04-08 C7967T,C16694T +680 C3037T,A20268G +Spain/R11/2020|LR884126.1|20-03-06 T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 +HKG/HKU-904a/2020|MT365032.1|20-01-30 C4158T,C18828T +681 A17858G,C18060T +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 A7966G,A22422G +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 C4776T,C9491T,C17747T,G28086T +682 T9477A,C14805T,G25979T +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +683 C28863T +Spain/R10_33/2020|LR884127.1|20-03-02 T25979G +684 C28657T +685 C4540T +686 C25714T,C26029A +Scotland/CVR3062/2020|20-04-24 G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14 C15274T +687 C28311T +England/OXON-B0922/2020|20-03-28 C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31 G17632A +688 C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +USA/WA-S4100/2021|MW555971.1|21-01-18 G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19 C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +689 G22468T,G28878A,G29742A +690 T22468G +691 C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +England/ALDP-CB55B4/2020|20-12-20 C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21 G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +692 G16381A,T17877C,G25500T +USA/WI-UW-06/2020|MT772088.1|20-03-21 C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 C25854T +693 C24370T +GHA/34927_S20/2020|MT890226.1|20-05-23 C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24 C2306T,C5672T,C5986T,C13515T,G24926T +694 T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 A4984T,A7854G,A21062G,A28254C +695 A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 C6541T,C9988T,T25904C +696 G9802A,G11230T,A16512G,C19951T,G26428T +England/CAMC-C91F38/2020|20-12-11 C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 C10818T,T11230G,C25702T +697 T490A,C3177T,C24034T,T26729C,G28077C +USA/COVID20-0008/2020|MT764174.1|20-03-10 T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +698 C6696T +England/LIVE-9E66F/2020|20-04-10 C7765T,G10256T +Scotland/CVR705/2020|20-03-26 C11001T,G17122T +699 G1397A,T28688C,G29742T +England/PHEC-1A601/2020|20-03-04 A19526G +England/PHEC-2275E/2020|20-06-22 G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +700 A1079C,C9319T,C19862T,T27384C +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 C6701T,T7225C +701 C1076T +AUS/VIC1255/2020|MT451830.1|20-04-11 T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29 A28955T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_17_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,623 @@ +clade root_id from_tree_root +19A 1 +B 1 +B.26 4 > C7423T +B.48 5 > C20270T +B.15 8 > T4949C +B.5 9 > C29635T +B.54 10 > C14805T,G26144T +B.47 24 > A10982G +B.20 660 > A14940G +B.52 661 > A1904G,C8090T,C10789T +B.11 662 > T514C +B.46 663 > A12557G,C24904T,A27359G +B.1.14 664 > C25692T +B.27 665 > G29032A +B.19 666 > C10277T +B.6 674 > C6312A,C13730T,C23929T,C28311T +19B 676 > C8782T,T28144C +A 676 > C8782T,T28144C +B.10 698 > C6696T +B.4 699 > G1397A,T28688C,G29742T +B.23 6 > C20270T > A29683T +B.33 11 > C14805T,G26144T > T17247C +B.28 18 > C14805T,G26144T > G28842T +B.29 19 > C14805T,G26144T > C23707T +B.40 20 > C14805T,G26144T > A2480G,C2558T +B.30 21 > C14805T,G26144T > A4236G,T25655C +B.41 22 > C14805T,G26144T > G5572T +B.31 23 > C14805T,G26144T > G13627T,C15540T,A28338G +B.1 26 > C241T > C14408T +B.3 658 > C241T > T241C,G1440A,G2891A +B.18 668 > G29711T > C1218T,G27806T +B.13 669 > G29711T > A4838G,C7420T,C14937T,C20148T +B.51 670 > G29711T > T2116A +B.45 672 > C28854T > C12710T +B.12 673 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C +B.6.6 675 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T +A.1 681 > C8782T,T28144C > A17858G,C18060T +A.2 682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.3 697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.4 700 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C +B.4.5 701 > G1397A,T28688C,G29742T > C1076T +B.37 13 > C14805T,G26144T > T17247C > C8078T +B.35 14 > C14805T,G26144T > T17247C > A7479G,C25572T +B.32 15 > C14805T,G26144T > T17247C > A1587G +B.34 16 > C14805T,G26144T > T17247C > C988T +B.39 17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.3.1 659 > C241T > T241C,G1440A,G2891A > G28851T +A.5 678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +A.28 695 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +A.12 696 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T +20A 28 > C241T > C14408T > A23403G > C3037T +B.1.108 28 > C241T > C14408T > A23403G > C3037T +A.23.1 691 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +A.4 692 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T +A.11 693 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T +A.21 694 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +B.1.105 45 > C241T > C14408T > A23403G > C3037T > G28514T +B.1.152 46 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C +B.1.103 47 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T +B.1.188 48 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +B.1.378 49 > C241T > C14408T > A23403G > C3037T > G3871T +B.1.199 50 > C241T > C14408T > A23403G > C3037T > C2939T +B.1.139 51 > C241T > C14408T > A23403G > C3037T > A696C +B.1.91 52 > C241T > C14408T > A23403G > C3037T > G24077T +B.1.350 53 > C241T > C14408T > A23403G > C3037T > G25563T +B.1.216 267 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G +B.1.221 268 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.525 272 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +B.1.222 273 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A +B.1.379 274 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T +B.1.182 275 > C241T > C14408T > A23403G > C3037T > A20268G +B.1.5 341 > C241T > C14408T > A23403G > C3037T > C15324T +B.1.215 359 > C241T > C14408T > A23403G > C3037T > G3831A +B.1.177.24 360 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T +B.1.8 394 > C241T > C14408T > A23403G > C3037T > A24862G +B.1.179 395 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T +B.1.81 396 > C241T > C14408T > A23403G > C3037T > C1909T +B.1.201 397 > C241T > C14408T > A23403G > C3037T > C2940T +B.1.395 398 > C241T > C14408T > A23403G > C3037T > C6990T +B.1.384 400 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T +B.1.67 401 > C241T > C14408T > A23403G > C3037T > T26512C +B.1.98 402 > C241T > C14408T > A23403G > C3037T > C25350T +B.1.76 403 > C241T > C14408T > A23403G > C3037T > T17835C +B.1.383 404 > C241T > C14408T > A23403G > C3037T > A25575C +B.1.142 405 > C241T > C14408T > A23403G > C3037T > C14741T +B.1.131 406 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T +B.1.376 407 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T +B.1.23 408 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T +B.1.153 412 > C241T > C14408T > A23403G > C3037T > G14580T +B.1.113 413 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +B.1.70 414 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C +B.1.145 415 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A +B.1.197 416 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C +B.1.143 417 > C241T > C14408T > A23403G > C3037T > C4084T +B.1.187 418 > C241T > C14408T > A23403G > C3037T > A544G,C17104T +B.1.414 419 > C241T > C14408T > A23403G > C3037T > G20275A +B.1.93 420 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T +B.1.206 421 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T +B.1.390 422 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T +B.1.69 423 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T +B.1.77 424 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A +B.1.78 425 > C241T > C14408T > A23403G > C3037T > G29422T +20B 426 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C +B.1.195 653 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 654 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.1.134 657 > C241T > C14408T > A23403G > C3037T > G20980A +A.2.4 688 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +B.1.391 32 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T +B.1.104 33 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T +B.1.88 34 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T +B.1.79 38 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 39 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G +B.1.251 40 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T +B.1.250 41 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T +B.1.392 42 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G +B.1.252 43 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T +B.1.249 44 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T +B.1.110 54 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T +20C 61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.371 61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.440 211 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T +B.1.221.1 269 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 271 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +B.1.415 276 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C +B.1.223 304 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T +B.1.404 305 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T +B.1.181 307 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G +B.1.416 308 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T +B.1.225 311 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T +B.1.180 312 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C +B.1.189 313 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T +B.1.157 314 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C +B.1.418 315 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T +B.1.151 342 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T +B.1.220 343 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C +B.1.210 344 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T +B.1.178 345 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A +B.1.147 346 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T +B.1.213 347 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T +B.1.209 348 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G +B.1.149 349 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 350 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T +B.1.214 351 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +B.1.208 352 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +B.1.218 353 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 355 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T +B.1.128 356 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C +B.1.205 357 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G +B.1.97 358 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G +20E.EU1 361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.177.14 361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.35 399 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T +B.1.207 410 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T +B.1.198 411 > C241T > C14408T > A23403G > C3037T > A187G > C19066A +B.1.1.119 427 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A +B.1.1.77 655 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C +A.2.3 686 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A +A.2.2 687 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T +B.1.254 35 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C +B.1.88.1 37 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +B.1.110.2 60 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T +B.1.446 64 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A +B.1.437 65 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A +B.1.485 66 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C +B.1.22 67 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 68 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T +B.1.453 69 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T +B.1.362 78 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +B.1.489 79 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T +B.1.302 80 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G +B.1.431 81 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T +B.1.314 82 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T +B.1.333 83 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 84 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A +B.1.310 85 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T +B.1.509 105 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T +B.1.346 106 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 107 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A +B.1.521 108 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T +B.1.294 121 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A19899T,A21464G +B.1.306 122 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25777T,C29614T +B.1.39 123 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8788C,G26951A +B.1.324 124 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7528T +B.1.328 125 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C775T,C27923T,G28975T +B.1.341 126 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12557C +B.1.332 127 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1917T +B.1.325 128 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C23191T +B.1.293 129 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G15906T +B.1.311 141 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28893T +B.1.323 142 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T9070C +B.1.268 146 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3892T +B.1.318 147 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +B.1.369 148 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16260T,C28821A +B.1.287 149 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C20555T,C21772T +B.1.38 150 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G25523T,T27869C +B.1.515 151 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20049C,C21627A,C23655T +B.1.348 152 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 153 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C26625T +B.1.360 154 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27847T +B.1.366 155 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8041C,G22225T +B.1.363 156 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C335T,T16425G +B.1.305 157 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.117 158 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T +B.1.304 160 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 161 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11919T +B.1.330 162 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1463A,G7557A,C8818T +B.1.313 163 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5183T +B.1.331 164 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25976A +B.1.165 165 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7851T,C20233T +B.1.338 166 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25572T +B.1.452 167 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16762T +B.1.321 168 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G29291A +B.1.283 169 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A27821G +B.1.340 170 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,A28715T +B.1.444 171 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +B.1.166 172 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1887T +B.1.120 173 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C829T,G28371T +B.1.319 174 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10851T +B.1.167 175 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5312T,G27852T +B.1.267 176 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A8252G +B.1.487 177 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1734T,C23664T +B.1.355 178 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.516 179 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +B.1.337 180 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C475T,C5986T,A28389T +B.1.513 181 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G20709T +B.1.517 182 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3231T,A12850G,C21364T,A23064C,C28890T +B.1.168 183 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18213T,A18818G +B.1.312 184 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C9286T,G28899C +B.1.512 185 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25731T,C29625T +B.1.329 186 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C6406T,G18972A +B.1.315 187 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A24129G +B.1.335 188 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,A538G,T9107C +B.1.492 189 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T4888A,G28727T +B.1.115 190 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G7295T +B.1.276 192 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G26233T,C27881T +B.1.483 199 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T15366C +B.1.37 200 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C10712T +B.1.280 201 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C16616T,C26885T,C27603T,C28887T +B.1.13 202 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C14786T,G20578T +B.1.274 203 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > A716G +B.1.479 204 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G10631T +B.1.277 205 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C19884T +B.1.480 206 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C875T,A10904G,G25249T,C28854T +B.1.474 207 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 208 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C6401T,C13458T,C20946T +B.1.158 209 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 210 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T17838C,G26450T +B.1.442 249 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G28086T +B.1.441 250 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T8296C,C12076T,G28690T,C28854T +B.1.112 251 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A6512C +B.1.163 252 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G10793T +B.1.124 253 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A2161G,C16376T +B.1.439 254 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T1918C,C6402T,C8320T,C12171T +B.1.111 255 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C10507T +B.1.162 256 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C9195T,T15354C +B.1.385 257 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 258 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1154G,G29474T +B.1.245 259 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1096G,G14874T +B.1.436 265 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 266 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A11246T,A23949G,C29013T +B.1.232 278 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G27987T +B.1.243 279 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T24076C +B.1.240 280 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C18486T,T22162C +B.1.239 281 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G16741A +B.1.402 282 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4633T,T14643C,C22482T +B.1.397 283 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G1135T +B.1.229 284 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G7798T +B.1.400 285 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A +B.1.235 287 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T5507A +B.1.403 288 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4596A,G19086T +B.1.238 289 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C8683T +B.1.241 290 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C11575T +B.1.231 291 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1714T +B.1.399 292 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C28887T +B.1.236 296 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G11842A,A12759G,G18292T +B.1.447 297 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.406 298 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G25049T +B.1.408 299 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C29200T,C29451T +B.1.409 300 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +B.1.396 301 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1191T,C9521A,G29422T,A29567G +B.1.234 302 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 303 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.419 306 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T > G21778A,T28854C +B.1.190 340 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > G12550A,C20740A +B.1.177.11 365 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 366 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T +B.1.177.23 381 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.177.16 385 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C28310A +B.1.177.15 393 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.1.4 429 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C +B.1.1.131 447 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18115T +B.1.1.257 448 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C27046T +B.1.1.125 449 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T27264G +B.1.1.203 450 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1800A,C23854T,G25972A,G27842T +B.1.1.71 451 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T11638C +B.1.1.157 452 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17678T +B.1.1.63 453 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21597T,C29144T +B.1.1.250 454 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T +B.1.1.189 455 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9430T +B.1.1.201 456 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 457 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.196 458 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +B.1.1.172 459 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.205 460 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5539A,G21468A +B.1.1.304 461 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C936T,G3259T +B.1.1.192 462 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C673T +B.1.1.39 463 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G9130T,T27319C,G28487A,C28868T +B.1.1.174 464 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G443A,G28378T +B.1.1.194 465 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T +B.1.1.138 467 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +B.1.1.38 468 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.155 469 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 470 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3170T,C6336T,C27673T +B.1.1.128 471 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6781T,C11916T,C19185T +B.1.1.153 472 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +B.1.1.160 473 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.261 474 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C26447T +B.1.1.165 475 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 476 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T +B.1.1.277 483 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T +B.1.1.241 484 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C +B.1.1.255 485 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T +B.1.1.254 486 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T +B.1.1.105 487 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T +B.1.1.274 489 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T +B.1.1.180 490 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C +B.1.1.286 491 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A +B.1.1.55 492 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 493 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T +B.1.1.186 494 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T +B.1.1.275 495 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.253 496 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C +B.1.1.83 497 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T +B.1.1.1 499 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 510 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 511 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.247 512 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T +B.1.1.171 519 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1437T,G29745T +B.1.1.170 520 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2062T,C5184A,C13887T,C18687T,C23248T +B.1.1.114 521 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T +B.1.1.314 542 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C +B.1.1.98 551 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 552 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T +B.1.150 553 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17249T,G17722T +B.1.1.187 554 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G +B.1.1.164 555 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A +B.1.1.200 556 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T +B.1.1.137 557 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T +B.1.1.227 558 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.133 559 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G +B.1.1.302 561 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +B.1.1.297 562 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C +B.1.1.198 563 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.1.97 564 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 565 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T +B.1.1.237 566 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T +B.1.1.86 570 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.115 571 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C +B.1.1.234 574 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +B.1.173 578 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A +B.1.1.134 579 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T +B.1.1.287 580 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A +B.1.1.231 581 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C +B.1.1.37 582 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 583 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T +B.1.1.59 588 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T +B.1.1.16 593 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T +B.1.1.148 594 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T +B.1.1.12 595 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C +B.1.1.229 596 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 597 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T +B.1.1.168 598 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.147 604 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +B.1.1.225 605 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T +B.1.1.239 606 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T +B.1.1.313 607 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T +B.1.1.92 608 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C +B.1.1.26 609 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A +B.1.1.89 612 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T +B.1.1.116 613 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 614 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.67 615 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T +B.1.1.10 616 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 621 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T +B.1.1.217 625 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T +B.1.1.96 628 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 629 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T +B.1.1.178 630 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.315 631 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.1.280 632 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1543A,T4369C,T22020C,C27911T +B.1.1.56 633 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.182 634 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C8917T +B.1.1.193 635 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27996T +B.1.1.120 636 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C527T,C1962T,C7735T,T23255C,A28065C +B.1.1.132 637 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21255C,G28960T +B.1.1.32 638 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A +B.1.1.266 639 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +B.1.1.228 640 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20288G,C21721T,C26894T,C28638A +B.1.1.72 641 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.58 642 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20233T,C22210T +B.1.1.136 643 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A23063T +B.1.1.169 644 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.109 645 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T10513C,T27851C,C29541T,C29739T +B.1.1.154 646 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C16101T +B.1.1.44 647 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21302T,C21304A,G21305A,G28884T +B.1.1.111 648 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 649 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +B.1.1.263 650 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G +B.1.1.185 651 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.1.13 652 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4207T,A4208C,G11842T +B.1.1.224 656 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.110.1 59 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.44 71 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > C10376T,G18583T,G29773T +B.1.491 72 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > A3103C,C5893T,A28117T +B.1.361 74 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > T15276A,G28842T +20H/501Y.V2 75 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +B.1.309 87 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1990T,C2939T,A5264G,C16457T +B.1.359 88 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28376T +B.1.493 89 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G26020T +B.1.496 90 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.3 101 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C715T,A23586G +B.1.494 102 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C13252T +B.1.497 103 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +B.1.495 104 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28027T,G29742T +20G 109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 114 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T +B.1.336 115 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T +B.1.450 117 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G17808T +B.1.370 118 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C24378T +B.1.435 119 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C4878T,A22525G,C29272T,G29449T +B.1.423 120 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 131 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T +B.1.367 132 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.411 134 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +B.1.375 139 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > T1171C,A5747G,C10789T,G17259T,G24007A +B.1.433 140 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C6843T,T11764C,G29402T +B.1.12 144 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > C4320T +B.1.356 145 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > T13006C +B.1.519 159 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T > G28808T,G29434C +B.1.281 194 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C2937T +B.1.389 198 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +B.1.457 213 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C882T,C6990T +B.1.523 217 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +B.1.454 218 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G28851T +B.1.467 219 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G5206T,C26885T,G28875T +B.1.468 220 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T +B.1.460 222 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T181C,C8664T,C12525T,C15120T,G28975T +B.1.36 223 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.160 238 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 243 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.469 244 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +B.1.462 248 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C3811T,A6608G,A28911T +B.1.9.5 261 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T2113C,G9190T,G28851C +B.1.9.1 262 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T24923C +B.1.9.2 263 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T5941C,A22438T +B.1.9.4 264 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > C346T,A28959G +B.1.421 286 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +B.1.401 294 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C +B.1.405 295 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > G23522A +B.1.416.1 310 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T > C25731T,G28703C > C2706T,C28703G +B.1.256 339 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > C3411T,C3885T +B.1.177.26 375 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.25 380 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.17 383 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > C22088T,C29686T +B.1.177.13 384 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > G27877T +B.1.177.19 387 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > T29185A +B.1.177.20 388 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > C10626T +B.1.177.18 389 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > G25440T,C27752T +B.1.177.10 391 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G28321A +B.1.177.9 392 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G21800T,A22053C +B.1.1.74 430 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 431 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.3 435 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G10262A,C22995T,A27669G +B.1.1.290 436 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28256T,C29784T +R.1 437 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +B.1.1.5 439 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A11839G +B.1.1.222 440 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A23756G +B.1.1.184 441 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28905T +B.1.1.85 442 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +B.1.1.232 445 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > T2537G,G12191T,T16479C +B.1.1.8 446 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > C25528T +B.1.1.240 466 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +B.1.1.251 482 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.54 488 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T > C1471T +B.1.1.81 498 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T > C19366T +20D 500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.292 513 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C +B.1.1.303 528 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.305 529 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G28396A +B.1.1.215 530 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G1820A,C6541T +B.1.1.113 531 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > A11348G +B.1.1.281 532 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A +B.1.1.285 534 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 535 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C27128T +B.1.1.214 536 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T +B.1.1.272 537 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 538 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G22627A,G28628T +B.1.1.283 539 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G25563C,G28178T +B.1.1.181 540 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C2509T,C14724T,G24262T,G27703T +B.1.1.139 541 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > T27645A,G27666A +B.1.1.33 543 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.61 549 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > G18898T +B.1.1.249 550 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > C22314T,T24796C +B.1.1.204 560 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A +B.1.1.264 567 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > T5465C,G24102A +B.1.1.279 568 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G18859T +B.1.1.149 569 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.1.235 572 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T +B.1.1.207 576 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 577 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > C6312A +B.1.1.308 584 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G +B.1.1.311 585 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G11230T,G11401T,T24088C +B.1.1.309 586 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 587 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 590 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 591 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 592 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 600 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.70 601 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A15972G,C19718T,T28759C +B.1.1.299 602 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A23207G +B.1.1.301 603 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A19650G +B.1.1.233 610 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T +B.1.1.65 611 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > A5538T,T25783C +L.2 617 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +D.3 622 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > C7600T,G7798T,T23548C +20F 623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.219 626 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > G5572A,A6366T,G11410A,G25776T +B.1.1.218 627 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +B.1.110.3 57 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G27915A > C601T > G12832T +B.1.351 76 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T > A22206G +B.1.507 92 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G +B.1.503 93 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G25947C +B.1.499 94 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 95 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C19145T +B.1.502 96 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > T13914C +B.1.501 97 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,G26828T +B.1.500 98 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A9984C,G25445T +B.1.505 99 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T +B.1.504 100 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G26217T +B.1.426 112 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > A22320G +B.1.425 113 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > G9705T +B.1.514 116 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T > G10902A +B.1.427 136 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > G9738C,G13713A,C16394T +B.1.94 137 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T +B.1.282 196 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G28907T +B.1.477 197 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.466 215 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > C21614T +B.1.465 216 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > T241C,A8821G,C15752T,T26066C +B.1.36.20 221 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.23 232 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.16 233 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T +B.1.36.9 234 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +B.1.36.24 235 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 236 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 237 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.471 246 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T +B.1.472 247 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T +B.1.258 319 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A +B.1.177.21 368 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A +B.1.177.22 369 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T +B.1.177.2 377 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G +B.1.177.3 378 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T +B.1.177.4 379 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T +B.1.1.289 433 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A +B.1.1.2 434 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +B.1.316 438 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C +R.2 443 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C +20J/501Y.V3 478 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +P.2 480 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +B.1.1.143 481 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T +C.3 502 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T +C.14 503 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 504 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G +C.1 505 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T +C.16 506 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 507 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +C.2 508 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +C.4 509 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.1.294 515 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C +B.1.1.293 518 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +B.1.1.50 523 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T +B.1.1.209 524 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A +B.1.1.47 526 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T +B.1.1.284 527 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T +B.1.1.179 533 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.146 573 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T +B.1.429 138 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T +B.1.36.1 225 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +B.1.36.28 226 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 227 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T +B.1.36.27 228 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.21 230 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 231 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +20A.EU2 240 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.258.14 334 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T +B.1.258.2 336 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 338 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T +B.1.177.6 370 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T +B.1.177.12 371 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T +B.1.177.5 372 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T +B.1.177.7 373 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T +B.1.177.8 374 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T +N.1 545 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T +N.4 546 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G +N.3 547 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T +B.1.258.16 321 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T +G.1 337 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +M.1 517 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.160.7 242 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.258.6 324 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 325 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.258.10 327 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G +B.1.258.12 328 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A +B.1.258.17 333 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.258.4 331 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 332 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_17_path_mutations.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1235 @@ +sample_id path_from_root +England/BRIS-1853249/2020|20-04-02 (1) > C24034T (2) > C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 (1) > C24034T (2) > +Wales/PHWC-25B04/2020|20-03-24 (1) > C875T (3) > A20637G +Wales/LIVE-A6831/2020|20-03-16 (1) > C875T (3) > T14859C +Scotland/EDB1317/2020|20-04-09 (1) > C7423T (4) > G4207A,T7423C +Scotland/EDB354/2020|20-03-30 (1) > C7423T (4) > A29780C +England/SHEF-BFF8B/2020|20-03-25 (1) > C20270T (5) > C1473T +England/SHEF-BFFC7/2020|20-03-25 (1) > T4949C (8) > G28027T +England/PHEC-1E01E/2020|20-04-03 (1) > T4949C (8) > C22445T +DP0476/2020|LC571003.1|20-02-16 (1) > C29635T (9) > C29592T +DP0191/2020|LC570980.1|20-02-15 (1) > C29635T (9) > A3854G +England/EXET-135818/2020|20-04-11 (1) > C14805T,G26144T (10) > C7703T,T9352C,G27201T +England/LIVE-A5D06/2020|20-03-17 (1) > A10982G (24) > C6681T,G11801A +England/LIVE-A065B/2020|20-05-27 (1) > A10982G (24) > C823T,C8752T,A9741C,C19961T,C26333T,C26408T +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 (1) > A14940G (660) > C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 (1) > A14940G (660) > A26120G +Scotland/GCVR-171160/2020|20-03-26 (1) > A1904G,C8090T,C10789T (661) > A3958G,C5826T,C17074T +England/BRIS-130E2A/2020|20-03-24 (1) > A1904G,C8090T,C10789T (661) > C16658A,C17733T +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 (1) > T514C (662) > C22033A +NED/NB02_13KS/2020|MT457397.1|20-04-29 (1) > T514C (662) > G1607A,A10829G,G12795A,C17410T,A22920T +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 (1) > A12557G,C24904T,A27359G (663) > C11050T +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 (1) > A12557G,C24904T,A27359G (663) > C25916T,G29751T +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 (1) > C25692T (664) > T15867A +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 (1) > C25692T (664) > G10617A,G22225T +England/BRIS-1258A2/2020|20-03-29 (1) > G29032A (665) > C6696T,C9096T,C29754T +England/SHEF-BFEBB/2020|20-03-24 (1) > G29032A (665) > C11747T,T24364G +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 (1) > C10277T (666) > A6313G,T7191C,A7193G +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 (1) > C10277T (666) > G7273A +USA/CA-QDX-33/2020|MT614459.1|20-03-15 (1) > C6312A,C13730T,C23929T,C28311T (674) > C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 (1) > C6312A,C13730T,C23929T,C28311T (674) > C11455T +HKG/HKU-904a/2020|MT365032.1|20-01-30 (1) > C8782T,T28144C (676) > C4158T,C18828T +England/LIVE-9E66F/2020|20-04-10 (1) > C6696T (698) > C7765T,G10256T +Scotland/CVR705/2020|20-03-26 (1) > C6696T (698) > C11001T,G17122T +England/PHEC-1A601/2020|20-03-04 (1) > G1397A,T28688C,G29742T (699) > A19526G +England/PHEC-2275E/2020|20-06-22 (1) > G1397A,T28688C,G29742T (699) > G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +England/LIVE-A4C46/2020|20-03-12 (1) > C20270T (5) > A29683T (6) > G431A,G26754A,C28725T +Scotland/EDB046/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C9996T,T26144G +England/BRIS-12EEB6/2020|20-04-22 (1) > C14805T,G26144T (10) > G28842T (18) > C15240T,C18086T,T23031C +Scotland/EDB199/2020|20-03-26 (1) > C14805T,G26144T (10) > G28842T (18) > C22713T,G26031T +England/CAMB-74A09/2020|20-03-18 (1) > C14805T,G26144T (10) > C23707T (19) > G6981T,G10112T,G22785T +England/ALDP-9EE3AC/2020|20-05-06 (1) > C14805T,G26144T (10) > C23707T (19) > G20991T +England/CAMB-8042A/2020|20-04-10 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > A4015T +England/CAMB-737B8/2020|20-03-30 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > G3971T,G28380T +USA/WA-S885/2020|MT642386.1|20-04-22 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > G7739T,C25904T +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > A5269G,C9943T +USA/WA3-UW1/2020|MT163716.1|20-02-27 (1) > C14805T,G26144T (10) > G5572T (22) > T2446C,C3411T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 (1) > C14805T,G26144T (10) > G5572T (22) > C28311T +England/BRIS-1265AA/2020|20-04-10 (1) > C14805T,G26144T (10) > G13627T,C15540T,A28338G (23) > T9046C,C11779A,C27688T +AUS/NT38/2020|MT641726.1|20 (1) > C14805T,G26144T (10) > G13627T,C15540T,A28338G (23) > G1599T,C3096T,C12781T,G17944T +France/40002VJ/2020|MT470179.1|20-03 (1) > C241T (25) > C14408T (26) > C2416T,G12079C,C23220A +England/CAMB-7772D/2020|20-03-31 (1) > C241T (25) > T241C,G1440A,G2891A (658) > C4668T,C21742T,C25931A +England/BRIS-12208F/2020|20-03-21 (1) > C241T (25) > T241C,G1440A,G2891A (658) > C14585T,C27603T +England/ALDP-52C0FA/2020|20-06-01 (1) > G29711T (667) > C1218T,G27806T (668) > C9870T,C10702T,T23047C +England/LIVE-9D7D6/2020|20-04-15 (1) > G29711T (667) > C1218T,G27806T (668) > C27493T +USA/WI-UW-298/2020|MT706406.1|20-04-13 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T (669) > C7728T,C21637T +USA/WI-UW-314/2020|MT706422.1|20-04-16 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T (669) > G25907T +USA/WI-UW-325/2020|MT706432.1|20-04-24 (1) > G29711T (667) > T2116A (670) > C12880T,C28854T +USA/WI-UW-290/2020|MT706398.1|20-04-08 (1) > G29711T (667) > T2116A (670) > A10070C,G28703C,C28849T +Scotland/CVR3488/2020|20-05-12 (1) > C28854T (671) > C12710T (672) > C10335T,C16428T,G22139C,C27737T +Scotland/CVR780/2020|20-03-27 (1) > C28854T (671) > C12710T (672) > C5997T +Japan/TKYE63557_2020/2020|LC581365.1|20-03 (1) > C28854T (671) > C11752T,C25665T,A27700G,T28854C,T28912C (673) > C26447T +Japan/TKYE64688_2020/2020|LC581375.1|20-03 (1) > C28854T (671) > C11752T,C25665T,A27700G,T28854C,T28912C (673) > T1907G,C4456T,A10471G +MYS/188407/2020|MT372480.1|20-03-18 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T (675) > T25473C +AUS/VIC961/2020|MT451653.1|20-03-27 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T (675) > A9433G,T19035A,T29793C +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 (1) > C8782T,T28144C (676) > A17858G,C18060T (681) > A7966G,A22422G +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 (1) > C8782T,T28144C (676) > A17858G,C18060T (681) > C4776T,C9491T,C17747T,G28086T +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > +USA/COVID20-0008/2020|MT764174.1|20-03-10 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 (1) > G1397A,T28688C,G29742T (699) > A1079C,C9319T,C19862T,T27384C (700) > C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 (1) > G1397A,T28688C,G29742T (699) > A1079C,C9319T,C19862T,T27384C (700) > C6701T,T7225C +AUS/VIC1255/2020|MT451830.1|20-04-11 (1) > G1397A,T28688C,G29742T (699) > C1076T (701) > T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29 (1) > G1397A,T28688C,G29742T (699) > C1076T (701) > A28955T +England/LCST-24D7202/2020|20-06-22 (1) > C20270T (5) > A29683T (6) > A18671G (7) > C4021T,A9963T,T24027C +England/SHEF-BFF21/2020|20-03-25 (1) > C20270T (5) > A29683T (6) > A18671G (7) > +Switzerland/100159/2020|LR884273.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > C16995T +England/LOND-126031F/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > A20511G +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > +Wales/PHWC-285F4/2020|20-04-01 (1) > C14805T,G26144T (10) > T17247C (11) > A7479G,C25572T (14) > G12191T,G16188T,C19524T,C28887T +England/BRIS-130965/2020|20-04-13 (1) > C14805T,G26144T (10) > T17247C (11) > A7479G,C25572T (14) > C10741T,C27498T +Scotland/CVR44/2020|20-03-13 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > G443A +Scotland/CVR839/2020|20-03-27 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > T7816A,C24023T +Scotland/GCVR-170107/2020|20-03-23 (1) > C14805T,G26144T (10) > T17247C (11) > C988T (16) > G1857T,A5570G,A9483G +Scotland/CVR207/2020|20-03-18 (1) > C14805T,G26144T (10) > T17247C (11) > C988T (16) > G12832A +England/NORT-284A9B/2020|20-03-25 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > G28655A,C28657T +Scotland/CVR10/2020|20-03-10 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > T9223C,A21625G +Wales/PHWC-310CA/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > A2480G,A12529G,T14408C,G26144T +Wales/PHWC-31CB7/2020|20-04-14 (1) > C241T (25) > T241C,G1440A,G2891A (658) > G28851T (659) > C9180T,C16466T,G19670A +Wales/PHWC-26D2B/2020|20-03-30 (1) > C241T (25) > T241C,G1440A,G2891A (658) > G28851T (659) > C5183T,G18651T +Spain/H12_46/2020|LR884009.1|20-04-08 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > C7967T,C16694T +Spain/R11/2020|LR884126.1|20-03-06 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > +Spain/R10_33/2020|LR884127.1|20-03-02 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > T25979G +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T (695) > G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T (695) > C6541T,C9988T,T25904C +England/CAMC-C91F38/2020|20-12-11 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > G9802A,G11230T,A16512G,C19951T,G26428T (696) > C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > G9802A,G11230T,A16512G,C19951T,G26428T (696) > C10818T,T11230G,C25702T +Scotland/EDB5629/2020|20-03-24 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > G27870T +Scotland/EDB5040/2020|20-04-02 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > C593T +Scotland/EDB1824/2020|20-04-16 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > C8240T,T8941C,C9438T,C19185T,G27358T +England/ALDP-CB55B4/2020|20-12-20 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C (691) > C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C (691) > G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +USA/WI-UW-06/2020|MT772088.1|20-03-21 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > G16381A,T17877C,G25500T (692) > C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > G16381A,T17877C,G25500T (692) > C25854T +GHA/34927_S20/2020|MT890226.1|20-05-23 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C24370T (693) > C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > C24370T (693) > C2306T,C5672T,C5986T,C13515T,G24926T +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T (694) > C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 (1) > C8782T,T28144C (676) > G22468T,G28878A,G29742A (689) > T22468G (690) > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T (694) > A4984T,A7854G,A21062G,A28254C +England/BRIS-123965/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G7042T,G8861T (29) > C5806T,C10450T +England/BRIS-125347/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G7042T,G8861T (29) > +IND/Isolate_9088/2020|MW555597.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4809T (30) > G14245A,G28325A +IND/763/2020|MT577009.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4809T (30) > +England/CAMB-75BD8/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28514T (45) > C18060T +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28514T (45) > T4579A,C5175T,T18552C,C25521T,G27877T +England/ALDP-9ED9F6/2020|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1914A,T16456C (46) > C10681T,G16855T,C26060T,C29614T +England/ALDP-944BD9/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1914A,T16456C (46) > G4399T,G27746T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25665T,G28325T (47) > C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25665T,G28325T (47) > G16075T +USA/WA-S3017/2020|MW474188.1|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T (48) > G4508A,T7884C,C21811T +USA/WA-S2852/2020|MW079820.1|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T (48) > C17795T,G26230T +USA/WI-UW-26/2020|MT706147.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3871T (49) > A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3871T (49) > C19862T +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2939T (50) > C6401T,C18877T,G28882T +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2939T (50) > T11698C,C18322T +USA/IN-QDX-184/2020|MT786818.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A696C (51) > G3871T,T27299C +USA/WI-UW-558/2020|MT750137.1|20-06-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A696C (51) > +AUS/VIC2260/2020|MT972173.1|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G24077T (52) > G14294A,A23746G,T24077A,A29622C +England/EXET-1358BE/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G24077T (52) > A20092G,T28630G +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1997T +USA/WI-UW-1105/2020|MT929055.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T3011C,G22205T,T27869C,T28853G (267) > C1824T,C19718T,C25919T,C29149T +USA/RML-22/2020|MW221270.1|20-08-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T3011C,G22205T,T27869C,T28853G (267) > T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T +England/MILK-9750EF/2020|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G2407C,C2902T +BHR/740704818/2021|MW661071.1|21-01-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T (272) > C1593T,T16138C,C25667T +England/QEUH-E93C6A/2021|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T (272) > A1807G,C9565T,G18670A,C22480T,T23176C,G27916T +Scotland/CVR2931/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1545T,C22879A (273) > T1545C,C8334T,C19089T +Scotland/GCVR-172150/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1545T,C22879A (273) > +England/BRIS-124885/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A11782G,G22203T (274) > T2815C,T6892C +England/BRIS-122C4F/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A11782G,G22203T (274) > G27754T +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G28881A +England/NOTT-10E1B3/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T3952C,C6268T,T15324C +USA/WI-UW-37/2020|MT706158.1|20-03-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G11417T +Scotland/CVR2927/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3831A (359) > A1801G,C9857T,C18568T +Scotland/GCVR-173C30/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3831A (359) > T7441C +England/ALDP-A6CC8C/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C6627T,C25791T,C26270T +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A24862G (394) > T7132C,C8327T,C9112T,C24442T,G25429T +Switzerland/140091/2020|LR824563.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A24862G (394) > T658C,A2655C,C28629T +England/ALDP-49A5AE/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C7834T,C16997T,G25429T (395) > C2983T,G10565A,C17336T +England/ALDP-4A2A77/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C7834T,C16997T,G25429T (395) > +England/BRIS-12755E/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1909T (396) > C9438T,G16647T,C22264T +England/BRIS-12468B/2020|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1909T (396) > T27576C +England/NORW-E9DF7/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2940T (397) > C7765T +Scotland/EDB156/2020|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C2940T (397) > C4276T,C26822T,G29227A +Wales/PHWC-27B20/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > T22435C +Wales/PHWC-2624A/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C27476T +USA/UT-08320/2020|MW206019.1|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C26256T,C29668T (400) > A11782G,G27987T,C28292A,G29755T +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C26256T,C29668T (400) > C5184T,C5416T,G8017T +Wales/PHWC-2BF8A/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T26512C (401) > C19011T,C22323T,C26415T +Wales/PHWC-29E43/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T26512C (401) > G9220A +England/LOND-D3534/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25350T (402) > T27280C +England/PHEC-20C24/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C25350T (402) > C3096T,G3939A,G8179T +England/CAMB-7D2EA/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T17835C (403) > G26273T,C26408T,C29370T +England/LIVE-A63E5/2020|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T17835C (403) > G680T +Wales/PHWC-260C8/2020|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A25575C (404) > C12242T,C22264T +England/BRIS-12F969/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A25575C (404) > C96T,C4113T,G14857T +England/PHEC-2083F/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C14741T (405) > A187G,A5650G,C25350T +Wales/PHWC-16C6F0/2020|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C14741T (405) > T8944C,G25552T +England/QEUH-B2DD0B/2020|20-11-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A1610G,C9344T,C13335T,C28887T (406) > G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G +England/MILK-A7B0BB/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A1610G,C9344T,C13335T,C28887T (406) > C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T +Wales/PHWC-27461/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C5506T,G14241T (407) > C19374T +Wales/PHWC-29F13/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C5506T,G14241T (407) > C19151T,G23612A +AUS/VIC989/2020|MT451674.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T7438C,C29353T (408) > A26864G,C27630T +AUS/VIC1056/2020|MT451723.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T7438C,C29353T (408) > A21944T +England/LIVE-A65EF/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G14580T (412) > G10523C +Wales/PHWC-2B7CE/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G14580T (412) > C9857T,G28903C +IND/GBRC238b/2020|MT676367.1|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T (413) > T18877C,C22444T,C28887T,T29750C +IND/GBRC209a/2020|MT664202.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T (413) > G25563T +Scotland/GCVR-1725BE/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1884T,T26497C (414) > C6730T,G28001T +Scotland/CVR30/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C1884T,T26497C (414) > +IND/GBRC99/2020|MT509504.1|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G4866T,C14425A (415) > A21511G +IND/GBRC31/2020|MT467247.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G4866T,C14425A (415) > C3737T,C12710T,T21890C +AUS/VIC1239/2020|MT451821.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6723T,T26094C (416) > G28476T +AUS/VIC1282/2020|MW153048.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6723T,T26094C (416) > G6650T,T7034C,T18974G +IND/GBRC128/2020|MT539172.1|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4084T (417) > G5572T +IND/GBRC123/2020|MT539176.1|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C4084T (417) > G5194T,C22326T +POL/PL_MCB_32/2020|MW273814.1|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A544G,C17104T (418) > C1594T,A3090T,C23635T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A544G,C17104T (418) > +England/CAMB-7BED9/2020|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20275A (419) > A6672G,C10641T +Netherlands/NA_302/2020|LR878041.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20275A (419) > A3058G +England/NORT-289814/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C13862T,C28836T (420) > C9165T,T21033C +England/ALDP-9ED57A/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C13862T,C28836T (420) > A23796G,G23824T,C29095T +USA/WI-UW-1385/2020|MW035549.1|20-09-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G2282A,T9742C,C17639T (421) > C18508T,G19174T,G24883T,C26370T,C28868T +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G2282A,T9742C,C17639T (421) > G20160T +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C28603T,G28899T (422) > C10279T,C12132T,T16077C,T20401C +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C28603T,G28899T (422) > A2104G,T21656C,G25244C +Scotland/CVR129/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C23422T,T23849C,C29686T (423) > G29227A +Scotland/CVR52/2020|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C23422T,T23849C,C29686T (423) > C25667T +England/ALDP-94D8D9/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3338T,C3511T,A22301G,G29508A (424) > C19698T,C27393T +England/ALDP-9442D4/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G3338T,C3511T,A22301G,G29508A (424) > T3616A,T23686C,T27634C +Northern_Ireland/NIRE-1022CB/2020|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G29422T (425) > C1997T,C28708T +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G29422T (425) > C2509T,G12311T,C12357T,C20148T,C27925A +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > T241C +England/ALDP-BCA4B0/2020|20-11-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T (653) > +England/ALDP-119985B/2021|21-01-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T (653) > G7319A,G26526T,C27213T +USA/WA-S1222/2020|MT821613.1|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > C186T +USA/WA-S1655/2020|MT834136.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > C15240T,C26607T +USA/FHCRC-19442/2020|MW593677.1|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20980A (657) > T5028C,C8818T,G9398T,C15952T +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G20980A (657) > A1005G,T6407A,G20476T +USA/WA-S4100/2021|MW555971.1|21-01-18 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T (688) > G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T (688) > C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +England/CAMB-76515/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C16289T (32) > T25429G +England/CAMB-1AE294/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C16289T (32) > T4587A,G12833A,C15824T +England/LEED-2A8D10/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C13730T (33) > C25916T +England/CAMB-1AC6F4/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C13730T (33) > C6558T,G9130T,G26529T +England/CAMB-7EBDF/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A13433G,C18377T +Scotland/CVR2381/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > C1848T +Scotland/CVR2197/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > G21776T +Scotland/CVR3417/2020|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > A28841G (39) > G3689A,T11660A,C29743T +Scotland/CVR1519/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > A28841G (39) > A6441G +England/MILK-93B73B/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1141T (40) > C3817T,C25160T,C28099T +England/MILK-9589F6/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1141T (40) > C7488T,C14396T +England/BRIS-128441/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C28045T (41) > G10324T,C22713T +England/CAMB-7C39D/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C28045T (41) > G2885T,G26458C,C29253T +England/NORW-E8C37/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C3602T,A24232G (42) > C11460T +England/NORW-E75A6/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C3602T,A24232G (42) > T3602C,C6538T,T21206G +Wales/PHWC-3122E/2020|20-04-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1589A,G29474T (43) > A22457G +Wales/PHWC-1645EC/2020|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G1589A,G29474T (43) > A11438G +England/ALDP-50085E/2020|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G21538T (44) > T11164G,G15406T,G22332A,G27583T,G29427T +England/PHEC-127E8/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > G21538T (44) > +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T18877C,C25904T +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1683C,C22224T,C28367T +England/MILK-9A8AB8/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > C222T +England/CAMC-106415F/2021|21-01-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T (271) > C12116T,C12459T,A23503T,A23989T,C24023T,G28899A +England/CAMC-C470F2/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T (271) > C6794T,C8814T,C13452T +USA/WI-UW-1046/2020|MT928999.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15732T,T19143C (276) > G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15732T,T19143C (276) > G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T +Scotland/CVR3054/2020|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15438T (304) > T6673C,C28887T +England/MILK-95698F/2020|20-06-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G15438T (304) > G3340T,T7258C,T8941C,G12911A +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A +USA/AK-PHL414/2020|MT946886.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C2143T,C29370G (307) > G26062T,C29119T +USA/AK-PHL689/2020|MW173160.1|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C2143T,C29370G (307) > C6336T,G16853T,A21794G,G21800T,G25244T +England/MILK-974596/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C1625T,C19170T,A20829G,A25255G,C26469T,G27666T +England/NORW-ECD21/2020|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C12915T,G21255T (311) > C1684T,C6593T,G14829T,C23525T,G29744A +England/NORW-E755B/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C12915T,G21255T (311) > A4198C,C7011T +England/MILK-978626/2020|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T9697C (312) > C147T,C12473T,C19602T,C23266T,A29517G +England/MILK-9A565D/2020|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T9697C (312) > A2140G,C3015T,C9165T,C10448T,C11866T,T28813G +USA/NM-QDX-264/2020|MT806796.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C4582T (313) > G6404T,C17999T,T25123C,G28378T +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C4582T (313) > C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A +Scotland/EDB1198/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T17126C (314) > T5161A,C25046T,G29742T +England/PHEC-20A84/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > T17126C (314) > C28201T,C28546A +Scotland/EDB6324/2020|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C6472T,C7815T (315) > G22363T,T23406C,T26972C +Scotland/EDB4579/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C6472T,C7815T (315) > G13397A,C21682T +Wales/PHWC-360E3/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C18904T,G25606T (342) > A3260G,T7185C,G21867T,G25266T,A26513G,G29462C +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C18904T,G25606T (342) > C21646T,C22208T +Netherlands/NA_289/2020|LR878031.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T10561C (343) > C12085T,A23173G,C28844T +France/10065EE/2020|MT470176.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > T10561C (343) > C26895T,C29013T +IND/nimh-19510/2020|MW181843.1|20-05-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C3634T,C28854T (344) > C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T +IND/GBRC174b/2020|MT607610.1|20-06-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C3634T,C28854T (344) > C22444T +France/10036BG/2020|MT470106.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G28202A (345) > +IHUCOVID-0033|LR794417.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G28202A (345) > G16089A,G24794T +England/PORT-2D0D4C/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C25433T (346) > A10781G,A16169G,G21600T,C29546T +Switzerland/100210/2020|LR884314.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C25433T (346) > C1191A,G15260A +POL/PL_MCB_72/2020|MW273854.1|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A7031G,G13617T (347) > A2848G,C9286T,C23202T +POL/PL_MCB_97/2020|MW273879.1|20-05-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A7031G,G13617T (347) > C2570T +Scotland/CVR3629/2020|20-05-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > G18380T +Scotland/QEUH-5456F9/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > C6606T +England/QEUH-9CE80D/2020|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T (349) > A21018G,C21302T,C21304A,G21305A,C27167T,C28708T +England/QEUH-990752/2020|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T (349) > +AUS/VIC38/2020|MT450953.1|20-03-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C15277T (350) > C10350T +IHUCOVID-0133|LR794459.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > C15277T (350) > C8394T +England/PHEC-1555C0/2021|21-01-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T (351) > C673T,A11430G,C21846T,C22995A,C25504G,G25894A +England/MILK-E6578E/2020|20-12-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T (351) > C5184T,A9204G,A10248G,C19975A +England/CAMC-106052A/2021|21-01-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T (352) > C14184T,A15402G,C23170T,C24138A,C24381T,T25303C +England/LOND-12F6633/2020|20-12-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T (352) > G9425T,C21997T,G24116A,C29200T +Switzerland/240009/2020|LR880588.1|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A (353) > +Switzerland/240084/2020|LR880634.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A (353) > C815T,C8752T,C25904T,G27147T +USA/MN67-MDH67/2020|MT911566.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > G11596T (355) > +Netherlands/NA_292/2020|LR878032.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > G11596T (355) > G20568A +Switzerland/101166/2020|LR824397.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C17118T +PER/covper020/2020|MW030251.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C15277T,A21917G (357) > T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T +PER/covper091/2020|MW030227.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > C15277T,A21917G (357) > +England/CAMB-737D6/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > A2775G,G4255T,C13568T,A20355G (358) > C6861T +England/CAMB-1B08D9/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A26530G (354) > A2775G,G4255T,C13568T,A20355G (358) > C14235T,G25699T +Wales/PHWC-16930B/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C29200T (399) > C3264T +Wales/PHWC-34285/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C6990T (398) > C29200T (399) > A6616G,C12915T +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C16017T,T27212C,G27561T (410) > C16393T,G18546T,C24718A,C27600T,C29421T +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C16017T,T27212C,G27561T (410) > A10770G +England/BRIS-12B2BD/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C19066A (411) > A1699G,C6361T,C25797T,C27577T,C27641T +England/BRIS-128DCE/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A187G (409) > C19066A (411) > C12213T +England/CAMC-947875/2020|20-07-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25699T,G28884T,C28896T,C29738T +Spain/R60/2020|LR884131.1|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > G3849A,G27506T,C29203T +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > A14424G,G18880T,C28057T,C29774T +Scotland/CVR3062/2020|20-04-24 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C25714T,C26029A (686) > G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C25714T,C26029A (686) > C15274T +England/OXON-B0922/2020|20-03-28 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C28311T (687) > C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C28657T (684) > C4540T (685) > C28311T (687) > G17632A +England/CAMB-1AC7D3/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > A13863G +England/MILK-BB0F16/2020|20-11-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T (37) > G7675T,C12406T +England/CAMC-BBDD4C/2020|20-11-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T (37) > C2939T,C5934T,C21635T,T27988C,C28775T +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C815T,C3411T,T10795C,A17521G,C18452T +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > C23551T,G27084T +England/LEED-2A91D7/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > C23453T (60) > T1778C,C6762T,C28849T +England/LEED-2A87C7/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > C23453T (60) > G3230A +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24381T (62) > +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24381T (62) > C23718T +USA/VA-DCLS-0676/2020|MT911804.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/MI-QDX-476/2020|MW064508.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/WA-UW-4105/2020|MT358746.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A13512T,G13513T,G13514A (64) > T1333A,T1334A +USA/WA-UW-2220/2020|MT345839.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A13512T,G13513T,G13514A (64) > T1059C,C15763T,T25563G +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1298A (65) > G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1298A (65) > C344T,C5090T,C10228T,A22001G +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20037C (66) > G2900T,C23179T +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20037C (66) > G28073T +England/CAMB-7A7DF/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > G8578A +Netherlands/NA_18/2020|LR878352.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > C23506T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > A6035G +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2668T (69) > C1912T,G2867T,C12651T +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2668T (69) > T18240C,T28009C +England/LIVE-DAB556/2020|20-10-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T (78) > G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C +England/PHEC-14DE93/2020|20-11-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T (78) > G204T,C6286T,C21614T,C22227T,T26424C +Wales/PHWC-1658A6/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T,C24621T (79) > G2830A,A2903G,C7869T +Wales/PHWC-2E0A2/2020|20-04-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T,C24621T (79) > C18568T +England/ALDP-952A53/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18744T,A18978G,A29391G (80) > C1190T,G25273T,C29249T +England/ALDP-95A745/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C18744T,A18978G,A29391G (80) > G11708A,C14724T,C17550T +Scotland/EDB3137/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > G25494T,C29719T +Scotland/EDB2810/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > C19113T,T21752C +USA/CA-QDX-434/2020|MW064457.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A2018G,C18029T (82) > C8697T,T18029C +USA/UT-02231/2020|MT444626.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A2018G,C18029T (82) > C2445T,G20890A,G25947T,G28373T,G28374T +USA/WA-S2850/2020|MW079819.1|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T (83) > A4935G,T26510C,G29736T,C29762G +USA/WA-S2746/2020|MT947577.1|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T (83) > +USA/WI-UW-879/2020|MT846567.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G19542T,C23551T,C28821A (84) > G3403T,G13201T,C26527T +USA/UT-05590/2020|MW084605.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G19542T,C23551T,C28821A (84) > A2151G +Netherlands/NA_588/2020|LR883860.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18281A,A20755C,G25784T (85) > A20742G +Netherlands/NA_583/2020|LR883819.1|20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18281A,A20755C,G25784T (85) > C4113T,C6555T,C25731T +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1738T,C11916T,C28087T (105) > G3242A,T11449C,T14508C,A26126T,T28087C +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1738T,C11916T,C28087T (105) > G9928T,A20716G,A24383G,G25538T,G28123T +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T (106) > C676T,A3536G,C29370G +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T (106) > +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C379A (107) > C10369T,C12115T,G12202T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C379A (107) > A20503G +USA/WA-UW-2108/2020|MT345811.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G3259T,T27964C +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G14580A,T19527C,A19821G,G22346T,C28099T,C29722T +USA/WI-UW-1119/2020|MT929068.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A19899T,A21464G (121) > +USA/WI-UW-1005/2020|MT846691.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A19899T,A21464G (121) > G4232T,C9120T,A18500G,G22093A,T23296C,G25444A +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25777T,C29614T (122) > G23311T,G24977C +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25777T,C29614T (122) > G25471C,G28899T,G29779T +England/CAMB-7771E/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4586T +England/CAMB-7DC91/2020|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4321T +USA/WI-UW-1092/2020|MT929042.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7528T (124) > G271T,T13270C,C28093T,C28890T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7528T (124) > G8213A +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C775T,C27923T,G28975T (125) > C23683T +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C775T,C27923T,G28975T (125) > C3044T,C9979T,C10369T,G19072T +USA/WA-QDX-235/2020|MT806806.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12557C (126) > A23534T +USA/WA-S1266/2020|MT821676.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A12557C (126) > T4441C,G6125A,C17639T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1917T (127) > C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1917T (127) > G29431T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C23191T (128) > A25910C +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C23191T (128) > C9907T,C17125T,T18144C +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G15906T (129) > C5548T,C28153T +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G15906T (129) > T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28893T (141) > G22021A,C22998T,G23501T +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28893T (141) > T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T9070C (142) > C20325T +USA/CA-CZB0731/2020|MT385450.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T9070C (142) > G9049T,T10960C +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3892T (146) > G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3892T (146) > G20062T +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G (147) > G2272A,C7267T,G21193T +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G (147) > A5368G,C14220T,G21193T,C29363T +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16260T,C28821A (148) > C5979T,A9337G,C18695T +USA/IL-UW-385/2020|MT772536.1|20-05-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16260T,C28821A (148) > C12525T,G21604T,C25728T,G28378T +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C20555T,C21772T (149) > A6414G,A22101T,G24872T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C20555T,C21772T (149) > C16428T +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > C3044T +USA/WA-UW-2008/2020|MT326031.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > G4975T,T29194C +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20049C,C21627A,C23655T (151) > C11102T,A12174G +USA/UT-03041/2020|MW053962.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T20049C,C21627A,C23655T (151) > C22295T,C22323T +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > C13761T +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > A26864T +USA/WA-UW-6327/2020|MT412324.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C26625T (153) > C5240G +USA/WA-UW-3832/2020|MT358685.1|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C26625T (153) > C3141A,C17766T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27847T (154) > A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27847T (154) > C6628T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > C18029T +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > G26828A,C28005T +USA/WA-S2725/2020|MT947550.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C335T,T16425G (156) > G248T,T4138G,C9120T,A12197C,C15951T,G16425T,G22918T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C335T,T16425G (156) > G526C +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T (157) > C1912T,C21058T,G21468T,G25681A,C27603T +USA/WI-UW-994/2020|MT846680.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T (157) > +England/BRIS-128CA3/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > C4586T,C29738T +England/BRIS-12B1CF/2020|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > C7843T,C9438T,T15254C,T16062C +USA/WI-UW-491/2020|MT750074.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T (160) > C2003T,T22825C +USA/WI-UW-522/2020|MT750102.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T (160) > +USA/DC-HP00089/2020|MT509482.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11919T (161) > C9510T +USA/UT-03817/2020|MT873871.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11919T (161) > A13440G,C21998T +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1463A,G7557A,C8818T (162) > C3264T,G21204T +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1463A,G7557A,C8818T (162) > A20284G,C22477T,C23604T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5183T (163) > G28878T +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5183T (163) > A361G,C27596T +USA/MI-QDX-620/2020|MW064645.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25976A (164) > G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25976A (164) > C18981T +England/BRIS-12D9F2/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A20262G +England/BRIS-12B156/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A13707G +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25572T (166) > G29747T +AUS/VIC1161/2020|MT451779.1|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25572T (166) > C18744T,C29284T +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16762T (167) > G4105A,C4878T,G10759T,G18803T,A24478T,C29296T +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C16762T (167) > A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T +England/OXON-B15A5/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G29291A (168) > C6627T,A11740T,G18984T,C24023T +England/BRIS-129D72/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G29291A (168) > C1593T,C10440T +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A27821G (169) > C2878T,G3146A +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A27821G (169) > G7405T,G11113A,C12225T,G25437T,C25516T +USA/VA-DCLS-1282/2020|MW067700.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,A28715T (170) > C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T +USA/COVID20-1144/2020|MW067817.1|20-07-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,A28715T (170) > T25577G +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T (171) > G26730T +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T (171) > C5140T,G29290A +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1887T (172) > G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1887T (172) > A27979T +Wales/PHWC-1662B6/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C829T,G28371T (173) > G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A +Wales/PHWC-26B12/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C829T,G28371T (173) > +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10851T (174) > T3037C +USA/CT-UW-4372/2020|MT345874.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10851T (174) > C3768T,C25584T +England/BRIS-12BF3E/2020|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5312T,G27852T (175) > G4960T,C6633T,T10732C,T20285G,C28005T +England/BRIS-12DF1E/2020|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C5312T,G27852T (175) > A5452G,C21846T,G28337A,G28378T +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A8252G (176) > C8637T,C9360T,G11540T,A23299G,G25311T,G29745T +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A8252G (176) > G15193A,C25626G +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G840A,C19032T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G12160T +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T (178) > +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T (178) > C9996T,C27498T,G28362C +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T (179) > C1060T,C2358T,C4543T,C9226T,C22227T,T24326C,T25510A,T29171C,G29511T +USA/VA-DCLS-1517/2020|MW197475.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T (179) > A10912G,C12733T +USA/WI-UW-1268/2020|MW035438.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C475T,C5986T,A28389T (180) > C9491T,C12754T,G15100T,C15154T,C20970T,C28657T +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C475T,C5986T,A28389T (180) > C775T,C2488T +Northern_Ireland/NIRE-1021DD/2020|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G20709T (181) > A6360G +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G20709T (181) > C4002T,G17338T,A21080C,G22104T +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3231T,A12850G,C21364T,A23064C,C28890T (182) > T16752G,C23064A +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G3231T,A12850G,C21364T,A23064C,C28890T (182) > C823T,A9397G,A23362T,G26654T,G29140A +Scotland/EDB6146/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18213T,A18818G (183) > T7814C,C11339T,A21137G +Scotland/EDB6052/2020|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G18213T,A18818G (183) > +England/CAMB-7FBCF/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A12556G +England/CAMB-784BC/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A13852G +England/PHEC-15A73/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25731T,C29625T (185) > C7735T,C11757T,C18501T +USA/CA-QDX-796/2020|MW064788.1|20-03-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25731T,C29625T (185) > C16329T,C23536T,G27906T +B90|LR898037.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A21360C +O9|LR963074.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A1925C,C5796T +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A24129G (187) > G1325T,A6351C,C12741T +USA/WI-UW-738/2020|MT772509.1|20-06-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A24129G (187) > T3049C,G4972A +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,A538G,T9107C (188) > T4324G,C23029T,T26543A,A28254G +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C66T,A538G,T9107C (188) > G23426C,A26070G +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > T5674C,C8290T +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > C466T,A17691G +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G7295T (190) > C28290T +England/CAMC-946515/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G7295T (190) > C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G26233T,C27881T (192) > +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G26233T,C27881T (192) > A16766G,T28250G,G28681A +USA/WI-UW-249/2020|MT706376.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T15366C (199) > C8016T,G28903T +USA/WI-UW-84/2020|MT706205.1|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T15366C (199) > C18481T,G25687A,C29296T +USA/VA-DCLS-0593/2020|MT951960.1|20-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C10712T (200) > T25304C,C28890T +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C10712T (200) > T9708C +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C16616T,C26885T,C27603T,C28887T (201) > C7267T,A25201G,C29719T,C29774T +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C16616T,C26885T,C27603T,C28887T (201) > A7209G,C8950T,T17262C,T22645C,T29010C +England/PHEC-1C872/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C2453T,C11102T +England/BRIS-130015/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C6361T +USA/UT-04888/2020|MW084559.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > A716G (203) > G4960T,G21604T +USA/UT-04282/2020|MW084509.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > A716G (203) > C10456T,G19816T,G25494T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G10631T (204) > +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G10631T (204) > G8131T +Wales/PHWC-15DFD9/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C19884T (205) > G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T +Wales/PHWC-2AF12/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C19884T (205) > C26447A +England/CAMC-B533A0/2020|20-11-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C875T,A10904G,G25249T,C28854T (206) > C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C +England/MILK-9781E9/2020|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C875T,A10904G,G25249T,C28854T (206) > C1150T,C6525T,C13274T,C18555T,G19962C,C24378T +321398|LR962930.1|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > C22208T +England/QEUH-B8053B/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > G22225T +IHUCOVID-0441|LR794655.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C6401T,C13458T,C20946T (208) > T2578C,C13105T +IHUCOVID-0428|LR794641.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > C6401T,C13458T,C20946T (208) > T10480C +USA/WA-S4490/2021|MW648014.1|21-01-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G (209) > T17607C,G20396A +USA/WA-S3458/2020|MW494078.1|20-12-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G (209) > C3535T +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +Switzerland/100363/2020|LR884411.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +USA/VA-DCLS-0229/2020|MT558657.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G28086T (249) > C10582T,C11747T,G25459T,G25555T +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G28086T (249) > C27416T +Scotland/CVR3970/2020|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T8296C,C12076T,G28690T,C28854T (250) > G19846A,G20060T,C22227T,G22332T +England/MILK-A7D5AB/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T8296C,C12076T,G28690T,C28854T (250) > C1929T,C3777T,G8102T,C26165T,C26681T,G28916A +USA/UT-01683/2020|MT536956.1|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A6512C (251) > G370T,A3841T +USA/UT-03892/2020|MT711875.1|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A6512C (251) > C683T +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G10793T (252) > C29311T +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > G10793T (252) > G21724T,G25186A +USA/WA-S1281/2020|MT821642.1|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A2161G,C16376T (253) > G11417T +USA/WA-S2367/2020|MT831837.1|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A2161G,C16376T (253) > C5758T,T18453C,A28901G +USA/VA-DCLS-0804/2020|MT925987.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1918C,C6402T,C8320T,C12171T (254) > G28079T,G29540A +USA/VA-DCLS-1454/2020|MW067779.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > T1918C,C6402T,C8320T,C12171T (254) > G9190T,A11782G,G21893A,G26937A +England/NORW-E7EBA/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C10507T (255) > A476G,A16638G,G17893T +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C10507T (255) > C1403T,G7798T +USA/WI-UW-413/2020|MT772562.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C5884T,T9195C +USA/WI-UW-288/2020|MT706396.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C21855T +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T (257) > C7162T,G29745A +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T (257) > +England/MILK-99DB3B/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1154G,G29474T (258) > T5785A,G15705A,G25687T,G27598T +England/ALDP-5D3DEC/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1154G,G29474T (258) > +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > C1420T +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > G15982T,G24914T +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > C10741T +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A11246T,A23949G,C29013T (266) > C9967T +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > A11246T,A23949G,C29013T (266) > C5392T,C18654T,C19983T,G25177T +England/MILK-9C3D45/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > G2407T,G11761T (270) > C11494T,C20468T +England/QEUH-9C7EA8/2020|20-09-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (268) > G4442T,C6525T,A16044T (269) > G2407T,G11761T (270) > T2924C +Scotland/EDB3341/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G27987T (278) > +Scotland/EDB6880/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G27987T (278) > G6461T,C17550T,C24865T +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T24076C (279) > G7393T,C27804T +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T24076C (279) > C390T,A9984C,A15250G,G15253A,G18412T +England/ALDP-B252AA/2020|20-11-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C18486T,T22162C (280) > C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C18486T,T22162C (280) > C4898T,A11934T,G23868T +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G16741A (281) > G3259T,C7720T,G11146T,G22992T,G24781T,C25584T +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G16741A (281) > C1060T,C8334T,T21000C +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T (282) > G27506T +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T (282) > G23126T,G25775T +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G1135T (283) > G1148T,G28109T +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G1135T (283) > G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T +England/LOND-D5444/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G7798T (284) > C12789T +Scotland/CVR3238/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G7798T (284) > G22992T +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > A4143G,C6627T,C15960T,T19341C,A27834T,C28724T +Scotland/EDB3662/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T5507A (287) > A19855G +England/ALDP-6FB8FB/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > T5507A (287) > C335T,C9024T,G15906T,C21614T +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4596A,G19086T (288) > C23114T +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C4596A,G19086T (288) > G9111A,C13517T,C17639T,A20649T +England/LIVE-A00F3/2020|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C8683T (289) > C6336T,C12672T,C13335T,G26173T +England/QEUH-544733/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C8683T (289) > C7564T,C12400T +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C11575T (290) > G6884A,C13487T,A16840C,C19029T,T22222C,C28115T +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C11575T (290) > A1291G,A2342G,A7291G,T7645C,C7768T +England/MILK-654007/2020|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1714T (291) > C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C +England/OXON-B1781/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1714T (291) > C27213T +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C28887T (292) > G1843A,C3828T,C12880T,C19386T,G25252T +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C28887T (292) > C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T +Switzerland/220021/2020|LR882232.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G11842A,A12759G,G18292T (296) > A2679G,C11767T +England/QEUH-96E08F/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G11842A,A12759G,G18292T (296) > G11230T,G13459T,G26450T +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > C24258T +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > +England/MILK-977645/2020|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G25049T (298) > C3695T,C18744T +England/CAMC-B325A1/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G25049T (298) > G5504A,T25570C,C27303A,C28697T +England/CAMC-B34141/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C29200T,C29451T (299) > G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T +England/MILK-A795AF/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C29200T,C29451T (299) > C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T (300) > C3397T,C18591T +England/PHEC-14F392/2020|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T (300) > G3527A,T11008C,C13059T,A26594T +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1191T,C9521A,G29422T,A29567G (301) > C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C1191T,C9521A,G29422T,A29567G (301) > C24904T,A26986T +USA/WI-UW-1288/2020|MW035458.1|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G2258A,A6441G,C8140T,A9204G,C29445T (302) > C884T +USA/WA-S2808/2020|MW077495.1|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G2258A,A6441G,C8140T,A9204G,C29445T (302) > A19137T,C19366T,G29384T +England/CAMC-94C02D/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > C27371T +England/MILK-95DBDD/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > A20667G +England/CAMB-79ECC/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > G21778A,T28854C (306) > +England/PHEC-224A2/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > A10323G,C28854T (305) > G21778A,T28854C (306) > C9979T,G21853T,G29195T,C29272T +Switzerland/310363/2020|LR898676.1|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > G542A,A4372C,C10277T,G14268A,G29747T +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > G12550A,C20740A (340) > C6628T,C18483T +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > G12550A,C20740A (340) > C17977T,G28975T +England/PHEC-152C73/2020|20-11-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C21682T +Scotland/QEUH-96B4E0/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T12226C (364) > C3093T,C11102T,C18555T +England/MILK-9AA782/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T12226C (364) > C16362T,C19164T,G21786T,C24904T +Scotland/QEUH-9D11C0/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T (365) > C24334T +England/QEUH-A0077A/2020|20-10-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T (365) > C6027T,T10977C,A25327G +England/ALDP-AA0ED1/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C445T,G28079T +England/QEUH-A4CF6B/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C4534T,C5544T +Switzerland/270068/2020|LR882987.1|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T (381) > G17058T +Switzerland/332169/2020|LR898966.1|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T (381) > G21830T,C27881T +England/MILK-ABB8D5/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C28310A (385) > C9857A,A28304T +England/NORT-2884A8/2020|20-11-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C28310A (385) > C6525T,C10376T,G17032A,C23557T,C24106T +England/QEUH-AD0DDB/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T (393) > G14187A,A25948T,C29274T +Wales/MILK-9E3240/2020|20-09-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T (393) > A9409G,T29604C +GRC/202_32984/2020|MT459870.1|20-03-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +GRC/208_33922/2020|MT459876.1|20-03-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +England/PORT-2D3B4F/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C17410T,C18788T,G21830C,C27688T,G29742T +England/EXET-136EE8/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C4784T,C15720T,C23664T +England/PHEC-215FB/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18115T (447) > A5855G,C18110T,A27277G +England/PHEC-1B7C1/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18115T (447) > +Switzerland/120182/2020|LR860799.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C27046T (448) > G13897T,C24621T,T26038C,G26550A,T27046C +England/ALDP-9545BA/2020|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C27046T (448) > T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C +England/ALDP-651C9D/2020|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > C3698T,A28765T +Scotland/CVR3919/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > A22330G +England/ALDP-9558ED/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,C23854T,G25972A,G27842T (450) > G2398A +England/NORT-286255/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,C23854T,G25972A,G27842T (450) > C5000T,C13883T,C18395T +England/BRIS-12F78D/2020|20-03-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C25584A +Switzerland/100802/2020|LR824314.1|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C8389T,C29708T +England/NORT-282972/2020|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > +England/CAMB-80554/2020|20-04-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > T3745C +PHL/UPMNIH_C1/2020|MW243995.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21597T,C29144T (453) > C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T +PHL/COVID-6009/2020|MT919790.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21597T,C29144T (453) > C3736T,T10771C,C13051T,C26305T +England/PHEC-20E4C/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > C7200T,C8290T +England/NORT-283B7B/2020|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > T28118C,G29227A +England/ALDP-95665B/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9430T (455) > G571A,G9575A,C10074T +England/CAMB-7767B/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9430T (455) > C23802T,C28045T +England/CAMC-94328A/2020|20-07-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +England/CAMC-9424A3/2020|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T (457) > +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T (457) > G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T +England/MILK-A79D10/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T (458) > C4113T,T17214C,C19324A,G28044T +England/PHEC-148F95/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T (458) > C2644T,C9319T,G13348T,C19113A +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C2842T,C18570T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C17125T +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5539A,G21468A (460) > T1937C,A15820G,T22441G +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5539A,G21468A (460) > C6578T,C16049T,G19872C,C26768T +USA/VA-DCLS-1485/2020|MW205988.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C936T,G3259T (461) > C8326T,G21641T,C26681T +USA/VA-DCLS-1212/2020|MW067767.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C936T,G3259T (461) > A20860G,C28087T +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C673T (462) > C379T,T4125C,C14220T,T25479A +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C673T (462) > +Switzerland/250060/2020|LR881882.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G9130T,T27319C,G28487A,C28868T (463) > G1186A,C3738T,C16111T,G29706T +England/QEUH-A77F0D/2020|20-10-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G9130T,T27319C,G28487A,C28868T (463) > C6091T,G9389A,G12845A,C18713T,G24095T,G25249T +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G443A,G28378T (464) > C21614T,C21855T,T23042C +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G443A,G28378T (464) > T6579C +England/OXON-AEBC7/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > C9430T +England/QEUH-96E27A/2020|20-08-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T (467) > C936T,G25785T,G28857T +England/MILK-74C001/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T (467) > C21789T,G29779T +England/LOND-D4C6B/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A8681G,C10369T +Wales/PHWC-164485/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A16653G +England/ALDP-5C701F/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T (469) > T1863C,T19983C +England/ALDP-51F142/2020|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T (469) > +England/ALDP-955FAC/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,C27673T (470) > A2130T,C11572T,C19961T,G20006T,C25207T +England/ALDP-49E391/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,C27673T (470) > T26260G +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6781T,C11916T,C19185T (471) > A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6781T,C11916T,C19185T (471) > A16920G,G25906T +England/LOND-126DFA5/2020|20-12-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T (472) > C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T +Wales/PHWC-4846A4/2020|20-10-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T (472) > C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T +Northern_Ireland/NIRE-10677D/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > G18148A +Northern_Ireland/NIRE-106740/2020|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > C11259T,C26681T +England/SHEF-C9FBB/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C26447T (474) > C1190T,A25410C,C25831T,T26447C +England/LOND-D6531/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C26447T (474) > C2710T,T2872C,C3041A +England/MILK-9705F4/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > C15045T +England/ALDP-9B6440/2020|20-08-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > +Scotland/EDB6515/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > +England/QEUH-AD487C/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T772C,A2869G,C10868T,G15652T,C29095T (483) > C186T,C12025T,C28819T +England/QEUH-9B7B2C/2020|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T772C,A2869G,C10868T,G15652T,C29095T (483) > T14313C,G23438T +Switzerland/250070/2020|LR881870.1|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11782G,T21570G,T25473C (484) > C512T,T28297C +England/QEUH-9B5344/2020|20-09-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11782G,T21570G,T25473C (484) > C27641T,G28913T +England/ALDP-6839B9/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T (485) > A27691T +England/ALDP-6BAB59/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T (485) > C11620T,C22993T +FRA/Env-Di/2020|MT709105.1|20-05-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1427T (486) > G3419A,G3871T,C13517T +AUS/VIC1786/2020|MT612326.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1427T (486) > C6195T,C10969T,T17568C,G20679T,T28098C,C29722T +England/CAMB-7620F/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4876T,T12809C +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4795T,C29171T +England/PHEC-1DF03/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C18568T,G24348T +England/CAMB-1AB21F/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C6385T,C12880T +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > T28010A,T28127C +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > C18652T +England/QEUH-9DE381/2020|20-09-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3323T,C10369T,G18674A (491) > C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G +England/QEUH-95E7D8/2020|20-08-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3323T,C10369T,G18674A (491) > C14177T,C25553T,C28121T +England/NOTT-111E3E/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C (492) > G199T,C9474T,C17163T,G25186T,G29688T +England/NOTT-111117/2020|20-05-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C (492) > +England/ALDP-68EFBC/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T (493) > C23430T +England/ALDP-91F278/2020|20-06-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T (493) > A5695G,C10116T,C23855T +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4113T,G21974C,C23191T (494) > C1347T,C6190T,C11758T,C12741T +USA/WI-UW-1202/2020|MW035373.1|20-08-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4113T,G21974C,C23191T (494) > C23910T,G27327T,G28690T +England/PHEC-16F19/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > C4570A +England/GSTT-265D4DF/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > +England/LIVE-A2765/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4391A,C15848T,T19893C (496) > C16084T,C19185T,C26625T +England/ALDP-658C87/2020|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4391A,C15848T,T19893C (496) > C1263T,G19254T,C25889T +Northern_Ireland/NIRE-1038B9/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > G25947C,C28312T +Northern_Ireland/NIRE-FCE85/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C12747T,G18028T +England/NORT-283BE4/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C24026T +DK/AD3_Farm1/2020|MT919525.1|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > A5421G,A22920T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > +England/BRIS-123EDF/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C2509T +England/BRIS-123F09/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C9118T +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T +England/ALDP-9ECEAD/2020|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1437T,G29745T (519) > C3874T,A6659G,T8008C,C27944T +England/BRIS-12DC53/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1437T,G29745T (519) > G4720A,A4928T +Scotland/QEUH-7B078B/2020|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2062T,C5184A,C13887T,C18687T,C23248T (520) > G14055T,C19269T +England/MILK-993EA5/2020|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2062T,C5184A,C13887T,C18687T,C23248T (520) > C10252T,C16733T,G25595T +England/BRIS-124C89/2020|20-03-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T313C,C29119T,C29585T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C3096T +England/LOND-D53CF/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G621A +USA/WA-S2724/2020|MT947562.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +USA/WA-S2728/2020|MT947566.1|20-07-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +Scotland/EDB5196/2020|20-05-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G26615T (552) > C13384T,A18902C,C27644A,A29767C +Scotland/CVR3185/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G26615T (552) > C16946T +England/BRIS-127363/2020|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17249T,G17722T (553) > G174T,G5572T,G12202T,T16521C +England/BRIS-127A40/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C17249T,G17722T (553) > G2659T +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10260G,A10880G (554) > G16197T,C24382T +England/MILK-99DE32/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10260G,A10880G (554) > C2880T,A4044C,C6896T,A8413G,G19086T +England/CAMB-83A9E/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > G7761A,C14931T +England/EXET-136ED9/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > C8733T +England/ALDP-955D39/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3896T (556) > G5629T,G19889T,C27673T +Switzerland/300258/2020|LR898536.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G3896T (556) > C6701T,C12116T,C14352T,G17334T +England/SHEF-D1D3E/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18713T (557) > C21618T,C25047T,C29095T,G29747T +England/SHEF-CBE43/2020|20-04-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C18713T (557) > C11396T,C17676T +England/CAMC-949688/2020|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T (558) > T3694C,G20580T +England/SHEF-C3AED/2020|20-07-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T (558) > C401T,T1438C +England/ALDP-90D6AE/2020|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > A3776G,C21855T,G25166C,C25831T,C26111T,C26195T +POL/PL_P12/2020|MT511068.1|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > C106T,C8025T +England/QEUH-99923A/2020|20-08-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G (561) > G974A,C7267T +England/MILK-825C54/2020|20-07-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G (561) > G680A,C14120T +England/MILK-9E2BDD/2020|20-09-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20742C (562) > A9337G,A27086T +Northern_Ireland/NIRE-1088C3/2020|20-09-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20742C (562) > C16260T,G25340T,C27684T +England/MILK-99D755/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T (563) > T4303C,C25553T,G25599T +England/MILK-99D764/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T (563) > G20125A,G22484T +England/ALDP-907D09/2020|20-06-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > C20320T +England/MILK-85E3E4/2020|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > G2144T +England/MILK-95862C/2020|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T (565) > G28557T +England/ALDP-94EF88/2020|20-06-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T (565) > C2106T,C12073T,C14676T,T20989C +England/PHEC-219E0/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T23227C +England/LEED-2AA59E/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C28969T +England/ALDP-95A754/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > T20764C +England/ALDP-95CEA8/2020|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > C14931T +England/MILK-629D13/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G1820A,C11003T,T13417C,G22409T,C25896T,G25963A +England/PORT-2F5752/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G (574) > C18329T,G20062T,C23185T +England/QEUH-96A4C3/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G (574) > G3403T,C5691T +England/SHEF-C13B7/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > G10870T,C15315T +England/SHEF-10B2E79/2020|20-05-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > A9272C,G26416T +England/OXON-AEF9E/2020|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C140T,T6582A +Wales/PHWC-162E7A/2020|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C5497T +USA/WI-UW-982/2020|MT846668.1|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12488T,C25528T,G27084A (580) > G17964T,G22801T +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12488T,C25528T,G27084A (580) > A22108G,C28344T +USA/FL-QDX-228/2020|MT806770.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A25505C (581) > G675T,C4456T,A21625G +USA/VA-DCLS-0920/2020|MT929088.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A25505C (581) > C8664A,G8851A,C19983T,G29755T +England/ALDP-71D072/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T26156C +England/MILK-9573DB/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T9292C,C21910T +England/ALDP-954C6A/2020|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G27857T +England/ALDP-A524EB/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C3099T,C17678T,G19816A,C25728T +Wales/ALDP-6C3E72/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > C13329T,C29675T +England/ALDP-5A15D0/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > G6589A,A22528G +Wales/PHWC-16881C/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C222T,C21780T (593) > C19602T,G29779A +Wales/PHWC-3612C/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C222T,C21780T (593) > C7932T,C8964T,C13274T,C14097T +England/PHEC-20B81/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20474T (594) > +England/MILK-992E97/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20474T (594) > A5128G,T6376A,C16329T,G25012A,C25728T,C27509T +England/QEUH-95DD9B/2020|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C2113T,T27856G +England/MILK-9570D4/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C7768T +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T (596) > C4551T,G20238T +DV_IZSPB_236_S50|LR992121.1|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T (596) > +England/SHEF-C184F/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T (597) > G12907A,C13667T,C22450T,G25687A,T29785A +England/ALDP-9D8FFC/2020|20-09-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T (597) > T20613C +England/NORT-28B1EA/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > C27741T +England/NORT-28B28D/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > A8734G +England/MILK-62FD59/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G (604) > T17313C,C17502T,C20320T +England/ALDP-90DDC7/2020|20-06-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G (604) > G488T,C1514T,C18744T +USA/IL-UW-1082/2020|MT929034.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C815T,C3411T,G25437T (605) > C2388T,G19656A,C26527T +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C815T,C3411T,G25437T (605) > T10795C,C12374T,C18452T,G25775T,C28153T +England/LIVE-9BC33/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > C4540T,C28006T +England/CAMB-1B087F/2020|20-05-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1170T (607) > T8416C,C11379T,C16178T,G27651C +England/PHEC-2223F/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1170T (607) > C2488T,T7582C,C13671T +England/ALDP-5A2A49/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3154C (608) > C18981T +England/ALDP-5A2D6E/2020|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3154C (608) > T15231C,G19670A,G25687T +USA/WA-S1407/2020|MT821568.1|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > T6023C,C19041T,A21312G,C28312T +USA/WA-S1434/2020|MT821707.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C8802T +England/CAMB-80B43/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > C2334T,C23121T +England/CAMB-7666D/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > G10870T,C21614T +USA/WA-S2573/2020|MT831840.1|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G (613) > +USA/WA-S2761/2020|MT947580.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G (613) > A5101G,A9830G,A12358T,G25922T +England/ALDP-9BEB16/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A (614) > G14428T +England/ALDP-A95376/2020|20-10-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A (614) > A9436T,C15848T,C17550T,G26153T +England/QEUH-A9F5D0/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G11447A,C21648T (615) > C5717T,C10138T,C12559T,A19098G,C24130T +England/QEUH-96AEF2/2020|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G11447A,C21648T (615) > G7037T,C12488T +Scotland/CVR1557/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G23401T +Wales/PHWC-34610/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G16014A +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C19273T +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > G15260T,G26268T +England/CAMB-82060/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > C5575T,A5991G,C13329T +England/CAMB-82E1B/2020|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8374T +SAU/KFSHRC44/2020|MT820480.1|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > +SAU/KAIMRC67/2020|MT820487.1|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > G29422T +Scotland/EDB300/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2399T (629) > C15240T +Scotland/CVR3194/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C2399T (629) > C10335T,A11430G,G19117T,G25429A,A27232G,C28940T +England/CAMB-1AA438/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T (630) > +England/CAMB-1AFB7A/2020|20-05-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T (630) > C6016T,A8031G,C29353T +Wales/PHWC-48212D/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G (631) > G22381T,C26029A +England/QEUH-9C80B0/2020|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G (631) > G22471T,T22896C +England/MILK-9C4087/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,T4369C,T22020C,C27911T (632) > C1938T +England/QEUH-96F349/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,T4369C,T22020C,C27911T (632) > G21606T,C21910T,T21976C,G28230T +England/BIRM-5FC3B/2020|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T (633) > A8390G,C18676T,C19366T,C28311T,G29764A +England/PHEC-13ADF/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T (633) > +England/BIRM-6529A/2020|20-09-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C8917T (634) > C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T +USA/WA-S2831/2020|MW077478.1|20-09-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C8917T (634) > C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C +England/NORT-282796/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > A1755G,C15824T +England/NORT-2839AE/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > G29315T,G29468C +England/ALDP-951E49/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C527T,C1962T,C7735T,T23255C,A28065C (636) > C16045T,C28732T +England/ALDP-9557A4/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C527T,C1962T,C7735T,T23255C,A28065C (636) > C19454T,T19538C +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21255C,G28960T (637) > C21364T,C26625T,C28744T +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21255C,G28960T (637) > C21205T +IND/GBRC203a/2020|MT669321.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C5700A (638) > A2292C,C2836T,G25563T,C29750T +USA/WA-S2809/2020|MW077484.1|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C5700A (638) > C313T,C1489T,G3287T,C9693T,C10815T,C15346A,C16626T,C25728T,G29474T,C29750T +England/QEUH-96E025/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T (639) > T1088C,C20736T +Scotland/QEUH-94375E/2020|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T (639) > G25785T +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20288G,C21721T,C26894T,C28638A (640) > C478T,T2698C,G16068T,G16935T,G20679A,G29227T +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A20288G,C21721T,C26894T,C28638A (640) > G2635A,T7426C,A23234G +England/CAMB-7C12A/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +England/CAMB-83348/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +Switzerland/220001/2020|LR882220.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20233T,C22210T (642) > G94T,C5365T,C13708A,A26097G,G28003T +England/BIRM-6BECD/2020|20-11-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C20233T,C22210T (642) > G1738T,G4960T,A15477G,C22858T,C23705T,T25312C,C26681T,G27762C,G28056A,G28085T,C28603T,G29449A +England/CAMC-946506/2020|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A23063T (643) > C913T,C6636T,G21800T,C27972T,G28048T +AUS/VIC2173/2020|MT972184.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A23063T (643) > G10540A,C26984T,T28196C +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > T3127C +England/ALDP-94A63C/2020|20-06-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T10513C,T27851C,C29541T,C29739T (645) > A7291G,C7423T,C9979T,C26447T,C29077T +England/ALDP-52A636/2020|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T10513C,T27851C,C29541T,C29739T (645) > A2756G,C17550T +England/SHEF-D1CE6/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C16101T (646) > C5339T,A29571T,C29572T,G29573A +England/SHEF-C0F96/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C16101T (646) > G12514T,A18616G,C28256T,G29779C +England/QEUH-B10460/2020|20-11-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21302T,C21304A,G21305A,G28884T (647) > A15753G,A19655G,G27798T +Scotland/QEUH-96D5CD/2020|20-08-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C21302T,C21304A,G21305A,G28884T (647) > C4655T,G5305A,A5958G,C28887T +ZW-6983|LR963462.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > C10341T +ZW-6978|LR963455.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > A13833G +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C (649) > C28720T +England/MILK-1169960/2021|21-01-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C (649) > T4895C,C9072T,G20578A,G23948C,C24382T,G28209T,A28271G,C29769T +England/ALDP-952A44/2020|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5924A,T21775G (650) > G16852T,G18984T +England/QEUH-9B4A22/2020|20-09-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G5924A,T21775G (650) > G2885A,C15026T,G17427T,G19635T,C21846T +Netherlands/NA_359/2020|LR883961.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C13502T +Netherlands/NA_589/2020|LR883868.1|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C21588T,G25012T +England/CAMB-1AE7FF/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,G11842T (652) > C6033T +England/CAMB-762D2/2020|20-03-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,G11842T (652) > C14757T,G16072T,A19743C,C22498T +England/MILK-A06194/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T (656) > C12513T,T29059C +England/CAMC-B32AA2/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T (654) > T15933C,T16968G,T29784C (655) > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T (656) > G14528A,C16393T,T16695G,C24023T +Scotland/EDB2049/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > T25916C +Scotland/EDB2100/2020|20-04-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > A17521G,A22206G +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > T17208C +USA/WI-UW-269/2020|MT429191.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > A23588T,C27657T +Wales/PHWC-340A9/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > C10376T,G18583T,G29773T (71) > G7675T,G18318T,T21745C,C27610T +Wales/PHWC-1667A8/2020|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > C10376T,G18583T,G29773T (71) > C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C +England/CAMB-83FBD/2020|20-04-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > A3103C,C5893T,A28117T (72) > +England/CAMB-1AD004/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > G24368T (70) > A3103C,C5893T,A28117T (72) > A28356G +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > T15276A,G28842T (74) > G11417T,A15276T,G20679T,T21291C +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > T15276A,G28842T (74) > G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T +England/PHEC-14F5D8/2020|20-12-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A +USA/WA-S2992/2020|MW474166.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1990T,C2939T,A5264G,C16457T (87) > G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1990T,C2939T,A5264G,C16457T (87) > G596A,G1820A,G9526T,C14183T,C28344T +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T (88) > T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T (88) > +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > C4012T +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > C8109T +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > T12925C +USA/WI-UW-1126/2020|MT929103.1|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C715T,A23586G (101) > G487A,C4876T,A5877G,C18555T,A27489G,C28045T +USA/WI-UW-1071/2020|MT929023.1|20-07-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C715T,A23586G (101) > G1957T,C2623T,C13115T,G22026T +USA/VA-DCLS-0481/2020|MT951936.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T (102) > C799T,C6701T,C23604T +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T (102) > +KOR/YS006/2020|MW345824.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > C26261T +KOR/YS008/2020|MW345825.1|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28027T,G29742T (104) > C12754T,A14012T,G14250T,C22687T +USA/WA-S1037/2020|MT642186.1|20-05-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28027T,G29742T (104) > A18671C,C25466T +USA/AK-PHL660/2020|MW173157.1|20-06-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > A16872C +USA/MN-QDX-981/2020|MW065078.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > C3817T,A23813G +USA/VA-DCLS-1006/2020|MT952676.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > T18641C,C23208T,G25793T,C27807G +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G17590T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C15352T +USA/UT-00495/2020|MT444543.1|20-04-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > T11131A +USA/UT-02970/2020|MW053933.1|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C4878T,A22525G,C29272T,G29449T (119) > A22681C,G28202A +USA/UT-08378/2020|MW206039.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C4878T,A22525G,C29272T,G29449T (119) > C222T,A454G,C11750T,T17772C,G21099T,T29449G +USA/IL-UW-1064/2020|MT929016.1|20-07-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T (120) > +USA/VA-DCLS-1666/2020|MW280480.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T (120) > G7936A,A8040G,G29402T +Scotland/EDB3598/2020|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T (131) > G22244T,C26461T +Scotland/EDB2451/2020|20-04-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T (131) > T10963A +England/MILK-9934B2/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T (132) > C9246T,C11747T,C13378T,G19056T,C28744T +Switzerland/240029/2020|LR880608.1|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T (132) > T27622C +England/RAND-12B3F28/2021|21-02-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T (134) > +England/RAND-12B3CF4/2021|21-02-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T (134) > +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > T1171C,A5747G,C10789T,G17259T,G24007A (139) > C10228T,C13335T,T14408C,C25611T,G29705T +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > T1171C,A5747G,C10789T,G17259T,G24007A (139) > C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C6843T,T11764C,G29402T (140) > T21294C,G28936A,A29115T +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > C6843T,T11764C,G29402T (140) > C13176T,T17040C,C24106T +England/MILK-958598/2020|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > C4320T (144) > C5175T,A15283G,G16861T,C20844T,T27539C +England/ALDP-4F4092/2020|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > C4320T (144) > C1627T,C11494T,C14076T,T18309C,G20670A,C29529T +England/LIVE-A91F7/2020|20-03-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > T13006C (145) > C19186T +England/CAMB-1AE865/2020|20-04-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C25688T (143) > T13006C (145) > C1437T,A24070T,C26013T,C27945T +England/BRIS-12C762/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > G28808T,G29434C (159) > G10096A,G23755T,G24199T +England/BRIS-127AD7/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > G28808T,G29434C (159) > G3638T +BHR/600023154_S29/2020|MW237743.1|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T (194) > G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T (194) > C21310A +Scotland/QEUH-969725/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A (198) > C2135T,G23856T +England/QEUH-AD1648/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A (198) > C1514T,T6141A,C11490T,G13397T,C27577T +England/CAMC-A3E658/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C882T,C6990T (213) > T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T +England/MILK-A47DDF/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C882T,C6990T (213) > T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T +England/LOND-DC4E3/2020|20-11-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T (217) > A11923G,G19009T,C20233T,T21976C,C26645T +England/MILK-99D3AC/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T (217) > G6446T,C9811T,C21234A,C22713T,C29580T +IND/GBRC-366a/2020|MT951170.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G28851T (218) > C26058T +IND/GBRC-392b/2020|MT954593.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G28851T (218) > C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T +Switzerland/310517/2020|LR898824.1|20-10-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G5206T,C26885T,G28875T (219) > G370T,A8993G,C14763T,G25690A,C29370T +England/MILK-9AB1A1/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G5206T,C26885T,G28875T (219) > G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T +SAU/596/2020|MT755893.1|20-02-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > A23503G +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > G11417T,G28960T +England/ALDP-B75065/2020|20-11-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T181C,C8664T,C12525T,C15120T,G28975T (222) > G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A +Scotland/QEUH-AD4AFE/2020|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T181C,C8664T,C12525T,C15120T,G28975T (222) > A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T +SAU/578/2020|MT755891.1|20-02-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C27527T,C29421T +Scotland/EDB6640/2020|20-05-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T838C,G1729A,C1973T,C2919T,C23191T,T23605C +England/PHEC-1491AD/2020|20-10-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G4006T,T18877C,T25563G +England/TFCI-26FA9B7/2020|20-12-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > +England/MILK-B94ACC/2020|20-11-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > C15237T +England/MILK-EB78C6/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T (244) > C6310T,C10369T +England/CAMC-C44338/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T (244) > T1908C,C2947T,C17550T,C29509T +England/ALDP-EEACDD/2021|21-01-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C3811T,A6608G,A28911T (248) > C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T +England/LIVE-DDCD09/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C3811T,A6608G,A28911T (248) > A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T +England/MILK-ACEE55/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T2113C,G9190T,G28851C (261) > C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T +Switzerland/260079/2020|LR882418.1|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T2113C,G9190T,G28851C (261) > C842T,T1359C,C10702T,C11109T,C25886T,C27429T +Scotland/EDB6391/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T24923C (262) > C12194T,C13968T,C14189T +Scotland/EDB5108/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T24923C (262) > +USA/VA-DCLS-0489/2020|MT951943.1|20-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T5941C,A22438T (263) > G21600T,T27672C +USA/VA-DCLS-1388/2020|MW067734.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > T5941C,A22438T (263) > G1659A,A4838G,C5548T,C14220T,C14724T +Scotland/QEUH-961BB8/2020|20-08-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > C346T,A28959G (264) > C9430T,G23782T,A28336G +Switzerland/250091/2020|LR881897.1|20-08-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T (260) > C346T,A28959G (264) > G11521T,T16059C,C23896T,T25078C,T27919C +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T (286) > C16362T +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G19969A (285) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T (286) > G25775T +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > T2845C (294) > C6500T,C17125T,C21145T,C29708T +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > T2845C (294) > G9805T,G11273A,G17944T +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > G23522A (295) > C24106T,C25162A,C25163A,A26927G +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28854T (277) > G208T (293) > G23522A (295) > A25747C +Switzerland/300264/2020|LR898541.1|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > C2706T,C28703G (310) > C2470T,C4084T +England/QEUH-963433/2020|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > C28833T (308) > C25731T,G28703C (309) > C2706T,C28703G (310) > C5339T +Scotland/CVR2213/2020|20-04-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > C3411T,C3885T (339) > T3411C,A3413T,A5353G +Scotland/CVR1909/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > C3411T,C3885T (339) > C7279T,A14001G,C26801T +England/MILK-BB0022/2020|20-11-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C11050A (363) > +England/MILK-BB0031/2020|20-11-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C3426T,C19862T (362) > C11050A (363) > +England/QEUH-9B3A8D/2020|20-09-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T (375) > T11152C,T11824C +England/NORW-F1F9C/2020|20-10-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T (375) > C203T,C5183T,A8031G,C9207T,C25521T,G26690T +England/PHEC-14E15D/2020|20-12-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > C20178T +England/PHEC-149635/2020|20-10-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > +England/ALDP-A95DE1/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > C22088T,C29686T (383) > G21193T,G24794T,G25135T,G26801C,T26843C +England/ALDP-9E75E9/2020|20-09-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > C22088T,C29686T (383) > G2764T +England/MILK-AC7B0A/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > G27877T (384) > C7528T,G24098T,C28315T,G28939T +England/NOTT-11336A/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > A408G (382) > G27877T (384) > G713A,A21127G,T26163C +England/MILK-A799FE/2020|20-10-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > T29185A (387) > A2658G,C17004T,C17125T +England/CAMC-A417F5/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > T29185A (387) > T23062C,G27459T,G29755T +England/QEUH-AE2A48/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > C10626T (388) > C6114A,T17208C +England/ALDP-A68CF9/2020|20-10-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > C10626T (388) > G6476T +England/CAMB-1B6439/2020|20-09-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > G25440T,C27752T (389) > A10323G,C28310A +England/MILK-9F1898/2020|20-09-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G23311C (386) > G25440T,C27752T (389) > C5239T +England/MILK-A7CDC2/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G28321A (391) > G10996T,G24867T +England/CAMC-A5845E/2020|20-10-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G28321A (391) > C13009T,G17721T,G18462T,C21234T,G23675C +England/ALDP-AA10DA/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G21800T,A22053C (392) > T7549C,C9073T,G10870T +Wales/PHWC-4815AA/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > G22346T (390) > G21800T,A22053C (392) > C12049T +Northern_Ireland/NIRE-FB967/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G3242A,G8120C,C21646T,A24205T,G28083T (430) > C4927T,C15738T,C27527T +England/QEUH-7A4BBB/2020|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G3242A,G8120C,C21646T,A24205T,G28083T (430) > C2511T +USA/WA-S2264/2020|MT831437.1|20-06-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > T242G,C5020T +USA/WA-S1922/2020|MT831459.1|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > C12528A +England/CAMB-83FF9/2020|20-04-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G10262A,C22995T,A27669G (435) > C8290T,C12242T +England/CAMB-75895/2020|20-03-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G10262A,C22995T,A27669G (435) > C4965T,C8956T +USA/WA-S2012/2020|MT831128.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28256T,C29784T (436) > T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T +USA/WA-S1775/2020|MT834200.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28256T,C29784T (436) > G13513A +England/ALDP-B82A0D/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > C4456T +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > G8015A,C9803T,C25797T +England/LOND-D6EBE/2020|20-04-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A11839G (439) > C8293T,C16575T +England/SHEF-C88A2/2020|20-04-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A11839G (439) > T3037C,C5878T,C7735T,C10645T +USA/WA-S860/2020|MT642111.1|20-04-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A23756G (440) > C4886T,C16178T +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > A23756G (440) > T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C +England/QEUH-A0AFB4/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28905T (441) > G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C +England/ALDP-C48747/2020|20-12-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C28905T (441) > G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T +Switzerland/230051/2020|LR882355.1|20-08-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > T2537G,G12191T,T16479C (445) > T7396C,C14120T,G25471T +Wales/MILK-9C729D/2020|20-09-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > T2537G,G12191T,T16479C (445) > A6659G,C6883T,C13261T,C15774T +England/BRIS-12A70A/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > C25528T (446) > C21077T +England/CAMB-77F61/2020|20-04-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C6573T (444) > C25528T (446) > G22299A +England/QEUH-9AE4E1/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G (466) > C18267T,G29736T +England/MILK-A180DE/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G24781T,G29706T (465) > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G (466) > A4764G,C21952T,G26257A +England/MILK-99D597/2020|20-08-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > C6629T,C15720T,G27877T,G27996T,A29424T,G29688A +England/NORW-EE34B/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > G18315A +England/NORW-E8693/2020|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > C1348T,C3653T +Scotland/QEUH-96C6AD/2020|20-08-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C1471T (488) > C19524T,C20759T,G25088T,C26912T,C28292A,C29739T +Switzerland/270108/2020|LR882077.1|20-09-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C1471T (488) > G2782T,C15251A,C21034T,C21590T,G23302A +Northern_Ireland/NIRE-FBB52/2020|20-04-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C6114T +England/CAMB-81070/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C4698T +Scotland/CVR41/2020|20-03-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C823T +England/QEUH-962E81/2020|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G (528) > G24755T,A27973G +England/QEUH-96E605/2020|20-08-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G (528) > C2841T +England/QEUH-9F9265/2020|20-09-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G28396A (529) > C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T +England/QEUH-98EE43/2020|20-08-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G28396A (529) > C2453T,G22918T,G27708T +England/NORW-E8709/2020|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G1820A,C6541T (530) > A9737G,A29242G +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G1820A,C6541T (530) > A3740G,C12786T,C26333T +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G (531) > G28690T +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G (531) > G2534T,G9130A,G29422A +England/QEUH-9600C9/2020|20-08-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T +England/QEUH-9B92F8/2020|20-09-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > C245T,G3250T,C11020T,C11109T,G16377T,C27874T +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A8565C,A28847T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A11023G +England/CAMB-76490/2020|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C27128T (535) > G8171A,A16541G,A17730G +England/CAMB-7CBD1/2020|20-04-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C27128T (535) > G960T,G26589C +Japan/TKYE630414_2020/2020|LC593818.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C8917T,C18167T,G21518T,G28975T (536) > G27604A,C29679T +Japan/TKYE622411_2020/2020|LC593808.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C8917T,C18167T,G21518T,G28975T (536) > G29773T +England/MILK-A18C8F/2020|20-10-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T (537) > +England/ALDP-C3C1FD/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T (537) > C19264T,T22672C,A23869G,T28340C +Wales/PHWC-15E0B7/2020|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G22627A,G28628T (538) > C1063T,G16117T,C27849T +Wales/PHWC-30957/2020|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G22627A,G28628T (538) > T11654C +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G25563C,G28178T (539) > G20134T,C24621A,G28300T +LC573289.2|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G25563C,G28178T (539) > G2305T +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,C14724T,G24262T,G27703T (540) > G5015A +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,C14724T,G24262T,G27703T (540) > G4148T,G5015A,C13620T,G28166A +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T27645A,G27666A (541) > C5979T,G29648T +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T27645A,G27666A (541) > T14127C,T14745G,G19180T,G22154T +England/CAMB-74D5B/2020|20-03-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > G18898T (549) > G1323T,T18907G,C21772T +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > G18898T (549) > C823T,C1457T,G3304T,A20055G,C22208T,C29095T +Wales/PHWC-1645BF/2020|20-05-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > C22314T,T24796C (550) > C5192T,C12400T,C25710T,C28432T +Wales/PHWC-33C88/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G18907T (548) > C22314T,T24796C (550) > G6358A,A14328G,G29736A +England/MILK-ABBCCA/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > T3873C,G3880A (560) > A14144G,T20196C,C23536A +England/MILK-ACCF27/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > T3873C,G3880A (560) > C18131T,G26640T +Wales/PHWC-16578B/2020|20-06-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T5465C,G24102A (567) > A489G,G6387A,C19185T,A25800T,A25801T +Wales/PHWC-166104/2020|20-05-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T5465C,G24102A (567) > T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T +England/BRIS-125D67/2020|20-03-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G18859T (568) > C6347T +England/BRIS-12C841/2020|20-05-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G18859T (568) > A14691G,T19473C,T22325C +England/ALDP-94D8F7/2020|20-06-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > A9997C +England/NOTT-111BFB/2020|20-05-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > G26426A +England/MILK-8664D7/2020|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C29733T +England/MILK-993300/2020|20-08-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C8290T,C19367T,C23525T +USA/VA-DCLS-1073/2020|MT981458.1|20-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > T27846C,C29171T +USA/VA-DCLS-0120/2020|MT482111.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > C10818T,C21998T +Wales/PHWC-162751/2020|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > C6312A (577) > G18538T,A20136G +England/ALDP-497D12/2020|20-06-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > C6312A (577) > T3334A,A6375G,G24926T,C25665T +England/ALDP-9D9104/2020|20-09-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G (584) > C2462A,C10615T,G27047T +England/CAMC-A40F67/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G (584) > A12529G +Scotland/QEUH-A00DF0/2020|20-10-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G11230T,G11401T,T24088C (585) > A11546G,C29730G +England/ALDP-9CC5BD/2020|20-09-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G11230T,G11401T,T24088C (585) > C11224T,G28307C +England/QEUH-9B6EAC/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > A29700G +England/NORT-2A4CAE/2020|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > C27945T +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > A3801G,C26985T +Northern_Ireland/NIRE-FB369/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > G25456T +England/LEED-2AA4EC/2020|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C22326T,C27128T +England/LEED-2AA394/2020|20-03-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C20941T +England/BRIS-1854318/2020|20-04-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C4780T,G22468T +England/BRIS-12E6FA/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C14676T,C17119T +England/WSFT-25C13CB/2020|20-04-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > +England/PORT-2F5D9C/2020|20-06-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > A5277G +England/ALDP-5D52BE/2020|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > T28494C +England/ALDP-6FAF24/2020|20-06-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > C6633T,C19862T +England/MILK-B01F25/2020|20-10-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A15972G,C19718T,T28759C (601) > C1722T,T3843C,G4300T,A4819G,C10277T,C15720T,C16114T,C17172T,A25351T,C27612T,A29031T,C29555T +Switzerland/210050/2020|LR882268.1|20-07-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A15972G,C19718T,T28759C (601) > C203T,T3095C,C12880T,C23896T,C25831T,G28077T,C28603T +England/ALDP-691499/2020|20-07-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A23207G (602) > C8650T,A21177G,C28603T +England/ALDP-4A2BFC/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A23207G (602) > A20826G +England/ALDP-9B5BC4/2020|20-08-28 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G (603) > A9433T,G11837T,C18807T,C21595T,A22024C,C22096T,C25546T +England/ALDP-49F5B8/2020|20-05-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G (603) > T21368C +USA/WA-S2598/2020|MT831859.1|20-06-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T (610) > G29254T +USA/WA-S1840/2020|MT834024.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T (610) > T5335C,G14186A,C27059T +USA/WA-S1246/2020|MT821587.1|20-05-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,T25783C (611) > C10408T,T21802C,C26022T,C27059T +USA/WA-S820/2020|MT641503.1|20-04-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,T25783C (611) > G17261A +Netherlands/NA_436/2020|LR883367.1|20-04-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > C4824T +England/CAMC-B36516/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C2918T +England/CAMC-B362D3/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C29311T +England/MILK-B3A284/2020|20-11-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > C27046T +England/CAMC-B365AD/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > T19232C +AUS/VIC3114/2020|MT972550.1|20-07-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C7600T,G7798T,T23548C (622) > C24912T,T27484C +AUS/VIC9664/2020|MW156172.1|20-08-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C7600T,G7798T,T23548C (622) > C506T,G29072T +AUS/VIC13094/2020|MW185501.1|20-07-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > G6662A +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > G5572A,A6366T,G11410A,G25776T (626) > A4228G,A11410G,G23403A +Poland/1/2020|LR899030.1|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > G5572A,A6366T,G11410A,G25776T (626) > T241C,T9440G,G17964T,T19488C,G29747T +England/CAMC-947259/2020|20-07-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C (627) > +England/MILK-9927C9/2020|20-08-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C (627) > T595C,G2659T,G15773A,C21789T,G24197T,G26172T +USA/COVID20-0537/2020|MT981422.1|20-06-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > G12832T (57) > C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C8389T (54) > G27915A (55) > C601T (56) > G12832T (57) > A28165G +England/QEUH-CAF17D/2020|20-12-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > C9142T,C19524T +USA/COVID20-0777/2020|MW002812.1|20-06-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G (92) > G4285A,G6421C,C16173T +USA/VA-DCLS-1147/2020|MT992749.1|20-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G (92) > G22487C +USA/VA-DCLS-1512/2020|MW197472.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G25947C (93) > G526T,T6949C,C29366T,C29750T +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G25947C (93) > C23685T,G27703T +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T (94) > +ARG/Cordoba-891/2020|MW633900.1|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T (94) > A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C19145T (95) > G4285T,T5059C,C16230T,C23525T,G25471T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C19145T (95) > C5540A +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > T13914C (96) > C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > T13914C (96) > G3638A,C16217T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,G26828T (97) > C18693A +USA/1453xE2/2020|MW521402.1|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,G26828T (97) > G7042T,C11396A,C21855T,G28655T +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A9984C,G25445T (98) > A9935G,T16632C,C19185T,C28824T,G29628T +USA/WA-S2867/2020|MW173410.1|20-09-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A9984C,G25445T (98) > G9278A,G11693T,C14937T,C21017T,C21219T +England/MILK-6166F0/2020|20-07-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T (99) > T22912G +England/ALDP-9BCA93/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T (99) > C782T,G1210T,C28045T +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G26217T (100) > C21731T,G29645T +England/CAMC-947D3A/2020|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G26217T (100) > G105T,T10288C,C13821T,C26625T,A29752T +USA/WI-UW-1194/2020|MT981478.1|20-08-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > G9928T (110) > C10377T +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > G9928T (110) > A16148G,C16928T,G29422T +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > A22320G (112) > C3411T,G8114A,C11095T,G15908A +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > A22320G (112) > G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T +USA/UT-05592/2020|MW054143.1|20-06-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > G9705T (113) > A3121C,G23009T,G27637A,C29743T +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > T833C (111) > G9705T (113) > C8389T,T19839C,G25523T,T29685G +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G10902A (116) > C7173T,G11596T,C13994T,C25546T +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T (115) > G10902A (116) > G2659T,C3622T,G7936T,T9379A,A12148G,C18687T +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > G9738C,G13713A,C16394T (136) > A9492C,C21638T,C25919T +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > G9738C,G13713A,C16394T (136) > C11345T,C13860T +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T +England/ALDP-955F15/2020|20-06-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G28907T (196) > G25793A +England/MILK-9A6856/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G28907T (196) > T2533C,T3873G,A8031G,G23126T,C26340T +England/ALDP-94EB75/2020|20-06-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A (197) > +England/ALDP-6E2806/2020|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A (197) > T16456G,C27769G +England/MILK-5642D2/2020|20-06-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > C21614T (215) > T1834C,C11783A,C25413T +England/CAMB-1B3593/2020|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > C21614T (215) > A5829G,C6651T,C8326T,A11730G,T25732G +England/SHEF-CDD62/2020|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > T241C,A8821G,C15752T,T26066C (216) > C25665T,T28098C,G29254T +England/SHEF-10B22B9/2020|20-04-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > G24197T (214) > T241C,A8821G,C15752T,T26066C (216) > G3482A +Scotland/QEUH-A9E7BD/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > A3120C +Scotland/EDB7778/2020|20-09-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > C28045T +England/QEUH-9B703C/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C (232) > C25466A,C25614T,A29101G +England/MILK-970CE0/2020|20-08-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C (232) > G26389T +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > G25494T (233) > C1593T,C2940T,C10456T,G23611A +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > G25494T (233) > T15585A,C15613T,A24062G,T27484C +England/CAMC-1263B05/2021|21-02-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A (234) > G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A +England/QEUH-AD3822/2020|20-10-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A (234) > G2035T,A2805G,C18555T,C21365T +England/SHEF-10C9BD2/2020|20-12-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C (235) > C15081T,A19963G +England/SHEF-10CC3AA/2020|20-12-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C (235) > C1420T +England/MILK-9A94E6/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T (236) > C7764T,C27059T,G27806T,C28087T +England/MILK-566C5A/2020|20-06-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T (236) > +England/CAMC-C2CDFC/2020|20-12-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > T3366C +England/MILK-CAA0EE/2020|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > C28411T +England/MILK-A1BC04/2020|20-10-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G204T,T961C,G6288T,T9651G,T13880C,C16163T,A22992G,C27263T,C28975G,A29399G +England/QEUH-96A29C/2020|20-08-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > G21204T,G29692T (246) > C15654T +England/ALDP-9EA6D4/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > G21204T,G29692T (246) > C8240T,C8357T +England/MILK-A6AEC4/2020|20-10-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > C26534T (247) > C2910T,C16393T,A19387G,G20491A,C24378T +England/MILK-B889A0/2020|20-11-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C16915T,T24202C,G28899T (245) > C26534T (247) > A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T +England/MILK-ACC08E/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T +England/ALDP-9BE8B5/2020|20-09-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > T16242A (368) > G28745A +Scotland/EDB10724/2020|20-12-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > T16242A (368) > C2509T,C10615T,T12134C,C21365T,C22987T +Scotland/CVR4309/2020|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C7471T +England/QEUH-AE4EA4/2020|20-10-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > T14721C,T25519G (377) > C26894T,T28277C,A28612G +England/ALDP-9BECB9/2020|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > T14721C,T25519G (377) > C23029T +Wales/PHWC-16E6A3/2020|20-10-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > G6344T (378) > C3768T,C5031T,C18555T,T20976C +England/MILK-9A9D09/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > G6344T (378) > A1230G +England/QEUH-B6C0E9/2020|20-11-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > C66T,G10870T,A11781G,C25614T (379) > C5730T,C14318T,C23644T,C29739T +England/CAMC-AEA62E/2020|20-10-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > A1987G (376) > C66T,G10870T,A11781G,C25614T (379) > C18329T +Wales/PHWC-360A7/2020|20-04-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > G11801A (433) > T4330C,T24063C +Wales/PHWC-260AA/2020|20-03-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > G11801A (433) > T7168C +England/BRIS-185470D/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > +England/BRIS-12AF02/2020|20-05-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > G27670T +England/MILK-11A5634/2021|21-01-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > T25713C (438) > C683T,C11747T,G22022A,T24991A,T25039C +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T (437) > T25713C (438) > C5796T,C9360T +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C (443) > C22264T +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T (442) > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C (443) > T27824C +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C (478) > +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > A6319G,T26149C (477) > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C (478) > G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T +England/NORW-222D0F/2020|20-12-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T (480) > C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T +England/MILK-F72F49/2021|21-01-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T (480) > C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > T22020C,G23628T,C25728T,G26063T (481) > G2155T,C6541T,C10029T,C20844T,A24775C,G28914T +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C12053T (479) > T22020C,G23628T,C25728T,G26063T (481) > C6541T,C6606T,G11926A,G27933T,G27990A +England/CAMB-72B44/2020|20-03-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/CAMB-822D3/2020|20-04-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/ALDP-94DD07/2020|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2447T,G22199T (502) > G3164T,C7528T,G20569T,C29625T +England/ALDP-49EC3C/2020|20-05-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2447T,G22199T (502) > G29392T,C29541T +PER/covper024/2020|MW030255.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > C17436T,G27478T +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > A10323G,G27160T +PER/covper011/2020|MW030242.1|20-07-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > A21131G (504) > C3768T,C14265T,G17721T,C27213T,C27513T +PER/covper040/2020|MW030271.1|20-05-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > A21131G (504) > C12854T,G20752T +England/MILK-B1553B/2020|20-10-23 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C18747T (505) > C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A +England/MILK-66F889/2020|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C18747T (505) > G14547A,G14869A,A24879G,C29421T +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T (506) > A235C,T1921C,C22522T,C29259T +England/LOND-12F65DC/2021|21-01-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T (506) > G8591T,G15906T,A18594G,G23868T,G25906T,C26060T,G28079A,T28124C,T28723C,G29260T,G29543T +Switzerland/310500/2020|LR898805.1|20-10-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C (507) > C9286T,G18210T,C21306T,G28541T +Switzerland/300433/2020|LR898634.1|20-09-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C (507) > G27382T +England/QEUH-96BAA2/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T (508) > G1042T,C8895T,G25250T +Wales/ALDP-B19FFD/2020|20-11-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T (508) > G922T,T10369C,A23064C,G23608T,C28453T,C29642T +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T (509) > +PER/covper018/2020|MW030249.1|20-07-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T (509) > G3755T,G11552T,A28356G +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C2706T,G9968T,G16647T,T23480G (514) > +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C2706T,G9968T,G16647T,T23480G (514) > +England/MILK-9A699F/2020|20-09-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C1457T,G3286A,C8290T,C8626T,C9298T,C24378T,G26648A,C28657T +England/CAMC-C3E586/2020|20-12-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T (518) > C3736T,C6336T,G19735T,G23611T,C26735T,C26858T +England/CAMC-DE5550/2020|20-12-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T (518) > G6320T,C10582T,C12194T,C25603T +England/ALDP-A525BB/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G15438T,G25785T (523) > C1758T,G18337T,G24757T,G28903T,G29260T +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G15438T,G25785T (523) > C541T,C1528T,C2836T,C8905T,A23125T,G28851T +England/MILK-A45AF8/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G19480A (524) > G18985T,C21844T,T23084C,C25318T,G27358T +Scotland/QEUH-A613BF/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G4510A (522) > G19480A (524) > C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T +Switzerland/180039/2020|LR861669.1|20-07-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > C19763T (526) > C1912T,C10252T,C14178T +Switzerland/220022/2020|LR882244.1|20-07-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > C19763T (526) > C2062T,G6877T,T8082C,C13945T,C22687T +Japan/TKYE627000_2020/2020|LC593811.1|20-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > T4346C,C10376T,C14708T,C28725T,G29692T (527) > C7728T +Japan/TKYE624705_2020/2020|LC593810.1|20-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C9286T (525) > T4346C,C10376T,C14708T,C28725T,G29692T (527) > A158G,C706T,C5974T,A26459G +IND/GBRC455b/2020|MW600453.1|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T (533) > G160T,T313C +IND/GBRC455a/2020|MW600436.1|20-12-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5700A (532) > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T (533) > G160T +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C28969T +USA/WI-UW-114/2020|MT706234.1|20-03-30 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A14330G,A27989G +England/CAMC-947392/2020|20-07-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C7843T,G15438T,C25207T,C28453T (573) > T25949C +England/MILK-977469/2020|20-07-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29464C (571) > G26918T (572) > C7843T,G15438T,C25207T,C28453T (573) > C2536T,T7843C,C8318A,T26160C +AUS/VIC9179/2020|MW153248.1|20-08-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > C18555T,C22987T (624) > G1338C,C5691T,A11425T,C20089T +AUS/VIC11646/2020|MW155572.1|20-07-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > C18555T,C22987T (624) > G6617T +Scotland/EDB11343/2020|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > A2692T,C21614T,C26645T (77) > G9049T,C20405T,A25806G +Scotland/EDB11342/2020|20-12-26 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > A10323G (73) > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T (75) > A22206G (76) > A2692T,C21614T,C26645T (77) > A4459G,A18846G +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > C8947T,C12100T (138) > C1380T,C6539T,T7813C,A10417G,A19476G,C21638T,G22708T,G28628T,T29362C +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C1059T (61) > C28887T (133) > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T (135) > C2395T,T2597C,A12878G,T24349C,G27890T (137) > C8947T,C12100T (138) > C1601T,C4918T +England/CAMC-A65DDB/2020|20-10-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T (225) > T22918G +England/CAMC-AAF5A0/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T (225) > C4672T,C8605T,C11003T +England/MILK-A192C8/2020|20-10-01 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C (226) > A538G,A1098C,C2910T,G9092A +England/QEUH-9F3FDD/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C (226) > +England/MILK-ABBF2B/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > C7528T,C29555T (227) > C10474T,C13536T +England/QEUH-96A85E/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > C7528T,C29555T (227) > T23986C +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > C14724T +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > A6391G +England/PHEC-149F0D/2020|20-11-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T (230) > +England/MILK-BE717A/2020|20-11-29 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T (230) > C11003T,C26404T,G26754A +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T (231) > C9745T,C10440T +Scotland/QEUH-BEAF22/2020|20-12-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2836T,G21724T (229) > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T (231) > G4105T,C4754T,C5730T,C21597T,T21841A +England/MILK-A230C1/2020|20-10-03 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > A2175G +Scotland/QEUH-9696CE/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > C7844T,T24925C,C27920T (320) > C2644A,C5221T,C26985T +England/CAMC-B3582D/2020|20-11-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G18186T,C28854T (334) > A9859G,C14531T +England/MILK-A796E8/2020|20-10-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G18186T,C28854T (334) > G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T +Northern_Ireland/QEUH-969C53/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > C19545T,C26408T +England/ALDP-9E79B0/2020|20-09-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G18803T (338) > C5817T,T10321C,A10724G,C16469T,C21635T,G25320T +England/MILK-B561FE/2020|20-11-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G18803T (338) > C1288T,T16213C,A23631G,C26681T,G27882T +England/CAMC-9DFBC4/2020|20-09-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C6317T (370) > G9658T,T21841C +England/QEUH-AD1165/2020|20-10-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C6317T (370) > C4795T,T5471C,A21631T +England/ALDP-FB5E3E/2021|21-01-11 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G17944T,C24334T,T24814C,C27769T (371) > G1141A,T11522G,A13315G,C18744T,T21973C +England/ALDP-E8756E/2021|21-01-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G17944T,C24334T,T24814C,C27769T (371) > C12781T,G17632A,C28453T +England/ALDP-A2EAE6/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > T24769C,C25460T (372) > C337T,T21294A,G21295A,G21296A,A25008G +Scotland/QEUH-A636C3/2020|20-10-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > T24769C,C25460T (372) > C593T,T26903C,C26936T +England/QEUH-A76C07/2020|20-10-12 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > G21777A +England/MILK-AC7997/2020|20-10-21 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > C125T +Scotland/QEUH-9DC927/2020|20-09-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G8179T (374) > C4794T,T8179G,G23006A +Scotland/QEUH-9B75D3/2020|20-09-04 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > T445C,C6286T,G21255C,C22227T,C28932T,G29645T (360) > C26801G (361) > C27944T (366) > G204T (367) > C21614T (369) > G8179T (374) > G29778T +England/CAMC-AEACFF/2020|20-10-25 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C12249T (516) > C3141T,C4683T,C8683T,C17690T,T19935C,C24130T,A27979G +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,C29769T (545) > C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,C29769T (545) > T28360C +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G (546) > C14805T +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G (546) > C11750T,C18183T,C25731T +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > G26416T (547) > C2044T,C10626T,C11824T,A22052C,C26645T,C29555T +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > G26416T (547) > C1663T,G3155T,A4485G,C5493T,G14020T,C27431T +England/MILK-97356A/2020|20-08-14 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C15720T +England/MILK-9A9F7C/2020|20-08-31 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > C7844T,T24925C,C27920T (320) > C4893T,C29762T (321) > G19879A,C25433T +England/OXON-F42364/2020|20-12-18 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > C7844T,T24925C,C27920T (320) > C4893T,C29762T (321) > G1306T,G4510T,T8662C,C8733T,C18032T +England/MILK-9C2766/2020|20-09-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > G2072A,C27294T (337) > T22189C,G27382C,A27383T,T27384C +England/ALDP-A95A9F/2020|20-10-19 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > G1464A,A10978T,T20799C (335) > G5572T,G28375T (336) > G2072A,C27294T (337) > T14499C,C17118T,C23854T,A27865T,T27866A +England/PHEC-149FA3/2020|20-11-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C12249T (516) > G3431T,T25577C,C25626T,C27002T (517) > G3433A,G8084A,C11941T,C18555T,A26174C +England/QEUH-C9332B/2020|20-12-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G28882A,G28883C (426) > G28881A (427) > C3373A,C15960T (512) > T15960C (513) > G1820A,C6883T,G21724A,G28003C (515) > C12249T (516) > G3431T,T25577C,C25626T,C27002T (517) > G9314A,C13605T,G14490A +England/CAMC-A649C9/2020|20-10-10 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C556T,C23525T (242) > C6813T,C13620T +England/MILK-B04890/2020|20-10-24 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (238) > G13993T (239) > G5629T (240) > (241) > C556T,C23525T (242) > G8371A,C23679T +England/CAMC-A57F03/2020|20-10-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > C25386T (324) > T505C,A2419G,G17058T +England/MILK-A7D15C/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > C25386T (324) > C21302T,C21304A,C26256T,C27119T,C28453T +Wales/PHWC-47F3A5/2020|20-10-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > G28817T (325) > T9655C,G28198T +England/ALDP-A85BCC/2020|20-10-17 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > G25494T (323) > G28817T (325) > T209C,T11857C +England/ALDP-A2FCA3/2020|20-10-05 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > T7919G (327) > C24734T +Scotland/MILK-A69E6B/2020|20-10-09 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > T7919G (327) > A28483G,A28877G +England/MILK-A7D1A7/2020|20-10-13 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > G18583A (328) > T4579A,T27835C +England/MILK-A91486/2020|20-10-16 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C20451T,G21770A (326) > G18583A (328) > G2272T,G20679T,G24586T +AUT/2021006354/2021|MW672357.1|21-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C829T,C14697T,C18176T,G19398T,G28083T,G28975T (333) > C878T,C12374T,C20384T,C21639T,C29367T +England/MILK-E7F4C6/2021|21-01-02 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C829T,C14697T,C18176T,G19398T,G28083T,G28975T (333) > T9070C,C10296T +England/ALDP-AA169C/2020|20-10-22 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > G25218T (331) > C23191T,G23909A +England/MILK-A474DA/2020|20-10-06 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > G25218T (331) > A6659G +England/ALDP-B483EA/2020|20-11-07 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > T8110C (332) > C10039A,T18402C,C29738T +England/QEUH-AA0035/2020|20-10-20 (1) > C241T (25) > C14408T (26) > A23403G (27) > C3037T (28) > A20268G (275) > G29734C (316) > C17104T (317) > T7767C,C8047T,C22879A (318) > C27800A (319) > G12988T,G15598A,G18028T,T24910C,T26972C (322) > C16394T,C22127T,G23876A,G25947T (329) > C29274T (330) > T8110C (332) > G11417T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_17_sample_names.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1234 @@ +England/BRIS-1853249/2020|20-04-02 +NPL/61-TW/2020|MT072688.1|20-01-13 +Wales/PHWC-25B04/2020|20-03-24 +Wales/LIVE-A6831/2020|20-03-16 +Scotland/EDB1317/2020|20-04-09 +Scotland/EDB354/2020|20-03-30 +England/SHEF-BFF8B/2020|20-03-25 +England/SHEF-BFFC7/2020|20-03-25 +England/PHEC-1E01E/2020|20-04-03 +DP0476/2020|LC571003.1|20-02-16 +DP0191/2020|LC570980.1|20-02-15 +England/EXET-135818/2020|20-04-11 +England/LIVE-A5D06/2020|20-03-17 +England/LIVE-A065B/2020|20-05-27 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 +Scotland/GCVR-171160/2020|20-03-26 +England/BRIS-130E2A/2020|20-03-24 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 +NED/NB02_13KS/2020|MT457397.1|20-04-29 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 +England/BRIS-1258A2/2020|20-03-29 +England/SHEF-BFEBB/2020|20-03-24 +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 +USA/DC-HP00063/2020|MT646075.1|20-03-13 +HKG/HKU-904a/2020|MT365032.1|20-01-30 +England/LIVE-9E66F/2020|20-04-10 +Scotland/CVR705/2020|20-03-26 +England/PHEC-1A601/2020|20-03-04 +England/PHEC-2275E/2020|20-06-22 +England/LIVE-A4C46/2020|20-03-12 +Scotland/EDB046/2020|20-03-15 +England/BRIS-12EEB6/2020|20-04-22 +Scotland/EDB199/2020|20-03-26 +England/CAMB-74A09/2020|20-03-18 +England/ALDP-9EE3AC/2020|20-05-06 +England/CAMB-8042A/2020|20-04-10 +England/CAMB-737B8/2020|20-03-30 +USA/WA-S885/2020|MT642386.1|20-04-22 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 +USA/WA3-UW1/2020|MT163716.1|20-02-27 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 +England/BRIS-1265AA/2020|20-04-10 +AUS/NT38/2020|MT641726.1|20 +France/40002VJ/2020|MT470179.1|20-03 +England/CAMB-7772D/2020|20-03-31 +England/BRIS-12208F/2020|20-03-21 +England/ALDP-52C0FA/2020|20-06-01 +England/LIVE-9D7D6/2020|20-04-15 +USA/WI-UW-298/2020|MT706406.1|20-04-13 +USA/WI-UW-314/2020|MT706422.1|20-04-16 +USA/WI-UW-325/2020|MT706432.1|20-04-24 +USA/WI-UW-290/2020|MT706398.1|20-04-08 +Scotland/CVR3488/2020|20-05-12 +Scotland/CVR780/2020|20-03-27 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 +Japan/TKYE64688_2020/2020|LC581375.1|20-03 +MYS/188407/2020|MT372480.1|20-03-18 +AUS/VIC961/2020|MT451653.1|20-03-27 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +USA/COVID20-0008/2020|MT764174.1|20-03-10 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 +AUS/VIC1255/2020|MT451830.1|20-04-11 +AUS/VIC1878/2020|MT745600.1|20-03-29 +England/LCST-24D7202/2020|20-06-22 +England/SHEF-BFF21/2020|20-03-25 +Switzerland/100159/2020|LR884273.1|20-03-16 +England/LOND-126031F/2020|20-03-15 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +Wales/PHWC-285F4/2020|20-04-01 +England/BRIS-130965/2020|20-04-13 +Scotland/CVR44/2020|20-03-13 +Scotland/CVR839/2020|20-03-27 +Scotland/GCVR-170107/2020|20-03-23 +Scotland/CVR207/2020|20-03-18 +England/NORT-284A9B/2020|20-03-25 +Scotland/CVR10/2020|20-03-10 +Wales/PHWC-310CA/2020|20-04-11 +Wales/PHWC-31CB7/2020|20-04-14 +Wales/PHWC-26D2B/2020|20-03-30 +Spain/H12_46/2020|LR884009.1|20-04-08 +Spain/R11/2020|LR884126.1|20-03-06 +Spain/LP19_4952/2020|LR884066.1|20-03-07 +Spain/R10_33/2020|LR884127.1|20-03-02 +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 +England/CAMC-C91F38/2020|20-12-11 +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 +Scotland/EDB5629/2020|20-03-24 +Scotland/EDB5040/2020|20-04-02 +Scotland/EDB1824/2020|20-04-16 +England/ALDP-CB55B4/2020|20-12-20 +England/CAMC-CF4B5D/2020|20-12-21 +USA/WI-UW-06/2020|MT772088.1|20-03-21 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 +GHA/34927_S20/2020|MT890226.1|20-05-23 +GHA/35563_S37/2020|MT890230.1|20-05-24 +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 +England/BRIS-123965/2020|20-04-07 +England/BRIS-125347/2020|20-03-27 +IND/Isolate_9088/2020|MW555597.1|20-06-30 +IND/763/2020|MT577009.1|20 +England/CAMB-75BD8/2020|20-03-29 +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 +England/ALDP-9ED9F6/2020|20-05-05 +England/ALDP-944BD9/2020|20-06-07 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 +USA/WA-S3017/2020|MW474188.1|20-08-15 +USA/WA-S2852/2020|MW079820.1|20-09-01 +USA/WI-UW-26/2020|MT706147.1|20-03-24 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 +USA/WI-UW-558/2020|MT750137.1|20-06-25 +AUS/VIC2260/2020|MT972173.1|20-06-22 +England/EXET-1358BE/2020|20-04-15 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 +USA/WI-UW-1105/2020|MT929055.1|20-07-24 +USA/RML-22/2020|MW221270.1|20-08-30 +England/MILK-9750EF/2020|20-08-21 +BHR/740704818/2021|MW661071.1|21-01-26 +England/QEUH-E93C6A/2021|21-01-04 +Scotland/CVR2931/2020|20-04-22 +Scotland/GCVR-172150/2020|20-03-30 +England/BRIS-124885/2020|20-03-24 +England/BRIS-122C4F/2020|20-04-02 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 +Switzerland/100198/2020|LR884312.1|20-03-17 +England/NOTT-10E1B3/2020|20-03-19 +USA/WI-UW-37/2020|MT706158.1|20-03-22 +Scotland/CVR2927/2020|20-04-22 +Scotland/GCVR-173C30/2020|20-04-07 +England/ALDP-A6CC8C/2020|20-10-14 +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 +Switzerland/140091/2020|LR824563.1|20-04-18 +England/ALDP-49A5AE/2020|20-06-13 +England/ALDP-4A2A77/2020|20-05-22 +England/BRIS-12755E/2020|20-04-22 +England/BRIS-12468B/2020|20-04-09 +England/NORW-E9DF7/2020|20-05-02 +Scotland/EDB156/2020|20-03-23 +Wales/PHWC-27B20/2020|20-03-30 +Wales/PHWC-2624A/2020|20-03-27 +USA/UT-08320/2020|MW206019.1|20-05-15 +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 +Wales/PHWC-2BF8A/2020|20-04-02 +Wales/PHWC-29E43/2020|20-04-04 +England/LOND-D3534/2020|20-03-27 +England/PHEC-20C24/2020|20-04-21 +England/CAMB-7D2EA/2020|20-04-06 +England/LIVE-A63E5/2020|20-03-18 +Wales/PHWC-260C8/2020|20-03-26 +England/BRIS-12F969/2020|20-03-30 +England/PHEC-2083F/2020|20-04-13 +Wales/PHWC-16C6F0/2020|20-06-09 +England/QEUH-B2DD0B/2020|20-11-03 +England/MILK-A7B0BB/2020|20-10-14 +Wales/PHWC-27461/2020|20-03-31 +Wales/PHWC-29F13/2020|20-04-01 +AUS/VIC989/2020|MT451674.1|20-03-31 +AUS/VIC1056/2020|MT451723.1|20-04-03 +England/LIVE-A65EF/2020|20-03-19 +Wales/PHWC-2B7CE/2020|20-04-12 +IND/GBRC238b/2020|MT676367.1|20-06-12 +IND/GBRC209a/2020|MT664202.1|20-06-11 +Scotland/GCVR-1725BE/2020|20-04-04 +Scotland/CVR30/2020|20-03-13 +IND/GBRC99/2020|MT509504.1|20-05-06 +IND/GBRC31/2020|MT467247.1|20-04-29 +AUS/VIC1239/2020|MT451821.1|20-04-02 +AUS/VIC1282/2020|MW153048.1|20-04-08 +IND/GBRC128/2020|MT539172.1|20-05-02 +IND/GBRC123/2020|MT539176.1|20-05-02 +POL/PL_MCB_32/2020|MW273814.1|20-04-22 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +England/CAMB-7BED9/2020|20-04-04 +Netherlands/NA_302/2020|LR878041.1|20-04-01 +England/NORT-289814/2020|20-04-01 +England/ALDP-9ED57A/2020|20-05-08 +USA/WI-UW-1385/2020|MW035549.1|20-09-06 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 +Scotland/CVR129/2020|20-03-13 +Scotland/CVR52/2020|20-03-14 +England/ALDP-94D8D9/2020|20-06-20 +England/ALDP-9442D4/2020|20-06-07 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 +England/ALDP-BCA4B0/2020|20-11-23 +England/ALDP-119985B/2021|21-01-27 +USA/WA-S1222/2020|MT821613.1|20-05-08 +USA/WA-S1655/2020|MT834136.1|20-05-29 +USA/FHCRC-19442/2020|MW593677.1|20-07-30 +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 +USA/WA-S4100/2021|MW555971.1|21-01-18 +USA/WA-S4074/2021|MW555949.1|21-01-19 +England/CAMB-76515/2020|20-03-29 +England/CAMB-1AE294/2020|20-04-27 +England/LEED-2A8D10/2020|20-03-31 +England/CAMB-1AC6F4/2020|20-04-21 +England/CAMB-7EBDF/2020|20-04-07 +Scotland/CVR2381/2020|20-04-13 +Scotland/CVR2197/2020|20-04-11 +Scotland/CVR3417/2020|20-05-07 +Scotland/CVR1519/2020|20-04-03 +England/MILK-93B73B/2020|20-06-21 +England/MILK-9589F6/2020|20-06-15 +England/BRIS-128441/2020|20-04-16 +England/CAMB-7C39D/2020|20-04-13 +England/NORW-E8C37/2020|20-04-13 +England/NORW-E75A6/2020|20-05-04 +Wales/PHWC-3122E/2020|20-04-10 +Wales/PHWC-1645EC/2020|20-05-10 +England/ALDP-50085E/2020|20-06-27 +England/PHEC-127E8/2020|20-03-28 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 +England/MILK-9A8AB8/2020|20-08-31 +England/CAMC-106415F/2021|21-01-15 +England/CAMC-C470F2/2020|20-12-10 +USA/WI-UW-1046/2020|MT928999.1|20-07-29 +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 +Scotland/CVR3054/2020|20-04-24 +England/MILK-95698F/2020|20-06-06 +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 +USA/AK-PHL414/2020|MT946886.1|20-06-03 +USA/AK-PHL689/2020|MW173160.1|20-06-29 +England/MILK-974596/2020|20-08-17 +England/NORW-ECD21/2020|20-05-29 +England/NORW-E755B/2020|20-05-04 +England/MILK-978626/2020|20-07-30 +England/MILK-9A565D/2020|20-09-03 +USA/NM-QDX-264/2020|MT806796.1|20-04-30 +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 +Scotland/EDB1198/2020|20-04-08 +England/PHEC-20A84/2020|20-04-20 +Scotland/EDB6324/2020|20-06-01 +Scotland/EDB4579/2020|20-05-06 +Wales/PHWC-360E3/2020|20-04-26 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 +Netherlands/NA_289/2020|LR878031.1|20-03-31 +France/10065EE/2020|MT470176.1|20-03 +IND/nimh-19510/2020|MW181843.1|20-05-16 +IND/GBRC174b/2020|MT607610.1|20-06-05 +France/10036BG/2020|MT470106.1|20-03 +IHUCOVID-0033|LR794417.1|? +England/PORT-2D0D4C/2020|20-04-27 +Switzerland/100210/2020|LR884314.1|20-03-18 +POL/PL_MCB_72/2020|MW273854.1|20-05-10 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 +Scotland/CVR3629/2020|20-05-24 +Scotland/QEUH-5456F9/2020|20-05-13 +England/QEUH-9CE80D/2020|20-09-17 +England/QEUH-990752/2020|20-08-29 +AUS/VIC38/2020|MT450953.1|20-03-11 +IHUCOVID-0133|LR794459.1|? +England/PHEC-1555C0/2021|21-01-16 +England/MILK-E6578E/2020|20-12-30 +England/CAMC-106052A/2021|21-01-16 +England/LOND-12F6633/2020|20-12-15 +Switzerland/240009/2020|LR880588.1|20-08-07 +Switzerland/240084/2020|LR880634.1|20-08-12 +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 +Switzerland/101166/2020|LR824397.1|20-03-31 +Switzerland/100154/2020|LR824311.1|20-03-16 +PER/covper020/2020|MW030251.1|20-07-03 +PER/covper091/2020|MW030227.1|20-03-17 +England/CAMB-737D6/2020|20-03-31 +England/CAMB-1B08D9/2020|20-05-04 +Wales/PHWC-16930B/2020|20-04-01 +Wales/PHWC-34285/2020|20-04-14 +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 +England/BRIS-12B2BD/2020|20-05-02 +England/BRIS-128DCE/2020|20-04-14 +England/CAMC-947875/2020|20-07-13 +Spain/R60/2020|LR884131.1|20-04-17 +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 +Scotland/CVR3062/2020|20-04-24 +Scotland/CVR2435/2020|20-04-14 +England/OXON-B0922/2020|20-03-28 +AUS/VIC995/2020|MT451680.1|20-03-31 +England/CAMB-1AC7D3/2020|20-04-22 +England/MILK-BB0F16/2020|20-11-17 +England/CAMC-BBDD4C/2020|20-11-22 +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 +England/LEED-2A91D7/2020|20-04-06 +England/LEED-2A87C7/2020|20-04-03 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +USA/WA-UW-4105/2020|MT358746.1|20-03-31 +USA/WA-UW-2220/2020|MT345839.1|20-03-23 +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 +England/CAMB-7A7DF/2020|20-04-02 +Netherlands/NA_18/2020|LR878352.1|20-03-09 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 +England/LIVE-DAB556/2020|20-10-18 +England/PHEC-14DE93/2020|20-11-11 +Wales/PHWC-1658A6/2020|20-05-19 +Wales/PHWC-2E0A2/2020|20-04-10 +England/ALDP-952A53/2020|20-06-13 +England/ALDP-95A745/2020|20-06-13 +Scotland/EDB3137/2020|20-04-06 +Scotland/EDB2810/2020|20-03-30 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 +USA/UT-02231/2020|MT444626.1|20-04-15 +USA/WA-S2850/2020|MW079819.1|20-09-01 +USA/WA-S2746/2020|MT947577.1|20-07-19 +USA/WI-UW-879/2020|MT846567.1|20-07-14 +USA/UT-05590/2020|MW084605.1|20-06-01 +Netherlands/NA_588/2020|LR883860.1|20 +Netherlands/NA_583/2020|LR883819.1|20 +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 +England/CAMB-7771E/2020|20-03-30 +England/CAMB-7DC91/2020|20-04-05 +USA/WI-UW-1092/2020|MT929042.1|20-07-27 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 +USA/WA-S1266/2020|MT821676.1|20-05-13 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 +USA/IL-UW-385/2020|MT772536.1|20-05-23 +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 +USA/UT-03041/2020|MW053962.1|20-05-01 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 +USA/WA-S2725/2020|MT947550.1|20-07-07 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 +USA/WI-UW-994/2020|MT846680.1|20-07-20 +England/BRIS-128CA3/2020|20-04-14 +England/BRIS-12B1CF/2020|20-05-15 +USA/WI-UW-491/2020|MT750074.1|20-06-11 +USA/WI-UW-522/2020|MT750102.1|20-06-24 +USA/DC-HP00089/2020|MT509482.1|20-03-31 +USA/UT-03817/2020|MT873871.1|20-04-03 +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 +England/BRIS-12D9F2/2020|20-05-06 +England/BRIS-12B156/2020|20-05-08 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 +AUS/VIC1161/2020|MT451779.1|20-04-09 +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 +England/OXON-B15A5/2020|20-04-29 +England/BRIS-129D72/2020|20-04-15 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 +USA/VA-DCLS-1282/2020|MW067700.1|20-08 +USA/COVID20-1144/2020|MW067817.1|20-07-10 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 +Wales/PHWC-1662B6/2020|20-06-13 +Wales/PHWC-26B12/2020|20-03-29 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 +England/BRIS-12BF3E/2020|20-05-09 +England/BRIS-12DF1E/2020|20-06-04 +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 +USA/VA-DCLS-1517/2020|MW197475.1|20-07 +USA/WI-UW-1268/2020|MW035438.1|20-08-25 +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 +Scotland/EDB6146/2020|20-05-14 +Scotland/EDB6052/2020|20-05-08 +England/CAMB-7FBCF/2020|20-04-16 +England/CAMB-784BC/2020|20-04-06 +England/PHEC-15A73/2020|20-03-29 +USA/CA-QDX-796/2020|MW064788.1|20-03-23 +B90|LR898037.1|? +O9|LR963074.1|? +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 +USA/WI-UW-738/2020|MT772509.1|20-06-30 +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 +England/CAMC-946515/2020|20-07-15 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 +USA/WI-UW-249/2020|MT706376.1|20-03-16 +USA/WI-UW-84/2020|MT706205.1|20-03-24 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 +England/PHEC-1C872/2020|20-04-16 +England/BRIS-130015/2020|20-04-11 +USA/UT-04888/2020|MW084559.1|20-05-26 +USA/UT-04282/2020|MW084509.1|20-05-14 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 +Wales/PHWC-15DFD9/2020|20-05-14 +Wales/PHWC-2AF12/2020|20-04-06 +England/CAMC-B533A0/2020|20-11-08 +England/MILK-9781E9/2020|20-07-29 +321398|LR962930.1|20-10-13 +England/QEUH-B8053B/2020|20-11-14 +IHUCOVID-0441|LR794655.1|? +IHUCOVID-0428|LR794641.1|? +USA/WA-S4490/2021|MW648014.1|21-01-21 +USA/WA-S3458/2020|MW494078.1|20-12-07 +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +USA/VA-DCLS-0229/2020|MT558657.1|20-04 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 +Scotland/CVR3970/2020|20-08-22 +England/MILK-A7D5AB/2020|20-10-13 +USA/UT-01683/2020|MT536956.1|20-04-13 +USA/UT-03892/2020|MT711875.1|20-04-13 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 +USA/WA-S1281/2020|MT821642.1|20-05-12 +USA/WA-S2367/2020|MT831837.1|20-06-11 +USA/VA-DCLS-0804/2020|MT925987.1|20-07 +USA/VA-DCLS-1454/2020|MW067779.1|20-08 +England/NORW-E7EBA/2020|20-05-06 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 +USA/WI-UW-413/2020|MT772562.1|20-04-07 +USA/WI-UW-288/2020|MT706396.1|20-04-08 +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 +England/MILK-99DB3B/2020|20-08-31 +England/ALDP-5D3DEC/2020|20-06-19 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 +England/MILK-9C3D45/2020|20-09-09 +England/QEUH-9C7EA8/2020|20-09-11 +Scotland/EDB3341/2020|20-04-08 +Scotland/EDB6880/2020|20-04-30 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 +England/ALDP-B252AA/2020|20-11-04 +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 +England/LOND-D5444/2020|20-04-15 +Scotland/CVR3238/2020|20-04-26 +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 +Scotland/EDB3662/2020|20-04-28 +England/ALDP-6FB8FB/2020|20-06-29 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 +England/LIVE-A00F3/2020|20-06-04 +England/QEUH-544733/2020|20-05-14 +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 +England/MILK-654007/2020|20-07-04 +England/OXON-B1781/2020|20-05-04 +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 +Switzerland/220021/2020|LR882232.1|20-07-27 +England/QEUH-96E08F/2020|20-08-18 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +England/MILK-977645/2020|20-07-24 +England/CAMC-B325A1/2020|20-11-05 +England/CAMC-B34141/2020|20-11-05 +England/MILK-A795AF/2020|20-10-14 +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 +England/PHEC-14F392/2020|20-12-24 +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 +USA/WA-S2808/2020|MW077495.1|20-08-31 +England/CAMC-94C02D/2020|20-07-15 +England/MILK-95DBDD/2020|20-06-20 +England/CAMB-79ECC/2020|20-04-01 +England/PHEC-224A2/2020|20-06-08 +Switzerland/310363/2020|LR898676.1|20-10-07 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 +England/PHEC-152C73/2020|20-11-16 +Scotland/QEUH-96B4E0/2020|20-08-17 +England/MILK-9AA782/2020|20-08-31 +Scotland/QEUH-9D11C0/2020|20-09-16 +England/QEUH-A0077A/2020|20-10-02 +England/ALDP-AA0ED1/2020|20-10-22 +England/QEUH-A4CF6B/2020|20-10-05 +Switzerland/270068/2020|LR882987.1|20-09-02 +Switzerland/332169/2020|LR898966.1|20-10-22 +England/MILK-ABB8D5/2020|20-10-21 +England/NORT-2884A8/2020|20-11-22 +England/QEUH-AD0DDB/2020|20-10-26 +Wales/MILK-9E3240/2020|20-09-21 +GRC/202_32984/2020|MT459870.1|20-03-12 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/PORT-2D3B4F/2020|20-04-18 +England/EXET-136EE8/2020|20-04-20 +England/PHEC-215FB/2020|20-04-29 +England/PHEC-1B7C1/2020|20-04-08 +Switzerland/120182/2020|LR860799.1|20-04-27 +England/ALDP-9545BA/2020|20-06-17 +England/ALDP-651C9D/2020|20-07-04 +Scotland/CVR3919/2020|20-06-21 +England/ALDP-9558ED/2020|20-06-12 +England/NORT-286255/2020|20-09-16 +England/BRIS-12F78D/2020|20-03-10 +Switzerland/100802/2020|LR824314.1|20-03-25 +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 +PHL/UPMNIH_C1/2020|MW243995.1|20-07 +PHL/COVID-6009/2020|MT919790.1|20-07-18 +England/PHEC-20E4C/2020|20-04-16 +England/NORT-283B7B/2020|20-04-02 +England/ALDP-95665B/2020|20-06-08 +England/CAMB-7767B/2020|20-03-31 +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 +England/MILK-A79D10/2020|20-10-15 +England/PHEC-148F95/2020|20-10-15 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 +USA/VA-DCLS-1485/2020|MW205988.1|20-07 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +Switzerland/250060/2020|LR881882.1|20-08-18 +England/QEUH-A77F0D/2020|20-10-12 +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 +England/OXON-AEBC7/2020|20-04-12 +England/QEUH-96E27A/2020|20-08-20 +England/MILK-74C001/2020|20-06-29 +England/LOND-D4C6B/2020|20-04-15 +Wales/PHWC-164485/2020|20-05-02 +England/ALDP-5C701F/2020|20-06-19 +England/ALDP-51F142/2020|20-06-02 +England/ALDP-955FAC/2020|20-06-08 +England/ALDP-49E391/2020|20-05-20 +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 +England/LOND-126DFA5/2020|20-12-27 +Wales/PHWC-4846A4/2020|20-10-24 +Northern_Ireland/NIRE-10677D/2020|20-05-14 +Northern_Ireland/NIRE-106740/2020|20-05-14 +England/SHEF-C9FBB/2020|20-04-11 +England/LOND-D6531/2020|20-04-22 +England/MILK-9705F4/2020|20-08-18 +England/ALDP-9B6440/2020|20-08-28 +Scotland/EDB6515/2020|20-06-15 +England/QEUH-AD487C/2020|20-10-26 +England/QEUH-9B7B2C/2020|20-09-03 +Switzerland/250070/2020|LR881870.1|20-08-18 +England/QEUH-9B5344/2020|20-09-02 +England/ALDP-6839B9/2020|20-07-02 +England/ALDP-6BAB59/2020|20-06-29 +FRA/Env-Di/2020|MT709105.1|20-05-14 +AUS/VIC1786/2020|MT612326.1|20-05-27 +England/CAMB-7620F/2020|20-03-30 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 +England/PHEC-1DF03/2020|20-04-08 +England/CAMB-1AB21F/2020|20-04-18 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 +England/QEUH-9DE381/2020|20-09-21 +England/QEUH-95E7D8/2020|20-08-06 +England/NOTT-111E3E/2020|20-06-10 +England/NOTT-111117/2020|20-05-03 +England/ALDP-68EFBC/2020|20-07-02 +England/ALDP-91F278/2020|20-06-23 +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 +USA/WI-UW-1202/2020|MW035373.1|20-08-06 +England/PHEC-16F19/2020|20-03-31 +England/GSTT-265D4DF/2020|20-03-19 +England/LIVE-A2765/2020|20-05-20 +England/ALDP-658C87/2020|20-07-03 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 +England/NORT-283BE4/2020|20-04-03 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +England/BRIS-123EDF/2020|20-04-08 +England/BRIS-123F09/2020|20-04-08 +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 +England/ALDP-9ECEAD/2020|20-05-05 +England/BRIS-12DC53/2020|20-05-02 +Scotland/QEUH-7B078B/2020|20-07-19 +England/MILK-993EA5/2020|20-08-22 +England/BRIS-124C89/2020|20-03-26 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 +England/LOND-D53CF/2020|20-04-15 +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +Scotland/EDB5196/2020|20-05-18 +Scotland/CVR3185/2020|20-04-28 +England/BRIS-127363/2020|20-04-24 +England/BRIS-127A40/2020|20-04-17 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 +England/MILK-99DE32/2020|20-08-31 +England/CAMB-83A9E/2020|20-04-15 +England/EXET-136ED9/2020|20-04-22 +England/ALDP-955D39/2020|20-06-12 +Switzerland/300258/2020|LR898536.1|20-10-01 +England/SHEF-D1D3E/2020|20-04-22 +England/SHEF-CBE43/2020|20-04-26 +England/CAMC-949688/2020|20-07-27 +England/SHEF-C3AED/2020|20-07-30 +England/ALDP-90D6AE/2020|20-06-24 +POL/PL_P12/2020|MT511068.1|20-03-31 +England/QEUH-99923A/2020|20-08-24 +England/MILK-825C54/2020|20-07-16 +England/MILK-9E2BDD/2020|20-09-20 +Northern_Ireland/NIRE-1088C3/2020|20-09-13 +England/MILK-99D755/2020|20-08-31 +England/MILK-99D764/2020|20-08-31 +England/ALDP-907D09/2020|20-06-22 +England/MILK-85E3E4/2020|20-07-18 +England/MILK-95862C/2020|20-06-11 +England/ALDP-94EF88/2020|20-06-16 +England/PHEC-219E0/2020|20-05-01 +England/LEED-2AA59E/2020|20-04-06 +England/ALDP-95A754/2020|20-06-13 +England/ALDP-95CEA8/2020|20-06-15 +England/MILK-629D13/2020|20-07-05 +England/PORT-2F5752/2020|20-10-13 +England/QEUH-96A4C3/2020|20-08-13 +England/SHEF-C13B7/2020|20-05-19 +England/SHEF-10B2E79/2020|20-05-16 +England/OXON-AEF9E/2020|20-04-07 +Wales/PHWC-162E7A/2020|20-05-19 +USA/WI-UW-982/2020|MT846668.1|20-07-21 +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 +USA/FL-QDX-228/2020|MT806770.1|20-04-18 +USA/VA-DCLS-0920/2020|MT929088.1|20-05 +England/ALDP-71D072/2020|20-07-01 +England/MILK-9573DB/2020|20-06-10 +England/ALDP-954C6A/2020|20-06-13 +England/ALDP-A524EB/2020|20-10-07 +Wales/ALDP-6C3E72/2020|20-07-01 +England/ALDP-5A15D0/2020|20-06-14 +Wales/PHWC-16881C/2020|20-04-21 +Wales/PHWC-3612C/2020|20-04-28 +England/PHEC-20B81/2020|20-04-16 +England/MILK-992E97/2020|20-08-26 +England/QEUH-95DD9B/2020|20-08-07 +England/MILK-9570D4/2020|20-06-10 +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 +DV_IZSPB_236_S50|LR992121.1|20-08-29 +England/SHEF-C184F/2020|20-08-31 +England/ALDP-9D8FFC/2020|20-09-18 +England/NORT-28B1EA/2020|20-04-18 +England/NORT-28B28D/2020|20-04-18 +England/MILK-62FD59/2020|20-07-05 +England/ALDP-90DDC7/2020|20-06-26 +USA/IL-UW-1082/2020|MT929034.1|20-07-27 +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 +England/LIVE-9BC33/2020|20-04-21 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 +England/CAMB-1B087F/2020|20-05-04 +England/PHEC-2223F/2020|20-04-30 +England/ALDP-5A2A49/2020|20-06-14 +England/ALDP-5A2D6E/2020|20-06-14 +USA/WA-S1407/2020|MT821568.1|20-05-19 +USA/WA-S1434/2020|MT821707.1|20-05-21 +England/CAMB-80B43/2020|20-04-11 +England/CAMB-7666D/2020|20-03-29 +USA/WA-S2573/2020|MT831840.1|20-06-17 +USA/WA-S2761/2020|MT947580.1|20-07-29 +England/ALDP-9BEB16/2020|20-09-09 +England/ALDP-A95376/2020|20-10-19 +England/QEUH-A9F5D0/2020|20-10-20 +England/QEUH-96AEF2/2020|20-08-15 +Scotland/CVR1557/2020|20-04-03 +Wales/PHWC-34610/2020|20-04-21 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 +England/CAMB-82060/2020|20-04-21 +England/CAMB-82E1B/2020|20-04-14 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 +Scotland/EDB300/2020|20-03-29 +Scotland/CVR3194/2020|20-04-28 +England/CAMB-1AA438/2020|20-04-17 +England/CAMB-1AFB7A/2020|20-05-02 +Wales/PHWC-48212D/2020|20-10-20 +England/QEUH-9C80B0/2020|20-09-10 +England/MILK-9C4087/2020|20-09-09 +England/QEUH-96F349/2020|20-08-17 +England/BIRM-5FC3B/2020|20-05-28 +England/PHEC-13ADF/2020|20-03-13 +England/BIRM-6529A/2020|20-09-30 +USA/WA-S2831/2020|MW077478.1|20-09-08 +England/NORT-282796/2020|20-03-28 +England/NORT-2839AE/2020|20-04-01 +England/ALDP-951E49/2020|20-06-10 +England/ALDP-9557A4/2020|20-06-12 +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 +IND/GBRC203a/2020|MT669321.1|20-06-07 +USA/WA-S2809/2020|MW077484.1|20-08-31 +England/QEUH-96E025/2020|20-08-18 +Scotland/QEUH-94375E/2020|20-08-02 +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +Switzerland/220001/2020|LR882220.1|20-07-24 +England/BIRM-6BECD/2020|20-11-17 +England/CAMC-946506/2020|20-07-15 +AUS/VIC2173/2020|MT972184.1|20-06-24 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 +England/ALDP-94A63C/2020|20-06-11 +England/ALDP-52A636/2020|20-06-01 +England/SHEF-D1CE6/2020|20-04-28 +England/SHEF-C0F96/2020|20-04-15 +England/QEUH-B10460/2020|20-11-02 +Scotland/QEUH-96D5CD/2020|20-08-20 +ZW-6983|LR963462.1|20-05-01 +ZW-6978|LR963455.1|20-05-01 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 +England/MILK-1169960/2021|21-01-25 +England/ALDP-952A44/2020|20-06-21 +England/QEUH-9B4A22/2020|20-09-07 +Netherlands/NA_359/2020|LR883961.1|20-04-07 +Netherlands/NA_589/2020|LR883868.1|20-04-05 +England/CAMB-1AE7FF/2020|20-04-29 +England/CAMB-762D2/2020|20-03-28 +England/MILK-A06194/2020|20-10-01 +England/CAMC-B32AA2/2020|20-11-05 +Scotland/EDB2049/2020|20-04-18 +Scotland/EDB2100/2020|20-04-19 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 +USA/WI-UW-269/2020|MT429191.1|20-04-06 +Wales/PHWC-340A9/2020|20-04-20 +Wales/PHWC-1667A8/2020|20-05-26 +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 +England/PHEC-14F5D8/2020|20-12-29 +USA/WA-S2992/2020|MW474166.1|20-08-12 +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 +USA/WI-UW-1126/2020|MT929103.1|20-08-13 +USA/WI-UW-1071/2020|MT929023.1|20-07-29 +USA/VA-DCLS-0481/2020|MT951936.1|20-05 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +KOR/YS006/2020|MW345824.1|20-06-04 +KOR/YS008/2020|MW345825.1|20-06-07 +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 +USA/WA-S1037/2020|MT642186.1|20-05-03 +USA/AK-PHL660/2020|MW173157.1|20-06-27 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 +USA/VA-DCLS-1006/2020|MT952676.1|20-06 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 +USA/UT-00495/2020|MT444543.1|20-04-02 +USA/UT-00353/2020|MT444564.1|20-03-27 +USA/UT-02970/2020|MW053933.1|20-05-01 +USA/UT-08378/2020|MW206039.1|20-05-26 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 +Scotland/EDB3598/2020|20-04-27 +Scotland/EDB2451/2020|20-04-23 +England/MILK-9934B2/2020|20-08-26 +Switzerland/240029/2020|LR880608.1|20-08-10 +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 +England/MILK-958598/2020|20-06-09 +England/ALDP-4F4092/2020|20-06-24 +England/LIVE-A91F7/2020|20-03-25 +England/CAMB-1AE865/2020|20-04-30 +England/BRIS-12C762/2020|20-05-13 +England/BRIS-127AD7/2020|20-04-16 +BHR/600023154_S29/2020|MW237743.1|20-10-14 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 +Scotland/QEUH-969725/2020|20-08-14 +England/QEUH-AD1648/2020|20-10-26 +England/CAMC-A3E658/2020|20-10-05 +England/MILK-A47DDF/2020|20-10-05 +England/LOND-DC4E3/2020|20-11-04 +England/MILK-99D3AC/2020|20-08-31 +IND/GBRC-366a/2020|MT951170.1|20-06-18 +IND/GBRC-392b/2020|MT954593.1|20-07-06 +Switzerland/310517/2020|LR898824.1|20-10-08 +England/MILK-9AB1A1/2020|20-08-31 +SAU/596/2020|MT755893.1|20-02-18 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 +England/ALDP-B75065/2020|20-11-12 +Scotland/QEUH-AD4AFE/2020|20-10-27 +SAU/578/2020|MT755891.1|20-02-17 +Scotland/EDB6640/2020|20-05-28 +England/PHEC-1491AD/2020|20-10-17 +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 +England/MILK-EB78C6/2021|21-01-02 +England/CAMC-C44338/2020|20-12-10 +England/ALDP-EEACDD/2021|21-01-03 +England/LIVE-DDCD09/2021|21-01-02 +England/MILK-ACEE55/2020|20-10-21 +Switzerland/260079/2020|LR882418.1|20-08-25 +Scotland/EDB6391/2020|20-05-13 +Scotland/EDB5108/2020|20-03-31 +USA/VA-DCLS-0489/2020|MT951943.1|20-05 +USA/VA-DCLS-1388/2020|MW067734.1|20-07 +Scotland/QEUH-961BB8/2020|20-08-02 +Switzerland/250091/2020|LR881897.1|20-08-19 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 +Switzerland/300264/2020|LR898541.1|20-10-01 +England/QEUH-963433/2020|20-08-10 +Scotland/CVR2213/2020|20-04-11 +Scotland/CVR1909/2020|20-04-06 +England/MILK-BB0022/2020|20-11-18 +England/MILK-BB0031/2020|20-11-18 +England/QEUH-9B3A8D/2020|20-09-04 +England/NORW-F1F9C/2020|20-10-24 +England/PHEC-14E15D/2020|20-12-09 +England/PHEC-149635/2020|20-10-28 +England/ALDP-A95DE1/2020|20-10-20 +England/ALDP-9E75E9/2020|20-09-25 +England/MILK-AC7B0A/2020|20-10-21 +England/NOTT-11336A/2020|20-09-16 +England/MILK-A799FE/2020|20-10-15 +England/CAMC-A417F5/2020|20-10-06 +England/QEUH-AE2A48/2020|20-10-26 +England/ALDP-A68CF9/2020|20-10-12 +England/CAMB-1B6439/2020|20-09-22 +England/MILK-9F1898/2020|20-09-25 +England/MILK-A7CDC2/2020|20-10-13 +England/CAMC-A5845E/2020|20-10-08 +England/ALDP-AA10DA/2020|20-10-22 +Wales/PHWC-4815AA/2020|20-10-13 +Northern_Ireland/NIRE-FB967/2020|20-08-17 +England/QEUH-7A4BBB/2020|20-07-14 +USA/WA-S2264/2020|MT831437.1|20-06-09 +USA/WA-S1922/2020|MT831459.1|20-06-03 +England/CAMB-83FF9/2020|20-04-25 +England/CAMB-75895/2020|20-03-18 +USA/WA-S2012/2020|MT831128.1|20-06-04 +USA/WA-S1775/2020|MT834200.1|20-06-01 +England/ALDP-B82A0D/2020|20-11-14 +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 +England/LOND-D6EBE/2020|20-04-03 +England/SHEF-C88A2/2020|20-04-21 +USA/WA-S860/2020|MT642111.1|20-04-24 +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 +England/QEUH-A0AFB4/2020|20-10-01 +England/ALDP-C48747/2020|20-12-12 +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 +Switzerland/230051/2020|LR882355.1|20-08-04 +Wales/MILK-9C729D/2020|20-09-12 +England/BRIS-12A70A/2020|20-05-01 +England/CAMB-77F61/2020|20-04-01 +England/QEUH-9AE4E1/2020|20-09-01 +England/MILK-A180DE/2020|20-10-01 +England/MILK-99D597/2020|20-08-30 +England/NORW-EE34B/2020|20-03-24 +England/NORW-E8693/2020|20-04-16 +Scotland/QEUH-96C6AD/2020|20-08-07 +Switzerland/270108/2020|LR882077.1|20-09-03 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 +England/CAMB-81070/2020|20-04-20 +Scotland/CVR41/2020|20-03-13 +England/QEUH-962E81/2020|20-08-10 +England/QEUH-96E605/2020|20-08-17 +England/QEUH-9F9265/2020|20-09-26 +England/QEUH-98EE43/2020|20-08-25 +England/NORW-E8709/2020|20-04-18 +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 +England/QEUH-9600C9/2020|20-08-05 +England/QEUH-9B92F8/2020|20-09-07 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 +England/CAMB-76490/2020|20-03-30 +England/CAMB-7CBD1/2020|20-04-05 +Japan/TKYE630414_2020/2020|LC593818.1|20-08 +Japan/TKYE622411_2020/2020|LC593808.1|20-07 +England/MILK-A18C8F/2020|20-10-03 +England/ALDP-C3C1FD/2020|20-12-10 +Wales/PHWC-15E0B7/2020|20-05-13 +Wales/PHWC-30957/2020|20-04-08 +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 +LC573289.2|20-06 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 +England/CAMB-74D5B/2020|20-03-19 +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 +Wales/PHWC-1645BF/2020|20-05-06 +Wales/PHWC-33C88/2020|20-04-17 +England/MILK-ABBCCA/2020|20-10-21 +England/MILK-ACCF27/2020|20-10-21 +Wales/PHWC-16578B/2020|20-06-07 +Wales/PHWC-166104/2020|20-05-15 +England/BRIS-125D67/2020|20-03-29 +England/BRIS-12C841/2020|20-05-12 +England/ALDP-94D8F7/2020|20-06-20 +England/NOTT-111BFB/2020|20-05-29 +England/MILK-8664D7/2020|20-07-17 +England/MILK-993300/2020|20-08-26 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 +Wales/PHWC-162751/2020|20-05-27 +England/ALDP-497D12/2020|20-06-03 +England/ALDP-9D9104/2020|20-09-18 +England/CAMC-A40F67/2020|20-10-06 +Scotland/QEUH-A00DF0/2020|20-10-02 +England/ALDP-9CC5BD/2020|20-09-15 +England/QEUH-9B6EAC/2020|20-09-09 +England/NORT-2A4CAE/2020|20-09-17 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 +Northern_Ireland/NIRE-FB369/2020|20-08-31 +England/LEED-2AA4EC/2020|20-04-06 +England/LEED-2AA394/2020|20-03-31 +England/BRIS-1854318/2020|20-04-28 +England/BRIS-12E6FA/2020|20-04-20 +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 +England/ALDP-5D52BE/2020|20-06-18 +England/ALDP-6FAF24/2020|20-06-29 +England/MILK-B01F25/2020|20-10-23 +Switzerland/210050/2020|LR882268.1|20-07-19 +England/ALDP-691499/2020|20-07-02 +England/ALDP-4A2BFC/2020|20-05-22 +England/ALDP-9B5BC4/2020|20-08-28 +England/ALDP-49F5B8/2020|20-05-22 +USA/WA-S2598/2020|MT831859.1|20-06-18 +USA/WA-S1840/2020|MT834024.1|20-05-27 +USA/WA-S1246/2020|MT821587.1|20-05-11 +USA/WA-S820/2020|MT641503.1|20-04-15 +Netherlands/NA_436/2020|LR883367.1|20-04-07 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 +England/CAMC-B36516/2020|20-11-05 +England/CAMC-B362D3/2020|20-11-05 +England/MILK-B3A284/2020|20-11-01 +England/CAMC-B365AD/2020|20-11-05 +AUS/VIC3114/2020|MT972550.1|20-07-06 +AUS/VIC9664/2020|MW156172.1|20-08-12 +AUS/VIC13094/2020|MW185501.1|20-07-31 +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 +Poland/1/2020|LR899030.1|20-05-20 +England/CAMC-947259/2020|20-07-21 +England/MILK-9927C9/2020|20-08-27 +USA/COVID20-0537/2020|MT981422.1|20-06-04 +USA/COVID20-1129/2020|MW067826.1|20-07-10 +England/QEUH-CAF17D/2020|20-12-15 +USA/COVID20-0777/2020|MW002812.1|20-06-26 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 +USA/VA-DCLS-1512/2020|MW197472.1|20-07 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 +USA/1453xE2/2020|MW521402.1|20-07-05 +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 +USA/WA-S2867/2020|MW173410.1|20-09-20 +England/MILK-6166F0/2020|20-07-05 +England/ALDP-9BCA93/2020|20-09-09 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 +England/CAMC-947D3A/2020|20-07-17 +USA/WI-UW-1194/2020|MT981478.1|20-08-11 +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 +USA/UT-05592/2020|MW054143.1|20-06-01 +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 +England/ALDP-955F15/2020|20-06-08 +England/MILK-9A6856/2020|20-08-31 +England/ALDP-94EB75/2020|20-06-17 +England/ALDP-6E2806/2020|20-07-01 +England/MILK-5642D2/2020|20-06-10 +England/CAMB-1B3593/2020|20-05-26 +England/SHEF-CDD62/2020|20-05-27 +England/SHEF-10B22B9/2020|20-04-20 +Scotland/QEUH-A9E7BD/2020|20-10-20 +Scotland/EDB7778/2020|20-09-16 +England/QEUH-9B703C/2020|20-09-09 +England/MILK-970CE0/2020|20-08-18 +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 +England/CAMC-1263B05/2021|21-02-10 +England/QEUH-AD3822/2020|20-10-26 +England/SHEF-10C9BD2/2020|20-12-20 +England/SHEF-10CC3AA/2020|20-12-17 +England/MILK-9A94E6/2020|20-09-01 +England/MILK-566C5A/2020|20-06-12 +England/CAMC-C2CDFC/2020|20-12-07 +England/MILK-CAA0EE/2020|20-12-18 +England/MILK-A1BC04/2020|20-10-03 +England/QEUH-96A29C/2020|20-08-13 +England/ALDP-9EA6D4/2020|20-09-24 +England/MILK-A6AEC4/2020|20-10-09 +England/MILK-B889A0/2020|20-11-14 +England/MILK-ACC08E/2020|20-10-21 +England/ALDP-9BE8B5/2020|20-09-09 +Scotland/EDB10724/2020|20-12-04 +Scotland/CVR4309/2020|20-09-14 +England/QEUH-AE4EA4/2020|20-10-27 +England/ALDP-9BECB9/2020|20-09-10 +Wales/PHWC-16E6A3/2020|20-10-02 +England/MILK-9A9D09/2020|20-09-01 +England/QEUH-B6C0E9/2020|20-11-11 +England/CAMC-AEA62E/2020|20-10-25 +Wales/PHWC-360A7/2020|20-04-29 +Wales/PHWC-260AA/2020|20-03-24 +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 +England/MILK-11A5634/2021|21-01-29 +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 +England/NORW-222D0F/2020|20-12-20 +England/MILK-F72F49/2021|21-01-05 +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +England/ALDP-94DD07/2020|20-06-19 +England/ALDP-49EC3C/2020|20-05-20 +PER/covper024/2020|MW030255.1|20-07-04 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 +PER/covper011/2020|MW030242.1|20-07-04 +PER/covper040/2020|MW030271.1|20-05-05 +England/MILK-B1553B/2020|20-10-23 +England/MILK-66F889/2020|20-07-03 +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 +England/LOND-12F65DC/2021|21-01-19 +Switzerland/310500/2020|LR898805.1|20-10-08 +Switzerland/300433/2020|LR898634.1|20-09-29 +England/QEUH-96BAA2/2020|20-08-14 +Wales/ALDP-B19FFD/2020|20-11-01 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +PER/covper018/2020|MW030249.1|20-07-03 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +England/MILK-9A699F/2020|20-09-01 +England/CAMC-C3E586/2020|20-12-10 +England/CAMC-DE5550/2020|20-12-29 +England/ALDP-A525BB/2020|20-10-07 +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 +England/MILK-A45AF8/2020|20-10-06 +Scotland/QEUH-A613BF/2020|20-10-13 +Switzerland/180039/2020|LR861669.1|20-07-01 +Switzerland/220022/2020|LR882244.1|20-07-27 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 +Japan/TKYE624705_2020/2020|LC593810.1|20-07 +IND/GBRC455b/2020|MW600453.1|20-12-24 +IND/GBRC455a/2020|MW600436.1|20-12-24 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 +USA/WI-UW-114/2020|MT706234.1|20-03-30 +England/CAMC-947392/2020|20-07-18 +England/MILK-977469/2020|20-07-24 +AUS/VIC9179/2020|MW153248.1|20-08-21 +AUS/VIC11646/2020|MW155572.1|20-07-22 +Scotland/EDB11343/2020|20-12-26 +Scotland/EDB11342/2020|20-12-26 +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 +England/CAMC-A65DDB/2020|20-10-11 +England/CAMC-AAF5A0/2020|20-10-22 +England/MILK-A192C8/2020|20-10-01 +England/QEUH-9F3FDD/2020|20-09-24 +England/MILK-ABBF2B/2020|20-10-22 +England/QEUH-96A85E/2020|20-08-14 +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 +England/PHEC-149F0D/2020|20-11-19 +England/MILK-BE717A/2020|20-11-29 +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 +Scotland/QEUH-BEAF22/2020|20-12-04 +England/MILK-A230C1/2020|20-10-03 +Scotland/QEUH-9696CE/2020|20-08-14 +England/CAMC-B3582D/2020|20-11-05 +England/MILK-A796E8/2020|20-10-14 +Northern_Ireland/QEUH-969C53/2020|20-08-14 +England/ALDP-9E79B0/2020|20-09-24 +England/MILK-B561FE/2020|20-11-06 +England/CAMC-9DFBC4/2020|20-09-21 +England/QEUH-AD1165/2020|20-10-25 +England/ALDP-FB5E3E/2021|21-01-11 +England/ALDP-E8756E/2021|21-01-04 +England/ALDP-A2EAE6/2020|20-10-05 +Scotland/QEUH-A636C3/2020|20-10-10 +England/QEUH-A76C07/2020|20-10-12 +England/MILK-AC7997/2020|20-10-21 +Scotland/QEUH-9DC927/2020|20-09-22 +Scotland/QEUH-9B75D3/2020|20-09-04 +England/CAMC-AEACFF/2020|20-10-25 +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 +England/MILK-97356A/2020|20-08-14 +England/MILK-9A9F7C/2020|20-08-31 +England/OXON-F42364/2020|20-12-18 +England/MILK-9C2766/2020|20-09-10 +England/ALDP-A95A9F/2020|20-10-19 +England/PHEC-149FA3/2020|20-11-20 +England/QEUH-C9332B/2020|20-12-17 +England/CAMC-A649C9/2020|20-10-10 +England/MILK-B04890/2020|20-10-24 +England/CAMC-A57F03/2020|20-10-09 +England/MILK-A7D15C/2020|20-10-13 +Wales/PHWC-47F3A5/2020|20-10-07 +England/ALDP-A85BCC/2020|20-10-17 +England/ALDP-A2FCA3/2020|20-10-05 +Scotland/MILK-A69E6B/2020|20-10-09 +England/MILK-A7D1A7/2020|20-10-13 +England/MILK-A91486/2020|20-10-16 +AUT/2021006354/2021|MW672357.1|21-02 +England/MILK-E7F4C6/2021|21-01-02 +England/ALDP-AA169C/2020|20-10-22 +England/MILK-A474DA/2020|20-10-06 +England/ALDP-B483EA/2020|20-11-07 +England/QEUH-AA0035/2020|20-10-20
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_18_all_paths.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,595 @@ +1 +2 C24034T +England/BRIS-1853249/2020|20-04-02 C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 +3 C875T +Wales/PHWC-25B04/2020|20-03-24 A20637G +Wales/LIVE-A6831/2020|20-03-16 T14859C +Scotland/EDB354/2020|20-03-30 C7423T,A29780C +5 C20270T +England/SHEF-BFF8B/2020|20-03-25 C1473T +England/SHEF-BFF21/2020|20-03-25 A18671G,A29683T +8 T4949C +England/SHEF-BFFC7/2020|20-03-25 G28027T +England/PHEC-1E01E/2020|20-04-03 C22445T +9 C29635T +DP0476/2020|LC571003.1|20-02-16 C29592T +DP0191/2020|LC570980.1|20-02-15 A3854G +10 C14805T,G26144T +11 T17247C +12 C12400T +Switzerland/100159/2020|LR884273.1|20-03-16 C16995T +England/LOND-126031F/2020|20-03-15 A20511G +13 C8078T +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +Scotland/CVR44/2020|20-03-13 G443A,A1587G +Scotland/CVR207/2020|20-03-18 C988T,G12832A +England/ALDP-9EE3AC/2020|20-05-06 G20991T,C23707T +England/CAMB-8042A/2020|20-04-10 A2480G,C2558T,A4015T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 G5572T,C28311T +28 C241T,C3037T,C14408T,A23403G +England/BRIS-125347/2020|20-03-27 G7042T,G8861T +IND/763/2020|MT577009.1|20 C4809T +31 G25429T +England/CAMB-76515/2020|20-03-29 C16289T,T25429G +England/LEED-2A8D10/2020|20-03-31 C13730T,C25916T +35 A10874G,C25916T,T26677C +36 G25440A,G29745T +Scotland/EDB2049/2020|20-04-18 T25916C +Scotland/EDB2100/2020|20-04-19 +England/CAMB-1AC7D3/2020|20-04-22 A13863G +38 G17278T,C19610T,T26906C,G29688T,G29757T +Scotland/CVR2381/2020|20-04-13 C1848T +Scotland/CVR2197/2020|20-04-11 G21776T +Scotland/CVR1519/2020|20-04-03 A6441G,A28841G +England/NORW-E8C37/2020|20-04-13 C3602T,C11460T,A24232G +43 G1589A,G29474T +Wales/PHWC-3122E/2020|20-04-10 A22457G +Wales/PHWC-1645EC/2020|20-05-10 A11438G +England/PHEC-127E8/2020|20-03-28 G21538T +England/CAMB-75BD8/2020|20-03-29 C18060T,G28514T +47 C25665T,G28325T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 G16075T +49 G3871T +USA/WI-UW-26/2020|MT706147.1|20-03-24 A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 C19862T +USA/WI-UW-558/2020|MT750137.1|20-06-25 A696C +53 G25563T +54 C8389T +57 C601T,G12832T,G27915A +USA/COVID20-0537/2020|MT981422.1|20-06-04 C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 A28165G +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 G1319A,G2945A,C10156T,T17208C +England/LEED-2A87C7/2020|20-04-03 G3230A,C23453T +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 C1997T +61 C1059T +62 C24381T +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 C23718T +63 C24442T +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 T20037C,G28073T +67 T1059C,C1594T,C11109T +England/CAMB-7A7DF/2020|20-04-02 G8578A +Netherlands/NA_18/2020|LR878352.1|20-03-09 C23506T +68 C18555T,C28892T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 A6035G +72 A3103C,C5893T,G24368T,A28117T +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 A28356G +Wales/PHWC-2E0A2/2020|20-04-10 C18568T,G24368T,C24621T +USA/WA-S2746/2020|MT947577.1|20-07-19 C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +USA/UT-05590/2020|MW084605.1|20-06-01 A2151G,G19542T,C23551T,C28821A +Netherlands/NA_588/2020|LR883860.1|20 G18281A,A20742G,A20755C,G25784T +86 C11916T +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 G28376T +89 G26020T +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 C4012T +90 G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 C8109T +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 T12925C +91 C18998T,G29540A +USA/VA-DCLS-1147/2020|MT992749.1|20-04 A20553G,G22487C +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 C28863T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 C5540A,C19145T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 C10458T,C18693A,G26828T +England/MILK-6166F0/2020|20-07-05 C66A,C4455T,C7768T,A8773G,C17304T,T22912G,T24805C,C26270T +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 C13252T +103 C16650T,A20675T,G29179T,G29779T +KOR/YS006/2020|MW345824.1|20-06-04 C26261T +KOR/YS008/2020|MW345825.1|20-06-07 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 A12820G,C16762T,A17637G,C20762T,C28887T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 C379A,A20503G +108 C27964T +109 C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +USA/AK-PHL660/2020|MW173157.1|20-06-27 A16872C +USA/WI-UW-1194/2020|MT981478.1|20-08-11 G9928T,C10377T +USA/MN-QDX-981/2020|MW065078.1|20-03-15 C28833T +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 C9967T,G17590T +117 G17808T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 C15352T +118 C24378T +USA/UT-00495/2020|MT444543.1|20-04-02 G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 T11131A +USA/IL-UW-1064/2020|MT929016.1|20-07-26 G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +USA/WI-UW-1119/2020|MT929068.1|20-07-27 A19899T,A21464G +123 T8788C,G26951A +England/CAMB-7771E/2020|20-03-30 C4586T +England/CAMB-7DC91/2020|20-04-05 C4321T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 C7528T,G8213A +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 C775T,C23683T,C27923T,G28975T +USA/WA-QDX-235/2020|MT806806.1|20-04-27 A12557C,A23534T +127 C1917T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 G29431T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 C23191T,A25910C +130 C10582T +Scotland/EDB2451/2020|20-04-23 C1076T,T10963A +Switzerland/240029/2020|LR880608.1|20-08-10 C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,T27622C,G27632T,C27804T,C28830A,G29402T,G29779T +134 C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 T9070C,C20325T +England/LIVE-A91F7/2020|20-03-25 T13006C,C19186T,C25688T +146 G3892T +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 G20062T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 C16428T,C20555T,C21772T +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 C3044T,G25523T,T27869C +152 C66T,C17069T,C26801T +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 C13761T +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 A26864T +USA/WA-UW-6327/2020|MT412324.1|20-04-02 C5240G,C26625T +154 C27847T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 C6628T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 T8041C,C18029T,G22225T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 C335T,G526C,T16425G +USA/WI-UW-994/2020|MT846680.1|20-07-20 T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +England/BRIS-127AD7/2020|20-04-16 C1968T,G3638T,G28808T,G29434C,G29705T +USA/WI-UW-522/2020|MT750102.1|20-06-24 C5310T,C12294T,C25511T +USA/DC-HP00089/2020|MT509482.1|20-03-31 C9510T,C11919T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 C5183T,G28878T +164 C25976A +USA/MI-QDX-620/2020|MW064645.1|20-03-17 G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 C18981T +165 C7851T,C20233T +England/BRIS-12D9F2/2020|20-05-06 A20262G +England/BRIS-12B156/2020|20-05-08 A13707G +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 C25572T,G29747T +USA/COVID20-1144/2020|MW067817.1|20-07-10 G2286A,A4197G,G7954T,A10552G,T25577G,A28715T +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G26730T,G27955A,C28854T +172 C1887T +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 A27979T +Wales/PHWC-26B12/2020|20-03-29 C829T,G28371T +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 T3037C,C10851T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 C1734T,G12160T,C23664T +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 G1495T,T7332C,T7831A,G28845T +Northern_Ireland/NIRE-1021DD/2020|20-03-14 A6360G,G20709T +Scotland/EDB6052/2020|20-05-08 G18213T,A18818G +184 C9286T,G28899C +England/CAMB-7FBCF/2020|20-04-16 A12556G +England/CAMB-784BC/2020|20-04-06 A13852G +B90|LR898037.1|? C6406T,G18972A,A21360C +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 G7295T,C28290T +191 C2416T +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 G26233T,C27881T +193 G8371T +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 C2937T,C21310A +195 C22477T +England/ALDP-955F15/2020|20-06-08 C882T,C17746T,G19962T,G25793A,G28907T +England/ALDP-94EB75/2020|20-06-17 C3811T,G22225A +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 T9708C,C10712T +England/BRIS-130015/2020|20-04-11 C6361T,C14786T,G20578T +204 G10631T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 G8131T +Wales/PHWC-2AF12/2020|20-04-06 C19884T,C26447A +207 C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +321398|LR962930.1|20-10-13 C22208T +England/QEUH-B8053B/2020|20-11-14 G22225T +IHUCOVID-0428|LR794641.1|? C6401T,T10480C,C13458T,C20946T +USA/WA-S3458/2020|MW494078.1|20-12-07 T2300C,C3535T,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +210 T17838C,G26450T +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +211 C18877T +212 C26735T +England/SHEF-10B22B9/2020|20-04-20 T241C,G3482A,A8821G,C15752T,G24197T,T26066C +IND/GBRC-366a/2020|MT951170.1|20-06-18 C26058T,G28851T +220 C22444T +SAU/596/2020|MT755893.1|20-02-18 A23503G +221 C593T,T3118C,T10200C,A12547G,C21772T,C28854T +Scotland/QEUH-A9E7BD/2020|20-10-20 A3120C +Scotland/EDB7778/2020|20-09-16 C28045T +223 C22444T,C28854T +224 T1947C +England/CAMC-A65DDB/2020|20-10-11 G2659T,G5008T,G19549T,C25349A,G25947C,G26062T +England/QEUH-9F3FDD/2020|20-09-24 T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +England/QEUH-96A85E/2020|20-08-14 C7528T,T23986C,C29555T +228 G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 C14724T +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 A6391G +England/PHEC-149F0D/2020|20-11-19 C1122T,T4057C,G6077T,A10323G,G13858T,G21724T,C27092T,C27434T,G28975T +England/MILK-970CE0/2020|20-08-18 C6312T,C12513T,G14122T,A20559G,C23127T,G26389T,T26876C,C28311T,A28900C +England/SHEF-10CC3AA/2020|20-12-17 A749G,C1420T,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +England/MILK-566C5A/2020|20-06-12 C11514T,C13168T,G24764T +237 C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +England/CAMC-C2CDFC/2020|20-12-07 T3366C +England/MILK-CAA0EE/2020|20-12-18 C28411T +240 C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +England/MILK-97356A/2020|20-08-14 C15720T +England/MILK-A230C1/2020|20-10-03 A2175G +243 C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 C15237T +England/QEUH-96A29C/2020|20-08-13 C15654T,C16915T,G21204T,T24202C,G28899T,G29692T +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 C27416T,G28086T +USA/UT-03892/2020|MT711875.1|20-04-13 C683T,A6512C +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 G10793T,C29311T +USA/WA-S1281/2020|MT821642.1|20-05-12 A2161G,G11417T,C16376T +USA/WI-UW-288/2020|MT706396.1|20-04-08 C9195T,T15354C,C21855T +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 C1288T,G1298A,G25445T,G28851T,G29254T +England/ALDP-5D3DEC/2020|20-06-19 A1154G,G29474T +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 A1096G,C1420T,G14874T +Scotland/EDB5108/2020|20-03-31 C2113T,C7765T,C17690T,T24923C +265 A25524G,C26801T,G29449T +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 C10741T +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 C9967T,A11246T,A23949G,C29013T +269 C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +England/QEUH-9C7EA8/2020|20-09-11 G2407T,T2924C,G11761T +England/MILK-9A8AB8/2020|20-08-31 C222T +Scotland/GCVR-172150/2020|20-03-30 C1545T,C22879A +England/BRIS-122C4F/2020|20-04-02 A11782G,G22203T,G27754T +275 A20268G +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 G28881A +277 C28854T +Scotland/EDB3341/2020|20-04-08 G27987T +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 C4633T,T14643C,C22482T,G27506T +284 G7798T +England/LOND-D5444/2020|20-04-15 C12789T +Scotland/CVR3238/2020|20-04-26 G22992T +286 C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 C16362T +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 G25775T +Scotland/EDB3662/2020|20-04-28 T5507A,A19855G +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 C4596A,G19086T,C23114T +England/OXON-B1781/2020|20-05-04 C1714T,C27213T +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 G208T,G23522A,A25747C +297 A8884G,C16694A,C26177T +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 C24258T +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 C884T,G2258A,A6441G,C8140T,A9204G,C29445T +303 C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +England/CAMC-94C02D/2020|20-07-15 C27371T +England/MILK-95DBDD/2020|20-06-20 A20667G +England/CAMB-79ECC/2020|20-04-01 A10323G,G21778A +England/QEUH-963433/2020|20-08-10 C2706T,C5339T,C25731T,C28833T +322 T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C +England/ALDP-A2FCA3/2020|20-10-05 T7919G,C20451T,G21770A,C24734T +330 C16394T,C22127T,G23876A,G25947T,C29274T +England/MILK-A474DA/2020|20-10-06 A6659G,G25218T +England/QEUH-AA0035/2020|20-10-20 T8110C,G11417T +341 C15324T +USA/WI-UW-37/2020|MT706158.1|20-03-22 G11417T +IND/GBRC174b/2020|MT607610.1|20-06-05 C3634T,C22444T,C28854T +France/10036BG/2020|MT470106.1|20-03 G28202A +POL/PL_MCB_97/2020|MW273879.1|20-05-10 C2570T,A7031G,G13617T +348 G19542T,G20679A,T27576G +Scotland/CVR3629/2020|20-05-24 G18380T +Scotland/QEUH-5456F9/2020|20-05-13 C6606T +England/QEUH-990752/2020|20-08-29 C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +350 C15277T +AUS/VIC38/2020|MT450953.1|20-03-11 C10350T +IHUCOVID-0133|LR794459.1|? C8394T +Switzerland/240009/2020|LR880588.1|20-08-07 G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +354 A26530G +355 G11596T +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 G20568A +356 C8293T,T18488C,T24739C +Switzerland/101166/2020|LR824397.1|20-03-31 C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 C17118T +PER/covper091/2020|MW030227.1|20-03-17 C15277T,A21917G +England/CAMB-737D6/2020|20-03-31 A2775G,G4255T,C6861T,C13568T,A20355G +Scotland/GCVR-173C30/2020|20-04-07 G3831A,T7441C +361 T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +362 C3426T,C19862T +363 C11050A +England/MILK-BB0022/2020|20-11-18 +England/MILK-BB0031/2020|20-11-18 +England/PHEC-152C73/2020|20-11-16 C21682T +Scotland/QEUH-9D11C0/2020|20-09-16 T4195A,C10977T,C24334T,G25049T,G25062T,C26151T,C28657T,C29366T +366 C27944T +367 G204T +England/ALDP-9BE8B5/2020|20-09-09 T16242A,G28745A +369 C21614T +Scotland/CVR4309/2020|20-09-14 C7471T +373 C15480T +England/QEUH-A76C07/2020|20-10-12 G21777A +England/MILK-AC7997/2020|20-10-21 C125T +Scotland/QEUH-9B75D3/2020|20-09-04 G8179T,G29778T +376 A1987G +England/ALDP-9BECB9/2020|20-09-10 T14721C,C23029T,T25519G +England/MILK-9A9D09/2020|20-09-01 A1230G,G6344T +England/CAMC-AEA62E/2020|20-10-25 C66T,G10870T,A11781G,C18329T,C25614T +380 A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +England/PHEC-14E15D/2020|20-12-09 C20178T +England/PHEC-149635/2020|20-10-28 +Switzerland/270068/2020|LR882987.1|20-09-02 C13671T,C14805T,G17058T,G17278T,A20284T,T20285C,A27755T +England/ALDP-9E75E9/2020|20-09-25 A408G,G2764T,C22088T,C29686T +386 G23311C +England/ALDP-A68CF9/2020|20-10-12 G6476T,C10626T +England/MILK-9F1898/2020|20-09-25 C5239T,G25440T,C27752T +Wales/PHWC-4815AA/2020|20-10-13 C12049T,G21800T,A22053C,G22346T +England/ALDP-4A2A77/2020|20-05-22 C7834T,C16997T,G25429T +England/BRIS-12468B/2020|20-04-09 C1909T,T27576C +England/NORW-E9DF7/2020|20-05-02 C2940T,C7765T +398 C6990T +Wales/PHWC-27B20/2020|20-03-30 T22435C +Wales/PHWC-2624A/2020|20-03-27 C27476T +Wales/PHWC-16930B/2020|20-04-01 C3264T,C29200T +Wales/PHWC-29E43/2020|20-04-04 G9220A,T26512C +England/LOND-D3534/2020|20-03-27 C25350T,T27280C +England/LIVE-A63E5/2020|20-03-18 G680T,T17835C +Wales/PHWC-27461/2020|20-03-31 C5506T,G14241T,C19374T +AUS/VIC1056/2020|MT451723.1|20-04-03 T7438C,A21944T,C29353T +409 A187G +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 A10770G,C16017T,T27212C,G27561T +England/BRIS-128DCE/2020|20-04-14 C12213T,C19066A +England/LIVE-A65EF/2020|20-03-19 G10523C,G14580T +IND/GBRC209a/2020|MT664202.1|20-06-11 A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,G25563T,C29750T +Scotland/CVR30/2020|20-03-13 C1884T,T26497C +IND/GBRC99/2020|MT509504.1|20-05-06 G4866T,C14425A,A21511G +AUS/VIC1239/2020|MT451821.1|20-04-02 C6723T,T26094C,G28476T +IND/GBRC128/2020|MT539172.1|20-05-02 C4084T,G5572T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 A544G,C17104T +Netherlands/NA_302/2020|LR878041.1|20-04-01 A3058G,G20275A +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 G2282A,T9742C,C17639T,G20160T +423 C23422T,T23849C,C29686T +Scotland/CVR129/2020|20-03-13 G29227A +Scotland/CVR52/2020|20-03-14 C25667T +426 G28882A,G28883C +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 T241C +427 G28881A +428 C28887T +GRC/202_32984/2020|MT459870.1|20-03-12 +GRC/208_33922/2020|MT459876.1|20-03-14 +429 T19839C +England/QEUH-7A4BBB/2020|20-07-14 C2511T,G3242A,G8120C,C21646T,A24205T,G28083T +USA/WA-S1922/2020|MT831459.1|20-06-03 G242T,C12528A,C18086T +432 G25552T +Wales/PHWC-260AA/2020|20-03-24 T7168C,G11801A +434 A26332G,A28877T,G28878C +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 G27670T +USA/WA-S1775/2020|MT834200.1|20-06-01 G13513A,C28256T,C29784T +England/ALDP-B82A0D/2020|20-11-14 C4456T,C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +443 C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 C22264T +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 T27824C +446 C6573T,C25528T +England/BRIS-12A70A/2020|20-05-01 C21077T +England/CAMB-77F61/2020|20-04-01 G22299A +England/PHEC-1B7C1/2020|20-04-08 C18115T +Scotland/CVR3919/2020|20-06-21 A22330G,T27264G +England/ALDP-9558ED/2020|20-06-12 C1800A,G2398A,C23854T,G25972A,G27842T +England/BRIS-12F78D/2020|20-03-10 T11638C,C25584A +452 C17678T +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 T3745C +456 T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 T4711C,A6709G,C17125T +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 C673T +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 G443A,T6579C,G28378T +England/OXON-AEBC7/2020|20-04-12 C9430T,G24781T,G29706T +Wales/PHWC-164485/2020|20-05-02 C9438T,A16653G,G29777T +England/ALDP-51F142/2020|20-06-02 G922T,C6541T,C19983T +England/ALDP-49E391/2020|20-05-20 C3170T,C6336T,T26260G,C27673T +Northern_Ireland/NIRE-10677D/2020|20-05-14 C10376T,G18148A,C26208T +475 A27932G,G29705T +England/MILK-9705F4/2020|20-08-18 C15045T +England/ALDP-9B6440/2020|20-08-28 +476 G25088T +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 T733C,C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,T26149C,G28167A,C28512G,A28877T,G28878C +Scotland/EDB6515/2020|20-06-15 +England/NORW-EE34B/2020|20-03-24 G18315A,C24904T,T25088G +England/ALDP-6839B9/2020|20-07-02 A2576T,C5175T,C6401T,A27691T +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 C18652T,T22843C +England/NOTT-111117/2020|20-05-03 A2526C,C10440T,T25316C +England/ALDP-68EFBC/2020|20-07-02 T13827C,G18756T,C23430T +495 G3230A,T24076A +England/PHEC-16F19/2020|20-03-31 C4570A +England/GSTT-265D4DF/2020|20-03-19 +498 C1420T,C19366T +Northern_Ireland/NIRE-FBB52/2020|20-04-13 C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 C6114T +499 G10097A,C23731T +England/NORT-283BE4/2020|20-04-03 C24026T +500 C4002T,C13536T +England/CAMB-81070/2020|20-04-20 C4698T +501 T28110C +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +Switzerland/300433/2020|LR898634.1|20-09-29 G2995T,T4871C,C6449T,C10252T,C19366T,G27382T,T27808C +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 G24794T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 C15656T,C25936T +511 A1630C,C27679T +England/BRIS-123EDF/2020|20-04-08 C2509T +England/BRIS-123F09/2020|20-04-08 C9118T +513 C3373A +514 C2706T,G9968T,G16647T,T23480G +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +Scotland/CVR41/2020|20-03-13 C823T +521 C313T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 C3096T +Japan/TKYE627000_2020/2020|LC593811.1|20-08 T4346C,C7728T,C9286T,C10376T,C14708T,C28725T,G29692T +England/QEUH-96E605/2020|20-08-17 C2841T,G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 A11348G,G28690T +IND/GBRC455a/2020|MW600436.1|20-12-24 G160T,T682C,C900T,G3259T,C4048T,C5700A,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 C823T,A11023G +Japan/TKYE622411_2020/2020|LC593808.1|20-07 C8917T,C18167T,G21518T,G28975T,G29773T +England/MILK-A18C8F/2020|20-10-03 G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +Wales/PHWC-30957/2020|20-04-08 T11654C,G22627A,G28628T +LC573289.2|20-06 G2305T,G25563C,G28178T +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 C2509T,G5015A,C14724T,G24262T,G27703T +542 T29148C +543 G25793T,T27299C +544 T25793G +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 C28969T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 C25916T,T28360C,C29769T +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 A2475G,C14805T +England/CAMB-74D5B/2020|20-03-19 +England/LOND-D53CF/2020|20-04-15 G621A +551 G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +Scotland/CVR3185/2020|20-04-28 C16946T,G26615T +England/BRIS-127A40/2020|20-04-17 G2659T,C17249T,G17722T +England/EXET-136ED9/2020|20-04-22 G2164A,C8733T +564 G569A,C5482T,G17944T,C18747T,A22182G +England/ALDP-907D09/2020|20-06-22 C20320T +England/MILK-85E3E4/2020|20-07-18 G2144T +England/MILK-95862C/2020|20-06-11 A2641G,C3622T,C25844T,C28087T,G28557T +566 G21624T +England/PHEC-219E0/2020|20-05-01 T23227C +England/LEED-2AA59E/2020|20-04-06 C28969T +England/BRIS-125D67/2020|20-03-29 C6347T,G18859T +569 G1874T,C8683T,C28093T +England/ALDP-94D8F7/2020|20-06-20 A9997C +England/NOTT-111BFB/2020|20-05-29 G26426A +570 A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +England/ALDP-95A754/2020|20-06-13 T20764C +England/ALDP-95CEA8/2020|20-06-15 C14931T +572 G26918T,T29464C +England/MILK-8664D7/2020|20-07-17 C29733T +England/CAMC-947392/2020|20-07-18 C7843T,G15438T,C25207T,T25949C,C28453T +Wales/PHWC-162E7A/2020|20-05-19 C5497T,C6582T +England/ALDP-71D072/2020|20-07-01 C21637T,T26156C,A28169G +583 G25617T +England/ALDP-954C6A/2020|20-06-13 G27857T +England/CAMC-A40F67/2020|20-10-06 G1590T,A11120G,A12529G +586 C835T +England/QEUH-9B6EAC/2020|20-09-09 A29700G +England/NORT-2A4CAE/2020|20-09-17 C27945T +Northern_Ireland/NIRE-FB369/2020|20-08-31 A6900G,G25456T +589 G21724T +England/LEED-2AA394/2020|20-03-31 G11230T,C20941T,G23587C +592 G17302T,C25046T +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 A5277G +England/PHEC-20B81/2020|20-04-16 C20474T +England/MILK-9570D4/2020|20-06-10 T3163C,C7768T +DV_IZSPB_236_S50|LR992121.1|20-08-29 C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +England/ALDP-9D8FFC/2020|20-09-18 G1210T,G9802T,G12067T,T20613C +598 C3177T,G22093A +England/NORT-28B1EA/2020|20-04-18 C27741T +England/NORT-28B28D/2020|20-04-18 A8734G +599 G10265A +England/ALDP-5D52BE/2020|20-06-18 T13794G,T28494C +England/ALDP-4A2BFC/2020|20-05-22 A20826G,A23207G +England/ALDP-49F5B8/2020|20-05-22 A19650G,T21368C +England/LIVE-9BC33/2020|20-04-21 C11620T +England/ALDP-5A2A49/2020|20-06-14 T3154C,C18981T +609 G16813A +USA/WA-S1434/2020|MT821707.1|20-05-21 C8802T +USA/WA-S2598/2020|MT831859.1|20-06-18 C6445T,G16852T,G29254T +USA/WA-S820/2020|MT641503.1|20-04-15 A5538T,G17261A,T25783C +USA/WA-S2573/2020|MT831840.1|20-06-17 G18803T,A22606G +England/ALDP-9BEB16/2020|20-09-09 C313T,C2445T,C9430T,G14428T,T15156C,C20368T,C26527T,C29149T,G29239A +616 C19170T,G19509A +Scotland/CVR1557/2020|20-04-03 G23401T +Wales/PHWC-34610/2020|20-04-21 G16014A +617 C26313T +Netherlands/NA_436/2020|LR883367.1|20-04-07 G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 C4824T +618 C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +619 G174T,G210T,C2453T +England/CAMC-B36516/2020|20-11-05 C2918T +England/CAMC-B362D3/2020|20-11-05 C29311T +620 T8603C,A17615G,G25437T +England/MILK-B3A284/2020|20-11-01 C27046T +England/CAMC-B365AD/2020|20-11-05 T19232C +621 A1163T +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 C19273T +623 T7540C,G16647T,G22992A,G23401A +AUS/VIC13094/2020|MW185501.1|20-07-31 G6662A +AUS/VIC11646/2020|MW155572.1|20-07-22 G6617T,C18555T,C22987T +625 C19488T +England/CAMB-82E1B/2020|20-04-14 A8374T +England/CAMC-947259/2020|20-07-21 A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +628 A11869G,T27484C +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 G29422T +Scotland/EDB300/2020|20-03-29 C2399T,C15240T +England/CAMB-1AA438/2020|20-04-17 T4149C,C12525T,G25599T +England/MILK-9C4087/2020|20-09-09 T1543A,C1938T,T4369C,T22020C,C27911T +England/PHEC-13ADF/2020|20-03-13 T15978C,G24794T +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 C21205T,G21255C,G28960T +Scotland/QEUH-94375E/2020|20-08-02 G5554T,G19891T,C22938A,C24034T,G25249T,G25785T,G26152T,C27532T,G28321T,C29614T +641 T3615C,G22256T,C23802T,A27403T,C27741T +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +644 G596T,T18231C +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 T3127C +648 G5950T,C19164T,A21137G,T27447C,T29661C +ZW-6983|LR963462.1|20-05-01 C10341T +ZW-6978|LR963455.1|20-05-01 A13833G +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C,C28720T +Netherlands/NA_359/2020|LR883961.1|20-04-07 C7095T,C13502T,A16179G +England/CAMB-1AE7FF/2020|20-04-29 G4207T,A4208C,C6033T,G11842T +England/ALDP-BCA4B0/2020|20-11-23 G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +USA/WA-S1222/2020|MT821613.1|20-05-08 C186T,C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +660 A14940G +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 T514C,C22033A +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 C11050T,A12557G,C24904T,A27359G +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 T15867A,C25692T +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 G7273A,C10277T +667 G29711T +England/LIVE-9D7D6/2020|20-04-15 C1218T,C27493T,G27806T +USA/WI-UW-314/2020|MT706422.1|20-04-16 A4838G,C7420T,C14937T,C20148T,G25907T +671 C28854T +Scotland/CVR780/2020|20-03-27 C5997T,C12710T +Japan/TKYE63557_2020/2020|LC581365.1|20-03 C11752T,C25665T,C26447T,A27700G,T28854C,T28912C +674 C6312A,C13730T,C23929T,C28311T +USA/CA-QDX-33/2020|MT614459.1|20-03-15 C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 C11455T +MYS/188407/2020|MT372480.1|20-03-18 C6310A,C19524T,T25473C +676 C8782T,T28144C +677 A23403G,C26088T +679 G9928T,G23403A +Scotland/EDB5629/2020|20-03-24 G27870T +Scotland/EDB5040/2020|20-04-02 C593T +680 C3037T,A20268G +Spain/R11/2020|LR884126.1|20-03-06 T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 +682 T9477A,C14805T,G25979T +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +683 C28863T +Spain/R10_33/2020|LR884127.1|20-03-02 T25979G +685 C4540T,C28657T +Scotland/CVR2435/2020|20-04-14 C15274T,C25714T,C26029A +AUS/VIC995/2020|MT451680.1|20-03-31 G17632A,C28311T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 G16381A,T17877C,G25500T,C25854T,G28878A,G29742A +697 T490A,C3177T,C24034T,T26729C,G28077C +USA/COVID20-0008/2020|MT764174.1|20-03-10 T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +699 G1397A,T28688C,G29742T +England/PHEC-1A601/2020|20-03-04 A19526G +AUS/VIC1878/2020|MT745600.1|20-03-29 C1076T,A28955T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_18_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,360 @@ +clade root_id from_tree_root +19A 1 +B 1 +B.26 Scotland/EDB354/2020|20-03-30 > C7423T,A29780C +B.48 5 > C20270T +B.15 8 > T4949C +B.5 9 > C29635T +B.54 10 > C14805T,G26144T +20A 28 > C241T,C3037T,C14408T,A23403G +B.1.108 28 > C241T,C3037T,C14408T,A23403G +B.20 660 > A14940G +B.11 USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 > T514C,C22033A +B.46 USA/CA-QDX-1986/2020|MW190732.1|20-03-18 > C11050T,A12557G,C24904T,A27359G +B.1.14 USA/CA-CZB-1015/2020|MT438733.1|20-04-22 > T15867A,C25692T +B.19 USA/CA-CZB-1051/2020|MT449644.1|20-04-06 > G7273A,C10277T +B.6 674 > C6312A,C13730T,C23929T,C28311T +19B 676 > C8782T,T28144C +A 676 > C8782T,T28144C +B.4 699 > G1397A,T28688C,G29742T +B.23 England/SHEF-BFF21/2020|20-03-25 > C20270T > A18671G,A29683T +B.33 11 > C14805T,G26144T > T17247C +B.29 England/ALDP-9EE3AC/2020|20-05-06 > C14805T,G26144T > G20991T,C23707T +B.40 England/CAMB-8042A/2020|20-04-10 > C14805T,G26144T > A2480G,C2558T,A4015T +B.41 SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 > C14805T,G26144T > G5572T,C28311T +B.1.105 England/CAMB-75BD8/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > C18060T,G28514T +B.1.103 47 > C241T,C3037T,C14408T,A23403G > C25665T,G28325T +B.1.378 49 > C241T,C3037T,C14408T,A23403G > G3871T +B.1.139 USA/WI-UW-558/2020|MT750137.1|20-06-25 > C241T,C3037T,C14408T,A23403G > A696C +B.1.350 53 > C241T,C3037T,C14408T,A23403G > G25563T +B.1.221.1 269 > C241T,C3037T,C14408T,A23403G > C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.222 Scotland/GCVR-172150/2020|20-03-30 > C241T,C3037T,C14408T,A23403G > C1545T,C22879A +B.1.379 England/BRIS-122C4F/2020|20-04-02 > C241T,C3037T,C14408T,A23403G > A11782G,G22203T,G27754T +B.1.182 275 > C241T,C3037T,C14408T,A23403G > A20268G +B.1.5 341 > C241T,C3037T,C14408T,A23403G > C15324T +B.1.215 Scotland/GCVR-173C30/2020|20-04-07 > C241T,C3037T,C14408T,A23403G > G3831A,T7441C +20E.EU1 361 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.177.14 361 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.179 England/ALDP-4A2A77/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > C7834T,C16997T,G25429T +B.1.81 England/BRIS-12468B/2020|20-04-09 > C241T,C3037T,C14408T,A23403G > C1909T,T27576C +B.1.201 England/NORW-E9DF7/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > C2940T,C7765T +B.1.395 398 > C241T,C3037T,C14408T,A23403G > C6990T +B.1.67 Wales/PHWC-29E43/2020|20-04-04 > C241T,C3037T,C14408T,A23403G > G9220A,T26512C +B.1.98 England/LOND-D3534/2020|20-03-27 > C241T,C3037T,C14408T,A23403G > C25350T,T27280C +B.1.76 England/LIVE-A63E5/2020|20-03-18 > C241T,C3037T,C14408T,A23403G > G680T,T17835C +B.1.376 Wales/PHWC-27461/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > C5506T,G14241T,C19374T +B.1.23 AUS/VIC1056/2020|MT451723.1|20-04-03 > C241T,C3037T,C14408T,A23403G > T7438C,A21944T,C29353T +B.1.153 England/LIVE-A65EF/2020|20-03-19 > C241T,C3037T,C14408T,A23403G > G10523C,G14580T +B.1.113 IND/GBRC209a/2020|MT664202.1|20-06-11 > C241T,C3037T,C14408T,A23403G > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,G25563T,C29750T +B.1.70 Scotland/CVR30/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > C1884T,T26497C +B.1.145 IND/GBRC99/2020|MT509504.1|20-05-06 > C241T,C3037T,C14408T,A23403G > G4866T,C14425A,A21511G +B.1.197 AUS/VIC1239/2020|MT451821.1|20-04-02 > C241T,C3037T,C14408T,A23403G > C6723T,T26094C,G28476T +B.1.143 IND/GBRC128/2020|MT539172.1|20-05-02 > C241T,C3037T,C14408T,A23403G > C4084T,G5572T +B.1.187 POL/PL_MCB_75/2020|MW273857.1|20-04-16 > C241T,C3037T,C14408T,A23403G > A544G,C17104T +B.1.414 Netherlands/NA_302/2020|LR878041.1|20-04-01 > C241T,C3037T,C14408T,A23403G > A3058G,G20275A +B.1.206 USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 > C241T,C3037T,C14408T,A23403G > G2282A,T9742C,C17639T,G20160T +B.1.69 423 > C241T,C3037T,C14408T,A23403G > C23422T,T23849C,C29686T +20B 426 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C +B.1.195 England/ALDP-BCA4B0/2020|20-11-23 > C241T,C3037T,C14408T,A23403G > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 USA/WA-S1222/2020|MT821613.1|20-05-08 > C241T,C3037T,C14408T,A23403G > C186T,C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.18 England/LIVE-9D7D6/2020|20-04-15 > G29711T > C1218T,C27493T,G27806T +B.13 USA/WI-UW-314/2020|MT706422.1|20-04-16 > G29711T > A4838G,C7420T,C14937T,C20148T,G25907T +B.45 Scotland/CVR780/2020|20-03-27 > C28854T > C5997T,C12710T +B.12 Japan/TKYE63557_2020/2020|LC581365.1|20-03 > C28854T > C11752T,C25665T,C26447T,A27700G,T28854C,T28912C +B.6.6 MYS/188407/2020|MT372480.1|20-03-18 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T,T25473C +A.2 682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.4 USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 > C8782T,T28144C > G16381A,T17877C,G25500T,C25854T,G28878A,G29742A +A.3 697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.5 AUS/VIC1878/2020|MT745600.1|20-03-29 > G1397A,T28688C,G29742T > C1076T,A28955T +B.37 13 > C14805T,G26144T > T17247C > C8078T +B.32 Scotland/CVR44/2020|20-03-13 > C14805T,G26144T > T17247C > G443A,A1587G +B.34 Scotland/CVR207/2020|20-03-18 > C14805T,G26144T > T17247C > C988T,G12832A +B.1.391 England/CAMB-76515/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25429T > C16289T,T25429G +B.1.104 England/LEED-2A8D10/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G25429T > C13730T,C25916T +B.1.254 35 > C241T,C3037T,C14408T,A23403G > G25429T > A10874G,C25916T,T26677C +B.1.79 38 > C241T,C3037T,C14408T,A23403G > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 Scotland/CVR1519/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25429T > A6441G,A28841G +B.1.392 England/NORW-E8C37/2020|20-04-13 > C241T,C3037T,C14408T,A23403G > G25429T > C3602T,C11460T,A24232G +B.1.252 43 > C241T,C3037T,C14408T,A23403G > G25429T > G1589A,G29474T +B.1.249 England/PHEC-127E8/2020|20-03-28 > C241T,C3037T,C14408T,A23403G > G25429T > G21538T +B.1.110 54 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T +20C 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.371 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.440 211 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T +B.1.419 England/CAMB-79ECC/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > A20268G > A10323G,G21778A +B.1.416.1 England/QEUH-963433/2020|20-08-10 > C241T,C3037T,C14408T,A23403G > A20268G > C2706T,C5339T,C25731T,C28833T +B.1.258 322 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C +B.1.210 IND/GBRC174b/2020|MT607610.1|20-06-05 > C241T,C3037T,C14408T,A23403G > C15324T > C3634T,C22444T,C28854T +B.1.178 France/10036BG/2020|MT470106.1|20-03 > C241T,C3037T,C14408T,A23403G > C15324T > G28202A +B.1.213 POL/PL_MCB_97/2020|MW273879.1|20-05-10 > C241T,C3037T,C14408T,A23403G > C15324T > C2570T,A7031G,G13617T +B.1.209 348 > C241T,C3037T,C14408T,A23403G > C15324T > G19542T,G20679A,T27576G +B.1.149 England/QEUH-990752/2020|20-08-29 > C241T,C3037T,C14408T,A23403G > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 350 > C241T,C3037T,C14408T,A23403G > C15324T > C15277T +B.1.218 Switzerland/240009/2020|LR880588.1|20-08-07 > C241T,C3037T,C14408T,A23403G > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 355 > C241T,C3037T,C14408T,A23403G > A26530G > G11596T +B.1.128 356 > C241T,C3037T,C14408T,A23403G > A26530G > C8293T,T18488C,T24739C +B.1.205 PER/covper091/2020|MW030227.1|20-03-17 > C241T,C3037T,C14408T,A23403G > A26530G > C15277T,A21917G +B.1.97 England/CAMB-737D6/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > A26530G > A2775G,G4255T,C6861T,C13568T,A20355G +B.1.177.11 Scotland/QEUH-9D11C0/2020|20-09-16 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > T4195A,C10977T,C24334T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 366 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T +B.1.177.23 Switzerland/270068/2020|LR882987.1|20-09-02 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C13671T,C14805T,G17058T,G17278T,A20284T,T20285C,A27755T +B.1.177.17 England/ALDP-9E75E9/2020|20-09-25 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > A408G,G2764T,C22088T,C29686T +B.1.177.9 Wales/PHWC-4815AA/2020|20-10-13 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C12049T,G21800T,A22053C,G22346T +B.1.35 Wales/PHWC-16930B/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > C6990T > C3264T,C29200T +B.1.207 USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 > C241T,C3037T,C14408T,A23403G > A187G > A10770G,C16017T,T27212C,G27561T +B.1.198 England/BRIS-128DCE/2020|20-04-14 > C241T,C3037T,C14408T,A23403G > A187G > C12213T,C19066A +B.1.1.119 427 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A +A.5 679 > C8782T,T28144C > A23403G,C26088T > G9928T,G23403A +A.10 680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +B.1.110.3 57 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > C601T,G12832T,G27915A +B.1.110.1 CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G1319A,G2945A,C10156T,T17208C +B.1.110.2 England/LEED-2A87C7/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G3230A,C23453T +B.1.485 USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T20037C,G28073T +B.1.22 67 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 68 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18555T,C28892T +B.1.491 72 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A3103C,C5893T,G24368T,A28117T +B.1.489 Wales/PHWC-2E0A2/2020|20-04-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18568T,G24368T,C24621T +B.1.333 USA/WA-S2746/2020|MT947577.1|20-07-19 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 USA/UT-05590/2020|MW084605.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A2151G,G19542T,C23551T,C28821A +B.1.310 Netherlands/NA_588/2020|LR883860.1|20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18281A,A20742G,A20755C,G25784T +B.1.346 USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 USA/CA-CZB-1793/2020|MT750334.1|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C379A,A20503G +B.1.521 108 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T +B.1.294 USA/WI-UW-1119/2020|MT929068.1|20-07-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A19899T,A21464G +B.1.39 123 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8788C,G26951A +B.1.324 USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7528T,G8213A +B.1.328 USA/MD-MDH-0071/2020|MT827237.1|20-05-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C775T,C23683T,C27923T,G28975T +B.1.341 USA/WA-QDX-235/2020|MT806806.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12557C,A23534T +B.1.332 127 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1917T +B.1.325 USA/UT-QDX-2224/2020|MW191025.1|20-03-13 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C23191T,A25910C +B.1.411 134 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T +B.1.323 USA/MN-MDH-1596/2020|MT997714.1|20-05-12 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T9070C,C20325T +B.1.356 England/LIVE-A91F7/2020|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T13006C,C19186T,C25688T +B.1.268 146 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G3892T +B.1.287 USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C16428T,C20555T,C21772T +B.1.38 USA/MN-MDH-1464/2020|MT919997.1|20-03-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C3044T,G25523T,T27869C +B.1.348 152 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 USA/WA-UW-6327/2020|MT412324.1|20-04-02 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5240G,C26625T +B.1.360 154 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27847T +B.1.366 USA/TX-QDX-261/2020|MT806804.1|20-05-01 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8041C,C18029T,G22225T +B.1.363 USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C335T,G526C,T16425G +B.1.305 USA/WI-UW-994/2020|MT846680.1|20-07-20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.519 England/BRIS-127AD7/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G3638T,G28808T,G29434C,G29705T +B.1.304 USA/WI-UW-522/2020|MT750102.1|20-06-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 USA/DC-HP00089/2020|MT509482.1|20-03-31 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9510T,C11919T +B.1.313 USA/IL-UW-1065/2020|MT929017.1|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5183T,G28878T +B.1.331 164 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25976A +B.1.165 165 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7851T,C20233T +B.1.338 USA/WA-QDX-2548/2020|MW191307.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25572T,G29747T +B.1.340 USA/COVID20-1144/2020|MW067817.1|20-07-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,T25577G,A28715T +B.1.444 USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G26730T,G27955A,C28854T +B.1.166 172 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1887T +B.1.120 Wales/PHWC-26B12/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C829T,G28371T +B.1.319 USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T3037C,C10851T +B.1.487 USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1734T,G12160T,C23664T +B.1.355 USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.513 Northern_Ireland/NIRE-1021DD/2020|20-03-14 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A6360G,G20709T +B.1.168 Scotland/EDB6052/2020|20-05-08 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18213T,A18818G +B.1.312 184 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9286T,G28899C +B.1.329 B90|LR898037.1|? > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C6406T,G18972A,A21360C +B.1.115 ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G7295T,C28290T +B.1.276 USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G26233T,C27881T +B.1.37 USA/TX-CDC-3009/2020|MT512440.1|20-03-10 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T9708C,C10712T +B.1.13 England/BRIS-130015/2020|20-04-11 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C6361T,C14786T,G20578T +B.1.479 204 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G10631T +B.1.277 Wales/PHWC-2AF12/2020|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C19884T,C26447A +B.1.474 207 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 IHUCOVID-0428|LR794641.1|? > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C6401T,T10480C,C13458T,C20946T +B.1.158 USA/WA-S3458/2020|MW494078.1|20-12-07 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T2300C,C3535T,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 210 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T17838C,G26450T +B.1.442 USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C27416T,G28086T +B.1.112 USA/UT-03892/2020|MT711875.1|20-04-13 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C683T,A6512C +B.1.163 USA/CA-CZB-1414/2020|MT628125.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > G10793T,C29311T +B.1.124 USA/WA-S1281/2020|MT821642.1|20-05-12 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A2161G,G11417T,C16376T +B.1.162 USA/WI-UW-288/2020|MT706396.1|20-04-08 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9195T,T15354C,C21855T +B.1.385 USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 England/ALDP-5D3DEC/2020|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1154G,G29474T +B.1.245 USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1096G,C1420T,G14874T +B.1.9.1 Scotland/EDB5108/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C2113T,C7765T,C17690T,T24923C +B.1.436 265 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9967T,A11246T,A23949G,C29013T +B.1.232 Scotland/EDB3341/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G27987T +B.1.402 USA/CA-CZB-11521/2020|MW276549.1|20-07-18 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4633T,T14643C,C22482T,G27506T +B.1.229 284 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7798T +B.1.421 286 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T +B.1.235 Scotland/EDB3662/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > T5507A,A19855G +B.1.403 USA/CA-CDC-4704/2020|MW001903.1|20-06-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4596A,G19086T,C23114T +B.1.231 England/OXON-B1781/2020|20-05-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C1714T,C27213T +B.1.405 USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G208T,G23522A,A25747C +B.1.447 297 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.234 USA/WI-UW-1288/2020|MW035458.1|20-09-02 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C884T,G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 303 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.258.10 England/ALDP-A2FCA3/2020|20-10-05 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > T7919G,C20451T,G21770A,C24734T +B.1.177.25 380 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.20 England/ALDP-A68CF9/2020|20-10-12 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > G23311C > G6476T,C10626T +B.1.177.18 England/MILK-9F1898/2020|20-09-25 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > G23311C > C5239T,G25440T,C27752T +B.1.1.4 429 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C +B.1.1.8 446 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6573T,C25528T +B.1.1.131 England/PHEC-1B7C1/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18115T +B.1.1.125 Scotland/CVR3919/2020|20-06-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A22330G,T27264G +B.1.1.203 England/ALDP-9558ED/2020|20-06-12 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1800A,G2398A,C23854T,G25972A,G27842T +B.1.1.71 England/BRIS-12F78D/2020|20-03-10 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T11638C,C25584A +B.1.1.157 452 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C17678T +B.1.1.201 456 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 USA/MA-QDX-3180/2021|MW505247.1|21-01-05 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.172 USA/CA-CZB-1885/2020|MT750387.1|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4711C,A6709G,C17125T +B.1.1.192 USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C673T +B.1.1.174 USA/CA-CZB-13945/2020|MW565647.1|20-06-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G443A,T6579C,G28378T +B.1.1.194 England/OXON-AEBC7/2020|20-04-12 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,G24781T,G29706T +B.1.1.38 Wales/PHWC-164485/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9438T,A16653G,G29777T +B.1.1.155 England/ALDP-51F142/2020|20-06-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 England/ALDP-49E391/2020|20-05-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3170T,C6336T,T26260G,C27673T +B.1.1.160 Northern_Ireland/NIRE-10677D/2020|20-05-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C10376T,G18148A,C26208T +B.1.1.165 475 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 476 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T +B.1.1.255 England/ALDP-6839B9/2020|20-07-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T,A27691T +B.1.1.180 USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18652T,T22843C +B.1.1.55 England/NOTT-111117/2020|20-05-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 England/ALDP-68EFBC/2020|20-07-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T13827C,G18756T,C23430T +B.1.1.275 495 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.81 498 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T,C19366T +B.1.1.1 499 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 DK/KL14_Farm1/2020|MT919536.1|20-06-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 511 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.292 513 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3373A +B.1.1.114 521 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T +B.1.1.314 542 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C +B.1.1.98 551 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 Scotland/CVR3185/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C16946T,G26615T +B.1.150 England/BRIS-127A40/2020|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2659T,C17249T,G17722T +B.1.1.164 England/EXET-136ED9/2020|20-04-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2164A,C8733T +B.1.1.97 564 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 England/MILK-95862C/2020|20-06-11 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T,G28557T +B.1.1.237 566 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T +B.1.1.86 570 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.235 572 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C +B.1.1.134 Wales/PHWC-162E7A/2020|20-05-19 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C5497T,C6582T +B.1.1.37 England/ALDP-71D072/2020|20-07-01 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21637T,T26156C,A28169G +B.1.1.151 583 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T +B.1.1.148 England/PHEC-20B81/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C20474T +B.1.1.12 England/MILK-9570D4/2020|20-06-10 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3163C,C7768T +B.1.1.229 DV_IZSPB_236_S50|LR992121.1|20-08-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 England/ALDP-9D8FFC/2020|20-09-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T,T20613C +B.1.1.168 598 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.239 England/LIVE-9BC33/2020|20-04-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11620T +B.1.1.92 England/ALDP-5A2A49/2020|20-06-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3154C,C18981T +B.1.1.26 609 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A +B.1.1.116 USA/WA-S2573/2020|MT831840.1|20-06-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 England/ALDP-9BEB16/2020|20-09-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,G14428T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.10 616 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 618 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 618 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 621 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T +B.1.1.217 625 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19488T +B.1.1.96 628 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 Scotland/EDB300/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2399T,C15240T +B.1.1.178 England/CAMB-1AA438/2020|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.280 England/MILK-9C4087/2020|20-09-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T1543A,C1938T,T4369C,T22020C,C27911T +B.1.1.56 England/PHEC-13ADF/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.132 USA/CA-CZB-2184/2020|MW035923.1|20-05-26 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21205T,G21255C,G28960T +B.1.1.266 Scotland/QEUH-94375E/2020|20-08-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G25785T,G26152T,C27532T,G28321T,C29614T +B.1.1.72 641 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.169 644 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.111 648 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C,C28720T +B.1.1.185 Netherlands/NA_359/2020|LR883961.1|20-04-07 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C7095T,C13502T,A16179G +B.1.1.13 England/CAMB-1AE7FF/2020|20-04-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G4207T,A4208C,C6033T,G11842T +B.1.359 USA/NY-QDX-1993/2020|MW190794.1|20-03-18 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G28376T +B.1.493 89 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G26020T +B.1.496 90 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.494 USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C13252T +B.1.497 103 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +20G 109 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 109 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 USA/MN-QDX-981/2020|MW065078.1|20-03-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C28833T +B.1.336 USA/CA-QDX-2685/2020|MW191430.1|20-03-17 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C9967T,G17590T +B.1.450 117 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G17808T +B.1.370 118 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C24378T +B.1.423 USA/IL-UW-1064/2020|MT929016.1|20-07-26 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 Scotland/EDB2451/2020|20-04-23 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10582T > C1076T,T10963A +B.1.367 Switzerland/240029/2020|LR880608.1|20-08-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,T27622C,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.281 BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C2937T,C21310A +B.1.465 England/SHEF-10B22B9/2020|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > T241C,G3482A,A8821G,C15752T,G24197T,T26066C +B.1.454 IND/GBRC-366a/2020|MT951170.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C26058T,G28851T +B.1.468 220 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T +B.1.36 223 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T +20A.EU2 240 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.160 240 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 243 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.471 England/QEUH-96A29C/2020|20-08-13 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C15654T,C16915T,G21204T,T24202C,G28899T,G29692T +B.1.258.4 England/MILK-A474DA/2020|20-10-06 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > C16394T,C22127T,G23876A,G25947T,C29274T > A6659G,G25218T +B.1.258.5 England/QEUH-AA0035/2020|20-10-20 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > C16394T,C22127T,G23876A,G25947T,C29274T > T8110C,G11417T +B.1.177.21 England/ALDP-9BE8B5/2020|20-09-09 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > T16242A,G28745A +B.1.177.22 369 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T +B.1.177.2 England/ALDP-9BECB9/2020|20-09-10 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > T14721C,C23029T,T25519G +B.1.177.3 England/MILK-9A9D09/2020|20-09-01 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > A1230G,G6344T +B.1.177.4 England/CAMC-AEA62E/2020|20-10-25 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > C66T,G10870T,A11781G,C18329T,C25614T +B.1.1.74 England/QEUH-7A4BBB/2020|20-07-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C2511T,G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 USA/WA-S1922/2020|MT831459.1|20-06-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G242T,C12528A,C18086T +B.1.1.290 USA/WA-S1775/2020|MT834200.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G13513A,C28256T,C29784T +R.1 England/ALDP-B82A0D/2020|20-11-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C4456T,C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +R.2 443 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T +20J/501Y.V3 USA/MD-MDH-0841/2021|MW621433.1|21-01-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > T733C,C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,T26149C,G28167A,C28512G,A28877T,G28878C +B.1.1.251 England/NORW-EE34B/2020|20-03-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > G18315A,C24904T,T25088G +20D 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.284 Japan/TKYE627000_2020/2020|LC593811.1|20-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T4346C,C7728T,C9286T,C10376T,C14708T,C28725T,G29692T +B.1.1.303 England/QEUH-96E605/2020|20-08-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C2841T,G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.113 USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > A11348G,G28690T +B.1.1.179 IND/GBRC455a/2020|MW600436.1|20-12-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G160T,T682C,C900T,G3259T,C4048T,C5700A,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.1.285 USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C823T,A11023G +B.1.1.214 Japan/TKYE622411_2020/2020|LC593808.1|20-07 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T,G29773T +B.1.1.272 England/MILK-A18C8F/2020|20-10-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 Wales/PHWC-30957/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T11654C,G22627A,G28628T +B.1.1.283 LC573289.2|20-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G2305T,G25563C,G28178T +B.1.1.181 TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C2509T,G5015A,C14724T,G24262T,G27703T +B.1.1.33 543 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.279 England/BRIS-125D67/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > C6347T,G18859T +B.1.1.149 569 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.146 England/CAMC-947392/2020|20-07-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C > C7843T,G15438T,C25207T,T25949C,C28453T +B.1.1.308 England/CAMC-A40F67/2020|20-10-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G,A12529G +B.1.1.309 586 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 Northern_Ireland/NIRE-FB369/2020|20-08-31 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > A6900G,G25456T +B.1.1.260 England/LEED-2AA394/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G11230T,C20941T,G23587C +B.1.1.259 592 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 England/ALDP-5D52BE/2020|20-06-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > T13794G,T28494C +B.1.1.299 England/ALDP-4A2BFC/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A20826G,A23207G +B.1.1.301 England/ALDP-49F5B8/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A19650G,T21368C +B.1.1.233 USA/WA-S2598/2020|MT831859.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T,G29254T +B.1.1.65 USA/WA-S820/2020|MT641503.1|20-04-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > A5538T,G17261A,T25783C +L.2 617 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +20F 623 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 623 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.218 England/CAMC-947259/2020|20-07-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +A.2.3 Scotland/CVR2435/2020|20-04-14 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C4540T,C28657T > C15274T,C25714T,C26029A +A.2.2 AUS/VIC995/2020|MT451680.1|20-03-31 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C4540T,C28657T > G17632A,C28311T +B.1.507 USA/VA-DCLS-1147/2020|MT992749.1|20-04 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G,G22487C +B.1.499 USA/NY-QDX-2365/2020|MW191144.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 USA/CA-CZB-2139/2020|MT750510.1|20-05-21 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C5540A,C19145T +B.1.501 USA/NC-QDX-174/2020|MT786825.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,C18693A,G26828T +B.1.505 England/MILK-6166F0/2020|20-07-05 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T22912G,T24805C,C26270T +B.1.282 England/ALDP-955F15/2020|20-06-08 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G25793A,G28907T +B.1.477 England/ALDP-94EB75/2020|20-06-17 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.36.20 221 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.21 England/PHEC-149F0D/2020|20-11-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C1122T,T4057C,G6077T,A10323G,G13858T,G21724T,C27092T,C27434T,G28975T +B.1.36.23 England/MILK-970CE0/2020|20-08-18 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,G26389T,T26876C,C28311T,A28900C +B.1.36.24 England/SHEF-10CC3AA/2020|20-12-17 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C1420T,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 England/MILK-566C5A/2020|20-06-12 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 237 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.177.7 373 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T > C15480T +B.1.177.8 Scotland/QEUH-9B75D3/2020|20-09-04 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T > G8179T,G29778T +B.1.1.289 Wales/PHWC-260AA/2020|20-03-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G25552T > T7168C,G11801A +B.1.1.2 434 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +C.5 Switzerland/300433/2020|LR898634.1|20-09-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,G27382T,T27808C +C.4 SRB/NS19622-16-06/2020|MW327528.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.36.1 England/CAMC-A65DDB/2020|20-10-11 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,C25349A,G25947C,G26062T +B.1.36.28 England/QEUH-9F3FDD/2020|20-09-24 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 England/QEUH-96A85E/2020|20-08-14 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,T23986C,C29555T +B.1.36.27 228 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +N.1 USA/MA_MGH_00693/2020|MT520290.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,T28360C,C29769T +N.4 CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G,C14805T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_18_path_mutations.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,442 @@ +sample_id path_from_root +England/BRIS-1853249/2020|20-04-02 (1) > C24034T (2) > C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 (1) > C24034T (2) > +Wales/PHWC-25B04/2020|20-03-24 (1) > C875T (3) > A20637G +Wales/LIVE-A6831/2020|20-03-16 (1) > C875T (3) > T14859C +Scotland/EDB354/2020|20-03-30 (1) > C7423T,A29780C +England/SHEF-BFF8B/2020|20-03-25 (1) > C20270T (5) > C1473T +England/SHEF-BFFC7/2020|20-03-25 (1) > T4949C (8) > G28027T +England/PHEC-1E01E/2020|20-04-03 (1) > T4949C (8) > C22445T +DP0476/2020|LC571003.1|20-02-16 (1) > C29635T (9) > C29592T +DP0191/2020|LC570980.1|20-02-15 (1) > C29635T (9) > A3854G +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 (1) > A14940G (660) > C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 (1) > A14940G (660) > A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 (1) > T514C,C22033A +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 (1) > C11050T,A12557G,C24904T,A27359G +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 (1) > T15867A,C25692T +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 (1) > G7273A,C10277T +USA/CA-QDX-33/2020|MT614459.1|20-03-15 (1) > C6312A,C13730T,C23929T,C28311T (674) > C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 (1) > C6312A,C13730T,C23929T,C28311T (674) > C11455T +England/PHEC-1A601/2020|20-03-04 (1) > G1397A,T28688C,G29742T (699) > A19526G +England/ALDP-9EE3AC/2020|20-05-06 (1) > C14805T,G26144T (10) > G20991T,C23707T +England/CAMB-8042A/2020|20-04-10 (1) > C14805T,G26144T (10) > A2480G,C2558T,A4015T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 (1) > C14805T,G26144T (10) > G5572T,C28311T +England/LIVE-9D7D6/2020|20-04-15 (1) > G29711T (667) > C1218T,C27493T,G27806T +USA/WI-UW-314/2020|MT706422.1|20-04-16 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T,G25907T +Scotland/CVR780/2020|20-03-27 (1) > C28854T (671) > C5997T,C12710T +Japan/TKYE63557_2020/2020|LC581365.1|20-03 (1) > C28854T (671) > C11752T,C25665T,C26447T,A27700G,T28854C,T28912C +MYS/188407/2020|MT372480.1|20-03-18 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T,T25473C +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > +USA/COVID20-0008/2020|MT764174.1|20-03-10 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > +AUS/VIC1878/2020|MT745600.1|20-03-29 (1) > G1397A,T28688C,G29742T (699) > C1076T,A28955T +England/SHEF-BFF21/2020|20-03-25 (1) > C20270T (5) > A18671G,A29683T +Switzerland/100159/2020|LR884273.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > C16995T +England/LOND-126031F/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > A20511G +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > +Scotland/CVR44/2020|20-03-13 (1) > C14805T,G26144T (10) > T17247C (11) > G443A,A1587G +Scotland/CVR207/2020|20-03-18 (1) > C14805T,G26144T (10) > T17247C (11) > C988T,G12832A +Spain/R11/2020|LR884126.1|20-03-06 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > +Spain/R10_33/2020|LR884127.1|20-03-02 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > T25979G +Scotland/EDB5629/2020|20-03-24 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G9928T,G23403A (679) > G27870T +Scotland/EDB5040/2020|20-04-02 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G9928T,G23403A (679) > C593T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 (1) > C8782T,T28144C (676) > G16381A,T17877C,G25500T,C25854T,G28878A,G29742A +England/BRIS-125347/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G7042T,G8861T +IND/763/2020|MT577009.1|20 (1) > C241T,C3037T,C14408T,A23403G (28) > C4809T +England/CAMB-75BD8/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C18060T,G28514T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C25665T,G28325T (47) > C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C25665T,G28325T (47) > G16075T +USA/WI-UW-26/2020|MT706147.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G3871T (49) > A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G3871T (49) > C19862T +USA/WI-UW-558/2020|MT750137.1|20-06-25 (1) > C241T,C3037T,C14408T,A23403G (28) > A696C +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1997T +Scotland/GCVR-172150/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C1545T,C22879A +England/BRIS-122C4F/2020|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > A11782G,G22203T,G27754T +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > G28881A +USA/WI-UW-37/2020|MT706158.1|20-03-22 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G11417T +Scotland/GCVR-173C30/2020|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G3831A,T7441C +England/ALDP-4A2A77/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > C7834T,C16997T,G25429T +England/BRIS-12468B/2020|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > C1909T,T27576C +England/NORW-E9DF7/2020|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C2940T,C7765T +Wales/PHWC-27B20/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > T22435C +Wales/PHWC-2624A/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > C27476T +Wales/PHWC-29E43/2020|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G9220A,T26512C +England/LOND-D3534/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > C25350T,T27280C +England/LIVE-A63E5/2020|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G680T,T17835C +Wales/PHWC-27461/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > C5506T,G14241T,C19374T +AUS/VIC1056/2020|MT451723.1|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > T7438C,A21944T,C29353T +England/LIVE-A65EF/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G10523C,G14580T +IND/GBRC209a/2020|MT664202.1|20-06-11 (1) > C241T,C3037T,C14408T,A23403G (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,G25563T,C29750T +Scotland/CVR30/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > C1884T,T26497C +IND/GBRC99/2020|MT509504.1|20-05-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G4866T,C14425A,A21511G +AUS/VIC1239/2020|MT451821.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C6723T,T26094C,G28476T +IND/GBRC128/2020|MT539172.1|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C4084T,G5572T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > A544G,C17104T +Netherlands/NA_302/2020|LR878041.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A3058G,G20275A +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G2282A,T9742C,C17639T,G20160T +Scotland/CVR129/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > C23422T,T23849C,C29686T (423) > G29227A +Scotland/CVR52/2020|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > C23422T,T23849C,C29686T (423) > C25667T +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > T241C +England/ALDP-BCA4B0/2020|20-11-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +USA/WA-S1222/2020|MT821613.1|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > C186T,C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +England/CAMB-76515/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C16289T,T25429G +England/LEED-2A8D10/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C13730T,C25916T +Scotland/CVR2381/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > C1848T +Scotland/CVR2197/2020|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > G21776T +Scotland/CVR1519/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A6441G,A28841G +England/NORW-E8C37/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C3602T,C11460T,A24232G +Wales/PHWC-3122E/2020|20-04-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G1589A,G29474T (43) > A22457G +Wales/PHWC-1645EC/2020|20-05-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G1589A,G29474T (43) > A11438G +England/PHEC-127E8/2020|20-03-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G21538T +England/MILK-9A8AB8/2020|20-08-31 (1) > C241T,C3037T,C14408T,A23403G (28) > C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (269) > C222T +IND/GBRC174b/2020|MT607610.1|20-06-05 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C3634T,C22444T,C28854T +France/10036BG/2020|MT470106.1|20-03 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G28202A +POL/PL_MCB_97/2020|MW273879.1|20-05-10 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C2570T,A7031G,G13617T +Scotland/CVR3629/2020|20-05-24 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > G18380T +Scotland/QEUH-5456F9/2020|20-05-13 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > C6606T +England/QEUH-990752/2020|20-08-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +AUS/VIC38/2020|MT450953.1|20-03-11 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C15277T (350) > C10350T +IHUCOVID-0133|LR794459.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C15277T (350) > C8394T +Switzerland/240009/2020|LR880588.1|20-08-07 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +USA/MN67-MDH67/2020|MT911566.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > G11596T (355) > +Netherlands/NA_292/2020|LR878032.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > G11596T (355) > G20568A +Switzerland/101166/2020|LR824397.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C17118T +PER/covper091/2020|MW030227.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > C15277T,A21917G +England/CAMB-737D6/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > A2775G,G4255T,C6861T,C13568T,A20355G +Wales/PHWC-16930B/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > C3264T,C29200T +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > A187G (409) > A10770G,C16017T,T27212C,G27561T +England/BRIS-128DCE/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > A187G (409) > C12213T,C19066A +Scotland/CVR2435/2020|20-04-14 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C4540T,C28657T (685) > C15274T,C25714T,C26029A +AUS/VIC995/2020|MT451680.1|20-03-31 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C4540T,C28657T (685) > G17632A,C28311T +England/CAMB-1AC7D3/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A10874G,C25916T,T26677C (35) > A13863G +England/LEED-2A87C7/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G3230A,C23453T +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24381T (62) > +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24381T (62) > C23718T +USA/VA-DCLS-0676/2020|MT911804.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/MI-QDX-476/2020|MW064508.1|20-03-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T20037C,G28073T +England/CAMB-7A7DF/2020|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > G8578A +Netherlands/NA_18/2020|LR878352.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > C23506T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > A6035G +Wales/PHWC-2E0A2/2020|20-04-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18568T,G24368T,C24621T +USA/WA-S2746/2020|MT947577.1|20-07-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +USA/UT-05590/2020|MW084605.1|20-06-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A2151G,G19542T,C23551T,C28821A +Netherlands/NA_588/2020|LR883860.1|20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G18281A,A20742G,A20755C,G25784T +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C379A,A20503G +USA/WI-UW-1119/2020|MT929068.1|20-07-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A19899T,A21464G +England/CAMB-7771E/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4586T +England/CAMB-7DC91/2020|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4321T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7528T,G8213A +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C775T,C23683T,C27923T,G28975T +USA/WA-QDX-235/2020|MT806806.1|20-04-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A12557C,A23534T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1917T (127) > C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1917T (127) > G29431T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C23191T,A25910C +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T9070C,C20325T +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G3892T (146) > G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G3892T (146) > G20062T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C16428T,C20555T,C21772T +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C3044T,G25523T,T27869C +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > C13761T +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > A26864T +USA/WA-UW-6327/2020|MT412324.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5240G,C26625T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27847T (154) > A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27847T (154) > C6628T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8041C,C18029T,G22225T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C335T,G526C,T16425G +USA/WI-UW-994/2020|MT846680.1|20-07-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +USA/WI-UW-522/2020|MT750102.1|20-06-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T +USA/DC-HP00089/2020|MT509482.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9510T,C11919T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5183T,G28878T +USA/MI-QDX-620/2020|MW064645.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25976A (164) > G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25976A (164) > C18981T +England/BRIS-12D9F2/2020|20-05-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A20262G +England/BRIS-12B156/2020|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A13707G +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25572T,G29747T +USA/COVID20-1144/2020|MW067817.1|20-07-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,T25577G,A28715T +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G26730T,G27955A,C28854T +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1887T (172) > G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1887T (172) > A27979T +Wales/PHWC-26B12/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C829T,G28371T +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T3037C,C10851T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1734T,G12160T,C23664T +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T +Northern_Ireland/NIRE-1021DD/2020|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A6360G,G20709T +Scotland/EDB6052/2020|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G18213T,A18818G +England/CAMB-7FBCF/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A12556G +England/CAMB-784BC/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A13852G +B90|LR898037.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C6406T,G18972A,A21360C +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G7295T,C28290T +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G26233T,C27881T +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T9708C,C10712T +England/BRIS-130015/2020|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C6361T,C14786T,G20578T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G10631T (204) > +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G10631T (204) > G8131T +Wales/PHWC-2AF12/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C19884T,C26447A +321398|LR962930.1|20-10-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > C22208T +England/QEUH-B8053B/2020|20-11-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > G22225T +IHUCOVID-0428|LR794641.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C6401T,T10480C,C13458T,C20946T +USA/WA-S3458/2020|MW494078.1|20-12-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T2300C,C3535T,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +Switzerland/100363/2020|LR884411.1|20-03-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C27416T,G28086T +USA/UT-03892/2020|MT711875.1|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C683T,A6512C +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > G10793T,C29311T +USA/WA-S1281/2020|MT821642.1|20-05-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A2161G,G11417T,C16376T +USA/WI-UW-288/2020|MT706396.1|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C9195T,T15354C,C21855T +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T +England/ALDP-5D3DEC/2020|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A1154G,G29474T +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A1096G,C1420T,G14874T +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > C10741T +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C9967T,A11246T,A23949G,C29013T +England/QEUH-9C7EA8/2020|20-09-11 (1) > C241T,C3037T,C14408T,A23403G (28) > C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (269) > G2407T,T2924C,G11761T +Scotland/EDB3341/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G27987T +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T,G27506T +England/LOND-D5444/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G7798T (284) > C12789T +Scotland/CVR3238/2020|20-04-26 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G7798T (284) > G22992T +Scotland/EDB3662/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > T5507A,A19855G +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C4596A,G19086T,C23114T +England/OXON-B1781/2020|20-05-04 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C1714T,C27213T +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > C24258T +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > +USA/WI-UW-1288/2020|MW035458.1|20-09-02 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C884T,G2258A,A6441G,C8140T,A9204G,C29445T +England/CAMC-94C02D/2020|20-07-15 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > C27371T +England/MILK-95DBDD/2020|20-06-20 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > A20667G +England/CAMB-79ECC/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > A10323G,G21778A +England/PHEC-152C73/2020|20-11-16 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C3426T,C19862T (362) > C21682T +Scotland/QEUH-9D11C0/2020|20-09-16 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > T4195A,C10977T,C24334T,G25049T,G25062T,C26151T,C28657T,C29366T +Switzerland/270068/2020|LR882987.1|20-09-02 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C13671T,C14805T,G17058T,G17278T,A20284T,T20285C,A27755T +GRC/202_32984/2020|MT459870.1|20-03-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +GRC/208_33922/2020|MT459876.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +England/PHEC-1B7C1/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C18115T +Scotland/CVR3919/2020|20-06-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A22330G,T27264G +England/ALDP-9558ED/2020|20-06-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,G2398A,C23854T,G25972A,G27842T +England/BRIS-12F78D/2020|20-03-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T11638C,C25584A +England/NORT-282972/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > +England/CAMB-80554/2020|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > T3745C +England/CAMC-94328A/2020|20-07-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +England/CAMC-9424A3/2020|20-07-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G,C17125T +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C673T +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G443A,T6579C,G28378T +England/OXON-AEBC7/2020|20-04-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9430T,G24781T,G29706T +Wales/PHWC-164485/2020|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,A16653G,G29777T +England/ALDP-51F142/2020|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T +England/ALDP-49E391/2020|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,T26260G,C27673T +Northern_Ireland/NIRE-10677D/2020|20-05-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,G18148A,C26208T +England/MILK-9705F4/2020|20-08-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > C15045T +England/ALDP-9B6440/2020|20-08-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > +Scotland/EDB6515/2020|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > +England/ALDP-6839B9/2020|20-07-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T,A27691T +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C18652T,T22843C +England/NOTT-111117/2020|20-05-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C +England/ALDP-68EFBC/2020|20-07-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T,C23430T +England/PHEC-16F19/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > C4570A +England/GSTT-265D4DF/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > +England/NORT-283BE4/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C24026T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T +England/BRIS-123EDF/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C2509T +England/BRIS-123F09/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C9118T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C3096T +England/LOND-D53CF/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G621A +USA/WA-S2724/2020|MT947562.1|20-07-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +USA/WA-S2728/2020|MT947566.1|20-07-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > +Scotland/CVR3185/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C16946T,G26615T +England/BRIS-127A40/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G2659T,C17249T,G17722T +England/EXET-136ED9/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G2164A,C8733T +England/ALDP-907D09/2020|20-06-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > C20320T +England/MILK-85E3E4/2020|20-07-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > G2144T +England/MILK-95862C/2020|20-06-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T,G28557T +England/PHEC-219E0/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T23227C +England/LEED-2AA59E/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C28969T +England/ALDP-95A754/2020|20-06-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > T20764C +England/ALDP-95CEA8/2020|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > C14931T +Wales/PHWC-162E7A/2020|20-05-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C5497T,C6582T +England/ALDP-71D072/2020|20-07-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,T26156C,A28169G +England/ALDP-954C6A/2020|20-06-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G27857T +England/PHEC-20B81/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C20474T +England/MILK-9570D4/2020|20-06-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3163C,C7768T +DV_IZSPB_236_S50|LR992121.1|20-08-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +England/ALDP-9D8FFC/2020|20-09-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T,T20613C +England/NORT-28B1EA/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > C27741T +England/NORT-28B28D/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > A8734G +England/LIVE-9BC33/2020|20-04-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C11620T +England/ALDP-5A2A49/2020|20-06-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3154C,C18981T +USA/WA-S1434/2020|MT821707.1|20-05-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C8802T +USA/WA-S2573/2020|MT831840.1|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G +England/ALDP-9BEB16/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,G14428T,T15156C,C20368T,C26527T,C29149T,G29239A +Scotland/CVR1557/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G23401T +Wales/PHWC-34610/2020|20-04-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G16014A +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C19273T +England/CAMB-82E1B/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8374T +SAU/KFSHRC44/2020|MT820480.1|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > +SAU/KAIMRC67/2020|MT820487.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > G29422T +Scotland/EDB300/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C2399T,C15240T +England/CAMB-1AA438/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T +England/MILK-9C4087/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,C1938T,T4369C,T22020C,C27911T +England/PHEC-13ADF/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C21205T,G21255C,G28960T +Scotland/QEUH-94375E/2020|20-08-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G25785T,G26152T,C27532T,G28321T,C29614T +England/CAMB-7C12A/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +England/CAMB-83348/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > T3127C +ZW-6983|LR963462.1|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > C10341T +ZW-6978|LR963455.1|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > A13833G +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C,C28720T +Netherlands/NA_359/2020|LR883961.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,C13502T,A16179G +England/CAMB-1AE7FF/2020|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,C6033T,G11842T +Scotland/EDB2049/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A10874G,C25916T,T26677C (35) > G25440A,G29745T (36) > T25916C +Scotland/EDB2100/2020|20-04-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A10874G,C25916T,T26677C (35) > G25440A,G29745T (36) > +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G1319A,G2945A,C10156T,T17208C +England/CAMB-83FBD/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A3103C,C5893T,G24368T,A28117T (72) > +England/CAMB-1AD004/2020|20-04-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A3103C,C5893T,G24368T,A28117T (72) > A28356G +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > C4012T +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > C8109T +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > T12925C +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T +KOR/YS006/2020|MW345824.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > C26261T +KOR/YS008/2020|MW345825.1|20-06-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > +USA/AK-PHL660/2020|MW173157.1|20-06-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > A16872C +USA/MN-QDX-981/2020|MW065078.1|20-03-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T,G17590T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C15352T +USA/UT-00495/2020|MT444543.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > T11131A +USA/IL-UW-1064/2020|MT929016.1|20-07-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +Scotland/EDB2451/2020|20-04-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T,T10963A +Switzerland/240029/2020|LR880608.1|20-08-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,T27622C,G27632T,C27804T,C28830A,G29402T,G29779T +England/RAND-12B3F28/2021|21-02-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T (134) > +England/RAND-12B3CF4/2021|21-02-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T (134) > +England/LIVE-A91F7/2020|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T13006C,C19186T,C25688T +England/BRIS-127AD7/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1968T,G3638T,G28808T,G29434C,G29705T +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T,C21310A +IND/GBRC-366a/2020|MT951170.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C26058T,G28851T +SAU/596/2020|MT755893.1|20-02-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > A23503G +England/TFCI-26FA9B7/2020|20-12-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > +England/MILK-B94ACC/2020|20-11-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > C15237T +Scotland/EDB5108/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T,T24923C +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T (286) > C16362T +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T (286) > G25775T +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G208T,G23522A,A25747C +England/QEUH-963433/2020|20-08-10 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C2706T,C5339T,C25731T,C28833T +England/MILK-BB0022/2020|20-11-18 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C3426T,C19862T (362) > C11050A (363) > +England/MILK-BB0031/2020|20-11-18 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C3426T,C19862T (362) > C11050A (363) > +England/PHEC-14E15D/2020|20-12-09 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > C20178T +England/PHEC-149635/2020|20-10-28 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > +England/ALDP-9E75E9/2020|20-09-25 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > A408G,G2764T,C22088T,C29686T +England/ALDP-A68CF9/2020|20-10-12 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > G23311C (386) > G6476T,C10626T +England/MILK-9F1898/2020|20-09-25 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > G23311C (386) > C5239T,G25440T,C27752T +Wales/PHWC-4815AA/2020|20-10-13 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C12049T,G21800T,A22053C,G22346T +England/QEUH-7A4BBB/2020|20-07-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C2511T,G3242A,G8120C,C21646T,A24205T,G28083T +USA/WA-S1922/2020|MT831459.1|20-06-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C12528A,C18086T +USA/WA-S1775/2020|MT834200.1|20-06-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G13513A,C28256T,C29784T +England/ALDP-B82A0D/2020|20-11-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C4456T,C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +England/BRIS-12A70A/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6573T,C25528T (446) > C21077T +England/CAMB-77F61/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6573T,C25528T (446) > G22299A +England/NORW-EE34B/2020|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > G18315A,C24904T,T25088G +Northern_Ireland/NIRE-FBB52/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T,C19366T (498) > C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T,C19366T (498) > C6114T +England/CAMB-81070/2020|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C4698T +Scotland/CVR41/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3373A (513) > C823T +England/QEUH-96E605/2020|20-08-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2841T,G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G,G28690T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T,A11023G +Japan/TKYE622411_2020/2020|LC593808.1|20-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C8917T,C18167T,G21518T,G28975T,G29773T +England/MILK-A18C8F/2020|20-10-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +Wales/PHWC-30957/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T11654C,G22627A,G28628T +LC573289.2|20-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G2305T,G25563C,G28178T +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,G5015A,C14724T,G24262T,G27703T +England/CAMB-74D5B/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > +England/BRIS-125D67/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C6347T,G18859T +England/ALDP-94D8F7/2020|20-06-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > A9997C +England/NOTT-111BFB/2020|20-05-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > G26426A +England/MILK-8664D7/2020|20-07-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G26918T,T29464C (572) > C29733T +England/CAMC-A40F67/2020|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G,A12529G +England/QEUH-9B6EAC/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > A29700G +England/NORT-2A4CAE/2020|20-09-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > C27945T +Northern_Ireland/NIRE-FB369/2020|20-08-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G,G25456T +England/LEED-2AA394/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,C20941T,G23587C +England/WSFT-25C13CB/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > +England/PORT-2F5D9C/2020|20-06-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > A5277G +England/ALDP-5D52BE/2020|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G,T28494C +England/ALDP-4A2BFC/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A20826G,A23207G +England/ALDP-49F5B8/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G,T21368C +USA/WA-S2598/2020|MT831859.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T,G29254T +USA/WA-S820/2020|MT641503.1|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,G17261A,T25783C +Netherlands/NA_436/2020|LR883367.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > C4824T +England/CAMC-B36516/2020|20-11-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C2918T +England/CAMC-B362D3/2020|20-11-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C29311T +England/MILK-B3A284/2020|20-11-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > C27046T +England/CAMC-B365AD/2020|20-11-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > T19232C +AUS/VIC13094/2020|MW185501.1|20-07-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > G6662A +England/CAMC-947259/2020|20-07-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +USA/COVID20-0537/2020|MT981422.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > C601T,G12832T,G27915A (57) > C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > C601T,G12832T,G27915A (57) > A28165G +USA/VA-DCLS-1147/2020|MT992749.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G,G22487C +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C5540A,C19145T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,C18693A,G26828T +England/MILK-6166F0/2020|20-07-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C66A,C4455T,C7768T,A8773G,C17304T,T22912G,T24805C,C26270T +USA/WI-UW-1194/2020|MT981478.1|20-08-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > G9928T,C10377T +England/ALDP-955F15/2020|20-06-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G25793A,G28907T +England/ALDP-94EB75/2020|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A +England/SHEF-10B22B9/2020|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > T241C,G3482A,A8821G,C15752T,G24197T,T26066C +Scotland/QEUH-A9E7BD/2020|20-10-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > A3120C +Scotland/EDB7778/2020|20-09-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > C28045T +England/MILK-970CE0/2020|20-08-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C6312T,C12513T,G14122T,A20559G,C23127T,G26389T,T26876C,C28311T,A28900C +England/SHEF-10CC3AA/2020|20-12-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > A749G,C1420T,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +England/MILK-566C5A/2020|20-06-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T +England/CAMC-C2CDFC/2020|20-12-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > T3366C +England/MILK-CAA0EE/2020|20-12-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > C28411T +England/QEUH-96A29C/2020|20-08-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C15654T,C16915T,G21204T,T24202C,G28899T,G29692T +England/ALDP-9BE8B5/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > T16242A,G28745A +Scotland/CVR4309/2020|20-09-14 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > C7471T +England/ALDP-9BECB9/2020|20-09-10 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1987G (376) > T14721C,C23029T,T25519G +England/MILK-9A9D09/2020|20-09-01 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1987G (376) > A1230G,G6344T +England/CAMC-AEA62E/2020|20-10-25 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1987G (376) > C66T,G10870T,A11781G,C18329T,C25614T +Wales/PHWC-260AA/2020|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > T7168C,G11801A +England/BRIS-185470D/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > +England/BRIS-12AF02/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > G27670T +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T (443) > C22264T +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T (443) > T27824C +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > T733C,C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,T26149C,G28167A,C28512G,A28877T,G28878C +England/CAMB-72B44/2020|20-03-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/CAMB-822D3/2020|20-04-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +Switzerland/300433/2020|LR898634.1|20-09-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,G27382T,T27808C +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3373A (513) > C2706T,G9968T,G16647T,T23480G (514) > +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3373A (513) > C2706T,G9968T,G16647T,T23480G (514) > +Japan/TKYE627000_2020/2020|LC593811.1|20-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T4346C,C7728T,C9286T,C10376T,C14708T,C28725T,G29692T +IND/GBRC455a/2020|MW600436.1|20-12-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G160T,T682C,C900T,G3259T,C4048T,C5700A,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C28969T +England/CAMC-947392/2020|20-07-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G26918T,T29464C (572) > C7843T,G15438T,C25207T,T25949C,C28453T +AUS/VIC11646/2020|MW155572.1|20-07-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > G6617T,C18555T,C22987T +England/CAMC-A65DDB/2020|20-10-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,C25349A,G25947C,G26062T +England/QEUH-9F3FDD/2020|20-09-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +England/QEUH-96A85E/2020|20-08-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > C7528T,T23986C,C29555T +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > C14724T +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > A6391G +England/PHEC-149F0D/2020|20-11-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C1122T,T4057C,G6077T,A10323G,G13858T,G21724T,C27092T,C27434T,G28975T +England/MILK-A230C1/2020|20-10-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (240) > A2175G +England/QEUH-A76C07/2020|20-10-12 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > G21777A +England/MILK-AC7997/2020|20-10-21 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > C125T +Scotland/QEUH-9B75D3/2020|20-09-04 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > G8179T,G29778T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,T28360C,C29769T +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G,C14805T +England/MILK-97356A/2020|20-08-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (240) > C15720T +England/ALDP-A2FCA3/2020|20-10-05 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C (322) > T7919G,C20451T,G21770A,C24734T +England/MILK-A474DA/2020|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C (322) > C16394T,C22127T,G23876A,G25947T,C29274T (330) > A6659G,G25218T +England/QEUH-AA0035/2020|20-10-20 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C (322) > C16394T,C22127T,G23876A,G25947T,C29274T (330) > T8110C,G11417T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_18_sample_names.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,441 @@ +England/BRIS-1853249/2020|20-04-02 +NPL/61-TW/2020|MT072688.1|20-01-13 +Wales/PHWC-25B04/2020|20-03-24 +Wales/LIVE-A6831/2020|20-03-16 +Scotland/EDB354/2020|20-03-30 +England/SHEF-BFF8B/2020|20-03-25 +England/SHEF-BFFC7/2020|20-03-25 +England/PHEC-1E01E/2020|20-04-03 +DP0476/2020|LC571003.1|20-02-16 +DP0191/2020|LC570980.1|20-02-15 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 +USA/DC-HP00063/2020|MT646075.1|20-03-13 +England/PHEC-1A601/2020|20-03-04 +England/ALDP-9EE3AC/2020|20-05-06 +England/CAMB-8042A/2020|20-04-10 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 +England/LIVE-9D7D6/2020|20-04-15 +USA/WI-UW-314/2020|MT706422.1|20-04-16 +Scotland/CVR780/2020|20-03-27 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 +MYS/188407/2020|MT372480.1|20-03-18 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 +USA/COVID20-0008/2020|MT764174.1|20-03-10 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 +AUS/VIC1878/2020|MT745600.1|20-03-29 +England/SHEF-BFF21/2020|20-03-25 +Switzerland/100159/2020|LR884273.1|20-03-16 +England/LOND-126031F/2020|20-03-15 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +Scotland/CVR44/2020|20-03-13 +Scotland/CVR207/2020|20-03-18 +Spain/R11/2020|LR884126.1|20-03-06 +Spain/LP19_4952/2020|LR884066.1|20-03-07 +Spain/R10_33/2020|LR884127.1|20-03-02 +Scotland/EDB5629/2020|20-03-24 +Scotland/EDB5040/2020|20-04-02 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 +England/BRIS-125347/2020|20-03-27 +IND/763/2020|MT577009.1|20 +England/CAMB-75BD8/2020|20-03-29 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 +USA/WI-UW-26/2020|MT706147.1|20-03-24 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 +USA/WI-UW-558/2020|MT750137.1|20-06-25 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 +Scotland/GCVR-172150/2020|20-03-30 +England/BRIS-122C4F/2020|20-04-02 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 +Switzerland/100198/2020|LR884312.1|20-03-17 +USA/WI-UW-37/2020|MT706158.1|20-03-22 +Scotland/GCVR-173C30/2020|20-04-07 +England/ALDP-4A2A77/2020|20-05-22 +England/BRIS-12468B/2020|20-04-09 +England/NORW-E9DF7/2020|20-05-02 +Wales/PHWC-27B20/2020|20-03-30 +Wales/PHWC-2624A/2020|20-03-27 +Wales/PHWC-29E43/2020|20-04-04 +England/LOND-D3534/2020|20-03-27 +England/LIVE-A63E5/2020|20-03-18 +Wales/PHWC-27461/2020|20-03-31 +AUS/VIC1056/2020|MT451723.1|20-04-03 +England/LIVE-A65EF/2020|20-03-19 +IND/GBRC209a/2020|MT664202.1|20-06-11 +Scotland/CVR30/2020|20-03-13 +IND/GBRC99/2020|MT509504.1|20-05-06 +AUS/VIC1239/2020|MT451821.1|20-04-02 +IND/GBRC128/2020|MT539172.1|20-05-02 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +Netherlands/NA_302/2020|LR878041.1|20-04-01 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 +Scotland/CVR129/2020|20-03-13 +Scotland/CVR52/2020|20-03-14 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 +England/ALDP-BCA4B0/2020|20-11-23 +USA/WA-S1222/2020|MT821613.1|20-05-08 +England/CAMB-76515/2020|20-03-29 +England/LEED-2A8D10/2020|20-03-31 +Scotland/CVR2381/2020|20-04-13 +Scotland/CVR2197/2020|20-04-11 +Scotland/CVR1519/2020|20-04-03 +England/NORW-E8C37/2020|20-04-13 +Wales/PHWC-3122E/2020|20-04-10 +Wales/PHWC-1645EC/2020|20-05-10 +England/PHEC-127E8/2020|20-03-28 +England/MILK-9A8AB8/2020|20-08-31 +IND/GBRC174b/2020|MT607610.1|20-06-05 +France/10036BG/2020|MT470106.1|20-03 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 +Scotland/CVR3629/2020|20-05-24 +Scotland/QEUH-5456F9/2020|20-05-13 +England/QEUH-990752/2020|20-08-29 +AUS/VIC38/2020|MT450953.1|20-03-11 +IHUCOVID-0133|LR794459.1|? +Switzerland/240009/2020|LR880588.1|20-08-07 +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 +Switzerland/101166/2020|LR824397.1|20-03-31 +Switzerland/100154/2020|LR824311.1|20-03-16 +PER/covper091/2020|MW030227.1|20-03-17 +England/CAMB-737D6/2020|20-03-31 +Wales/PHWC-16930B/2020|20-04-01 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 +England/BRIS-128DCE/2020|20-04-14 +Scotland/CVR2435/2020|20-04-14 +AUS/VIC995/2020|MT451680.1|20-03-31 +England/CAMB-1AC7D3/2020|20-04-22 +England/LEED-2A87C7/2020|20-04-03 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 +England/CAMB-7A7DF/2020|20-04-02 +Netherlands/NA_18/2020|LR878352.1|20-03-09 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 +Wales/PHWC-2E0A2/2020|20-04-10 +USA/WA-S2746/2020|MT947577.1|20-07-19 +USA/UT-05590/2020|MW084605.1|20-06-01 +Netherlands/NA_588/2020|LR883860.1|20 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +England/CAMB-7771E/2020|20-03-30 +England/CAMB-7DC91/2020|20-04-05 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 +USA/WI-UW-994/2020|MT846680.1|20-07-20 +USA/WI-UW-522/2020|MT750102.1|20-06-24 +USA/DC-HP00089/2020|MT509482.1|20-03-31 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 +England/BRIS-12D9F2/2020|20-05-06 +England/BRIS-12B156/2020|20-05-08 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 +USA/COVID20-1144/2020|MW067817.1|20-07-10 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 +Wales/PHWC-26B12/2020|20-03-29 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 +Scotland/EDB6052/2020|20-05-08 +England/CAMB-7FBCF/2020|20-04-16 +England/CAMB-784BC/2020|20-04-06 +B90|LR898037.1|? +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 +England/BRIS-130015/2020|20-04-11 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 +Wales/PHWC-2AF12/2020|20-04-06 +321398|LR962930.1|20-10-13 +England/QEUH-B8053B/2020|20-11-14 +IHUCOVID-0428|LR794641.1|? +USA/WA-S3458/2020|MW494078.1|20-12-07 +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 +USA/UT-03892/2020|MT711875.1|20-04-13 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 +USA/WA-S1281/2020|MT821642.1|20-05-12 +USA/WI-UW-288/2020|MT706396.1|20-04-08 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 +England/ALDP-5D3DEC/2020|20-06-19 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 +England/QEUH-9C7EA8/2020|20-09-11 +Scotland/EDB3341/2020|20-04-08 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 +England/LOND-D5444/2020|20-04-15 +Scotland/CVR3238/2020|20-04-26 +Scotland/EDB3662/2020|20-04-28 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 +England/OXON-B1781/2020|20-05-04 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 +England/CAMC-94C02D/2020|20-07-15 +England/MILK-95DBDD/2020|20-06-20 +England/CAMB-79ECC/2020|20-04-01 +England/PHEC-152C73/2020|20-11-16 +Scotland/QEUH-9D11C0/2020|20-09-16 +Switzerland/270068/2020|LR882987.1|20-09-02 +GRC/202_32984/2020|MT459870.1|20-03-12 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/PHEC-1B7C1/2020|20-04-08 +Scotland/CVR3919/2020|20-06-21 +England/ALDP-9558ED/2020|20-06-12 +England/BRIS-12F78D/2020|20-03-10 +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 +England/CAMC-94328A/2020|20-07-25 +England/CAMC-9424A3/2020|20-07-21 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 +England/OXON-AEBC7/2020|20-04-12 +Wales/PHWC-164485/2020|20-05-02 +England/ALDP-51F142/2020|20-06-02 +England/ALDP-49E391/2020|20-05-20 +Northern_Ireland/NIRE-10677D/2020|20-05-14 +England/MILK-9705F4/2020|20-08-18 +England/ALDP-9B6440/2020|20-08-28 +Scotland/EDB6515/2020|20-06-15 +England/ALDP-6839B9/2020|20-07-02 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 +England/NOTT-111117/2020|20-05-03 +England/ALDP-68EFBC/2020|20-07-02 +England/PHEC-16F19/2020|20-03-31 +England/GSTT-265D4DF/2020|20-03-19 +England/NORT-283BE4/2020|20-04-03 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +England/BRIS-123EDF/2020|20-04-08 +England/BRIS-123F09/2020|20-04-08 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 +England/LOND-D53CF/2020|20-04-15 +USA/WA-S2724/2020|MT947562.1|20-07-04 +USA/WA-S2728/2020|MT947566.1|20-07-08 +Scotland/CVR3185/2020|20-04-28 +England/BRIS-127A40/2020|20-04-17 +England/EXET-136ED9/2020|20-04-22 +England/ALDP-907D09/2020|20-06-22 +England/MILK-85E3E4/2020|20-07-18 +England/MILK-95862C/2020|20-06-11 +England/PHEC-219E0/2020|20-05-01 +England/LEED-2AA59E/2020|20-04-06 +England/ALDP-95A754/2020|20-06-13 +England/ALDP-95CEA8/2020|20-06-15 +Wales/PHWC-162E7A/2020|20-05-19 +England/ALDP-71D072/2020|20-07-01 +England/ALDP-954C6A/2020|20-06-13 +England/PHEC-20B81/2020|20-04-16 +England/MILK-9570D4/2020|20-06-10 +DV_IZSPB_236_S50|LR992121.1|20-08-29 +England/ALDP-9D8FFC/2020|20-09-18 +England/NORT-28B1EA/2020|20-04-18 +England/NORT-28B28D/2020|20-04-18 +England/LIVE-9BC33/2020|20-04-21 +England/ALDP-5A2A49/2020|20-06-14 +USA/WA-S1434/2020|MT821707.1|20-05-21 +USA/WA-S2573/2020|MT831840.1|20-06-17 +England/ALDP-9BEB16/2020|20-09-09 +Scotland/CVR1557/2020|20-04-03 +Wales/PHWC-34610/2020|20-04-21 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 +England/CAMB-82E1B/2020|20-04-14 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 +Scotland/EDB300/2020|20-03-29 +England/CAMB-1AA438/2020|20-04-17 +England/MILK-9C4087/2020|20-09-09 +England/PHEC-13ADF/2020|20-03-13 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 +Scotland/QEUH-94375E/2020|20-08-02 +England/CAMB-7C12A/2020|20-04-13 +England/CAMB-83348/2020|20-04-15 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 +ZW-6983|LR963462.1|20-05-01 +ZW-6978|LR963455.1|20-05-01 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 +Netherlands/NA_359/2020|LR883961.1|20-04-07 +England/CAMB-1AE7FF/2020|20-04-29 +Scotland/EDB2049/2020|20-04-18 +Scotland/EDB2100/2020|20-04-19 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 +England/CAMB-83FBD/2020|20-04-22 +England/CAMB-1AD004/2020|20-04-30 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +KOR/YS006/2020|MW345824.1|20-06-04 +KOR/YS008/2020|MW345825.1|20-06-07 +USA/AK-PHL660/2020|MW173157.1|20-06-27 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 +USA/UT-00495/2020|MT444543.1|20-04-02 +USA/UT-00353/2020|MT444564.1|20-03-27 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 +Scotland/EDB2451/2020|20-04-23 +Switzerland/240029/2020|LR880608.1|20-08-10 +England/RAND-12B3F28/2021|21-02-09 +England/RAND-12B3CF4/2021|21-02-09 +England/LIVE-A91F7/2020|20-03-25 +England/BRIS-127AD7/2020|20-04-16 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 +IND/GBRC-366a/2020|MT951170.1|20-06-18 +SAU/596/2020|MT755893.1|20-02-18 +England/TFCI-26FA9B7/2020|20-12-31 +England/MILK-B94ACC/2020|20-11-13 +Scotland/EDB5108/2020|20-03-31 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 +England/QEUH-963433/2020|20-08-10 +England/MILK-BB0022/2020|20-11-18 +England/MILK-BB0031/2020|20-11-18 +England/PHEC-14E15D/2020|20-12-09 +England/PHEC-149635/2020|20-10-28 +England/ALDP-9E75E9/2020|20-09-25 +England/ALDP-A68CF9/2020|20-10-12 +England/MILK-9F1898/2020|20-09-25 +Wales/PHWC-4815AA/2020|20-10-13 +England/QEUH-7A4BBB/2020|20-07-14 +USA/WA-S1922/2020|MT831459.1|20-06-03 +USA/WA-S1775/2020|MT834200.1|20-06-01 +England/ALDP-B82A0D/2020|20-11-14 +England/BRIS-12A70A/2020|20-05-01 +England/CAMB-77F61/2020|20-04-01 +England/NORW-EE34B/2020|20-03-24 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 +England/CAMB-81070/2020|20-04-20 +Scotland/CVR41/2020|20-03-13 +England/QEUH-96E605/2020|20-08-17 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 +Japan/TKYE622411_2020/2020|LC593808.1|20-07 +England/MILK-A18C8F/2020|20-10-03 +Wales/PHWC-30957/2020|20-04-08 +LC573289.2|20-06 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 +England/CAMB-74D5B/2020|20-03-19 +England/BRIS-125D67/2020|20-03-29 +England/ALDP-94D8F7/2020|20-06-20 +England/NOTT-111BFB/2020|20-05-29 +England/MILK-8664D7/2020|20-07-17 +England/CAMC-A40F67/2020|20-10-06 +England/QEUH-9B6EAC/2020|20-09-09 +England/NORT-2A4CAE/2020|20-09-17 +Northern_Ireland/NIRE-FB369/2020|20-08-31 +England/LEED-2AA394/2020|20-03-31 +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 +England/ALDP-5D52BE/2020|20-06-18 +England/ALDP-4A2BFC/2020|20-05-22 +England/ALDP-49F5B8/2020|20-05-22 +USA/WA-S2598/2020|MT831859.1|20-06-18 +USA/WA-S820/2020|MT641503.1|20-04-15 +Netherlands/NA_436/2020|LR883367.1|20-04-07 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 +England/CAMC-B36516/2020|20-11-05 +England/CAMC-B362D3/2020|20-11-05 +England/MILK-B3A284/2020|20-11-01 +England/CAMC-B365AD/2020|20-11-05 +AUS/VIC13094/2020|MW185501.1|20-07-31 +England/CAMC-947259/2020|20-07-21 +USA/COVID20-0537/2020|MT981422.1|20-06-04 +USA/COVID20-1129/2020|MW067826.1|20-07-10 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 +England/MILK-6166F0/2020|20-07-05 +USA/WI-UW-1194/2020|MT981478.1|20-08-11 +England/ALDP-955F15/2020|20-06-08 +England/ALDP-94EB75/2020|20-06-17 +England/SHEF-10B22B9/2020|20-04-20 +Scotland/QEUH-A9E7BD/2020|20-10-20 +Scotland/EDB7778/2020|20-09-16 +England/MILK-970CE0/2020|20-08-18 +England/SHEF-10CC3AA/2020|20-12-17 +England/MILK-566C5A/2020|20-06-12 +England/CAMC-C2CDFC/2020|20-12-07 +England/MILK-CAA0EE/2020|20-12-18 +England/QEUH-96A29C/2020|20-08-13 +England/ALDP-9BE8B5/2020|20-09-09 +Scotland/CVR4309/2020|20-09-14 +England/ALDP-9BECB9/2020|20-09-10 +England/MILK-9A9D09/2020|20-09-01 +England/CAMC-AEA62E/2020|20-10-25 +Wales/PHWC-260AA/2020|20-03-24 +England/BRIS-185470D/2020|20-05-01 +England/BRIS-12AF02/2020|20-05-01 +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +Switzerland/300433/2020|LR898634.1|20-09-29 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 +IND/GBRC455a/2020|MW600436.1|20-12-24 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 +England/CAMC-947392/2020|20-07-18 +AUS/VIC11646/2020|MW155572.1|20-07-22 +England/CAMC-A65DDB/2020|20-10-11 +England/QEUH-9F3FDD/2020|20-09-24 +England/QEUH-96A85E/2020|20-08-14 +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 +England/PHEC-149F0D/2020|20-11-19 +England/MILK-A230C1/2020|20-10-03 +England/QEUH-A76C07/2020|20-10-12 +England/MILK-AC7997/2020|20-10-21 +Scotland/QEUH-9B75D3/2020|20-09-04 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 +England/MILK-97356A/2020|20-08-14 +England/ALDP-A2FCA3/2020|20-10-05 +England/MILK-A474DA/2020|20-10-06 +England/QEUH-AA0035/2020|20-10-20
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_19_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,305 @@ +clade root_id from_tree_root +19A 1 +B 1 +B.26 4 > C7423T +B.48 5 > C20270T +B.15 8 > T4949C +B.5 9 > C29635T +B.54 10 > C14805T,G26144T +B.47 England/LIVE-A5D06/2020|20-03-17 > C6681T,A10982G,G11801A +20A 28 > C241T,C3037T,C14408T,A23403G +B.1.108 28 > C241T,C3037T,C14408T,A23403G +B.20 660 > A14940G +B.11 USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 > T514C,C22033A +B.1.14 664 > C25692T +B.27 England/SHEF-BFEBB/2020|20-03-24 > C11747T,T24364G,G29032A +B.19 USA/CA-CZB-1051/2020|MT449644.1|20-04-06 > G7273A,C10277T +B.45 Scotland/CVR780/2020|20-03-27 > C5997T,C12710T,C28854T +19B 676 > C8782T,T28144C +A 676 > C8782T,T28144C +B.10 698 > C6696T +B.23 England/SHEF-BFF21/2020|20-03-25 > C20270T > A18671G,A29683T +B.33 11 > C14805T,G26144T > T17247C +B.28 Scotland/EDB199/2020|20-03-26 > C14805T,G26144T > C22713T,G26031T,G28842T +B.29 England/ALDP-9EE3AC/2020|20-05-06 > C14805T,G26144T > G20991T,C23707T +B.40 20 > C14805T,G26144T > A2480G,C2558T +B.30 21 > C14805T,G26144T > A4236G,T25655C +B.41 22 > C14805T,G26144T > G5572T +B.1.105 England/CAMB-75BD8/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > C18060T,G28514T +B.1.152 England/ALDP-944BD9/2020|20-06-07 > C241T,C3037T,C14408T,A23403G > G1914A,G4399T,T16456C,G27746T +B.1.103 47 > C241T,C3037T,C14408T,A23403G > C25665T,G28325T +B.1.378 49 > C241T,C3037T,C14408T,A23403G > G3871T +B.1.199 USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 > C241T,C3037T,C14408T,A23403G > C2939T,T11698C,C18322T +B.1.139 51 > C241T,C3037T,C14408T,A23403G > A696C +B.1.91 England/EXET-1358BE/2020|20-04-15 > C241T,C3037T,C14408T,A23403G > A20092G,G24077T,T28630G +B.1.350 53 > C241T,C3037T,C14408T,A23403G > G25563T +B.1.222 Scotland/GCVR-172150/2020|20-03-30 > C241T,C3037T,C14408T,A23403G > C1545T,C22879A +B.1.379 274 > C241T,C3037T,C14408T,A23403G > A11782G,G22203T +B.1.182 275 > C241T,C3037T,C14408T,A23403G > A20268G +B.1.5 341 > C241T,C3037T,C14408T,A23403G > C15324T +B.1.215 Scotland/GCVR-173C30/2020|20-04-07 > C241T,C3037T,C14408T,A23403G > G3831A,T7441C +B.1.81 England/BRIS-12468B/2020|20-04-09 > C241T,C3037T,C14408T,A23403G > C1909T,T27576C +B.1.201 England/NORW-E9DF7/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > C2940T,C7765T +B.1.395 398 > C241T,C3037T,C14408T,A23403G > C6990T +B.1.67 Wales/PHWC-29E43/2020|20-04-04 > C241T,C3037T,C14408T,A23403G > G9220A,T26512C +B.1.98 England/LOND-D3534/2020|20-03-27 > C241T,C3037T,C14408T,A23403G > C25350T,T27280C +B.1.76 England/LIVE-A63E5/2020|20-03-18 > C241T,C3037T,C14408T,A23403G > G680T,T17835C +B.1.383 Wales/PHWC-260C8/2020|20-03-26 > C241T,C3037T,C14408T,A23403G > C12242T,C22264T,A25575C +B.1.142 Wales/PHWC-16C6F0/2020|20-06-09 > C241T,C3037T,C14408T,A23403G > T8944C,C14741T,G25552T +B.1.376 407 > C241T,C3037T,C14408T,A23403G > C5506T,G14241T +B.1.23 408 > C241T,C3037T,C14408T,A23403G > T7438C,C29353T +B.1.198 England/BRIS-128DCE/2020|20-04-14 > C241T,C3037T,C14408T,A23403G > A187G,C12213T,C19066A +B.1.153 412 > C241T,C3037T,C14408T,A23403G > G14580T +B.1.70 414 > C241T,C3037T,C14408T,A23403G > C1884T,T26497C +B.1.145 IND/GBRC99/2020|MT509504.1|20-05-06 > C241T,C3037T,C14408T,A23403G > G4866T,C14425A,A21511G +B.1.197 AUS/VIC1239/2020|MT451821.1|20-04-02 > C241T,C3037T,C14408T,A23403G > C6723T,T26094C,G28476T +B.1.143 417 > C241T,C3037T,C14408T,A23403G > C4084T +B.1.187 POL/PL_MCB_75/2020|MW273857.1|20-04-16 > C241T,C3037T,C14408T,A23403G > A544G,C17104T +B.1.414 419 > C241T,C3037T,C14408T,A23403G > G20275A +B.1.93 England/NORT-289814/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > C9165T,C13862T,T21033C,C28836T +B.1.78 Northern_Ireland/NIRE-1022CB/2020|20-03-25 > C241T,C3037T,C14408T,A23403G > C1997T,C28708T,G29422T +20B 426 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C +B.18 England/LIVE-9D7D6/2020|20-04-15 > G29711T > C1218T,C27493T,G27806T +B.51 USA/WI-UW-325/2020|MT706432.1|20-04-24 > G29711T > T2116A,C12880T,C28854T +A.1 USA/MN-MDH-1475/2020|MT920008.1|20-03-23 > C8782T,T28144C > A7966G,A17858G,C18060T,A22422G +B.37 13 > C14805T,G26144T > T17247C > C8078T +B.35 England/BRIS-130965/2020|20-04-13 > C14805T,G26144T > T17247C > A7479G,C10741T,C25572T,C27498T +B.32 15 > C14805T,G26144T > T17247C > A1587G +B.34 Scotland/CVR207/2020|20-03-18 > C14805T,G26144T > T17247C > C988T,G12832A +B.39 17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.1.391 England/CAMB-76515/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25429T > C16289T,T25429G +B.1.104 England/LEED-2A8D10/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G25429T > C13730T,C25916T +B.1.88 34 > C241T,C3037T,C14408T,A23403G > G25429T > C25916T +B.1.248 Scotland/CVR1519/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25429T > A6441G,A28841G +B.1.251 England/MILK-9589F6/2020|20-06-15 > C241T,C3037T,C14408T,A23403G > G25429T > G1141T,C7488T,C14396T +B.1.250 England/BRIS-128441/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G25429T > G10324T,C22713T,C28045T +B.1.392 England/NORW-E8C37/2020|20-04-13 > C241T,C3037T,C14408T,A23403G > G25429T > C3602T,C11460T,A24232G +B.1.252 43 > C241T,C3037T,C14408T,A23403G > G25429T > G1589A,G29474T +B.1.249 England/PHEC-127E8/2020|20-03-28 > C241T,C3037T,C14408T,A23403G > G25429T > G21538T +B.1.110 54 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T +20C 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.371 61 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.440 211 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T +B.1.223 Scotland/CVR3054/2020|20-04-24 > C241T,C3037T,C14408T,A23403G > A20268G > T6673C,G15438T,C28887T +B.1.419 England/CAMB-79ECC/2020|20-04-01 > C241T,C3037T,C14408T,A23403G > A20268G > A10323G,G21778A +B.1.181 USA/AK-PHL414/2020|MT946886.1|20-06-03 > C241T,C3037T,C14408T,A23403G > A20268G > C2143T,G26062T,C29119T,C29370G +B.1.416.1 310 > C241T,C3037T,C14408T,A23403G > A20268G > C2706T,C25731T,C28833T +B.1.225 England/NORW-E755B/2020|20-05-04 > C241T,C3037T,C14408T,A23403G > A20268G > A4198C,C7011T,C12915T,G21255T +B.1.157 England/PHEC-20A84/2020|20-04-20 > C241T,C3037T,C14408T,A23403G > A20268G > T17126C,C28201T,C28546A +B.1.418 Scotland/EDB4579/2020|20-05-06 > C241T,C3037T,C14408T,A23403G > A20268G > C6472T,C7815T,G13397A,C21682T +B.1.190 340 > C241T,C3037T,C14408T,A23403G > A20268G > G12550A,C20740A,G29734C +B.1.151 USA/CA-QDX-2630/2020|MW191335.1|20-03-15 > C241T,C3037T,C14408T,A23403G > C15324T > C18904T,C21646T,C22208T,G25606T +B.1.220 France/10065EE/2020|MT470176.1|20-03 > C241T,C3037T,C14408T,A23403G > C15324T > T10561C,C26895T,C29013T +B.1.210 IND/GBRC174b/2020|MT607610.1|20-06-05 > C241T,C3037T,C14408T,A23403G > C15324T > C3634T,C22444T,C28854T +B.1.178 345 > C241T,C3037T,C14408T,A23403G > C15324T > G28202A +B.1.147 Switzerland/100210/2020|LR884314.1|20-03-18 > C241T,C3037T,C14408T,A23403G > C15324T > C1191A,G15260A,C25433T +B.1.213 POL/PL_MCB_97/2020|MW273879.1|20-05-10 > C241T,C3037T,C14408T,A23403G > C15324T > C2570T,A7031G,G13617T +B.1.6 350 > C241T,C3037T,C14408T,A23403G > C15324T > C15277T +B.1.96 355 > C241T,C3037T,C14408T,A23403G > A26530G > G11596T +B.1.205 PER/covper091/2020|MW030227.1|20-03-17 > C241T,C3037T,C14408T,A23403G > A26530G > C15277T,A21917G +B.1.35 399 > C241T,C3037T,C14408T,A23403G > C6990T > C29200T +B.1.1.119 427 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A +A.5 678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +B.1.254 35 > C241T,C3037T,C14408T,A23403G > G25429T > C25916T > A10874G,T26677C +B.1.110.2 England/LEED-2A87C7/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G3230A,C23453T +B.1.485 66 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T20037C +B.1.349 68 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18555T,C28892T +B.1.453 USA/CA-CZB-11132/2020|MW276510.1|20-05-23 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2668T,T18240C,T28009C +B.1.489 Wales/PHWC-2E0A2/2020|20-04-10 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18568T,G24368T,C24621T +B.1.431 81 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C4999T,C13730T +B.1.314 USA/CA-QDX-434/2020|MW064457.1|20-03-20 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A2018G,C8697T +B.1.320 USA/CA-CZB-1793/2020|MT750334.1|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C379A,A20503G +B.1.521 108 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T +B.1.294 USA/WI-UW-1119/2020|MT929068.1|20-07-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A19899T,A21464G +B.1.306 USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G23311T,G24977C,C25777T,C29614T +B.1.39 123 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8788C,G26951A +B.1.324 USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7528T,G8213A +B.1.341 USA/WA-QDX-235/2020|MT806806.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12557C,A23534T +B.1.332 127 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1917T +B.1.325 USA/UT-QDX-2224/2020|MW191025.1|20-03-13 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C23191T,A25910C +B.1.293 USA/FL-QDX-1620/2020|MW190373.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5548T,G15906T,C28153T +B.1.40 131 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1076T,C10582T +B.1.323 142 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T9070C +B.1.356 England/LIVE-A91F7/2020|20-03-25 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T13006C,C19186T,C25688T +B.1.268 146 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G3892T +B.1.287 USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C16428T,C20555T,C21772T +B.1.38 150 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G25523T,T27869C +B.1.413 153 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C26625T +B.1.360 154 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27847T +B.1.366 155 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8041C,G22225T +B.1.363 USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C335T,G526C,T16425G +B.1.117 158 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G29705T +B.1.264 161 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11919T +B.1.313 163 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5183T +B.1.331 164 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25976A +B.1.165 165 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7851T,C20233T +B.1.338 166 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25572T +B.1.321 England/BRIS-129D72/2020|20-04-15 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1593T,C10440T,G29291A +B.1.283 USA/MN-MDH-1616/2020|MT997734.1|20-04-24 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2878T,G3146A,A27821G +B.1.166 172 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1887T +B.1.120 Wales/PHWC-26B12/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C829T,G28371T +B.1.319 174 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10851T +B.1.267 USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A8252G,G15193A,C25626G +B.1.487 177 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1734T,C23664T +B.1.513 Northern_Ireland/NIRE-1021DD/2020|20-03-14 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A6360G,G20709T +B.1.168 Scotland/EDB6052/2020|20-05-08 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18213T,A18818G +B.1.312 184 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9286T,G28899C +B.1.329 186 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C6406T,G18972A +B.1.315 USA/WI-UW-738/2020|MT772509.1|20-06-30 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T3049C,G4972A,A24129G +B.1.492 189 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T4888A,G28727T +B.1.115 ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G7295T,C28290T +B.1.276 USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G26233T,C27881T +B.1.483 USA/WI-UW-249/2020|MT706376.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C8016T,T15366C,G28903T +B.1.37 200 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C10712T +B.1.13 202 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C14786T,G20578T +B.1.274 USA/UT-04888/2020|MW084559.1|20-05-26 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > A716G,G4960T,G21604T +B.1.479 204 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G10631T +B.1.277 Wales/PHWC-2AF12/2020|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C19884T,C26447A +B.1.481 210 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T17838C,G26450T +B.1.442 USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C27416T,G28086T +B.1.112 251 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A6512C +B.1.163 252 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > G10793T +B.1.124 USA/WA-S1281/2020|MT821642.1|20-05-12 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A2161G,G11417T,C16376T +B.1.111 USA/CA-QDX-1044/2020|MW065007.1|20-03-17 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C1403T,G7798T,C10507T +B.1.162 256 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9195T,T15354C +B.1.438 England/ALDP-5D3DEC/2020|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1154G,G29474T +B.1.245 259 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1096G,G14874T +B.1.232 Scotland/EDB3341/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G27987T +B.1.243 USA/CA-CDC-4728/2020|MW001919.1|20-06-16 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7393T,T24076C,C27804T +B.1.397 USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G1135T,G1148T,G28109T +B.1.229 284 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7798T +B.1.235 Scotland/EDB3662/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > T5507A,A19855G +B.1.403 USA/CA-CDC-4704/2020|MW001903.1|20-06-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4596A,G19086T,C23114T +B.1.238 England/QEUH-544733/2020|20-05-14 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C7564T,C8683T,C12400T +B.1.231 England/OXON-B1781/2020|20-05-04 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C1714T,C27213T +B.1.405 USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G208T,G23522A,A25747C +B.1.406 England/MILK-977645/2020|20-07-24 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C3695T,C18744T,G25049T +B.1.1.4 429 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C +B.1.1.8 446 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6573T,C25528T +B.1.1.131 England/PHEC-1B7C1/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18115T +B.1.1.125 449 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T27264G +B.1.1.71 451 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T11638C +B.1.1.157 452 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C17678T +B.1.1.250 454 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1912T +B.1.1.189 England/CAMB-7767B/2020|20-03-31 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,C23802T,C28045T +B.1.1.172 459 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.304 USA/VA-DCLS-1212/2020|MW067767.1|20-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C936T,G3259T,A20860G,C28087T +B.1.1.192 USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C673T +B.1.1.174 USA/CA-CZB-13945/2020|MW565647.1|20-06-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G443A,T6579C,G28378T +B.1.1.194 England/OXON-AEBC7/2020|20-04-12 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,G24781T,G29706T +B.1.1.38 468 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.160 473 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.165 475 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 476 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T +B.1.1.105 487 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C12809T +B.1.1.274 489 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25912T +B.1.1.180 490 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T22843C +B.1.1.95 England/ALDP-68EFBC/2020|20-07-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T13827C,G18756T,C23430T +B.1.1.275 495 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.83 497 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T +B.1.1.1 499 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 510 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 511 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.292 Scotland/CVR41/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C823T,C3373A +B.1.1.171 England/BRIS-12DC53/2020|20-05-02 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1437T,G4720A,A4928T,G29745T +B.1.1.114 521 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T +B.1.1.314 542 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C +B.1.1.43 Scotland/CVR3185/2020|20-04-28 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C16946T,G26615T +B.1.150 England/BRIS-127A40/2020|20-04-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2659T,C17249T,G17722T +B.1.1.187 Northern_Ireland/NIRE-FB9C1/2020|20-08-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10260G,A10880G,G16197T,C24382T +B.1.1.164 555 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2164A +B.1.1.137 England/SHEF-CBE43/2020|20-04-26 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11396T,C17676T,C18713T +B.1.1.133 559 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8072G +B.1.1.297 England/MILK-9E2BDD/2020|20-09-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A9337G,A20742C,A27086T +B.1.1.237 566 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T +B.1.1.235 England/MILK-8664D7/2020|20-07-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C,C29733T +B.1.173 578 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G20931A +B.1.1.134 579 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6582T +B.1.1.37 582 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 583 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T +B.1.1.59 588 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2638T +B.1.1.16 Wales/PHWC-16881C/2020|20-04-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C222T,C19602T,C21780T,G29779A +B.1.1.148 England/PHEC-20B81/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C20474T +B.1.1.12 595 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3163C +B.1.1.168 598 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.239 606 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11620T +B.1.1.92 England/ALDP-5A2A49/2020|20-06-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3154C,C18981T +B.1.1.26 609 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A +B.1.1.89 612 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G27281T +B.1.1.116 USA/WA-S2573/2020|MT831840.1|20-06-17 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.67 England/QEUH-96AEF2/2020|20-08-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G7037T,G11447A,C12488T,C21648T +B.1.1.10 616 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A +B.1.1.25 621 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T +B.1.1.217 England/CAMB-82E1B/2020|20-04-14 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8374T,C19488T +B.1.1.96 628 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 Scotland/EDB300/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2399T,C15240T +B.1.1.56 England/PHEC-13ADF/2020|20-03-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.193 635 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G27996T +B.1.1.132 USA/CA-CZB-2184/2020|MW035923.1|20-05-26 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21205T,G21255C,G28960T +B.1.1.169 644 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.263 England/ALDP-952A44/2020|20-06-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5924A,G16852T,G18984T,T21775G +B.1.1.185 651 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.110.3 57 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > C601T,G27915A > G12832T +B.1.110.1 59 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.359 USA/NY-QDX-1993/2020|MW190794.1|20-03-18 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G28376T +B.1.493 89 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G26020T +B.1.494 USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C13252T +B.1.495 USA/WA-S1037/2020|MT642186.1|20-05-03 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > A18671C,C25466T,G28027T,G29742T +B.1.265 114 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C28833T +B.1.336 USA/CA-QDX-2685/2020|MW191430.1|20-03-17 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C9967T,G17590T +B.1.450 117 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G17808T +B.1.370 118 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C24378T +B.1.519 England/BRIS-127AD7/2020|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G29705T > G3638T,G28808T,G29434C +B.1.281 BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C2937T,C21310A +B.1.477 197 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C3811T,G22225A,C22477T +B.1.454 IND/GBRC-366a/2020|MT951170.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C26058T,G28851T +B.1.468 220 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T +B.1.36 223 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.1.158 431 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.289 433 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G11801A,G25552T +B.1.1.290 USA/WA-S1775/2020|MT834200.1|20-06-01 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G13513A,C28256T,C29784T +B.1.1.5 England/LOND-D6EBE/2020|20-04-03 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C8293T,A11839G,C16575T +B.1.1.222 USA/WA-S860/2020|MT642111.1|20-04-24 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C4886T,C16178T,A23756G +B.1.1.251 482 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.81 498 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T > C19366T +20D 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 500 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.215 England/NORW-E8709/2020|20-04-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G1820A,C6541T,A9737G,A29242G +B.1.1.113 USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > A11348G,G28690T +B.1.1.285 534 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 England/CAMB-7CBD1/2020|20-04-05 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G960T,G26589C,C27128T +B.1.1.49 Wales/PHWC-30957/2020|20-04-08 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T11654C,G22627A,G28628T +B.1.1.283 LC573289.2|20-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G2305T,G25563C,G28178T +B.1.1.139 USA/CA-CZB-4049/2020|MW134382.1|20-08-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C5979T,T27645A,G27666A,G29648T +B.1.1.33 543 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.204 England/MILK-ACCF27/2020|20-10-21 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A,C18131T,G26640T +B.1.1.279 England/BRIS-125D67/2020|20-03-29 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > C6347T,G18859T +B.1.1.207 576 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 Wales/PHWC-162751/2020|20-05-27 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A10948G > C6312A,G18538T,A20136G +B.1.1.308 England/CAMC-A40F67/2020|20-10-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G,A12529G +B.1.1.309 586 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 587 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 590 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 591 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 592 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 600 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.299 England/ALDP-4A2BFC/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A20826G,A23207G +B.1.1.301 England/ALDP-49F5B8/2020|20-05-22 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A19650G,T21368C +B.1.1.233 USA/WA-S2598/2020|MT831859.1|20-06-18 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T,G29254T +B.1.1.65 USA/WA-S820/2020|MT641503.1|20-04-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > A5538T,G17261A,T25783C +L.2 617 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +B.1.507 USA/VA-DCLS-1147/2020|MT992749.1|20-04 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G,G22487C +B.1.503 USA/CA-CZB-1275/2020|MT533209.1|20-04-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C23685T,G25947C,G27703T +B.1.499 USA/NY-QDX-2365/2020|MW191144.1|20-03-16 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 USA/CA-CZB-2139/2020|MT750510.1|20-05-21 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C5540A,C19145T +B.1.502 USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > G3638A,T13914C,C16217T +B.1.501 USA/NC-QDX-174/2020|MT786825.1|20-04-27 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,C18693A,G26828T +B.1.504 ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C21731T,G26217T,G29645T +B.1.36.17 227 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C,C7528T,C29555T +C.3 England/ALDP-49EC3C/2020|20-05-20 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T,G29392T,C29541T +C.14 503 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 PER/covper040/2020|MW030271.1|20-05-05 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C12854T,G20752T,A21131G +C.4 SRB/NS19622-16-06/2020|MW327528.1|20-06-15 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +N.1 USA/MA_MGH_00693/2020|MT520290.1|20-04-06 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,T28360C,C29769T +N.4 CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G,C14805T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_19_path_mutations.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,438 @@ +sample_id path_from_root +England/BRIS-1853249/2020|20-04-02 (1) > C24034T (2) > C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 (1) > C24034T (2) > +Wales/PHWC-25B04/2020|20-03-24 (1) > C875T (3) > A20637G +Wales/LIVE-A6831/2020|20-03-16 (1) > C875T (3) > T14859C +Scotland/EDB1317/2020|20-04-09 (1) > C7423T (4) > G4207A,T7423C +Scotland/EDB354/2020|20-03-30 (1) > C7423T (4) > A29780C +England/SHEF-BFF8B/2020|20-03-25 (1) > C20270T (5) > C1473T +England/SHEF-BFFC7/2020|20-03-25 (1) > T4949C (8) > G28027T +England/PHEC-1E01E/2020|20-04-03 (1) > T4949C (8) > C22445T +DP0476/2020|LC571003.1|20-02-16 (1) > C29635T (9) > C29592T +DP0191/2020|LC570980.1|20-02-15 (1) > C29635T (9) > A3854G +England/LIVE-A5D06/2020|20-03-17 (1) > C6681T,A10982G,G11801A +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 (1) > A14940G (660) > C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 (1) > A14940G (660) > A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 (1) > T514C,C22033A +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 (1) > C25692T (664) > T15867A +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 (1) > C25692T (664) > G10617A,G22225T +England/SHEF-BFEBB/2020|20-03-24 (1) > C11747T,T24364G,G29032A +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 (1) > G7273A,C10277T +HKG/HKU-904a/2020|MT365032.1|20-01-30 (1) > C8782T,T28144C (676) > C4158T,C18828T +England/LIVE-9E66F/2020|20-04-10 (1) > C6696T (698) > C7765T,G10256T +Scotland/CVR705/2020|20-03-26 (1) > C6696T (698) > C11001T,G17122T +Scotland/EDB046/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C9996T,T26144G +Scotland/EDB199/2020|20-03-26 (1) > C14805T,G26144T (10) > C22713T,G26031T,G28842T +England/ALDP-9EE3AC/2020|20-05-06 (1) > C14805T,G26144T (10) > G20991T,C23707T +England/CAMB-8042A/2020|20-04-10 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > A4015T +England/CAMB-737B8/2020|20-03-30 (1) > C14805T,G26144T (10) > A2480G,C2558T (20) > G3971T,G28380T +USA/WA-S885/2020|MT642386.1|20-04-22 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > G7739T,C25904T +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 (1) > C14805T,G26144T (10) > A4236G,T25655C (21) > A5269G,C9943T +USA/WA3-UW1/2020|MT163716.1|20-02-27 (1) > C14805T,G26144T (10) > G5572T (22) > T2446C,C3411T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 (1) > C14805T,G26144T (10) > G5572T (22) > C28311T +England/LIVE-9D7D6/2020|20-04-15 (1) > G29711T (667) > C1218T,C27493T,G27806T +USA/WI-UW-325/2020|MT706432.1|20-04-24 (1) > G29711T (667) > T2116A,C12880T,C28854T +Scotland/CVR780/2020|20-03-27 (1) > C5997T,C12710T,C28854T +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 (1) > C8782T,T28144C (676) > A7966G,A17858G,C18060T,A22422G +England/SHEF-BFF21/2020|20-03-25 (1) > C20270T (5) > A18671G,A29683T +Switzerland/100159/2020|LR884273.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > C16995T +England/LOND-126031F/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > A20511G +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > +England/BRIS-130965/2020|20-04-13 (1) > C14805T,G26144T (10) > T17247C (11) > A7479G,C10741T,C25572T,C27498T +Scotland/CVR44/2020|20-03-13 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > G443A +Scotland/CVR839/2020|20-03-27 (1) > C14805T,G26144T (10) > T17247C (11) > A1587G (15) > T7816A,C24023T +Scotland/CVR207/2020|20-03-18 (1) > C14805T,G26144T (10) > T17247C (11) > C988T,G12832A +England/NORT-284A9B/2020|20-03-25 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > G28655A,C28657T +Scotland/CVR10/2020|20-03-10 (1) > C14805T,G26144T (10) > T17247C (11) > A1515G,C9223T (17) > T9223C,A21625G +Spain/H12_46/2020|LR884009.1|20-04-08 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > C7967T,C16694T +Spain/R11/2020|LR884126.1|20-03-06 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > +Scotland/EDB5629/2020|20-03-24 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > G27870T +Scotland/EDB5040/2020|20-04-02 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G23403A (678) > G9928T (679) > C593T +England/BRIS-123965/2020|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G7042T,G8861T (29) > C5806T,C10450T +England/BRIS-125347/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G7042T,G8861T (29) > +IND/Isolate_9088/2020|MW555597.1|20-06-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C4809T (30) > G14245A,G28325A +IND/763/2020|MT577009.1|20 (1) > C241T,C3037T,C14408T,A23403G (28) > C4809T (30) > +England/CAMB-75BD8/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C18060T,G28514T +England/ALDP-944BD9/2020|20-06-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G1914A,G4399T,T16456C,G27746T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C25665T,G28325T (47) > C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C25665T,G28325T (47) > G16075T +USA/WI-UW-26/2020|MT706147.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G3871T (49) > A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G3871T (49) > C19862T +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C2939T,T11698C,C18322T +USA/IN-QDX-184/2020|MT786818.1|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > A696C (51) > G3871T,T27299C +USA/WI-UW-558/2020|MT750137.1|20-06-25 (1) > C241T,C3037T,C14408T,A23403G (28) > A696C (51) > +England/EXET-1358BE/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > A20092G,G24077T,T28630G +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1997T +Scotland/GCVR-172150/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C1545T,C22879A +England/BRIS-124885/2020|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > A11782G,G22203T (274) > T2815C,T6892C +England/BRIS-122C4F/2020|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > A11782G,G22203T (274) > G27754T +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > G28881A +USA/WI-UW-37/2020|MT706158.1|20-03-22 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G11417T +Scotland/GCVR-173C30/2020|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G3831A,T7441C +England/BRIS-12468B/2020|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > C1909T,T27576C +England/NORW-E9DF7/2020|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C2940T,C7765T +Wales/PHWC-27B20/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > T22435C +Wales/PHWC-2624A/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > C27476T +Wales/PHWC-29E43/2020|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G9220A,T26512C +England/LOND-D3534/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > C25350T,T27280C +England/LIVE-A63E5/2020|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G680T,T17835C +Wales/PHWC-260C8/2020|20-03-26 (1) > C241T,C3037T,C14408T,A23403G (28) > C12242T,C22264T,A25575C +Wales/PHWC-16C6F0/2020|20-06-09 (1) > C241T,C3037T,C14408T,A23403G (28) > T8944C,C14741T,G25552T +Wales/PHWC-27461/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > C5506T,G14241T (407) > C19374T +Wales/PHWC-29F13/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > C5506T,G14241T (407) > C19151T,G23612A +AUS/VIC989/2020|MT451674.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > T7438C,C29353T (408) > A26864G,C27630T +AUS/VIC1056/2020|MT451723.1|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > T7438C,C29353T (408) > A21944T +England/LIVE-A65EF/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G14580T (412) > G10523C +Wales/PHWC-2B7CE/2020|20-04-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G14580T (412) > C9857T,G28903C +Scotland/GCVR-1725BE/2020|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > C1884T,T26497C (414) > C6730T,G28001T +Scotland/CVR30/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > C1884T,T26497C (414) > +IND/GBRC99/2020|MT509504.1|20-05-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G4866T,C14425A,A21511G +AUS/VIC1239/2020|MT451821.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C6723T,T26094C,G28476T +IND/GBRC128/2020|MT539172.1|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C4084T (417) > G5572T +IND/GBRC123/2020|MT539176.1|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C4084T (417) > G5194T,C22326T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > A544G,C17104T +England/CAMB-7BED9/2020|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G20275A (419) > A6672G,C10641T +Netherlands/NA_302/2020|LR878041.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G20275A (419) > A3058G +England/NORT-289814/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > C9165T,C13862T,T21033C,C28836T +Northern_Ireland/NIRE-1022CB/2020|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > C1997T,C28708T,G29422T +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > T241C +England/CAMB-76515/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C16289T,T25429G +England/LEED-2A8D10/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C13730T,C25916T +England/CAMB-7EBDF/2020|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C25916T (34) > A13433G,C18377T +Scotland/CVR1519/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A6441G,A28841G +England/MILK-9589F6/2020|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G1141T,C7488T,C14396T +England/BRIS-128441/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G10324T,C22713T,C28045T +England/NORW-E8C37/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C3602T,C11460T,A24232G +Wales/PHWC-3122E/2020|20-04-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G1589A,G29474T (43) > A22457G +Wales/PHWC-1645EC/2020|20-05-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G1589A,G29474T (43) > A11438G +England/PHEC-127E8/2020|20-03-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G21538T +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > T18877C,C25904T +Scotland/CVR3054/2020|20-04-24 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T6673C,G15438T,C28887T +USA/AK-PHL414/2020|MT946886.1|20-06-03 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C2143T,G26062T,C29119T,C29370G +England/NORW-E755B/2020|20-05-04 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > A4198C,C7011T,C12915T,G21255T +England/PHEC-20A84/2020|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T17126C,C28201T,C28546A +Scotland/EDB4579/2020|20-05-06 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C6472T,C7815T,G13397A,C21682T +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C18904T,C21646T,C22208T,G25606T +France/10065EE/2020|MT470176.1|20-03 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > T10561C,C26895T,C29013T +IND/GBRC174b/2020|MT607610.1|20-06-05 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C3634T,C22444T,C28854T +France/10036BG/2020|MT470106.1|20-03 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G28202A (345) > +IHUCOVID-0033|LR794417.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G28202A (345) > G16089A,G24794T +Switzerland/100210/2020|LR884314.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C1191A,G15260A,C25433T +POL/PL_MCB_97/2020|MW273879.1|20-05-10 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C2570T,A7031G,G13617T +AUS/VIC38/2020|MT450953.1|20-03-11 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C15277T (350) > C10350T +IHUCOVID-0133|LR794459.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C15277T (350) > C8394T +USA/MN67-MDH67/2020|MT911566.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > G11596T (355) > +Netherlands/NA_292/2020|LR878032.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > G11596T (355) > G20568A +PER/covper091/2020|MW030227.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > C15277T,A21917G +Wales/PHWC-16930B/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > C29200T (399) > C3264T +Wales/PHWC-34285/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > C29200T (399) > A6616G,C12915T +England/BRIS-128DCE/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > A187G,C12213T,C19066A +England/CAMB-1AC7D3/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > A13863G +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G1319A (58) > C23551T,G27084T +England/LEED-2A87C7/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G3230A,C23453T +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24381T (62) > +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24381T (62) > C23718T +USA/VA-DCLS-0676/2020|MT911804.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/MI-QDX-476/2020|MW064508.1|20-03-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24442T (63) > +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T20037C (66) > G2900T,C23179T +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T20037C (66) > G28073T +USA/VA-DCLS-1557/2020|MW208010.1|20-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > C25207T +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > A6035G +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C2668T,T18240C,T28009C +Wales/PHWC-2E0A2/2020|20-04-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18568T,G24368T,C24621T +Scotland/EDB3137/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > G25494T,C29719T +Scotland/EDB2810/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C4999T,C13730T (81) > C19113T,T21752C +USA/CA-QDX-434/2020|MW064457.1|20-03-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A2018G,C8697T +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C379A,A20503G +USA/WA-UW-2108/2020|MT345811.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G3259T,T27964C +USA/WI-UW-1119/2020|MT929068.1|20-07-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A19899T,A21464G +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G23311T,G24977C,C25777T,C29614T +England/CAMB-7771E/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4586T +England/CAMB-7DC91/2020|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4321T +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7528T,G8213A +USA/WA-QDX-235/2020|MT806806.1|20-04-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A12557C,A23534T +USA/VA-DCLS-0426/2020|MT679166.1|20-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1917T (127) > C8327T +USA/VA-DCLS-0187/2020|MT450889.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1917T (127) > G29431T +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C23191T,A25910C +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5548T,G15906T,C28153T +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T9070C (142) > C20325T +USA/CA-CZB0731/2020|MT385450.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T9070C (142) > G9049T,T10960C +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G3892T (146) > G26787A +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G3892T (146) > G20062T +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C16428T,C20555T,C21772T +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > C3044T +USA/WA-UW-2008/2020|MT326031.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G25523T,T27869C (150) > G4975T,T29194C +USA/WA-UW-6327/2020|MT412324.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C26625T (153) > C5240G +USA/WA-UW-3832/2020|MT358685.1|20-03-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C26625T (153) > C3141A,C17766T +USA/MI-QDX-371/2020|MW064412.1|20-03-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27847T (154) > A2948G +USA/MI-QDX-298/2020|MW064340.1|20-03-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27847T (154) > C6628T +USA/TX-QDX-261/2020|MT806804.1|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > C18029T +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8041C,G22225T (155) > G26828A,C28005T +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C335T,G526C,T16425G +England/BRIS-128CA3/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > C4586T,C29738T +USA/DC-HP00089/2020|MT509482.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11919T (161) > C9510T +USA/UT-03817/2020|MT873871.1|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11919T (161) > A13440G,C21998T +USA/IL-UW-1065/2020|MT929017.1|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5183T (163) > G28878T +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5183T (163) > A361G,C27596T +USA/MI-QDX-620/2020|MW064645.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25976A (164) > G3091A +USA/MI-QDX-595/2020|MW064630.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25976A (164) > C18981T +England/BRIS-12D9F2/2020|20-05-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A20262G +England/BRIS-12B156/2020|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A13707G +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25572T (166) > G29747T +AUS/VIC1161/2020|MT451779.1|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25572T (166) > C18744T,C29284T +England/BRIS-129D72/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1593T,C10440T,G29291A +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C2878T,G3146A,A27821G +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1887T (172) > G533A +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1887T (172) > A27979T +Wales/PHWC-26B12/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C829T,G28371T +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C10851T (174) > T3037C +USA/CT-UW-4372/2020|MT345874.1|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C10851T (174) > C3768T,C25584T +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A8252G,G15193A,C25626G +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G840A,C19032T +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1734T,C23664T (177) > G12160T +Northern_Ireland/NIRE-1021DD/2020|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A6360G,G20709T +Scotland/EDB6052/2020|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G18213T,A18818G +England/CAMB-7FBCF/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A12556G +England/CAMB-784BC/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A13852G +B90|LR898037.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A21360C +O9|LR963074.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C6406T,G18972A (186) > A1925C,C5796T +USA/WI-UW-738/2020|MT772509.1|20-06-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T3049C,G4972A,A24129G +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > T5674C,C8290T +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T4888A,G28727T (189) > C466T,A17691G +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G7295T,C28290T +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G26233T,C27881T +USA/WI-UW-249/2020|MT706376.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C8016T,T15366C,G28903T +USA/VA-DCLS-0593/2020|MT951960.1|20-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C10712T (200) > T25304C,C28890T +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C10712T (200) > T9708C +England/PHEC-1C872/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C2453T,C11102T +England/BRIS-130015/2020|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C14786T,G20578T (202) > C6361T +USA/UT-04888/2020|MW084559.1|20-05-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > A716G,G4960T,G21604T +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G10631T (204) > +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G10631T (204) > G8131T +Wales/PHWC-2AF12/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C19884T,C26447A +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +Switzerland/100363/2020|LR884411.1|20-03-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C27416T,G28086T +USA/UT-01683/2020|MT536956.1|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A6512C (251) > G370T,A3841T +USA/UT-03892/2020|MT711875.1|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A6512C (251) > C683T +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > G10793T (252) > C29311T +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > G10793T (252) > G21724T,G25186A +USA/WA-S1281/2020|MT821642.1|20-05-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A2161G,G11417T,C16376T +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C1403T,G7798T,C10507T +USA/WI-UW-413/2020|MT772562.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C5884T,T9195C +USA/WI-UW-288/2020|MT706396.1|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C9195T,T15354C (256) > C21855T +England/ALDP-5D3DEC/2020|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A1154G,G29474T +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > C1420T +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A1096G,G14874T (259) > G15982T,G24914T +Scotland/EDB3341/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G27987T +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G7393T,T24076C,C27804T +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G1135T,G1148T,G28109T +England/LOND-D5444/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G7798T (284) > C12789T +Scotland/CVR3238/2020|20-04-26 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G7798T (284) > G22992T +Scotland/EDB3662/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > T5507A,A19855G +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C4596A,G19086T,C23114T +England/QEUH-544733/2020|20-05-14 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C7564T,C8683T,C12400T +England/OXON-B1781/2020|20-05-04 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C1714T,C27213T +England/MILK-977645/2020|20-07-24 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C3695T,C18744T,G25049T +England/CAMB-79ECC/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > A10323G,G21778A +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > G12550A,C20740A,G29734C (340) > C6628T,C18483T +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > G12550A,C20740A,G29734C (340) > C17977T,G28975T +GRC/202_32984/2020|MT459870.1|20-03-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +GRC/208_33922/2020|MT459876.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > +England/PHEC-1B7C1/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C18115T +England/ALDP-651C9D/2020|20-07-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > C3698T,A28765T +Scotland/CVR3919/2020|20-06-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T27264G (449) > A22330G +England/BRIS-12F78D/2020|20-03-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C25584A +Switzerland/100802/2020|LR824314.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T11638C (451) > C8389T,C29708T +England/NORT-282972/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > +England/CAMB-80554/2020|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > T3745C +England/PHEC-20E4C/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > C7200T,C8290T +England/NORT-283B7B/2020|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1912T (454) > T28118C,G29227A +England/CAMB-7767B/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9430T,C23802T,C28045T +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C2842T,C18570T +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G (459) > C17125T +USA/VA-DCLS-1212/2020|MW067767.1|20-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C936T,G3259T,A20860G,C28087T +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C673T +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G443A,T6579C,G28378T +England/OXON-AEBC7/2020|20-04-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9430T,G24781T,G29706T +England/LOND-D4C6B/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A8681G,C10369T +Wales/PHWC-164485/2020|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,G29777T (468) > A16653G +Northern_Ireland/NIRE-10677D/2020|20-05-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > G18148A +Northern_Ireland/NIRE-106740/2020|20-05-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,C26208T (473) > C11259T,C26681T +England/MILK-9705F4/2020|20-08-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > C15045T +England/ALDP-9B6440/2020|20-08-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > +Scotland/EDB6515/2020|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > +England/CAMB-7620F/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4876T,T12809C +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C12809T (487) > C4795T,C29171T +England/PHEC-1DF03/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C18568T,G24348T +England/CAMB-1AB21F/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25912T (489) > C6385T,C12880T +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > T28010A,T28127C +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T22843C (490) > C18652T +England/ALDP-68EFBC/2020|20-07-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T,C23430T +England/PHEC-16F19/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > C4570A +England/GSTT-265D4DF/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > +Northern_Ireland/NIRE-1038B9/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > G25947C,C28312T +Northern_Ireland/NIRE-FCE85/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C12747T,G18028T +England/NORT-283BE4/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C24026T +DK/AD3_Farm1/2020|MT919525.1|20-06-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > A5421G,A22920T +DK/KL14_Farm1/2020|MT919536.1|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T (510) > +England/BRIS-123EDF/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C2509T +England/BRIS-123F09/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C9118T +England/BRIS-12DC53/2020|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1437T,G4720A,A4928T,G29745T +USA/WA-UW-6243/2020|MT412316.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C3096T +England/LOND-D53CF/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G621A +Scotland/CVR3185/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C16946T,G26615T +England/BRIS-127A40/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G2659T,C17249T,G17722T +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A10260G,A10880G,G16197T,C24382T +England/CAMB-83A9E/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > G7761A,C14931T +England/EXET-136ED9/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G2164A (555) > C8733T +England/SHEF-CBE43/2020|20-04-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C11396T,C17676T,C18713T +POL/PL_P12/2020|MT511068.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > C106T,C8025T +England/MILK-9E2BDD/2020|20-09-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A9337G,A20742C,A27086T +England/PHEC-219E0/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T23227C +England/LEED-2AA59E/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C28969T +England/SHEF-C13B7/2020|20-05-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > G10870T,C15315T +England/SHEF-10B2E79/2020|20-05-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G20931A (578) > A9272C,G26416T +England/OXON-AEF9E/2020|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C140T,T6582A +Wales/PHWC-162E7A/2020|20-05-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6582T (579) > C5497T +England/ALDP-71D072/2020|20-07-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T26156C +England/MILK-9573DB/2020|20-06-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,A28169G (582) > T9292C,C21910T +England/ALDP-954C6A/2020|20-06-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G27857T +Wales/ALDP-6C3E72/2020|20-07-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > C13329T,C29675T +England/ALDP-5A15D0/2020|20-06-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C2638T (588) > G6589A,A22528G +Wales/PHWC-16881C/2020|20-04-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C222T,C19602T,C21780T,G29779A +England/PHEC-20B81/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C20474T +England/QEUH-95DD9B/2020|20-08-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C2113T,T27856G +England/MILK-9570D4/2020|20-06-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3163C (595) > C7768T +England/NORT-28B1EA/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > C27741T +England/NORT-28B28D/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > A8734G +England/LIVE-9BC33/2020|20-04-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C11620T (606) > C4540T,C28006T +England/ALDP-5A2A49/2020|20-06-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3154C,C18981T +USA/WA-S1434/2020|MT821707.1|20-05-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C8802T +England/CAMB-80B43/2020|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > C2334T,C23121T +England/CAMB-7666D/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G27281T (612) > G10870T,C21614T +USA/WA-S2573/2020|MT831840.1|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G +England/QEUH-96AEF2/2020|20-08-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G7037T,G11447A,C12488T,C21648T +Scotland/CVR1557/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G23401T +Wales/PHWC-34610/2020|20-04-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G16014A +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C19273T +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > G15260T,G26268T +England/CAMB-82E1B/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A8374T,C19488T +SAU/KFSHRC44/2020|MT820480.1|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > +SAU/KAIMRC67/2020|MT820487.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > G29422T +Scotland/EDB300/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C2399T,C15240T +England/PHEC-13ADF/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T +England/NORT-282796/2020|20-03-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > A1755G,C15824T +England/NORT-2839AE/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G27996T (635) > G29315T,G29468C +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C21205T,G21255C,G28960T +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > G1589T +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > T3127C +England/ALDP-952A44/2020|20-06-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G5924A,G16852T,G18984T,T21775G +Netherlands/NA_359/2020|LR883961.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C13502T +Netherlands/NA_589/2020|LR883868.1|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,A16179G (651) > C21588T,G25012T +Scotland/EDB2049/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > T25916C +Scotland/EDB2100/2020|20-04-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C25916T (34) > A10874G,T26677C (35) > G25440A,G29745T (36) > +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > C601T,G27915A (56) > A17521G,A22206G +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > T17208C +USA/WI-UW-269/2020|MT429191.1|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G1319A (58) > G2945A,C10156T (59) > A23588T,C27657T +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > T29128C +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > C4012T +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T +USA/WA-S1037/2020|MT642186.1|20-05-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > A18671C,C25466T,G28027T,G29742T +USA/MN-QDX-981/2020|MW065078.1|20-03-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T (114) > C3817T,A23813G +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T,G17590T +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C9693T +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C15352T +USA/UT-00495/2020|MT444543.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > G27717A +USA/UT-00353/2020|MT444564.1|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > T11131A +Scotland/EDB3598/2020|20-04-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1076T,C10582T (131) > G22244T,C26461T +Scotland/EDB2451/2020|20-04-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1076T,C10582T (131) > T10963A +England/LIVE-A91F7/2020|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T13006C,C19186T,C25688T +England/BRIS-127AD7/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1968T,G29705T (158) > G3638T,G28808T,G29434C +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T,C21310A +IND/GBRC-366a/2020|MT951170.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C26058T,G28851T +SAU/596/2020|MT755893.1|20-02-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > A23503G +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > G11417T,G28960T +SAU/578/2020|MT755891.1|20-02-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C27527T,C29421T +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G208T,G23522A,A25747C +Switzerland/300264/2020|LR898541.1|20-10-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C2706T,C25731T,C28833T (310) > C2470T,C4084T +England/QEUH-963433/2020|20-08-10 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C2706T,C25731T,C28833T (310) > C5339T +USA/WA-S2264/2020|MT831437.1|20-06-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > T242G,C5020T +USA/WA-S1922/2020|MT831459.1|20-06-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C18086T (431) > C12528A +USA/WA-S1775/2020|MT834200.1|20-06-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G13513A,C28256T,C29784T +England/LOND-D6EBE/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C8293T,A11839G,C16575T +USA/WA-S860/2020|MT642111.1|20-04-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C4886T,C16178T,A23756G +England/BRIS-12A70A/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6573T,C25528T (446) > C21077T +England/CAMB-77F61/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6573T,C25528T (446) > G22299A +England/NORW-EE34B/2020|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > G18315A +England/NORW-E8693/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > C24904T,T25088G (482) > C1348T,C3653T +Northern_Ireland/NIRE-FBB52/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C26270T +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T (497) > C19366T (498) > C6114T +England/CAMB-81070/2020|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C4698T +Scotland/CVR41/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C823T,C3373A +England/NORW-E8709/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G1820A,C6541T,A9737G,A29242G +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G,G28690T +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A8565C,A28847T +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T (534) > A11023G +England/CAMB-7CBD1/2020|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G960T,G26589C,C27128T +Wales/PHWC-30957/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T11654C,G22627A,G28628T +LC573289.2|20-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G2305T,G25563C,G28178T +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C5979T,T27645A,G27666A,G29648T +England/CAMB-74D5B/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > +England/MILK-ACCF27/2020|20-10-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A8072G (559) > T3873C,G3880A,C18131T,G26640T +England/BRIS-125D67/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C6347T,G18859T +England/MILK-8664D7/2020|20-07-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G26918T,T29464C,C29733T +USA/VA-DCLS-1073/2020|MT981458.1|20-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > T27846C,C29171T +USA/VA-DCLS-0120/2020|MT482111.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > T9172C,G26730T (576) > C10818T,C21998T +Wales/PHWC-162751/2020|20-05-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A10948G (575) > C6312A,G18538T,A20136G +England/CAMC-A40F67/2020|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G,A12529G +England/QEUH-9B6EAC/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > A29700G +England/NORT-2A4CAE/2020|20-09-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > C27945T +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > A3801G,C26985T +Northern_Ireland/NIRE-FB369/2020|20-08-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G (587) > G25456T +England/LEED-2AA4EC/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C22326T,C27128T +England/LEED-2AA394/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,G23587C (590) > C20941T +England/BRIS-1854318/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C4780T,G22468T +England/BRIS-12E6FA/2020|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > T7792C (591) > C14676T,C17119T +England/WSFT-25C13CB/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > +England/PORT-2F5D9C/2020|20-06-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > A5277G +England/ALDP-5D52BE/2020|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > T28494C +England/ALDP-6FAF24/2020|20-06-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G (600) > C6633T,C19862T +England/ALDP-4A2BFC/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A20826G,A23207G +England/ALDP-49F5B8/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G,T21368C +USA/WA-S2598/2020|MT831859.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T,G29254T +USA/WA-S820/2020|MT641503.1|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,G17261A,T25783C +Netherlands/NA_436/2020|LR883367.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > C4824T +USA/COVID20-0537/2020|MT981422.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > C601T,G27915A (56) > G12832T (57) > C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > C601T,G27915A (56) > G12832T (57) > A28165G +USA/VA-DCLS-1147/2020|MT992749.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G,G22487C +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C23685T,G25947C,G27703T +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C5540A,C19145T +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > G3638A,T13914C,C16217T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,C18693A,G26828T +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C21731T,G26217T,G29645T +England/ALDP-94EB75/2020|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C3811T,G22225A,C22477T (197) > +England/ALDP-6E2806/2020|20-07-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C3811T,G22225A,C22477T (197) > T16456G,C27769G +Wales/PHWC-360A7/2020|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G11801A,G25552T (433) > T4330C,T24063C +Wales/PHWC-260AA/2020|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G11801A,G25552T (433) > T7168C +England/CAMB-72B44/2020|20-03-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/CAMB-822D3/2020|20-04-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > +England/ALDP-49EC3C/2020|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2447T,G22199T,G29392T,C29541T +PER/covper024/2020|MW030255.1|20-07-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > C17436T,G27478T +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G29179T (503) > A10323G,G27160T +PER/covper040/2020|MW030271.1|20-05-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C12854T,G20752T,A21131G +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C28969T +USA/WI-UW-114/2020|MT706234.1|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A14330G,A27989G +England/MILK-ABBF2B/2020|20-10-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C,C7528T,C29555T (227) > C10474T,C13536T +England/QEUH-96A85E/2020|20-08-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C,C7528T,C29555T (227) > T23986C +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,T28360C,C29769T +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G,C14805T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_19_sample_names.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,437 @@ +England/BRIS-1853249/2020|20-04-02 +NPL/61-TW/2020|MT072688.1|20-01-13 +Wales/PHWC-25B04/2020|20-03-24 +Wales/LIVE-A6831/2020|20-03-16 +Scotland/EDB1317/2020|20-04-09 +Scotland/EDB354/2020|20-03-30 +England/SHEF-BFF8B/2020|20-03-25 +England/SHEF-BFFC7/2020|20-03-25 +England/PHEC-1E01E/2020|20-04-03 +DP0476/2020|LC571003.1|20-02-16 +DP0191/2020|LC570980.1|20-02-15 +England/LIVE-A5D06/2020|20-03-17 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 +England/SHEF-BFEBB/2020|20-03-24 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 +HKG/HKU-904a/2020|MT365032.1|20-01-30 +England/LIVE-9E66F/2020|20-04-10 +Scotland/CVR705/2020|20-03-26 +Scotland/EDB046/2020|20-03-15 +Scotland/EDB199/2020|20-03-26 +England/ALDP-9EE3AC/2020|20-05-06 +England/CAMB-8042A/2020|20-04-10 +England/CAMB-737B8/2020|20-03-30 +USA/WA-S885/2020|MT642386.1|20-04-22 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 +USA/WA3-UW1/2020|MT163716.1|20-02-27 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 +England/LIVE-9D7D6/2020|20-04-15 +USA/WI-UW-325/2020|MT706432.1|20-04-24 +Scotland/CVR780/2020|20-03-27 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 +England/SHEF-BFF21/2020|20-03-25 +Switzerland/100159/2020|LR884273.1|20-03-16 +England/LOND-126031F/2020|20-03-15 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 +England/BRIS-130965/2020|20-04-13 +Scotland/CVR44/2020|20-03-13 +Scotland/CVR839/2020|20-03-27 +Scotland/CVR207/2020|20-03-18 +England/NORT-284A9B/2020|20-03-25 +Scotland/CVR10/2020|20-03-10 +Spain/H12_46/2020|LR884009.1|20-04-08 +Spain/R11/2020|LR884126.1|20-03-06 +Spain/LP19_4952/2020|LR884066.1|20-03-07 +Scotland/EDB5629/2020|20-03-24 +Scotland/EDB5040/2020|20-04-02 +England/BRIS-123965/2020|20-04-07 +England/BRIS-125347/2020|20-03-27 +IND/Isolate_9088/2020|MW555597.1|20-06-30 +IND/763/2020|MT577009.1|20 +England/CAMB-75BD8/2020|20-03-29 +England/ALDP-944BD9/2020|20-06-07 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 +USA/WI-UW-26/2020|MT706147.1|20-03-24 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 +USA/WI-UW-558/2020|MT750137.1|20-06-25 +England/EXET-1358BE/2020|20-04-15 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 +Scotland/GCVR-172150/2020|20-03-30 +England/BRIS-124885/2020|20-03-24 +England/BRIS-122C4F/2020|20-04-02 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 +Switzerland/100198/2020|LR884312.1|20-03-17 +USA/WI-UW-37/2020|MT706158.1|20-03-22 +Scotland/GCVR-173C30/2020|20-04-07 +England/BRIS-12468B/2020|20-04-09 +England/NORW-E9DF7/2020|20-05-02 +Wales/PHWC-27B20/2020|20-03-30 +Wales/PHWC-2624A/2020|20-03-27 +Wales/PHWC-29E43/2020|20-04-04 +England/LOND-D3534/2020|20-03-27 +England/LIVE-A63E5/2020|20-03-18 +Wales/PHWC-260C8/2020|20-03-26 +Wales/PHWC-16C6F0/2020|20-06-09 +Wales/PHWC-27461/2020|20-03-31 +Wales/PHWC-29F13/2020|20-04-01 +AUS/VIC989/2020|MT451674.1|20-03-31 +AUS/VIC1056/2020|MT451723.1|20-04-03 +England/LIVE-A65EF/2020|20-03-19 +Wales/PHWC-2B7CE/2020|20-04-12 +Scotland/GCVR-1725BE/2020|20-04-04 +Scotland/CVR30/2020|20-03-13 +IND/GBRC99/2020|MT509504.1|20-05-06 +AUS/VIC1239/2020|MT451821.1|20-04-02 +IND/GBRC128/2020|MT539172.1|20-05-02 +IND/GBRC123/2020|MT539176.1|20-05-02 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 +England/CAMB-7BED9/2020|20-04-04 +Netherlands/NA_302/2020|LR878041.1|20-04-01 +England/NORT-289814/2020|20-04-01 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 +England/CAMB-76515/2020|20-03-29 +England/LEED-2A8D10/2020|20-03-31 +England/CAMB-7EBDF/2020|20-04-07 +Scotland/CVR1519/2020|20-04-03 +England/MILK-9589F6/2020|20-06-15 +England/BRIS-128441/2020|20-04-16 +England/NORW-E8C37/2020|20-04-13 +Wales/PHWC-3122E/2020|20-04-10 +Wales/PHWC-1645EC/2020|20-05-10 +England/PHEC-127E8/2020|20-03-28 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 +Scotland/CVR3054/2020|20-04-24 +USA/AK-PHL414/2020|MT946886.1|20-06-03 +England/NORW-E755B/2020|20-05-04 +England/PHEC-20A84/2020|20-04-20 +Scotland/EDB4579/2020|20-05-06 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 +France/10065EE/2020|MT470176.1|20-03 +IND/GBRC174b/2020|MT607610.1|20-06-05 +France/10036BG/2020|MT470106.1|20-03 +IHUCOVID-0033|LR794417.1|? +Switzerland/100210/2020|LR884314.1|20-03-18 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 +AUS/VIC38/2020|MT450953.1|20-03-11 +IHUCOVID-0133|LR794459.1|? +USA/MN67-MDH67/2020|MT911566.1|20-03-14 +Netherlands/NA_292/2020|LR878032.1|20-04-01 +PER/covper091/2020|MW030227.1|20-03-17 +Wales/PHWC-16930B/2020|20-04-01 +Wales/PHWC-34285/2020|20-04-14 +England/BRIS-128DCE/2020|20-04-14 +England/CAMB-1AC7D3/2020|20-04-22 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 +England/LEED-2A87C7/2020|20-04-03 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 +Wales/PHWC-2E0A2/2020|20-04-10 +Scotland/EDB3137/2020|20-04-06 +Scotland/EDB2810/2020|20-03-30 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 +England/CAMB-7771E/2020|20-03-30 +England/CAMB-7DC91/2020|20-04-05 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 +England/BRIS-128CA3/2020|20-04-14 +USA/DC-HP00089/2020|MT509482.1|20-03-31 +USA/UT-03817/2020|MT873871.1|20-04-03 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 +England/BRIS-12D9F2/2020|20-05-06 +England/BRIS-12B156/2020|20-05-08 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 +AUS/VIC1161/2020|MT451779.1|20-04-09 +England/BRIS-129D72/2020|20-04-15 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 +Wales/PHWC-26B12/2020|20-03-29 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 +Scotland/EDB6052/2020|20-05-08 +England/CAMB-7FBCF/2020|20-04-16 +England/CAMB-784BC/2020|20-04-06 +B90|LR898037.1|? +O9|LR963074.1|? +USA/WI-UW-738/2020|MT772509.1|20-06-30 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 +USA/WI-UW-249/2020|MT706376.1|20-03-16 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 +England/PHEC-1C872/2020|20-04-16 +England/BRIS-130015/2020|20-04-11 +USA/UT-04888/2020|MW084559.1|20-05-26 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 +Wales/PHWC-2AF12/2020|20-04-06 +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? +Switzerland/100363/2020|LR884411.1|20-03-20 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 +USA/UT-01683/2020|MT536956.1|20-04-13 +USA/UT-03892/2020|MT711875.1|20-04-13 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 +USA/WA-S1281/2020|MT821642.1|20-05-12 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 +USA/WI-UW-413/2020|MT772562.1|20-04-07 +USA/WI-UW-288/2020|MT706396.1|20-04-08 +England/ALDP-5D3DEC/2020|20-06-19 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 +Scotland/EDB3341/2020|20-04-08 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 +England/LOND-D5444/2020|20-04-15 +Scotland/CVR3238/2020|20-04-26 +Scotland/EDB3662/2020|20-04-28 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 +England/QEUH-544733/2020|20-05-14 +England/OXON-B1781/2020|20-05-04 +England/MILK-977645/2020|20-07-24 +England/CAMB-79ECC/2020|20-04-01 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 +GRC/202_32984/2020|MT459870.1|20-03-12 +GRC/208_33922/2020|MT459876.1|20-03-14 +England/PHEC-1B7C1/2020|20-04-08 +England/ALDP-651C9D/2020|20-07-04 +Scotland/CVR3919/2020|20-06-21 +England/BRIS-12F78D/2020|20-03-10 +Switzerland/100802/2020|LR824314.1|20-03-25 +England/NORT-282972/2020|20-03-27 +England/CAMB-80554/2020|20-04-09 +England/PHEC-20E4C/2020|20-04-16 +England/NORT-283B7B/2020|20-04-02 +England/CAMB-7767B/2020|20-03-31 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 +England/OXON-AEBC7/2020|20-04-12 +England/LOND-D4C6B/2020|20-04-15 +Wales/PHWC-164485/2020|20-05-02 +Northern_Ireland/NIRE-10677D/2020|20-05-14 +Northern_Ireland/NIRE-106740/2020|20-05-14 +England/MILK-9705F4/2020|20-08-18 +England/ALDP-9B6440/2020|20-08-28 +Scotland/EDB6515/2020|20-06-15 +England/CAMB-7620F/2020|20-03-30 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 +England/PHEC-1DF03/2020|20-04-08 +England/CAMB-1AB21F/2020|20-04-18 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 +England/ALDP-68EFBC/2020|20-07-02 +England/PHEC-16F19/2020|20-03-31 +England/GSTT-265D4DF/2020|20-03-19 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 +England/NORT-283BE4/2020|20-04-03 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 +England/BRIS-123EDF/2020|20-04-08 +England/BRIS-123F09/2020|20-04-08 +England/BRIS-12DC53/2020|20-05-02 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 +England/LOND-D53CF/2020|20-04-15 +Scotland/CVR3185/2020|20-04-28 +England/BRIS-127A40/2020|20-04-17 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 +England/CAMB-83A9E/2020|20-04-15 +England/EXET-136ED9/2020|20-04-22 +England/SHEF-CBE43/2020|20-04-26 +POL/PL_P12/2020|MT511068.1|20-03-31 +England/MILK-9E2BDD/2020|20-09-20 +England/PHEC-219E0/2020|20-05-01 +England/LEED-2AA59E/2020|20-04-06 +England/SHEF-C13B7/2020|20-05-19 +England/SHEF-10B2E79/2020|20-05-16 +England/OXON-AEF9E/2020|20-04-07 +Wales/PHWC-162E7A/2020|20-05-19 +England/ALDP-71D072/2020|20-07-01 +England/MILK-9573DB/2020|20-06-10 +England/ALDP-954C6A/2020|20-06-13 +Wales/ALDP-6C3E72/2020|20-07-01 +England/ALDP-5A15D0/2020|20-06-14 +Wales/PHWC-16881C/2020|20-04-21 +England/PHEC-20B81/2020|20-04-16 +England/QEUH-95DD9B/2020|20-08-07 +England/MILK-9570D4/2020|20-06-10 +England/NORT-28B1EA/2020|20-04-18 +England/NORT-28B28D/2020|20-04-18 +England/LIVE-9BC33/2020|20-04-21 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 +England/ALDP-5A2A49/2020|20-06-14 +USA/WA-S1434/2020|MT821707.1|20-05-21 +England/CAMB-80B43/2020|20-04-11 +England/CAMB-7666D/2020|20-03-29 +USA/WA-S2573/2020|MT831840.1|20-06-17 +England/QEUH-96AEF2/2020|20-08-15 +Scotland/CVR1557/2020|20-04-03 +Wales/PHWC-34610/2020|20-04-21 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 +England/CAMB-82E1B/2020|20-04-14 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 +Scotland/EDB300/2020|20-03-29 +England/PHEC-13ADF/2020|20-03-13 +England/NORT-282796/2020|20-03-28 +England/NORT-2839AE/2020|20-04-01 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 +England/ALDP-952A44/2020|20-06-21 +Netherlands/NA_359/2020|LR883961.1|20-04-07 +Netherlands/NA_589/2020|LR883868.1|20-04-05 +Scotland/EDB2049/2020|20-04-18 +Scotland/EDB2100/2020|20-04-19 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 +USA/WI-UW-269/2020|MT429191.1|20-04-06 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 +USA/WA-S1037/2020|MT642186.1|20-05-03 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 +USA/UT-00495/2020|MT444543.1|20-04-02 +USA/UT-00353/2020|MT444564.1|20-03-27 +Scotland/EDB3598/2020|20-04-27 +Scotland/EDB2451/2020|20-04-23 +England/LIVE-A91F7/2020|20-03-25 +England/BRIS-127AD7/2020|20-04-16 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 +IND/GBRC-366a/2020|MT951170.1|20-06-18 +SAU/596/2020|MT755893.1|20-02-18 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 +SAU/578/2020|MT755891.1|20-02-17 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 +Switzerland/300264/2020|LR898541.1|20-10-01 +England/QEUH-963433/2020|20-08-10 +USA/WA-S2264/2020|MT831437.1|20-06-09 +USA/WA-S1922/2020|MT831459.1|20-06-03 +USA/WA-S1775/2020|MT834200.1|20-06-01 +England/LOND-D6EBE/2020|20-04-03 +USA/WA-S860/2020|MT642111.1|20-04-24 +England/BRIS-12A70A/2020|20-05-01 +England/CAMB-77F61/2020|20-04-01 +England/NORW-EE34B/2020|20-03-24 +England/NORW-E8693/2020|20-04-16 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 +England/CAMB-81070/2020|20-04-20 +Scotland/CVR41/2020|20-03-13 +England/NORW-E8709/2020|20-04-18 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 +England/CAMB-7CBD1/2020|20-04-05 +Wales/PHWC-30957/2020|20-04-08 +LC573289.2|20-06 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 +England/CAMB-74D5B/2020|20-03-19 +England/MILK-ACCF27/2020|20-10-21 +England/BRIS-125D67/2020|20-03-29 +England/MILK-8664D7/2020|20-07-17 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 +Wales/PHWC-162751/2020|20-05-27 +England/CAMC-A40F67/2020|20-10-06 +England/QEUH-9B6EAC/2020|20-09-09 +England/NORT-2A4CAE/2020|20-09-17 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 +Northern_Ireland/NIRE-FB369/2020|20-08-31 +England/LEED-2AA4EC/2020|20-04-06 +England/LEED-2AA394/2020|20-03-31 +England/BRIS-1854318/2020|20-04-28 +England/BRIS-12E6FA/2020|20-04-20 +England/WSFT-25C13CB/2020|20-04-17 +England/PORT-2F5D9C/2020|20-06-05 +England/ALDP-5D52BE/2020|20-06-18 +England/ALDP-6FAF24/2020|20-06-29 +England/ALDP-4A2BFC/2020|20-05-22 +England/ALDP-49F5B8/2020|20-05-22 +USA/WA-S2598/2020|MT831859.1|20-06-18 +USA/WA-S820/2020|MT641503.1|20-04-15 +Netherlands/NA_436/2020|LR883367.1|20-04-07 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 +USA/COVID20-0537/2020|MT981422.1|20-06-04 +USA/COVID20-1129/2020|MW067826.1|20-07-10 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 +England/ALDP-94EB75/2020|20-06-17 +England/ALDP-6E2806/2020|20-07-01 +Wales/PHWC-360A7/2020|20-04-29 +Wales/PHWC-260AA/2020|20-03-24 +England/CAMB-72B44/2020|20-03-22 +England/CAMB-822D3/2020|20-04-12 +England/ALDP-49EC3C/2020|20-05-20 +PER/covper024/2020|MW030255.1|20-07-04 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 +PER/covper040/2020|MW030271.1|20-05-05 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 +USA/WI-UW-114/2020|MT706234.1|20-03-30 +England/MILK-ABBF2B/2020|20-10-22 +England/QEUH-96A85E/2020|20-08-14 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_20_general_stats.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,5 @@ +Total Nodes in Tree: 1935 +Total Samples in Tree: 1234 +Total Condensed Nodes in Tree: 10 +Total Samples in Condensed Nodes: 20 +Total Tree Parsimony: 5362
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_aberrant_stats.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,2 @@ +NodeID Issue +241 internal-no-mutations
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_clades_stats.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,623 @@ +clade count +19A 1234 +19B 31 +20A 1119 +20A.EU2 4 +20B 419 +20C 237 +20D 19 +20E.EU1 52 +20F 3 +20G 3 +20H/501Y.V2 4 +20I/501Y.V1 4 +20J/501Y.V3 2 +A 31 +A.1 2 +A.10 2 +A.11 2 +A.12 2 +A.2 8 +A.2.2 2 +A.2.3 2 +A.2.4 2 +A.21 2 +A.23.1 2 +A.28 2 +A.3 2 +A.4 2 +A.5 4 +B 1234 +B.1 1121 +B.1.1.1 20 +B.1.1.10 4 +B.1.1.105 4 +B.1.1.109 2 +B.1.1.111 2 +B.1.1.113 2 +B.1.1.114 38 +B.1.1.115 5 +B.1.1.116 2 +B.1.1.119 418 +B.1.1.12 2 +B.1.1.120 2 +B.1.1.125 2 +B.1.1.128 2 +B.1.1.13 2 +B.1.1.131 2 +B.1.1.132 2 +B.1.1.133 4 +B.1.1.134 2 +B.1.1.136 2 +B.1.1.137 2 +B.1.1.138 2 +B.1.1.139 2 +B.1.1.143 2 +B.1.1.145 2 +B.1.1.147 2 +B.1.1.148 2 +B.1.1.149 2 +B.1.1.151 10 +B.1.1.153 2 +B.1.1.154 2 +B.1.1.155 2 +B.1.1.157 2 +B.1.1.158 2 +B.1.1.16 2 +B.1.1.160 2 +B.1.1.164 2 +B.1.1.165 2 +B.1.1.168 2 +B.1.1.169 2 +B.1.1.170 2 +B.1.1.171 2 +B.1.1.172 2 +B.1.1.174 2 +B.1.1.178 2 +B.1.1.179 2 +B.1.1.180 2 +B.1.1.181 2 +B.1.1.182 2 +B.1.1.184 2 +B.1.1.185 2 +B.1.1.186 2 +B.1.1.187 2 +B.1.1.189 2 +B.1.1.192 2 +B.1.1.193 2 +B.1.1.194 3 +B.1.1.196 2 +B.1.1.198 2 +B.1.1.199 2 +B.1.1.2 2 +B.1.1.20 2 +B.1.1.200 2 +B.1.1.201 2 +B.1.1.203 2 +B.1.1.204 2 +B.1.1.205 2 +B.1.1.207 2 +B.1.1.209 2 +B.1.1.213 2 +B.1.1.214 2 +B.1.1.215 2 +B.1.1.217 6 +B.1.1.218 2 +B.1.1.219 2 +B.1.1.222 2 +B.1.1.224 2 +B.1.1.225 2 +B.1.1.227 2 +B.1.1.228 2 +B.1.1.229 2 +B.1.1.231 2 +B.1.1.232 2 +B.1.1.233 2 +B.1.1.234 2 +B.1.1.235 4 +B.1.1.236 2 +B.1.1.237 8 +B.1.1.238 2 +B.1.1.239 2 +B.1.1.240 2 +B.1.1.241 2 +B.1.1.247 10 +B.1.1.249 2 +B.1.1.25 7 +B.1.1.250 2 +B.1.1.251 2 +B.1.1.253 2 +B.1.1.254 2 +B.1.1.255 2 +B.1.1.256 2 +B.1.1.257 2 +B.1.1.259 2 +B.1.1.26 6 +B.1.1.260 2 +B.1.1.261 2 +B.1.1.263 2 +B.1.1.264 2 +B.1.1.266 2 +B.1.1.270 2 +B.1.1.272 2 +B.1.1.274 2 +B.1.1.275 2 +B.1.1.277 2 +B.1.1.279 2 +B.1.1.28 10 +B.1.1.280 2 +B.1.1.281 4 +B.1.1.283 2 +B.1.1.284 2 +B.1.1.285 2 +B.1.1.286 2 +B.1.1.287 2 +B.1.1.289 2 +B.1.1.290 2 +B.1.1.291 6 +B.1.1.292 9 +B.1.1.293 2 +B.1.1.294 4 +B.1.1.297 2 +B.1.1.298 2 +B.1.1.299 2 +B.1.1.3 2 +B.1.1.300 2 +B.1.1.301 2 +B.1.1.302 2 +B.1.1.303 2 +B.1.1.304 2 +B.1.1.305 2 +B.1.1.307 2 +B.1.1.308 2 +B.1.1.309 2 +B.1.1.310 2 +B.1.1.311 2 +B.1.1.313 2 +B.1.1.314 10 +B.1.1.315 2 +B.1.1.318 2 +B.1.1.32 2 +B.1.1.33 9 +B.1.1.37 2 +B.1.1.38 2 +B.1.1.39 2 +B.1.1.4 28 +B.1.1.41 2 +B.1.1.43 2 +B.1.1.44 2 +B.1.1.47 2 +B.1.1.49 2 +B.1.1.5 2 +B.1.1.50 2 +B.1.1.54 2 +B.1.1.55 2 +B.1.1.56 2 +B.1.1.58 2 +B.1.1.59 2 +B.1.1.61 2 +B.1.1.63 2 +B.1.1.65 2 +B.1.1.67 2 +B.1.1.7 4 +B.1.1.70 2 +B.1.1.71 2 +B.1.1.72 2 +B.1.1.74 2 +B.1.1.77 4 +B.1.1.8 2 +B.1.1.81 2 +B.1.1.83 4 +B.1.1.85 4 +B.1.1.86 2 +B.1.1.89 2 +B.1.1.92 2 +B.1.1.95 2 +B.1.1.96 2 +B.1.1.97 2 +B.1.1.98 2 +B.1.103 2 +B.1.104 2 +B.1.105 2 +B.1.108 1119 +B.1.110 9 +B.1.110.1 2 +B.1.110.2 2 +B.1.110.3 2 +B.1.111 2 +B.1.112 2 +B.1.113 2 +B.1.115 2 +B.1.117 4 +B.1.12 2 +B.1.120 2 +B.1.124 2 +B.1.128 2 +B.1.13 2 +B.1.131 2 +B.1.134 2 +B.1.139 2 +B.1.14 2 +B.1.142 2 +B.1.143 2 +B.1.145 2 +B.1.146 2 +B.1.147 2 +B.1.149 2 +B.1.150 2 +B.1.151 2 +B.1.152 2 +B.1.153 2 +B.1.157 2 +B.1.158 2 +B.1.160 6 +B.1.160.7 2 +B.1.162 2 +B.1.163 2 +B.1.165 2 +B.1.166 2 +B.1.167 2 +B.1.168 2 +B.1.173 2 +B.1.177 25 +B.1.177.10 2 +B.1.177.11 2 +B.1.177.12 2 +B.1.177.13 2 +B.1.177.14 52 +B.1.177.15 2 +B.1.177.16 2 +B.1.177.17 2 +B.1.177.18 2 +B.1.177.19 2 +B.1.177.2 2 +B.1.177.20 2 +B.1.177.21 2 +B.1.177.22 11 +B.1.177.23 2 +B.1.177.24 53 +B.1.177.25 2 +B.1.177.26 2 +B.1.177.3 2 +B.1.177.4 2 +B.1.177.5 2 +B.1.177.6 2 +B.1.177.7 2 +B.1.177.8 2 +B.1.177.9 2 +B.1.178 2 +B.1.179 2 +B.1.180 2 +B.1.181 2 +B.1.182 104 +B.1.187 2 +B.1.188 2 +B.1.189 2 +B.1.190 2 +B.1.195 2 +B.1.197 2 +B.1.198 2 +B.1.199 2 +B.1.2 3 +B.1.201 2 +B.1.205 2 +B.1.206 2 +B.1.207 2 +B.1.208 2 +B.1.209 2 +B.1.210 2 +B.1.213 2 +B.1.214 2 +B.1.215 2 +B.1.216 2 +B.1.218 2 +B.1.22 2 +B.1.220 2 +B.1.221 6 +B.1.221.1 3 +B.1.221.2 2 +B.1.222 2 +B.1.223 2 +B.1.225 2 +B.1.229 2 +B.1.23 2 +B.1.231 2 +B.1.232 2 +B.1.234 2 +B.1.235 2 +B.1.236 2 +B.1.238 2 +B.1.239 2 +B.1.240 2 +B.1.241 2 +B.1.243 2 +B.1.245 2 +B.1.248 2 +B.1.249 2 +B.1.250 2 +B.1.251 2 +B.1.252 2 +B.1.254 3 +B.1.256 2 +B.1.258 20 +B.1.258.10 2 +B.1.258.12 2 +B.1.258.14 2 +B.1.258.16 2 +B.1.258.17 2 +B.1.258.2 3 +B.1.258.3 2 +B.1.258.4 2 +B.1.258.5 2 +B.1.258.6 2 +B.1.258.7 2 +B.1.264 2 +B.1.265 2 +B.1.267 2 +B.1.268 2 +B.1.273 2 +B.1.274 2 +B.1.276 2 +B.1.277 2 +B.1.280 2 +B.1.281 2 +B.1.282 2 +B.1.283 2 +B.1.287 2 +B.1.293 2 +B.1.294 2 +B.1.3 2 +B.1.302 2 +B.1.304 2 +B.1.305 2 +B.1.306 2 +B.1.309 2 +B.1.310 2 +B.1.311 2 +B.1.312 2 +B.1.313 2 +B.1.314 2 +B.1.315 2 +B.1.316 2 +B.1.318 2 +B.1.319 2 +B.1.320 2 +B.1.321 2 +B.1.323 2 +B.1.324 2 +B.1.325 2 +B.1.328 2 +B.1.329 2 +B.1.330 2 +B.1.331 2 +B.1.332 2 +B.1.333 2 +B.1.335 2 +B.1.336 4 +B.1.337 2 +B.1.338 2 +B.1.340 2 +B.1.341 2 +B.1.346 2 +B.1.348 2 +B.1.349 2 +B.1.35 2 +B.1.350 377 +B.1.351 3 +B.1.355 2 +B.1.356 2 +B.1.359 2 +B.1.36 26 +B.1.36.1 2 +B.1.36.10 2 +B.1.36.12 2 +B.1.36.16 2 +B.1.36.17 2 +B.1.36.20 2 +B.1.36.21 2 +B.1.36.23 2 +B.1.36.24 2 +B.1.36.26 2 +B.1.36.27 2 +B.1.36.28 2 +B.1.36.9 2 +B.1.360 2 +B.1.361 2 +B.1.362 2 +B.1.363 2 +B.1.366 2 +B.1.367 2 +B.1.369 2 +B.1.37 2 +B.1.370 2 +B.1.371 237 +B.1.375 2 +B.1.376 2 +B.1.378 2 +B.1.379 2 +B.1.38 2 +B.1.383 2 +B.1.384 2 +B.1.385 2 +B.1.389 2 +B.1.39 2 +B.1.390 2 +B.1.391 2 +B.1.392 2 +B.1.395 4 +B.1.396 2 +B.1.397 2 +B.1.399 2 +B.1.40 2 +B.1.400 4 +B.1.401 2 +B.1.402 2 +B.1.403 2 +B.1.404 3 +B.1.405 2 +B.1.406 2 +B.1.407 2 +B.1.408 2 +B.1.409 2 +B.1.411 2 +B.1.413 2 +B.1.414 2 +B.1.415 2 +B.1.416 4 +B.1.416.1 2 +B.1.418 2 +B.1.419 2 +B.1.421 2 +B.1.423 2 +B.1.425 2 +B.1.426 2 +B.1.427 2 +B.1.429 2 +B.1.431 2 +B.1.433 2 +B.1.435 2 +B.1.436 2 +B.1.437 2 +B.1.438 2 +B.1.439 2 +B.1.44 2 +B.1.440 96 +B.1.441 2 +B.1.442 2 +B.1.443 2 +B.1.444 2 +B.1.446 2 +B.1.447 2 +B.1.448 2 +B.1.450 2 +B.1.452 2 +B.1.453 2 +B.1.454 2 +B.1.457 2 +B.1.460 2 +B.1.462 2 +B.1.465 2 +B.1.466 2 +B.1.467 2 +B.1.468 4 +B.1.469 2 +B.1.470 2 +B.1.471 2 +B.1.472 2 +B.1.474 2 +B.1.477 2 +B.1.479 2 +B.1.480 2 +B.1.481 2 +B.1.483 2 +B.1.485 2 +B.1.487 2 +B.1.489 2 +B.1.491 2 +B.1.492 2 +B.1.493 2 +B.1.494 2 +B.1.495 2 +B.1.496 2 +B.1.497 2 +B.1.499 2 +B.1.5 26 +B.1.500 2 +B.1.501 2 +B.1.502 2 +B.1.503 2 +B.1.504 2 +B.1.505 2 +B.1.507 2 +B.1.508 2 +B.1.509 2 +B.1.512 2 +B.1.513 2 +B.1.514 2 +B.1.515 2 +B.1.516 2 +B.1.517 2 +B.1.519 2 +B.1.521 23 +B.1.523 2 +B.1.525 2 +B.1.6 2 +B.1.67 2 +B.1.69 2 +B.1.70 2 +B.1.76 2 +B.1.77 2 +B.1.78 2 +B.1.79 2 +B.1.8 2 +B.1.81 2 +B.1.88 6 +B.1.88.1 2 +B.1.9.1 2 +B.1.9.2 2 +B.1.9.4 2 +B.1.9.5 2 +B.1.91 2 +B.1.93 2 +B.1.94 4 +B.1.96 2 +B.1.97 2 +B.1.98 2 +B.10 2 +B.11 2 +B.12 2 +B.13 2 +B.15 2 +B.18 2 +B.19 2 +B.20 2 +B.23 3 +B.26 2 +B.27 2 +B.28 2 +B.29 2 +B.3 4 +B.3.1 2 +B.30 2 +B.31 2 +B.32 2 +B.33 13 +B.34 2 +B.35 2 +B.37 2 +B.39 2 +B.4 6 +B.4.4 2 +B.4.5 2 +B.40 2 +B.41 2 +B.45 2 +B.46 2 +B.47 2 +B.48 4 +B.5 2 +B.51 2 +B.52 2 +B.54 26 +B.6 4 +B.6.6 2 +C.1 2 +C.13 2 +C.14 2 +C.16 2 +C.2 2 +C.3 2 +C.4 2 +C.5 2 +C.6 19 +D.2 3 +D.3 2 +G.1 2 +L.2 2 +M.1 2 +N.1 2 +N.3 2 +N.4 2 +P.2 2 +R.1 4 +R.2 2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_mutations_stats.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,3841 @@ +ID occurrence +A1005G 1 +A10070C 1 +A10248G 1 +A10260G 1 +A10286G 1 +A10323G 6 +A10399G 1 +A10417G 1 +A10471G 1 +A10552G 1 +A10720G 1 +A10724G 1 +A10770G 1 +A10781G 1 +A10786G 1 +A1079C 1 +A10829G 1 +A10874G 1 +A10880G 1 +A10904G 1 +A10912G 1 +A10948G 1 +A1096G 1 +A10978T 1 +A10982G 1 +A1098C 1 +A11023G 1 +A11061G 1 +A11120G 1 +A11246T 1 +A11305G 1 +A11348G 1 +A11410G 1 +A11425T 1 +A11430G 2 +A11438G 1 +A11546G 1 +A1154G 1 +A1163T 2 +A11714G 1 +A11730G 1 +A11740T 1 +A11781G 1 +A11782G 4 +A11839G 1 +A11869G 1 +A11923G 1 +A11934T 1 +A1194G 1 +A12075G 1 +A12130G 1 +A12148G 1 +A12174G 1 +A12197C 1 +A1230G 1 +A12358T 1 +A12519G 1 +A12529G 2 +A12547G 1 +A12556G 1 +A12557C 1 +A12557G 1 +A12759G 1 +A12820G 2 +A12850G 1 +A12878G 1 +A12916T 1 +A1291G 1 +A12964G 1 +A13276G 1 +A13315G 1 +A13433G 1 +A13440G 1 +A13512T 1 +A13516G 1 +A13707G 1 +A13712G 2 +A13833G 1 +A13852G 1 +A13863G 1 +A1395G 1 +A14001G 1 +A14012T 1 +A14109G 1 +A14144G 1 +A14328G 1 +A14330G 1 +A14424G 1 +A14691G 1 +A14774G 1 +A14940G 1 +A1515G 1 +A15187G 1 +A15250G 1 +A15276T 1 +A15283G 1 +A15402G 1 +A15477G 1 +A15477T 1 +A15657G 1 +A15753G 1 +A15820G 1 +A1587G 1 +A158G 1 +A15972G 1 +A15984T 1 +A16044T 1 +A16085G 1 +A1610G 1 +A16148G 1 +A16169G 1 +A16179G 1 +A1630C 1 +A16512G 1 +A16541G 1 +A16638G 1 +A16653G 1 +A1673G 1 +A16766G 1 +A16840C 1 +A16872C 1 +A16889G 1 +A16920G 1 +A1699G 1 +A169G 1 +A17429G 1 +A17521G 2 +A1755G 1 +A17612G 1 +A17615G 1 +A17637G 2 +A17691G 1 +A17730G 1 +A17759G 1 +A17799G 1 +A17858G 1 +A1801G 1 +A1807G 1 +A18174G 1 +A18270C 1 +A18366G 1 +A18424G 1 +A18468C 1 +A18500G 1 +A18529G 1 +A18594G 1 +A18616G 1 +A1866G 1 +A18671C 1 +A18671G 1 +A187G 2 +A18818G 1 +A18840G 1 +A18846G 1 +A18902C 1 +A18978G 1 +A1904G 2 +A19080G 1 +A19098G 1 +A19116G 1 +A19137T 1 +A19167G 1 +A1925C 1 +A19387G 1 +A19476G 1 +A19526G 1 +A19540G 1 +A19650G 1 +A19655G 1 +A19674G 1 +A19743C 1 +A19815G 1 +A19821G 1 +A19855G 1 +A1987G 1 +A19899T 1 +A19963G 1 +A20055G 1 +A20092G 1 +A20136G 1 +A2018G 1 +A20262G 1 +A20268G 4 +A20284G 1 +A20284T 1 +A20288G 1 +A2031G 1 +A20355G 1 +A20396G 1 +A20503G 1 +A20511G 1 +A20553G 1 +A20559G 1 +A20622T 1 +A20624T 1 +A20637G 1 +A20649T 1 +A20667G 1 +A20675T 1 +A20716G 1 +A20724G 1 +A20742C 2 +A20742G 1 +A20742T 1 +A20755C 1 +A20826G 1 +A20829G 1 +A20860G 1 +A20916G 1 +A21018G 1 +A2104G 1 +A21062G 1 +A21080C 1 +A21127G 1 +A21131G 1 +A21137G 3 +A21177G 1 +A21231G 1 +A2130T 1 +A21312G 1 +A21352C 1 +A21360C 1 +A2140G 1 +A21464G 1 +A21489C 1 +A21511G 1 +A21515G 1 +A2151G 1 +A2161G 1 +A21625C 1 +A21625G 2 +A21631T 1 +A2166G 1 +A21717G 1 +A2175G 1 +A21794G 1 +A21801C 1 +A21917G 1 +A21944T 1 +A22001G 1 +A22024C 1 +A22052C 1 +A22053C 1 +A22101T 1 +A22108G 1 +A22116G 1 +A22155G 1 +A22182G 1 +A22206G 2 +A22301G 1 +A22320G 1 +A22330G 1 +A22422G 1 +A22438T 1 +A22457G 1 +A22525G 2 +A22528G 1 +A22606G 1 +A22681C 1 +A2271G 1 +A22812C 1 +A22842T 1 +A2285T 1 +A2286G 1 +A22920T 2 +A2292C 2 +A22992G 1 +A23063T 4 +A23064C 3 +A23125T 1 +A23173G 1 +A23207G 1 +A23233G 1 +A23234G 1 +A23299G 1 +A23324T 1 +A23362T 1 +A23403G 3 +A2342G 1 +A23503G 1 +A23503T 1 +A23534T 1 +A23586G 3 +A23588T 1 +A235C 1 +A23631G 1 +A23746G 1 +A23756G 1 +A23756T 1 +A23796G 1 +A23813G 1 +A23869G 1 +A23947G 1 +A23949G 1 +A23989T 1 +A23998G 2 +A24014G 1 +A24062G 1 +A2406G 1 +A24070T 1 +A24129G 1 +A2419G 1 +A24205T 1 +A24232G 1 +A24369T 1 +A24383G 1 +A24478T 1 +A2466G 1 +A2475G 1 +A24775C 1 +A2480G 2 +A24862G 1 +A24879G 1 +A24894C 1 +A25008G 1 +A25048G 1 +A25050T 1 +A25201G 1 +A25255G 1 +A2526C 1 +A2526G 1 +A25327G 1 +A25351T 1 +A25410C 1 +A25442T 1 +A25448G 1 +A25505C 1 +A25505G 1 +A25524G 1 +A25575C 1 +A25575G 1 +A25747C 1 +A2576T 1 +A25800T 1 +A25801T 1 +A25806G 1 +A25814G 1 +A25856C 1 +A25910C 1 +A25910G 1 +A25946C 1 +A25948T 1 +A25971G 1 +A26069G 1 +A26070G 1 +A26097G 1 +A26105G 1 +A26120G 1 +A26126T 1 +A26174C 1 +A26319G 1 +A26332G 2 +A2641G 2 +A26459G 1 +A2647G 1 +A26513G 1 +A26530G 1 +A2655C 1 +A2658G 1 +A26594T 1 +A26664G 1 +A2679G 1 +A26864G 1 +A26864T 1 +A26927G 1 +A2692T 1 +A26986T 1 +A27086T 1 +A27107T 1 +A27137G 1 +A27224G 1 +A27232G 1 +A27237G 1 +A27256G 1 +A27277G 1 +A27359G 1 +A27383T 1 +A27403T 1 +A27489G 2 +A2756G 1 +A27669G 1 +A27674T 1 +A27675C 1 +A27691T 1 +A27700G 1 +A27755T 1 +A2775G 1 +A27778G 1 +A27821G 1 +A27834T 1 +A27865T 1 +A27932G 1 +A27973G 1 +A27979G 1 +A27979T 1 +A27989G 1 +A2805G 1 +A28065C 1 +A28081T 1 +A28111G 1 +A28117T 1 +A28133T 1 +A28165G 1 +A28169G 1 +A28254C 2 +A28254G 1 +A28271G 1 +A28272T 3 +A28273T 2 +A28274G 1 +A28281T 1 +A28304T 1 +A28336G 1 +A28338G 2 +A28356G 2 +A28389T 1 +A28483G 1 +A2848G 1 +A28612G 1 +A28624T 1 +A28699G 1 +A2869G 1 +A28707T 1 +A28715T 1 +A2871C 1 +A28765T 1 +A28841G 1 +A28847T 1 +A28860G 1 +A28877G 1 +A28877T 2 +A28880G 1 +A28900C 1 +A28901G 1 +A28911T 1 +A28955T 1 +A28959G 2 +A29031T 1 +A2903G 1 +A29086T 1 +A29101G 1 +A29115T 1 +A29143G 1 +A29242G 1 +A29350G 1 +A29391G 1 +A29399G 1 +A29424T 1 +A2948G 1 +A29517G 1 +A29521T 2 +A29567G 1 +A29571T 1 +A29622C 1 +A29683T 1 +A29700G 1 +A29752T 1 +A29767C 1 +A29771G 1 +A29780C 1 +A29797G 1 +A3058G 1 +A3069G 1 +A3090T 1 +A3103C 1 +A3120C 1 +A3121C 1 +A3180G 1 +A3260G 1 +A3413T 1 +A3536G 1 +A361G 1 +A3712G 1 +A3740G 1 +A3776G 1 +A3801G 1 +A3841T 1 +A3852T 1 +A3854G 1 +A3867T 1 +A3958G 1 +A3959G 1 +A4015T 1 +A4044C 1 +A408G 1 +A4143G 1 +A4197G 1 +A4198C 1 +A4208C 1 +A4228G 1 +A4236G 1 +A4372C 1 +A4414G 1 +A4457G 1 +A4459G 1 +A4485G 1 +A454G 1 +A4764G 1 +A476G 1 +A4819G 1 +A481G 1 +A4838G 2 +A4870G 1 +A489G 1 +A4928T 1 +A4935G 1 +A4984T 1 +A5040G 1 +A5068G 1 +A5101G 1 +A5128G 1 +A5146G 1 +A5234G 1 +A5264G 1 +A5269G 1 +A5277G 1 +A5353G 1 +A5368G 1 +A538G 2 +A5421G 1 +A544G 1 +A5452G 1 +A5488G 1 +A5538T 1 +A5570G 1 +A5648C 1 +A5650G 1 +A5695G 2 +A5747G 1 +A5780G 2 +A5829G 1 +A5855G 1 +A5877G 2 +A5958G 1 +A5991G 1 +A5999G 1 +A6035G 1 +A6313G 1 +A6319G 1 +A6351C 1 +A6360G 1 +A6366T 1 +A6375G 1 +A6391G 2 +A6414G 1 +A642G 1 +A6441G 2 +A6442G 1 +A6466G 1 +A6512C 1 +A6608G 1 +A6613G 1 +A6616G 2 +A6659G 4 +A6672G 1 +A6707G 1 +A6709G 1 +A6889C 1 +A6900G 1 +A696C 1 +A7031G 1 +A7040T 1 +A716G 1 +A7193G 1 +A7209G 1 +A7291G 2 +A7319G 1 +A7479G 1 +A7483G 1 +A749G 1 +A761G 1 +A7854G 1 +A7863G 1 +A7966G 1 +A8031G 3 +A8040G 1 +A8072G 1 +A8133G 1 +A8233G 1 +A8244G 1 +A8252G 1 +A8374T 1 +A8390G 1 +A8413G 1 +A8565C 1 +A8681G 1 +A8734G 1 +A8773G 1 +A8821G 1 +A8884G 1 +A8993G 1 +A901T 1 +A9204G 2 +A9272C 1 +A9337G 2 +A9361T 1 +A9397G 1 +A9409G 1 +A9433G 1 +A9433T 1 +A9436T 1 +A9483G 1 +A9492C 1 +A963G 1 +A964G 1 +A9650G 1 +A9737G 1 +A9741C 1 +A9750G 1 +A9830G 1 +A9859G 1 +A9935G 1 +A9963T 1 +A9984C 2 +A9997C 1 +C10029T 2 +C10039A 1 +C10039T 1 +C10074T 1 +C10078T 1 +C100T 1 +C10116T 3 +C10128T 1 +C10138T 2 +C10156T 2 +C10228T 2 +C10249T 1 +C10252T 3 +C10277T 3 +C10279T 3 +C10296T 1 +C10301A 1 +C10319T 1 +C10335T 2 +C10341T 1 +C10350T 1 +C10369T 7 +C10376T 5 +C10377T 1 +C10408T 1 +C10440T 4 +C10448T 1 +C10450T 2 +C10456T 2 +C10458T 1 +C10474T 1 +C10507T 3 +C10525T 1 +C10582T 3 +C10594T 1 +C1059T 1 +C1060T 2 +C10615T 2 +C10626T 2 +C1063T 1 +C10641T 2 +C10645T 1 +C10681T 1 +C106T 1 +C10702T 2 +C10712T 1 +C10741T 2 +C10747T 2 +C10755T 1 +C1076T 3 +C10789T 2 +C10815T 2 +C10818T 2 +C10833T 2 +C10834T 1 +C10851T 1 +C10868T 1 +C10956T 1 +C10969T 1 +C10977T 1 +C11001T 1 +C11003T 3 +C11005A 2 +C11008T 1 +C11020T 1 +C11050A 1 +C11050T 1 +C11095T 1 +C11102T 3 +C11109T 4 +C11152T 1 +C11195T 1 +C11224T 1 +C1122T 1 +C11259T 2 +C11308T 2 +C11339T 1 +C11345T 1 +C11379T 2 +C11396A 1 +C11396T 1 +C11455T 1 +C11460T 1 +C11490T 1 +C11494T 2 +C11497T 1 +C1150T 1 +C11514T 1 +C11563T 1 +C11572T 2 +C11575T 1 +C11620T 3 +C1170T 1 +C11747T 5 +C11750T 2 +C11752T 1 +C11757T 1 +C11758T 5 +C11767T 1 +C11779A 1 +C11783A 1 +C11824T 4 +C11866T 2 +C1190T 2 +C11916T 3 +C11919T 1 +C1191A 2 +C1191T 1 +C11941T 1 +C11960T 1 +C11962T 1 +C12025T 1 +C12043T 1 +C12049T 1 +C12053T 1 +C12073T 1 +C12076T 1 +C12085T 1 +C12100T 1 +C12115T 1 +C12116T 2 +C12132T 1 +C12171T 1 +C1218T 2 +C12194T 2 +C12213T 1 +C12225T 1 +C12242T 2 +C12249T 1 +C12294T 1 +C12312T 1 +C12357T 1 +C12374T 3 +C12400T 4 +C12406T 1 +C12439T 1 +C12459T 1 +C12469T 2 +C12473T 2 +C12488T 3 +C12513T 4 +C12525T 4 +C12528A 1 +C12534T 1 +C12559T 1 +C125T 1 +C1263T 1 +C12651T 2 +C12672T 1 +C12710T 2 +C12733T 1 +C12741T 2 +C12747T 1 +C12754T 2 +C12778T 1 +C12781T 2 +C12784T 1 +C12786T 1 +C12789T 2 +C12809T 1 +C12815T 1 +C12854T 1 +C12880T 4 +C1288T 4 +C12890T 1 +C12915T 2 +C12923T 1 +C13009T 1 +C13019T 1 +C1302T 1 +C13051T 2 +C13059T 2 +C13105T 1 +C13115T 1 +C13168T 1 +C13176T 2 +C13247T 1 +C13252T 1 +C13261T 1 +C13264T 1 +C13274T 2 +C13329T 2 +C13335T 4 +C13378T 2 +C13384T 1 +C13452T 1 +C13458T 1 +C1347T 1 +C13487T 1 +C1348T 2 +C13502T 1 +C13515T 1 +C13517T 2 +C13536T 2 +C13554T 1 +C13568T 1 +C13605T 1 +C13620T 2 +C13665T 1 +C13667T 1 +C13671T 2 +C13708A 1 +C13724T 1 +C13730T 3 +C13761T 1 +C1377T 1 +C1380T 1 +C13821T 1 +C1385T 1 +C13860T 2 +C13862T 1 +C13876T 1 +C13883T 1 +C13887T 2 +C13923T 1 +C13945T 1 +C13968T 1 +C13994T 2 +C1403T 1 +C14076T 1 +C14097T 1 +C140T 1 +C14120T 4 +C14177T 1 +C14178T 1 +C14183T 1 +C14184T 1 +C14189T 1 +C1420T 3 +C14220T 3 +C14230A 1 +C14230T 1 +C14235T 1 +C14265T 1 +C1427T 2 +C14318T 1 +C14322T 1 +C14340T 1 +C14352T 1 +C1437T 3 +C14396T 1 +C14407T 2 +C14408T 1 +C14425A 1 +C14491T 1 +C14531T 1 +C1457T 3 +C14585T 1 +C14599T 1 +C14676T 3 +C14697T 1 +C14708T 1 +C1471T 1 +C14724T 7 +C1473T 1 +C14741T 1 +C14757T 1 +C14763T 1 +C14786T 3 +C147A 1 +C147T 3 +C14805T 5 +C1489T 1 +C14925T 1 +C14928T 1 +C14931T 3 +C14937T 4 +C1498T 1 +C15010T 1 +C15024T 1 +C15026T 2 +C15045T 1 +C15081T 1 +C15120T 1 +C1514T 2 +C15154T 1 +C15173T 1 +C1519T 1 +C15237T 1 +C15240T 5 +C15251A 1 +C15274T 1 +C15277T 2 +C15279T 1 +C1528T 1 +C15315T 1 +C15324T 2 +C15346A 1 +C15352T 2 +C1541T 1 +C1545T 1 +C15480T 1 +C15540T 2 +C15579T 1 +C15613T 1 +C15654T 1 +C15656T 1 +C1567T 1 +C15720T 5 +C15738T 1 +C15752T 1 +C15763T 2 +C15774T 1 +C15824T 2 +C15848T 2 +C15933T 1 +C1593T 3 +C1594T 2 +C15951T 1 +C15952T 1 +C15960T 4 +C16017T 1 +C1601T 1 +C16045T 1 +C16049T 1 +C16084T 1 +C16101T 1 +C16111T 2 +C16114T 1 +C16163T 1 +C16173T 1 +C16178T 2 +C16217T 1 +C16230T 1 +C1625T 1 +C16260T 2 +C1627T 2 +C16289T 1 +C1628A 1 +C16293T 2 +C16329T 3 +C16332T 1 +C16362T 2 +C16376T 1 +C16391T 1 +C16393T 3 +C16394T 2 +C16428T 4 +C16457T 1 +C16466T 3 +C16469T 1 +C16568A 1 +C16575T 2 +C16616T 1 +C16626T 1 +C1663T 1 +C16650T 1 +C16658A 1 +C16694A 1 +C16694T 2 +C16726T 1 +C16733T 1 +C16762T 3 +C1684T 2 +C16915T 1 +C16928T 1 +C16946T 1 +C16995T 1 +C16997T 1 +C17000T 1 +C17004T 1 +C17069T 1 +C17074T 1 +C17104T 2 +C17118T 2 +C17119T 1 +C17125T 5 +C17145T 1 +C1714T 1 +C17156T 1 +C17163T 1 +C17172T 1 +C1722T 1 +C17249T 1 +C17304T 1 +C17336T 1 +C1734T 1 +C17410T 3 +C17436T 1 +C17502T 1 +C17518A 1 +C17518T 1 +C17550T 5 +C1758T 1 +C17639T 4 +C17676T 2 +C17678T 2 +C17690T 2 +C17733T 2 +C17745T 1 +C17746T 2 +C17747T 1 +C17750T 1 +C17762T 1 +C17766T 1 +C17795T 1 +C17802T 1 +C17977T 1 +C17999T 1 +C1800A 1 +C18029T 3 +C18032T 3 +C18060T 2 +C18086T 2 +C18110T 1 +C18115T 1 +C18120T 1 +C18129T 2 +C1812T 1 +C18131T 1 +C18167T 1 +C18171T 1 +C18176T 1 +C18183T 2 +C1824T 1 +C18252T 1 +C18267T 2 +C18322T 1 +C18329T 2 +C18377T 1 +C18395T 2 +C18452T 2 +C18463T 1 +C18481T 1 +C18483T 1 +C18486T 1 +C1848T 1 +C18501T 1 +C18508T 2 +C18555T 10 +C18568T 4 +C18570T 1 +C18591T 1 +C18606T 1 +C18647T 2 +C18652T 1 +C18654T 1 +C18676T 1 +C18687T 3 +C18693A 1 +C18695T 1 +C1869T 1 +C186T 2 +C18713T 2 +C18744T 5 +C18747T 2 +C18788T 2 +C18807T 1 +C18828T 1 +C1884T 2 +C18877T 4 +C1887T 1 +C18904T 1 +C18928T 2 +C18981T 4 +C18998T 1 +C19011T 1 +C19029T 1 +C19032T 1 +C19041T 1 +C19066A 1 +C19089T 2 +C1909T 1 +C19113A 1 +C19113T 1 +C1912T 7 +C19145T 2 +C19151T 1 +C19160T 1 +C19164T 4 +C19170T 3 +C1917T 1 +C19185T 5 +C19186T 2 +C19264T 1 +C19269T 2 +C19273T 2 +C19274A 1 +C1929T 2 +C19324A 1 +C19366T 4 +C19367T 1 +C19374T 1 +C19386T 1 +C1938T 1 +C1943T 1 +C19454T 1 +C19488T 1 +C19524T 5 +C19545T 1 +C19572T 1 +C19602T 2 +C1960T 1 +C19610T 1 +C1962T 1 +C1968T 1 +C19698T 1 +C19718T 3 +C1973T 1 +C19763T 1 +C19806T 1 +C19862T 5 +C19884T 1 +C19944T 1 +C19951T 1 +C19955T 1 +C19961T 2 +C19975A 1 +C1997T 2 +C19983T 3 +C2003T 1 +C20089T 1 +C20132T 1 +C20148T 2 +C20178T 1 +C20199T 1 +C20233T 4 +C20259T 1 +C20270T 1 +C20283T 1 +C20316T 1 +C20320T 2 +C20325T 1 +C20368T 1 +C2037T 1 +C20384T 1 +C203T 2 +C20405T 1 +C20429T 1 +C2044T 1 +C20451T 2 +C20468T 1 +C20474T 2 +C2048T 1 +C20544A 1 +C20555T 2 +C2062T 2 +C2065T 1 +C20703T 1 +C20736T 1 +C20740A 1 +C20759T 1 +C20762T 2 +C20823T 1 +C20844T 2 +C20936T 1 +C20941T 1 +C20946T 2 +C20970T 1 +C21005T 1 +C21017T 1 +C21034T 1 +C21058T 2 +C2106T 1 +C21077T 1 +C2113T 4 +C21145T 1 +C21205T 1 +C21219T 1 +C21234A 1 +C21234T 1 +C21302T 3 +C21304A 3 +C21304T 1 +C21306T 1 +C21310A 1 +C2135T 1 +C21364T 2 +C21365T 2 +C21431T 1 +C2143T 1 +C21588T 1 +C21590T 1 +C21595T 1 +C21597T 2 +C21614T 8 +C21618T 1 +C21621A 1 +C21627A 1 +C21635T 2 +C21637T 3 +C21638T 3 +C21639T 1 +C21646T 2 +C21648T 1 +C21660A 1 +C21682T 2 +C21721T 1 +C21731T 1 +C21742T 2 +C21757T 1 +C21762T 1 +C21772T 4 +C21780T 1 +C21789T 2 +C21801A 1 +C21811T 2 +C21844T 1 +C21846T 5 +C21855T 5 +C21910T 3 +C21952T 2 +C2197T 1 +C21997T 1 +C21998T 2 +C22000T 2 +C22033A 2 +C22075T 1 +C22088T 1 +C22096T 1 +C22097T 1 +C22120T 1 +C22127T 1 +C22208T 3 +C22210T 1 +C22224T 1 +C22227T 4 +C22264T 4 +C22286T 1 +C22295T 1 +C222T 4 +C22314T 1 +C22323T 3 +C22326T 2 +C22388T 1 +C22444T 4 +C22445T 1 +C22450T 2 +C22477T 2 +C22480A 1 +C22480T 1 +C22482T 1 +C22498T 1 +C22522T 1 +C2252A 1 +C22664T 1 +C22687T 2 +C22712T 1 +C22713T 4 +C22858T 1 +C22879A 2 +C22938A 1 +C22987T 2 +C22993T 1 +C22995A 1 +C22995T 1 +C22998T 1 +C23029T 2 +C23053T 2 +C23064A 1 +C2306T 1 +C23114T 1 +C23121T 1 +C23127T 1 +C23170T 1 +C23179T 1 +C23185T 1 +C23191T 4 +C23202T 1 +C23208T 1 +C23220A 1 +C23248T 2 +C23266T 1 +C23271A 1 +C2334T 1 +C2340T 1 +C23422T 1 +C23430T 1 +C23453T 1 +C23506T 1 +C23525T 7 +C23536A 1 +C23536T 2 +C23551T 2 +C23557T 1 +C2358T 1 +C23595T 1 +C23604A 5 +C23604G 1 +C23604T 2 +C23625T 1 +C23635T 1 +C23644T 1 +C23655T 1 +C23664T 3 +C23679T 1 +C23683T 2 +C23685T 1 +C23705T 1 +C23707T 1 +C23709T 2 +C23718T 1 +C23730T 1 +C23731T 1 +C23802T 2 +C23854T 2 +C23855T 1 +C2388T 1 +C23893T 1 +C23896T 2 +C23910T 1 +C23929T 2 +C23934T 1 +C2395T 1 +C2399T 1 +C24023T 4 +C24026T 1 +C24031T 1 +C24034T 3 +C24082T 1 +C24106T 3 +C24130T 3 +C24138A 2 +C2416T 2 +C241T 1 +C24258T 1 +C24334T 2 +C2433T 1 +C24370T 2 +C24378T 4 +C24381T 2 +C24382T 2 +C24442T 2 +C2445T 3 +C2453T 3 +C245T 1 +C24621A 1 +C24621T 3 +C2462A 1 +C2462T 1 +C24642T 1 +C2470T 1 +C24718A 1 +C24734T 1 +C24748T 1 +C24844T 1 +C24865T 1 +C2488T 2 +C24904T 4 +C24912T 1 +C24916T 1 +C25000T 1 +C25037T 1 +C25046T 2 +C25047T 1 +C25075T 1 +C2509T 5 +C25117T 1 +C2511T 1 +C25160T 1 +C25162A 1 +C25163A 1 +C25207T 4 +C2523T 2 +C25276A 1 +C25318T 1 +C25349A 1 +C25350T 2 +C2536T 3 +C25386T 1 +C25413T 2 +C25433T 2 +C25460T 1 +C25466A 1 +C25466T 1 +C25469T 1 +C25504G 1 +C25511T 2 +C25516T 1 +C25517T 1 +C25521T 2 +C25528T 2 +C25544T 1 +C25546T 3 +C25553T 4 +C25572T 2 +C25584A 1 +C25584T 3 +C2558T 1 +C25603T 1 +C25611T 1 +C25613G 1 +C25613T 1 +C25614T 2 +C25624T 1 +C25626G 1 +C25626T 1 +C25642T 1 +C25665T 4 +C25667T 3 +C25672T 1 +C25688T 1 +C25692T 1 +C25702T 1 +C2570T 1 +C25710T 3 +C25714T 2 +C25721T 1 +C25728T 5 +C25731T 4 +C25777T 1 +C25791T 3 +C25797T 2 +C25831T 3 +C25844T 3 +C25854T 1 +C25872T 1 +C25886T 1 +C25889T 1 +C25896T 1 +C25904T 9 +C25916T 4 +C25919T 2 +C25931A 1 +C25936T 1 +C25976A 1 +C26010T 1 +C26013T 1 +C26022T 1 +C26029A 2 +C26058T 1 +C26060T 6 +C26088T 1 +C26110T 2 +C26111T 1 +C26139T 1 +C26151T 1 +C26165T 1 +C26177T 1 +C26195T 1 +C26208T 1 +C2623T 1 +C26256T 3 +C26261T 1 +C26270T 4 +C26299T 1 +C26305T 2 +C26313T 1 +C26333T 2 +C26340T 1 +C26370T 1 +C2638T 1 +C26395T 1 +C26404T 1 +C26408T 3 +C26415T 1 +C26447A 1 +C26447T 3 +C2644A 1 +C2644T 1 +C26456T 1 +C26461T 2 +C26464T 1 +C26469T 1 +C26527T 3 +C26534T 1 +C26571T 1 +C26600T 1 +C26607T 1 +C26625T 4 +C26645T 5 +C26681T 8 +C2668T 1 +C26735T 2 +C26768T 1 +C26801G 1 +C26801T 5 +C26822T 2 +C26858T 1 +C26885T 2 +C26894T 3 +C26895T 1 +C26912T 1 +C26936T 1 +C26984T 1 +C26985T 2 +C27002T 1 +C27005T 2 +C27046T 2 +C27059T 3 +C2706T 2 +C27092T 1 +C2710T 1 +C27110T 1 +C27119T 1 +C27128T 2 +C27143T 1 +C27167T 1 +C27213T 4 +C27263T 1 +C27294T 2 +C27297T 1 +C27303A 1 +C27371T 1 +C27393T 1 +C27416T 1 +C27418T 1 +C27429T 1 +C27431T 2 +C27434T 2 +C27476T 1 +C27493T 1 +C27498T 2 +C2749T 1 +C27509T 1 +C27513T 1 +C27519A 1 +C27527T 2 +C27532T 2 +C27567T 1 +C27577T 2 +C27596T 1 +C275T 1 +C27600T 1 +C27603T 3 +C27610T 1 +C27612T 1 +C27630T 2 +C27641T 3 +C27644A 1 +C27657T 1 +C27673T 2 +C27679T 1 +C27684T 2 +C27688T 2 +C27737T 1 +C27741T 3 +C27752T 2 +C27769G 1 +C27769T 1 +C27800A 1 +C27804T 2 +C27807G 1 +C27845T 1 +C27847T 2 +C27849T 2 +C27874T 1 +C27881T 3 +C2788T 1 +C27903T 1 +C27911T 1 +C27920T 2 +C27923T 1 +C27925A 1 +C27944T 2 +C27945T 4 +C27964T 2 +C27970A 1 +C27972T 3 +C27998T 1 +C28005T 2 +C28006T 1 +C28045T 5 +C28057T 1 +C28087T 6 +C28093T 3 +C28099T 3 +C28115T 1 +C28121T 1 +C28153T 2 +C28201T 1 +C28214A 1 +C28256T 2 +C28269T 1 +C28290T 1 +C28292A 2 +C28308G 1 +C28310A 2 +C28310T 3 +C28311T 5 +C28312T 2 +C28315T 2 +C28320T 1 +C28344T 2 +C28348T 1 +C28367T 2 +C2836T 4 +C28377T 1 +C28411T 1 +C2841T 1 +C2842T 1 +C28432T 1 +C28453T 5 +C28472T 1 +C28500T 1 +C28512G 1 +C28512T 1 +C28546A 1 +C28603T 4 +C28609T 1 +C28629T 1 +C28638A 1 +C28651T 2 +C28657T 6 +C28674T 1 +C28697T 2 +C28703G 1 +C28708T 3 +C28720T 1 +C28724T 1 +C28725T 2 +C28732T 1 +C28744T 3 +C28754T 1 +C28760A 1 +C28770T 1 +C28775T 1 +C2878T 1 +C2880T 1 +C28819T 1 +C28821A 2 +C28824T 1 +C28826T 1 +C28830A 1 +C28833T 3 +C28836T 1 +C28844T 1 +C28846T 1 +C28849T 2 +C28854T 15 +C28863T 2 +C28866T 1 +C28868T 2 +C28869T 3 +C28887T 15 +C28890T 3 +C28892T 2 +C28893T 1 +C28896T 1 +C28905T 1 +C28932T 2 +C28940T 1 +C28969T 2 +C28975G 1 +C28977T 1 +C2898T 1 +C29013T 2 +C2902T 1 +C29077T 2 +C29085T 1 +C29095T 6 +C2910T 2 +C29119T 2 +C29144T 1 +C29149T 2 +C29171T 3 +C2918T 1 +C2919T 1 +C29200T 3 +C29203T 1 +C29247T 1 +C29249T 1 +C29253T 1 +C29259T 1 +C29272T 2 +C29274T 2 +C29284T 2 +C29296T 3 +C29311T 2 +C29353T 3 +C29358T 1 +C29362T 1 +C29363T 1 +C29366T 2 +C29367T 1 +C29370G 2 +C29370T 2 +C29376T 1 +C2937T 1 +C2939T 4 +C2940T 2 +C29421T 4 +C29445T 2 +C29451T 1 +C29466T 1 +C2947T 1 +C29503T 1 +C29509T 1 +C29518T 1 +C29523T 1 +C29529T 1 +C29535T 1 +C29541T 3 +C29546T 1 +C29555T 4 +C29572T 1 +C29580T 1 +C29585T 1 +C29592T 1 +C29614T 6 +C29625T 3 +C29635T 1 +C29642T 2 +C29668T 1 +C29675T 1 +C29679T 1 +C29686T 3 +C29708T 2 +C29719T 2 +C29722T 2 +C29730G 1 +C29733T 2 +C29738T 3 +C29739T 3 +C29741T 1 +C29743T 2 +C29750T 6 +C29754T 2 +C29762G 1 +C29762T 1 +C29769T 2 +C29774T 2 +C29784T 2 +C2983T 1 +C3015T 1 +C3037T 2 +C3041A 1 +C3044T 2 +C3045T 1 +C3093T 1 +C3096T 5 +C3099T 2 +C313T 3 +C3141A 1 +C3141T 1 +C3165T 1 +C3170T 1 +C3177T 2 +C3261T 2 +C3264T 2 +C3267T 1 +C335T 2 +C3373A 1 +C337T 1 +C3397T 1 +C3411T 6 +C3426T 1 +C3429T 1 +C344T 1 +C346T 1 +C3487T 1 +C3511T 1 +C3535T 1 +C3587T 1 +C3602T 3 +C3619T 1 +C3622T 2 +C3634T 1 +C3653T 1 +C3695T 1 +C3698T 1 +C3736T 3 +C3737T 2 +C3738T 1 +C3768T 3 +C3777T 1 +C379A 1 +C379T 1 +C3811T 2 +C3817T 2 +C3828T 3 +C3874T 1 +C3884T 1 +C3885T 1 +C390T 1 +C3961T 2 +C4002T 2 +C4012T 1 +C401T 1 +C4021T 1 +C4048T 2 +C4084T 4 +C4113T 4 +C4158T 2 +C4276T 2 +C4320T 2 +C4321T 2 +C4331T 1 +C4391A 1 +C4438T 1 +C4455T 2 +C4456T 4 +C445T 1 +C4534T 1 +C4540T 2 +C4543T 3 +C4551T 1 +C4570A 1 +C4573T 1 +C4577T 1 +C4582T 1 +C4586T 2 +C4596A 1 +C4633T 1 +C4655T 1 +C4668T 1 +C466T 1 +C4672T 1 +C4683T 1 +C4686T 1 +C4698T 1 +C4754T 1 +C475T 1 +C4776T 1 +C4780T 1 +C4784T 1 +C478T 2 +C4794T 1 +C4795T 2 +C4809T 1 +C4824T 1 +C4876T 2 +C4878T 2 +C4886T 1 +C4890T 1 +C4891T 1 +C4893T 1 +C4897T 1 +C4898T 2 +C4918T 1 +C4927T 1 +C4940T 1 +C4965T 3 +C4999T 2 +C5000T 1 +C5020T 1 +C5031T 1 +C506T 1 +C5090T 1 +C512T 1 +C5140T 1 +C5170T 1 +C5175T 3 +C5178T 1 +C5183T 4 +C5184A 1 +C5184T 2 +C5192T 2 +C5221T 2 +C5239T 1 +C5240G 1 +C527T 1 +C5301T 2 +C5310T 1 +C5312T 1 +C5339T 2 +C5365T 2 +C5388A 1 +C5392T 1 +C539T 1 +C5416T 1 +C541T 1 +C5482T 1 +C5493T 1 +C5497T 1 +C5506T 1 +C5512T 1 +C5540A 1 +C5544T 1 +C5548T 2 +C556T 2 +C5575T 2 +C5585A 1 +C5622T 1 +C5672T 1 +C5673T 1 +C5691T 2 +C5694T 1 +C5700A 2 +C5717T 1 +C5724T 1 +C5730T 3 +C5758T 1 +C5777T 1 +C5796T 2 +C5806T 1 +C5812T 1 +C5817T 1 +C5826T 1 +C5833T 1 +C583T 1 +C5878T 1 +C5884T 3 +C5893T 1 +C5907T 3 +C5934T 1 +C593T 4 +C5974T 1 +C5979T 2 +C5986T 3 +C5997T 1 +C6016T 1 +C601T 1 +C6027T 1 +C6033T 1 +C6070T 1 +C6091T 1 +C6114A 1 +C6114T 1 +C6190T 1 +C6195T 1 +C6196T 1 +C619T 1 +C622T 1 +C6268A 1 +C6268T 1 +C6285T 2 +C6286T 2 +C6310A 1 +C6310T 1 +C6312A 2 +C6312T 1 +C6317T 1 +C6336T 4 +C6347T 1 +C6361T 2 +C6385A 1 +C6385T 1 +C6401T 3 +C6402T 1 +C6406T 1 +C643T 2 +C6445T 1 +C6449T 2 +C6472T 1 +C6500T 1 +C6525T 4 +C6538T 1 +C6539T 2 +C6541T 5 +C6543T 1 +C6555T 1 +C6558T 1 +C6568T 1 +C6573T 2 +C6578T 1 +C6582T 2 +C6593T 1 +C6606T 2 +C6627T 4 +C6628T 3 +C6629T 1 +C6633T 2 +C6636T 2 +C6638T 1 +C6651T 1 +C6681T 3 +C6690T 1 +C6696T 3 +C66A 1 +C66T 4 +C6701T 4 +C6723T 1 +C6726T 1 +C6730T 1 +C6738T 1 +C673T 2 +C6762T 1 +C676T 1 +C6781T 2 +C6794T 1 +C6813T 1 +C683T 3 +C6843T 1 +C6861T 1 +C6883T 2 +C6896T 1 +C6941T 1 +C6983T 1 +C6990T 2 +C7011T 1 +C706T 1 +C7081T 1 +C7095T 1 +C7113T 1 +C715T 1 +C7162T 1 +C7169T 1 +C7173T 1 +C7200T 1 +C7224T 1 +C7267T 3 +C7279T 3 +C7303T 1 +C7318T 1 +C7420T 1 +C7423T 2 +C7471T 1 +C7488T 1 +C7504T 1 +C7528T 7 +C7564T 2 +C7600T 1 +C7703T 1 +C7720T 1 +C7728T 3 +C7732T 1 +C7735T 3 +C7749T 1 +C775T 2 +C7764T 2 +C7765T 3 +C7768T 3 +C7815T 1 +C782T 1 +C7834T 2 +C7843T 2 +C7844T 1 +C7851T 1 +C7869T 1 +C7932T 1 +C7945T 1 +C7955T 1 +C7967T 1 +C799T 1 +C8016T 1 +C8025T 2 +C8047T 1 +C8078T 1 +C8090T 1 +C8092T 1 +C8109T 1 +C8139T 1 +C8140T 1 +C815T 3 +C8208T 1 +C823T 6 +C8240T 3 +C8290T 5 +C8293T 2 +C8299T 1 +C829T 3 +C8318A 1 +C8320T 1 +C8326T 2 +C8327T 2 +C832T 1 +C8334T 2 +C8357T 1 +C835T 1 +C8389T 3 +C8394T 1 +C841T 2 +C842T 1 +C854T 1 +C8605T 1 +C8626T 1 +C8637T 1 +C8650T 1 +C8655T 1 +C8664A 1 +C8664T 1 +C8683T 3 +C8697T 1 +C8733T 2 +C8752T 2 +C875T 2 +C8782T 1 +C878T 1 +C8802T 1 +C8814T 1 +C8818T 2 +C882T 2 +C884T 1 +C8895T 1 +C8905T 1 +C8917T 3 +C8947T 1 +C8950T 2 +C8956T 1 +C8964T 1 +C8986T 1 +C8991T 1 +C900T 1 +C9024T 1 +C9072T 1 +C9073T 1 +C9096T 1 +C9112T 1 +C9118T 1 +C9120T 3 +C913T 3 +C9142T 1 +C9165T 2 +C9180T 1 +C9195T 1 +C9207T 1 +C9223T 1 +C9226T 1 +C9246T 3 +C9286T 4 +C9298T 2 +C9319T 2 +C9344T 1 +C934T 1 +C9360T 2 +C936T 2 +C9430T 8 +C9438T 5 +C9448T 1 +C9474T 1 +C9491T 2 +C9510T 1 +C9521A 1 +C9559T 1 +C9561T 1 +C9565T 1 +C9693T 4 +C96T 1 +C9745T 1 +C9803A 1 +C9803T 2 +C9811T 1 +C9857A 1 +C9857T 2 +C9870T 1 +C988T 1 +C9891T 2 +C9907T 2 +C9924T 2 +C9943T 1 +C9967T 2 +C9979T 3 +C9988T 1 +C9996T 2 +G10096A 1 +G10097A 1 +G10105T 1 +G10112T 1 +G10255T 1 +G10256T 1 +G10262A 1 +G10265A 1 +G10324T 1 +G1042T 1 +G10523C 1 +G10540A 1 +G10565A 1 +G105T 1 +G10617A 1 +G10631T 1 +G10688T 1 +G10705T 1 +G10753A 1 +G10754A 1 +G10759T 1 +G10793T 1 +G10850A 1 +G10870T 4 +G10886A 1 +G10902A 1 +G10996T 1 +G11113A 1 +G11132T 1 +G11146T 1 +G11221T 1 +G11230T 5 +G11243T 1 +G11266A 1 +G11266T 1 +G11273A 1 +G11310A 1 +G1135T 1 +G11365A 1 +G11401T 1 +G11410A 1 +G11417T 8 +G1141A 1 +G1141T 1 +G11447A 1 +G1148T 1 +G11521T 3 +G11540T 1 +G11552T 1 +G11596T 3 +G11670A 1 +G11693T 1 +G11708A 1 +G11761T 3 +G11801A 2 +G11837T 1 +G11842A 1 +G11842T 1 +G11851T 1 +G1186A 2 +G11926A 1 +G12031A 1 +G12067T 1 +G12079C 1 +G1210T 2 +G12160T 1 +G12191T 4 +G12202T 2 +G12311T 1 +G12514T 2 +G12550A 1 +G12694A 1 +G12731A 1 +G12769A 1 +G12769T 1 +G12795A 1 +G12832A 1 +G12832T 1 +G12833A 1 +G12845A 1 +G12872A 1 +G12892T 1 +G12907A 1 +G12911A 1 +G12988T 1 +G1298A 2 +G1306T 1 +G13122A 1 +G1319A 1 +G13201T 1 +G1323T 1 +G1325T 1 +G13348T 1 +G1338C 1 +G13397A 1 +G13397T 1 +G13459T 2 +G13513A 1 +G13513T 1 +G13514A 1 +G13604C 1 +G13617T 1 +G13627T 1 +G13713A 1 +G13858T 1 +G13897T 1 +G1397A 1 +G13993T 1 +G14020T 1 +G14055T 1 +G14122T 1 +G14186A 1 +G14187A 1 +G14202T 1 +G14241T 1 +G14245A 1 +G14250T 1 +G14268A 1 +G14294A 1 +G14371A 1 +G14371T 1 +G1440A 1 +G14428T 1 +G14490A 1 +G14528A 1 +G14547A 1 +G14580A 1 +G14580T 1 +G1463A 1 +G1464A 1 +G14656T 1 +G14785A 1 +G14829T 1 +G14857T 1 +G14869A 1 +G14874T 1 +G1495T 1 +G15100T 1 +G15193A 1 +G15193T 1 +G15253A 1 +G15260A 1 +G15260T 1 +G15380T 1 +G15406T 1 +G15438T 4 +G15451T 1 +G15452T 2 +G1550A 1 +G15543T 2 +G15598A 1 +G15652T 1 +G15705A 1 +G15732T 1 +G15766T 1 +G15773A 1 +G1589A 1 +G1589T 1 +G15906T 4 +G15908A 1 +G1590T 1 +G15982T 1 +G1599T 2 +G16014A 1 +G16068T 1 +G16072T 1 +G16075T 1 +G1607A 1 +G16089A 1 +G160T 2 +G16110A 1 +G16117T 1 +G16188T 1 +G16197T 1 +G16236A 1 +G16377T 1 +G16381A 1 +G16425T 1 +G1659A 1 +G1659T 1 +G16647T 4 +G16741A 1 +G16741T 1 +G16813A 1 +G16846T 1 +G16852T 2 +G16853T 1 +G16855T 1 +G16861T 1 +G16912T 2 +G16917T 1 +G16935T 1 +G16968T 1 +G17014T 2 +G17019T 1 +G17027T 1 +G17032A 1 +G17058T 3 +G17122T 1 +G17140T 1 +G17259T 4 +G17261A 1 +G17278T 3 +G17280T 1 +G1729A 2 +G17302T 1 +G17334T 2 +G17338T 1 +G1738T 2 +G17427T 2 +G174T 4 +G17551A 1 +G17572T 1 +G17590T 1 +G17632A 2 +G17721T 3 +G17722T 1 +G17790T 1 +G17808T 1 +G17893T 1 +G17944T 4 +G17964T 2 +G18028T 2 +G18105T 1 +G18148A 1 +G18181A 1 +G18186T 1 +G1820A 4 +G18210T 1 +G18213T 1 +G18255T 1 +G18281A 1 +G18292T 3 +G18315A 1 +G18318T 1 +G18337T 1 +G18380T 1 +G18412T 1 +G1843A 1 +G18462T 1 +G18520A 1 +G18538T 1 +G18546T 1 +G1857T 1 +G18583A 1 +G18583T 1 +G18651T 1 +G18662C 1 +G18670A 1 +G18674A 1 +G1874T 1 +G18756T 1 +G18803T 3 +G18816T 1 +G1882T 1 +G18859T 1 +G18880T 1 +G18898T 1 +G18907T 1 +G18960T 1 +G18972A 1 +G18984T 2 +G18985T 1 +G19009T 1 +G19056T 1 +G19072T 1 +G19086T 4 +G19117T 1 +G1914A 1 +G19174T 1 +G19180T 1 +G19254T 1 +G19398A 1 +G19398T 1 +G19480A 1 +G19480T 1 +G19509A 1 +G19542T 4 +G19549T 1 +G1957T 1 +G1958A 1 +G19635T 1 +G19648T 1 +G19656A 2 +G19670A 2 +G19684A 1 +G19735T 2 +G19816A 1 +G19816T 3 +G19846A 1 +G19872C 1 +G19879A 1 +G19889T 1 +G19891T 1 +G1990T 1 +G19962C 1 +G19962T 2 +G19969A 1 +G19999T 1 +G199T 2 +G20006T 1 +G20060T 1 +G20062T 2 +G20125A 1 +G20134T 1 +G20160T 1 +G20164A 1 +G20238T 1 +G20247T 1 +G20275A 1 +G20275T 1 +G2035T 1 +G20396A 1 +G20476T 1 +G20491A 1 +G204T 3 +G20568A 1 +G20569T 1 +G20578A 1 +G20578T 2 +G20580T 1 +G20623T 1 +G20670A 1 +G20679A 2 +G20679T 3 +G20709T 1 +G2072A 1 +G20752T 1 +G2086T 2 +G20890A 1 +G208T 1 +G20931A 1 +G20940T 1 +G20977T 1 +G20980A 1 +G20991T 1 +G21099T 1 +G210T 2 +G21193T 4 +G21204T 3 +G21210C 1 +G21255C 3 +G21255T 1 +G21295A 1 +G21295T 1 +G21296A 1 +G21305A 2 +G21334T 1 +G2144T 1 +G21468A 1 +G21468T 1 +G21518T 1 +G21538T 1 +G2155T 1 +G21600T 3 +G21604T 2 +G21606T 1 +G21624A 1 +G21624T 2 +G21641T 3 +G2164A 1 +G21724A 1 +G21724T 5 +G21753T 1 +G21770A 1 +G21776T 1 +G21777A 1 +G21778A 1 +G21786T 3 +G21800T 4 +G21809A 1 +G21830C 1 +G21830T 1 +G21853T 1 +G21867T 2 +G21893A 1 +G21917A 1 +G21974C 1 +G21974T 2 +G22017T 1 +G22018T 1 +G22021A 1 +G22021T 1 +G22022A 1 +G22026T 1 +G22051T 1 +G22093A 2 +G22104T 1 +G22112A 1 +G22132T 2 +G22139C 1 +G22154T 1 +G22199T 1 +G22201T 1 +G22203T 1 +G22205C 2 +G22205T 1 +G22225A 1 +G22225T 3 +G22244T 1 +G22256T 1 +G22299A 1 +G22332A 1 +G22332T 1 +G22346T 2 +G22349T 1 +G22363T 1 +G22381T 1 +G22409T 1 +G22468T 2 +G2246A 2 +G22471T 1 +G22484T 1 +G22487C 2 +G22525A 1 +G2258A 1 +G22627A 1 +G22708T 1 +G2272A 1 +G2272T 1 +G22785T 1 +G22801T 2 +G22813T 1 +G2281A 1 +G2282A 1 +G2286A 1 +G22917T 2 +G22918T 3 +G22992A 4 +G22992T 3 +G23006A 1 +G23009T 1 +G23012A 7 +G2305T 1 +G23120T 2 +G23126T 3 +G2324A 1 +G23302A 1 +G23309C 1 +G23311C 1 +G23311T 1 +G23401A 1 +G23401T 2 +G23402A 2 +G23403A 2 +G23426C 1 +G23438T 1 +G23441A 1 +G23501T 1 +G23522A 1 +G23522C 1 +G23587C 1 +G23587T 1 +G23593C 3 +G23593T 1 +G23608T 1 +G23611A 1 +G23611T 1 +G23612A 1 +G23628T 1 +G23675C 1 +G23678T 1 +G23755T 1 +G23782T 1 +G23824T 1 +G23856T 1 +G23868T 4 +G23876A 1 +G23909A 1 +G23948C 1 +G23948T 1 +G2398A 1 +G24007A 1 +G24077T 1 +G2407C 1 +G2407T 1 +G24095T 1 +G24098T 1 +G24102A 1 +G24116A 1 +G24197T 2 +G24199T 1 +G24262T 1 +G242T 1 +G24348T 1 +G24368C 1 +G24368T 2 +G2447T 1 +G24586T 1 +G2468A 1 +G24697A 1 +G24743A 1 +G24755T 1 +G24757T 1 +G24764T 1 +G24781T 2 +G24794T 4 +G24867T 1 +G24872T 1 +G24883T 1 +G248T 1 +G24914C 1 +G24914T 1 +G24926T 3 +G2494A 1 +G24977C 1 +G25012A 1 +G25012T 2 +G25049T 2 +G25062T 1 +G25088T 2 +G25135T 1 +G25166C 3 +G2516T 1 +G25177T 1 +G25186A 1 +G25186T 1 +G25218T 1 +G25244C 1 +G25244T 1 +G25249T 3 +G25250T 1 +G25252T 1 +G2525A 1 +G25266T 1 +G25273T 1 +G25302T 1 +G25311T 4 +G25320T 1 +G25340T 1 +G2534T 1 +G25429A 1 +G25429T 3 +G25437T 3 +G25440A 1 +G25440T 1 +G25444A 1 +G25445T 2 +G25456T 1 +G25459T 1 +G25471C 1 +G25471T 2 +G25494T 4 +G2549A 1 +G25500T 1 +G25523T 3 +G25538T 1 +G25552T 4 +G25555T 1 +G25563C 1 +G25563T 3 +G25595A 1 +G25595T 1 +G25599T 2 +G25606T 2 +G25617T 1 +G25644T 1 +G25681A 1 +G25687A 2 +G25687T 4 +G25690A 1 +G25699T 2 +G25720T 1 +G25740T 1 +G25767T 1 +G25775T 3 +G25776T 1 +G25784T 1 +G25785T 5 +G25793A 1 +G25793T 2 +G25855T 1 +G25894A 1 +G25906C 1 +G25906T 3 +G25907T 2 +G25912T 1 +G25922T 1 +G25947C 3 +G25947T 2 +G25963A 1 +G25970T 1 +G25971A 1 +G25972A 1 +G25979T 1 +G25996A 1 +G25996T 1 +G26020T 1 +G26031T 1 +G26056T 1 +G26062A 1 +G26062T 4 +G26063T 1 +G26113C 1 +G26144A 1 +G26144T 2 +G26152T 1 +G26153T 1 +G26172T 1 +G26173T 1 +G26217T 2 +G26221A 1 +G26230T 1 +G26233T 1 +G26257A 1 +G26262A 1 +G26268T 1 +G26273T 1 +G2635A 1 +G26389T 1 +G26416T 2 +G26426A 1 +G26428T 1 +G26450T 2 +G26458C 1 +G26526T 1 +G26529T 1 +G26550A 1 +G26589C 1 +G2659A 1 +G2659T 4 +G26615T 1 +G26640T 1 +G26648A 1 +G2664A 1 +G26654T 1 +G26690T 1 +G26730T 2 +G26754A 2 +G26787A 1 +G26801C 1 +G26828A 2 +G26828T 1 +G26849T 1 +G26918T 2 +G26937A 1 +G26951A 1 +G26951T 1 +G27008T 1 +G27014T 1 +G27047T 1 +G27084A 1 +G27084T 1 +G27147T 1 +G27160T 1 +G27165T 1 +G271T 1 +G27201T 1 +G27281T 2 +G27327T 1 +G27358T 2 +G27382C 1 +G27382T 1 +G27390C 1 +G27415A 1 +G27420A 1 +G27459T 1 +G27478T 1 +G27506T 2 +G27516A 1 +G27561T 1 +G27583T 2 +G27589A 1 +G27598T 1 +G27604A 1 +G27632T 1 +G27637A 1 +G2764T 1 +G27651C 1 +G27666A 1 +G27666T 1 +G27670T 1 +G27703T 3 +G27708T 1 +G27717A 1 +G27746T 1 +G27754T 1 +G27762C 1 +G27798T 1 +G27806T 2 +G27827A 1 +G27827T 1 +G2782T 1 +G27842T 1 +G27852T 1 +G27857T 1 +G27870T 1 +G27877T 3 +G27882T 1 +G27890T 1 +G27906T 1 +G27915A 2 +G27916T 1 +G27933A 1 +G27933T 1 +G27955A 1 +G27955T 1 +G27962T 1 +G27987T 2 +G27990A 1 +G27996T 2 +G28001C 1 +G28001T 2 +G28003C 1 +G28003T 1 +G28027T 3 +G28044T 1 +G28048A 1 +G28048T 2 +G28056A 1 +G28073T 1 +G28077C 1 +G28077T 2 +G28079A 1 +G28079T 3 +G28083T 4 +G28085T 1 +G28086T 4 +G28109T 1 +G28123T 1 +G28166A 1 +G28167A 2 +G28178T 1 +G28198T 1 +G2819T 1 +G28202A 2 +G28209T 2 +G28221T 1 +G28230T 1 +G28276C 1 +G28280A 1 +G28280C 1 +G28280T 1 +G28300T 1 +G28307A 1 +G28307C 1 +G28307T 1 +G2830A 1 +G28321A 1 +G28321T 3 +G28325A 1 +G28325T 1 +G28337A 1 +G28346T 1 +G28362C 1 +G28371T 1 +G28373T 1 +G28374T 1 +G28375T 1 +G28376T 1 +G28378C 1 +G28378T 5 +G28380A 1 +G28380T 1 +G28396A 1 +G28436T 1 +G28451C 1 +G28476T 1 +G28487A 1 +G28514T 1 +G28541T 1 +G28557T 1 +G28621A 1 +G28628T 4 +G28655A 2 +G28655T 1 +G2867T 1 +G28681A 1 +G28690T 4 +G28703C 2 +G28703T 1 +G28727T 1 +G28745A 1 +G28808T 1 +G28812T 1 +G28817T 1 +G28842T 2 +G28845T 1 +G28851C 1 +G28851T 5 +G28857T 2 +G2885A 1 +G2885T 1 +G28875T 1 +G28878A 1 +G28878C 2 +G28878T 1 +G28881A 5 +G28882A 2 +G28882T 1 +G28883C 2 +G28884T 4 +G28899A 1 +G28899C 1 +G28899T 5 +G28903C 1 +G28903T 3 +G28907A 1 +G28907T 1 +G28913T 1 +G28914T 2 +G28916A 1 +G28917T 1 +G2891A 1 +G28936A 1 +G28936T 1 +G28939T 1 +G28960T 2 +G28968T 1 +G28975C 1 +G28975T 11 +G2900T 1 +G29024T 1 +G29032A 1 +G29044A 1 +G29072T 1 +G29140A 1 +G29179T 3 +G29195T 1 +G29212A 1 +G29227A 5 +G29227T 2 +G29239A 1 +G29254A 1 +G29254T 3 +G29260T 3 +G29290A 1 +G29291A 1 +G29315T 1 +G29332T 1 +G29384T 1 +G29392T 1 +G29395A 1 +G29399A 1 +G29402T 6 +G29422A 1 +G29422T 5 +G29427T 1 +G29431T 1 +G29434C 1 +G29449A 1 +G29449T 2 +G2945A 1 +G29462C 1 +G29468C 1 +G29474T 4 +G29508A 1 +G29511T 2 +G29527T 1 +G29540A 2 +G29543T 3 +G29573A 1 +G29628T 5 +G29639T 1 +G29645T 4 +G29648T 1 +G29688A 1 +G29688T 2 +G29690T 1 +G29692T 2 +G29705T 3 +G29706T 2 +G29711T 1 +G29734C 1 +G29736A 1 +G29736T 2 +G29742A 1 +G29742T 5 +G29744A 1 +G29745A 1 +G29745T 3 +G29747T 5 +G29751C 1 +G29751T 3 +G29755T 4 +G29757T 1 +G29759T 1 +G29764A 1 +G29764T 1 +G29773T 3 +G29777T 1 +G29778T 1 +G29779A 1 +G29779C 1 +G29779T 4 +G2995T 3 +G3056A 1 +G3080A 1 +G3091A 1 +G3122T 1 +G3146A 1 +G3152A 1 +G3155T 1 +G3164T 1 +G3230A 2 +G3231T 2 +G3239A 1 +G3242A 2 +G3250T 1 +G3259T 4 +G3286A 1 +G3287T 1 +G3302A 1 +G3304T 1 +G3323T 1 +G3338T 1 +G3340T 1 +G3403T 2 +G3419A 1 +G3431T 2 +G3433A 1 +G3482A 1 +G3496T 1 +G3527A 1 +G3638A 1 +G3638T 2 +G3689A 2 +G370T 2 +G3755T 1 +G3831A 1 +G3849A 1 +G3871T 4 +G3880A 1 +G3892T 1 +G3896T 1 +G3939A 1 +G3969A 1 +G3971T 1 +G3994A 2 +G3994T 1 +G4006T 1 +G4105A 1 +G4105T 1 +G4148T 1 +G4181T 1 +G419A 1 +G4207A 1 +G4207T 2 +G4232T 1 +G4255A 1 +G4255T 1 +G4285A 1 +G4285T 1 +G4300T 3 +G431A 1 +G4399T 1 +G443A 2 +G4442T 1 +G4504T 1 +G4508A 1 +G4510A 1 +G4510T 2 +G4520T 1 +G4657T 1 +G4720A 1 +G4866T 1 +G487A 1 +G488T 1 +G4904A 1 +G4960T 4 +G4972A 1 +G4975T 1 +G5008T 1 +G5015A 2 +G5029C 1 +G5194T 1 +G5206T 1 +G521T 3 +G5230T 2 +G5234A 1 +G526C 1 +G526T 1 +G529A 1 +G5305A 1 +G5326T 1 +G5329A 1 +G533A 1 +G5425T 1 +G542A 1 +G5504A 1 +G5539A 1 +G5554T 1 +G5572A 1 +G5572T 5 +G5578A 1 +G5629T 3 +G569A 1 +G5716A 1 +G571A 1 +G5830A 1 +G5924A 1 +G5950A 1 +G5950T 1 +G596A 1 +G596T 1 +G6077T 1 +G6125A 1 +G61T 1 +G621A 1 +G625T 1 +G6288T 1 +G6320T 1 +G6344T 1 +G6356A 1 +G6358A 1 +G6387A 1 +G6404T 1 +G6421C 1 +G6443A 1 +G6446T 2 +G6461T 1 +G6476T 1 +G6566T 1 +G6589A 1 +G6617T 1 +G6650T 1 +G6662A 1 +G669T 1 +G675T 1 +G680A 1 +G680T 1 +G6877T 1 +G6884A 1 +G6894T 1 +G6981T 1 +G7037A 1 +G7037T 1 +G7042T 4 +G713A 1 +G7273A 1 +G7295T 1 +G7319A 1 +G7320A 1 +G7328T 1 +G7360T 1 +G7393T 1 +G7405T 1 +G7452T 1 +G7557A 1 +G7675T 2 +G7739T 1 +G7761A 1 +G7798T 4 +G7936A 1 +G7936T 3 +G7954T 2 +G8015A 1 +G8017T 2 +G805A 1 +G8084A 1 +G8102T 1 +G8114A 1 +G8120C 1 +G8131T 3 +G8171A 1 +G8179T 2 +G8213A 1 +G8264T 1 +G8371A 1 +G8371T 1 +G8408A 1 +G840A 1 +G8561A 1 +G8578A 1 +G8578T 1 +G8591T 1 +G8618A 1 +G872A 1 +G872T 1 +G8851A 1 +G8861T 1 +G9049T 2 +G9092A 1 +G9111A 1 +G9130A 1 +G9130T 2 +G9190T 2 +G9220A 1 +G922A 1 +G922T 2 +G9278A 1 +G9314A 1 +G9389A 2 +G9398T 1 +G9425T 1 +G94T 1 +G9526T 2 +G9575A 1 +G960T 1 +G9658T 1 +G9705T 1 +G9738C 1 +G974A 1 +G9802A 1 +G9802T 1 +G9805T 1 +G9928T 4 +G9968T 1 +T10105G 1 +T10190C 1 +T10200C 1 +T10249C 1 +T10288C 1 +T10321C 1 +T10369C 1 +T10376C 1 +T10480C 1 +T10513C 1 +T10561C 1 +T1059C 2 +T10667G 1 +T10732C 1 +T10771C 1 +T10795C 2 +T1088C 1 +T10939C 1 +T1094C 1 +T10960C 1 +T10963A 1 +T10977C 1 +T11008C 1 +T11078C 1 +T11131A 1 +T11152C 1 +T11164G 1 +T11230G 1 +T11449C 1 +T1147C 1 +T11522G 1 +T11638C 1 +T11654C 1 +T11660A 1 +T11698C 1 +T1169C 1 +T1171C 1 +T11764C 1 +T11824C 1 +T11857C 1 +T12134C 1 +T12226C 1 +T12302C 1 +T12655C 1 +T12703C 1 +T12809C 1 +T12925C 1 +T13006C 1 +T13270C 1 +T1333A 1 +T13345C 1 +T1334A 1 +T13417C 1 +T1359C 1 +T13794G 1 +T13827C 1 +T13857C 1 +T13880C 1 +T13914C 1 +T14127C 1 +T14238C 1 +T14313C 2 +T14345C 1 +T1438C 1 +T14408C 2 +T14499C 1 +T14508C 1 +T14610C 1 +T14643C 1 +T14721C 1 +T14745G 1 +T14769C 1 +T14859C 1 +T15156C 1 +T15231C 1 +T15254C 1 +T15264C 1 +T15276A 1 +T15324C 1 +T15354C 1 +T15366C 1 +T15437C 1 +T1543A 1 +T1545C 1 +T15585A 1 +T15624C 1 +T15801C 1 +T15867A 1 +T15933C 1 +T15960C 1 +T15978C 1 +T16059C 1 +T16062C 2 +T16077C 1 +T16138C 1 +T16176C 1 +T16213C 1 +T1623C 1 +T16242A 1 +T16425G 1 +T16456C 2 +T16456G 1 +T16479C 1 +T16521C 1 +T16632C 1 +T16695G 1 +T16743C 1 +T16752G 1 +T1683C 1 +T16857C 1 +T16968G 1 +T16993C 1 +T17014G 2 +T17040C 1 +T17126C 1 +T17142A 1 +T17208C 2 +T17214C 1 +T17247C 1 +T17262C 1 +T17313C 1 +T17427G 1 +T17568C 1 +T17607C 1 +T17688C 1 +T17772C 1 +T1778C 1 +T17835C 1 +T17838C 1 +T17877C 1 +T18029C 1 +T18144C 2 +T181C 1 +T18231C 1 +T18240C 1 +T18309C 1 +T1834C 1 +T18402C 1 +T18417C 1 +T18453C 1 +T1847C 1 +T18488C 1 +T18513A 1 +T18552C 1 +T1863C 1 +T18641C 1 +T18723C 1 +T18736C 1 +T1885A 1 +T18877C 3 +T18907G 1 +T18974G 1 +T18989C 1 +T19035A 1 +T1907G 1 +T1908C 1 +T19143C 1 +T1918C 1 +T1921C 1 +T19232C 1 +T19341C 1 +T1937C 1 +T19473C 1 +T1947C 1 +T19488C 1 +T19527C 1 +T19538C 1 +T19839C 3 +T19893C 1 +T19935C 1 +T19983C 1 +T20037C 1 +T20049C 1 +T20100C 1 +T20196C 1 +T20285C 1 +T20285G 1 +T20362C 1 +T20401C 1 +T20613C 1 +T20764C 1 +T20799C 1 +T20838C 1 +T20976C 1 +T20982C 1 +T20989C 1 +T209C 1 +T21000C 1 +T21033C 1 +T2113C 1 +T2116A 1 +T21206G 1 +T21291C 1 +T21294A 1 +T21294C 1 +T21368C 1 +T21570G 1 +T21600G 1 +T21656C 1 +T21745C 1 +T21752C 1 +T21760C 1 +T21775G 1 +T21802C 1 +T21841A 1 +T21841C 1 +T21890C 1 +T21973C 1 +T21976C 2 +T21982C 1 +T22020C 2 +T22150C 1 +T22162C 1 +T22189C 1 +T22222C 1 +T22287C 1 +T22325C 1 +T22345C 1 +T22369C 1 +T22435C 1 +T22441G 1 +T22468G 1 +T22588C 1 +T22645C 1 +T22672C 1 +T22756C 1 +T22825C 1 +T22843C 1 +T22896C 1 +T22912G 1 +T22917G 4 +T22918G 1 +T2300C 1 +T23031C 1 +T23042C 1 +T23047C 1 +T23062C 1 +T23084C 1 +T23176C 1 +T23227C 1 +T23255C 1 +T23287C 1 +T23296C 1 +T23406C 1 +T23431C 1 +T23480G 1 +T23548C 1 +T23599A 1 +T23605C 1 +T23629G 1 +T23633G 1 +T23686C 1 +T23698A 1 +T23849C 1 +T23905A 1 +T2395C 1 +T23986C 2 +T24027C 1 +T24063C 1 +T24076A 1 +T24076C 1 +T24077A 1 +T24088C 1 +T24097C 1 +T24175C 1 +T241A 1 +T241C 4 +T24202C 1 +T24224C 1 +T242G 1 +T24326C 1 +T24349C 1 +T24364G 1 +T2446C 1 +T24506G 1 +T24739C 1 +T24769C 1 +T24796C 1 +T24805C 1 +T24814C 1 +T2484C 1 +T24910C 1 +T24923C 1 +T24925C 1 +T24991A 1 +T25039C 1 +T25078C 1 +T25088G 1 +T25123C 1 +T25171C 1 +T25303C 1 +T25304C 1 +T25306C 1 +T25312C 1 +T25316C 1 +T2533C 1 +T2537G 1 +T25429G 1 +T2545C 1 +T25473C 2 +T25479A 1 +T25510A 1 +T25519G 1 +T25563G 2 +T25570C 1 +T25577C 2 +T25577G 1 +T25655C 1 +T25705C 1 +T25713C 1 +T25732G 1 +T25783C 1 +T2578C 1 +T25793G 1 +T25904C 1 +T25911G 1 +T25916C 1 +T25949C 1 +T25970G 1 +T25979G 1 +T2597C 1 +T26038C 2 +T26066C 1 +T26094C 1 +T26144G 1 +T26149C 1 +T26156C 1 +T26160C 1 +T26163C 1 +T26171A 1 +T26260G 1 +T26409C 1 +T26424C 1 +T26447C 1 +T26497C 1 +T26510C 1 +T26512C 1 +T26543A 1 +T26604C 1 +T26677C 1 +T26681C 1 +T26729C 1 +T26767C 2 +T26843C 1 +T26876C 2 +T26903C 1 +T26906C 1 +T26972C 2 +T2698C 1 +T27046C 1 +T27134C 1 +T27207C 1 +T27212C 1 +T27216A 1 +T27264G 1 +T27280C 1 +T27299C 2 +T27319C 1 +T27328C 1 +T27346C 1 +T27384C 5 +T27447C 1 +T27484C 4 +T27499C 1 +T27539C 1 +T27576C 2 +T27576G 1 +T27622C 1 +T27634C 2 +T27645A 1 +T27672C 1 +T27685C 1 +T27808C 1 +T27811C 1 +T27824C 1 +T27835C 1 +T27846C 1 +T27851C 1 +T27856C 1 +T27856G 1 +T27866A 1 +T27869C 2 +T27890G 1 +T27900C 1 +T27919C 1 +T27964C 1 +T27988C 1 +T28009C 1 +T28010A 1 +T28026C 1 +T28087C 1 +T28098C 2 +T28110C 1 +T28118C 1 +T28120C 1 +T28124C 1 +T28127C 1 +T28144C 1 +T2815C 1 +T28196C 1 +T28245C 1 +T28250G 1 +T28251G 1 +T28256C 1 +T28277C 1 +T28282A 1 +T28297C 1 +T28340C 1 +T28360C 1 +T2836C 1 +T2845C 1 +T28494C 1 +T28630G 1 +T28688C 1 +T28723C 1 +T2872C 1 +T28759C 1 +T28813G 1 +T28853G 1 +T28854C 4 +T28897C 1 +T28912C 1 +T29010C 1 +T29059C 1 +T29128C 1 +T29148C 1 +T29171C 1 +T29185A 1 +T29194C 1 +T2924C 1 +T29362C 2 +T29449G 1 +T29464C 1 +T29604C 1 +T29661C 1 +T29685G 1 +T29706G 1 +T29750C 1 +T29784C 1 +T29785A 1 +T29793C 1 +T3011C 1 +T3037C 3 +T3049C 2 +T3095C 1 +T3118C 1 +T3127C 1 +T313C 2 +T3154C 1 +T3163C 1 +T3256C 1 +T3334A 1 +T3366C 1 +T3411C 1 +T3499C 1 +T3602C 1 +T3615C 1 +T3616A 1 +T3694C 1 +T3745C 1 +T3766C 1 +T3843C 1 +T3873C 1 +T3873G 1 +T3952C 1 +T4033C 1 +T4057C 1 +T4125C 1 +T4138G 1 +T4149C 1 +T4195A 1 +T4303C 1 +T4324G 1 +T4330C 1 +T4346C 1 +T4369C 1 +T4441C 1 +T445C 1 +T4579A 2 +T4587A 1 +T4660C 1 +T4711C 1 +T4871C 1 +T4888A 1 +T4895C 1 +T490A 1 +T4949C 2 +T5028C 1 +T5059C 1 +T505C 2 +T5092C 1 +T5119C 1 +T511C 1 +T514C 1 +T5161A 1 +T5182C 1 +T5260A 1 +T5335C 1 +T5347C 1 +T5465C 1 +T5471C 1 +T5507A 1 +T5653C 1 +T5674C 1 +T5785A 1 +T5941C 1 +T595C 1 +T6023C 1 +T6025C 1 +T6055C 1 +T6103C 1 +T6141A 1 +T6376A 1 +T6407A 1 +T6579C 1 +T6582A 1 +T658C 1 +T6673C 1 +T682C 1 +T683C 1 +T6892C 1 +T6905G 1 +T6934C 1 +T6949C 1 +T6954C 1 +T6989C 1 +T7009A 1 +T7034C 1 +T7132C 1 +T7168C 1 +T7185C 1 +T7191C 1 +T7225C 1 +T7258C 1 +T7292C 1 +T7332C 1 +T733C 1 +T7396C 1 +T7423C 1 +T7426C 1 +T7438C 1 +T7441C 1 +T7540C 1 +T7549C 1 +T7582C 1 +T760C 1 +T7645C 1 +T772C 1 +T7767C 1 +T7783C 1 +T7792C 1 +T7813C 1 +T7814C 1 +T7816A 1 +T7831A 1 +T7843C 1 +T7884C 1 +T790C 1 +T7919G 1 +T8008C 1 +T8041C 1 +T8082C 1 +T8110C 1 +T8179G 1 +T8296C 1 +T8323C 1 +T833C 1 +T838C 1 +T83C 1 +T8410C 1 +T8416C 1 +T847C 1 +T8559A 1 +T8593C 1 +T8603C 1 +T8634C 1 +T8662C 1 +T8788C 1 +T8800C 1 +T8941C 2 +T8944C 1 +T8983G 1 +T9046C 1 +T9070C 2 +T9107C 1 +T9151C 1 +T9172C 1 +T9195C 1 +T9223C 1 +T9292C 1 +T9352C 1 +T9379A 1 +T9440G 1 +T9477A 1 +T9485C 1 +T961C 1 +T9651G 1 +T9655C 1 +T9694C 1 +T9697C 1 +T9708C 1 +T9742C 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_sample_stats.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1235 @@ +sample parsimony +England/BRIS-1853249/2020|20-04-02 1 +NPL/61-TW/2020|MT072688.1|20-01-13 0 +Wales/PHWC-25B04/2020|20-03-24 1 +Wales/LIVE-A6831/2020|20-03-16 1 +Scotland/EDB1317/2020|20-04-09 2 +Scotland/EDB354/2020|20-03-30 1 +England/SHEF-BFF8B/2020|20-03-25 1 +England/LCST-24D7202/2020|20-06-22 3 +England/SHEF-BFF21/2020|20-03-25 0 +England/LIVE-A4C46/2020|20-03-12 3 +England/SHEF-BFFC7/2020|20-03-25 1 +England/PHEC-1E01E/2020|20-04-03 1 +DP0476/2020|LC571003.1|20-02-16 1 +DP0191/2020|LC570980.1|20-02-15 1 +Switzerland/100159/2020|LR884273.1|20-03-16 1 +England/LOND-126031F/2020|20-03-15 1 +Scotland/EDB046/2020|20-03-15 2 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 1 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 0 +Wales/PHWC-285F4/2020|20-04-01 4 +England/BRIS-130965/2020|20-04-13 2 +Scotland/CVR44/2020|20-03-13 1 +Scotland/CVR839/2020|20-03-27 2 +Scotland/GCVR-170107/2020|20-03-23 3 +Scotland/CVR207/2020|20-03-18 1 +England/NORT-284A9B/2020|20-03-25 2 +Scotland/CVR10/2020|20-03-10 2 +England/EXET-135818/2020|20-04-11 3 +England/BRIS-12EEB6/2020|20-04-22 3 +Scotland/EDB199/2020|20-03-26 2 +England/CAMB-74A09/2020|20-03-18 3 +England/ALDP-9EE3AC/2020|20-05-06 1 +England/CAMB-8042A/2020|20-04-10 1 +England/CAMB-737B8/2020|20-03-30 2 +USA/WA-S885/2020|MT642386.1|20-04-22 2 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 2 +USA/WA3-UW1/2020|MT163716.1|20-02-27 2 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 1 +England/BRIS-1265AA/2020|20-04-10 3 +AUS/NT38/2020|MT641726.1|20 4 +England/LIVE-A5D06/2020|20-03-17 2 +England/LIVE-A065B/2020|20-05-27 6 +France/40002VJ/2020|MT470179.1|20-03 3 +Wales/PHWC-310CA/2020|20-04-11 4 +England/BRIS-123965/2020|20-04-07 2 +England/BRIS-125347/2020|20-03-27 0 +IND/Isolate_9088/2020|MW555597.1|20-06-30 2 +IND/763/2020|MT577009.1|20 0 +England/CAMB-76515/2020|20-03-29 1 +England/CAMB-1AE294/2020|20-04-27 3 +England/LEED-2A8D10/2020|20-03-31 1 +England/CAMB-1AC6F4/2020|20-04-21 3 +Scotland/EDB2049/2020|20-04-18 1 +Scotland/EDB2100/2020|20-04-19 0 +England/CAMB-1AC7D3/2020|20-04-22 1 +England/CAMB-7EBDF/2020|20-04-07 2 +England/MILK-BB0F16/2020|20-11-17 2 +England/CAMC-BBDD4C/2020|20-11-22 5 +Scotland/CVR2381/2020|20-04-13 1 +Scotland/CVR2197/2020|20-04-11 1 +Scotland/CVR3417/2020|20-05-07 3 +Scotland/CVR1519/2020|20-04-03 1 +England/MILK-93B73B/2020|20-06-21 3 +England/MILK-9589F6/2020|20-06-15 2 +England/BRIS-128441/2020|20-04-16 2 +England/CAMB-7C39D/2020|20-04-13 3 +England/NORW-E8C37/2020|20-04-13 1 +England/NORW-E75A6/2020|20-05-04 3 +Wales/PHWC-3122E/2020|20-04-10 1 +Wales/PHWC-1645EC/2020|20-05-10 1 +England/ALDP-50085E/2020|20-06-27 5 +England/PHEC-127E8/2020|20-03-28 0 +England/CAMB-75BD8/2020|20-03-29 1 +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 5 +England/ALDP-9ED9F6/2020|20-05-05 4 +England/ALDP-944BD9/2020|20-06-07 2 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 1 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 1 +USA/WA-S3017/2020|MW474188.1|20-08-15 3 +USA/WA-S2852/2020|MW079820.1|20-09-01 2 +USA/WI-UW-26/2020|MT706147.1|20-03-24 1 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 1 +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 3 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 2 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 2 +USA/WI-UW-558/2020|MT750137.1|20-06-25 0 +AUS/VIC2260/2020|MT972173.1|20-06-22 4 +England/EXET-1358BE/2020|20-04-15 2 +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 5 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 2 +USA/COVID20-0537/2020|MT981422.1|20-06-04 1 +USA/COVID20-1129/2020|MW067826.1|20-07-10 1 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 2 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 1 +USA/WI-UW-269/2020|MT429191.1|20-04-06 2 +England/LEED-2A91D7/2020|20-04-06 3 +England/LEED-2A87C7/2020|20-04-03 1 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 1 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 0 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 1 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 0 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 0 +USA/WA-UW-4105/2020|MT358746.1|20-03-31 2 +USA/WA-UW-2220/2020|MT345839.1|20-03-23 3 +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 7 +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 4 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 2 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 1 +England/CAMB-7A7DF/2020|20-04-02 1 +Netherlands/NA_18/2020|LR878352.1|20-03-09 1 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 1 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 1 +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 3 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 2 +Wales/PHWC-340A9/2020|20-04-20 4 +Wales/PHWC-1667A8/2020|20-05-26 7 +England/CAMB-83FBD/2020|20-04-22 0 +England/CAMB-1AD004/2020|20-04-30 1 +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 4 +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 9 +England/PHEC-14F5D8/2020|20-12-29 9 +Scotland/EDB11343/2020|20-12-26 3 +Scotland/EDB11342/2020|20-12-26 2 +England/QEUH-CAF17D/2020|20-12-15 2 +England/LIVE-DAB556/2020|20-10-18 7 +England/PHEC-14DE93/2020|20-11-11 5 +Wales/PHWC-1658A6/2020|20-05-19 3 +Wales/PHWC-2E0A2/2020|20-04-10 1 +England/ALDP-952A53/2020|20-06-13 3 +England/ALDP-95A745/2020|20-06-13 3 +Scotland/EDB3137/2020|20-04-06 2 +Scotland/EDB2810/2020|20-03-30 2 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 2 +USA/UT-02231/2020|MT444626.1|20-04-15 5 +USA/WA-S2850/2020|MW079819.1|20-09-01 4 +USA/WA-S2746/2020|MT947577.1|20-07-19 0 +USA/WI-UW-879/2020|MT846567.1|20-07-14 3 +USA/UT-05590/2020|MW084605.1|20-06-01 1 +Netherlands/NA_588/2020|LR883860.1|20 1 +Netherlands/NA_583/2020|LR883819.1|20 3 +USA/WA-S2992/2020|MW474166.1|20-08-12 9 +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 5 +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 10 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 0 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 1 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 1 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 1 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 1 +USA/COVID20-0777/2020|MW002812.1|20-06-26 3 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 1 +USA/VA-DCLS-1512/2020|MW197472.1|20-07 4 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 2 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 0 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 8 +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 5 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 1 +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 8 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 2 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 1 +USA/1453xE2/2020|MW521402.1|20-07-05 4 +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 5 +USA/WA-S2867/2020|MW173410.1|20-09-20 5 +England/MILK-6166F0/2020|20-07-05 1 +England/ALDP-9BCA93/2020|20-09-09 3 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 2 +England/CAMC-947D3A/2020|20-07-17 5 +USA/WI-UW-1126/2020|MT929103.1|20-08-13 6 +USA/WI-UW-1071/2020|MT929023.1|20-07-29 4 +USA/VA-DCLS-0481/2020|MT951936.1|20-05 3 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 0 +KOR/YS006/2020|MW345824.1|20-06-04 1 +KOR/YS008/2020|MW345825.1|20-06-07 0 +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 4 +USA/WA-S1037/2020|MT642186.1|20-05-03 2 +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 5 +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 5 +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 3 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 0 +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 3 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 1 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 2 +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 6 +USA/AK-PHL660/2020|MW173157.1|20-06-27 1 +USA/WI-UW-1194/2020|MT981478.1|20-08-11 1 +USA/CA-CZB-3284/2020|MW134086.1|20-07-17 3 +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 4 +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 8 +USA/UT-05592/2020|MW054143.1|20-06-01 4 +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 4 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 0 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 2 +USA/VA-DCLS-1006/2020|MT952676.1|20-06 4 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 1 +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 4 +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 6 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 1 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 1 +USA/UT-00495/2020|MT444543.1|20-04-02 1 +USA/UT-00353/2020|MT444564.1|20-03-27 1 +USA/UT-02970/2020|MW053933.1|20-05-01 2 +USA/UT-08378/2020|MW206039.1|20-05-26 6 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 0 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 3 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 0 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 6 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 2 +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 3 +England/CAMB-7771E/2020|20-03-30 1 +England/CAMB-7DC91/2020|20-04-05 1 +USA/WI-UW-1092/2020|MT929042.1|20-07-27 4 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 1 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 1 +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 4 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 1 +USA/WA-S1266/2020|MT821676.1|20-05-13 3 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 1 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 1 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 1 +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 3 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 2 +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 8 +Scotland/EDB3598/2020|20-04-27 2 +Scotland/EDB2451/2020|20-04-23 1 +England/MILK-9934B2/2020|20-08-26 5 +Switzerland/240029/2020|LR880608.1|20-08-10 1 +England/RAND-12B3F28/2021|21-02-09 0 +England/RAND-12B3CF4/2021|21-02-09 0 +USA/CA-QDX-2817/2020|MW460624.1|20-12-26 3 +USA/CA-QDX-2803/2020|MW460610.1|20-12-26 2 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 19 +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 7 +USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 9 +USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 2 +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 5 +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 7 +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 3 +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 3 +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 3 +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 8 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 1 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 2 +England/MILK-958598/2020|20-06-09 5 +England/ALDP-4F4092/2020|20-06-24 6 +England/LIVE-A91F7/2020|20-03-25 1 +England/CAMB-1AE865/2020|20-04-30 4 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 1 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 1 +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 3 +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 4 +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 3 +USA/IL-UW-385/2020|MT772536.1|20-05-23 4 +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 3 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 1 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 1 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 2 +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 2 +USA/UT-03041/2020|MW053962.1|20-05-01 2 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 1 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 1 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 1 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 2 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 1 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 1 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 1 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 2 +USA/WA-S2725/2020|MT947550.1|20-07-07 7 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 1 +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 5 +USA/WI-UW-994/2020|MT846680.1|20-07-20 0 +England/BRIS-128CA3/2020|20-04-14 2 +England/BRIS-12B1CF/2020|20-05-15 4 +England/BRIS-12C762/2020|20-05-13 3 +England/BRIS-127AD7/2020|20-04-16 1 +USA/WI-UW-491/2020|MT750074.1|20-06-11 2 +USA/WI-UW-522/2020|MT750102.1|20-06-24 0 +USA/DC-HP00089/2020|MT509482.1|20-03-31 1 +USA/UT-03817/2020|MT873871.1|20-04-03 2 +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 2 +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 3 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 1 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 2 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 1 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 1 +England/BRIS-12D9F2/2020|20-05-06 1 +England/BRIS-12B156/2020|20-05-08 1 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 1 +AUS/VIC1161/2020|MT451779.1|20-04-09 2 +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 6 +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 9 +England/OXON-B15A5/2020|20-04-29 4 +England/BRIS-129D72/2020|20-04-15 2 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 2 +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 5 +USA/VA-DCLS-1282/2020|MW067700.1|20-08 8 +USA/COVID20-1144/2020|MW067817.1|20-07-10 1 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 1 +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 2 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 1 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 1 +Wales/PHWC-1662B6/2020|20-06-13 7 +Wales/PHWC-26B12/2020|20-03-29 0 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 1 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 2 +England/BRIS-12BF3E/2020|20-05-09 5 +England/BRIS-12DF1E/2020|20-06-04 4 +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 6 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 2 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 2 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 1 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 0 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 3 +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 9 +USA/VA-DCLS-1517/2020|MW197475.1|20-07 2 +USA/WI-UW-1268/2020|MW035438.1|20-08-25 6 +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 2 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 1 +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 4 +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 2 +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 5 +Scotland/EDB6146/2020|20-05-14 3 +Scotland/EDB6052/2020|20-05-08 0 +England/CAMB-7FBCF/2020|20-04-16 1 +England/CAMB-784BC/2020|20-04-06 1 +England/PHEC-15A73/2020|20-03-29 3 +USA/CA-QDX-796/2020|MW064788.1|20-03-23 3 +B90|LR898037.1|? 1 +O9|LR963074.1|? 2 +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 3 +USA/WI-UW-738/2020|MT772509.1|20-06-30 2 +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 4 +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 2 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 2 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 2 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 1 +England/CAMC-946515/2020|20-07-15 11 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 0 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 3 +BHR/600023154_S29/2020|MW237743.1|20-10-14 9 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 1 +England/ALDP-955F15/2020|20-06-08 1 +England/MILK-9A6856/2020|20-08-31 5 +England/ALDP-94EB75/2020|20-06-17 0 +England/ALDP-6E2806/2020|20-07-01 2 +Scotland/QEUH-969725/2020|20-08-14 2 +England/QEUH-AD1648/2020|20-10-26 5 +USA/WI-UW-249/2020|MT706376.1|20-03-16 2 +USA/WI-UW-84/2020|MT706205.1|20-03-24 3 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 2 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 1 +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 4 +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 5 +England/PHEC-1C872/2020|20-04-16 2 +England/BRIS-130015/2020|20-04-11 1 +USA/UT-04888/2020|MW084559.1|20-05-26 2 +USA/UT-04282/2020|MW084509.1|20-05-14 3 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 0 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 1 +Wales/PHWC-15DFD9/2020|20-05-14 7 +Wales/PHWC-2AF12/2020|20-04-06 1 +England/CAMC-B533A0/2020|20-11-08 8 +England/MILK-9781E9/2020|20-07-29 6 +321398|LR962930.1|20-10-13 1 +England/QEUH-B8053B/2020|20-11-14 1 +IHUCOVID-0441|LR794655.1|? 2 +IHUCOVID-0428|LR794641.1|? 1 +USA/WA-S4490/2021|MW648014.1|21-01-21 2 +USA/WA-S3458/2020|MW494078.1|20-12-07 1 +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? 0 +Switzerland/100363/2020|LR884411.1|20-03-20 0 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 2 +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 3 +England/CAMC-A3E658/2020|20-10-05 11 +England/MILK-A47DDF/2020|20-10-05 11 +England/MILK-5642D2/2020|20-06-10 3 +England/CAMB-1B3593/2020|20-05-26 5 +England/SHEF-CDD62/2020|20-05-27 3 +England/SHEF-10B22B9/2020|20-04-20 1 +England/LOND-DC4E3/2020|20-11-04 5 +England/MILK-99D3AC/2020|20-08-31 5 +IND/GBRC-366a/2020|MT951170.1|20-06-18 1 +IND/GBRC-392b/2020|MT954593.1|20-07-06 7 +Switzerland/310517/2020|LR898824.1|20-10-08 5 +England/MILK-9AB1A1/2020|20-08-31 9 +SAU/596/2020|MT755893.1|20-02-18 1 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 2 +Scotland/QEUH-A9E7BD/2020|20-10-20 1 +Scotland/EDB7778/2020|20-09-16 1 +England/ALDP-B75065/2020|20-11-12 9 +Scotland/QEUH-AD4AFE/2020|20-10-27 9 +SAU/578/2020|MT755891.1|20-02-17 2 +Scotland/EDB6640/2020|20-05-28 6 +England/CAMC-A65DDB/2020|20-10-11 1 +England/CAMC-AAF5A0/2020|20-10-22 3 +England/MILK-A192C8/2020|20-10-01 4 +England/QEUH-9F3FDD/2020|20-09-24 0 +England/MILK-ABBF2B/2020|20-10-22 2 +England/QEUH-96A85E/2020|20-08-14 1 +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 1 +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 1 +England/PHEC-149F0D/2020|20-11-19 0 +England/MILK-BE717A/2020|20-11-29 3 +CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 2 +Scotland/QEUH-BEAF22/2020|20-12-04 5 +England/QEUH-9B703C/2020|20-09-09 3 +England/MILK-970CE0/2020|20-08-18 1 +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 4 +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 4 +England/CAMC-1263B05/2021|21-02-10 11 +England/QEUH-AD3822/2020|20-10-26 4 +England/SHEF-10C9BD2/2020|20-12-20 2 +England/SHEF-10CC3AA/2020|20-12-17 1 +England/MILK-9A94E6/2020|20-09-01 4 +England/MILK-566C5A/2020|20-06-12 0 +England/CAMC-C2CDFC/2020|20-12-07 1 +England/MILK-CAA0EE/2020|20-12-18 1 +England/PHEC-1491AD/2020|20-10-17 3 +England/MILK-A1BC04/2020|20-10-03 10 +England/MILK-97356A/2020|20-08-14 1 +England/CAMC-A649C9/2020|20-10-10 2 +England/MILK-B04890/2020|20-10-24 2 +England/MILK-A230C1/2020|20-10-03 1 +England/TFCI-26FA9B7/2020|20-12-31 0 +England/MILK-B94ACC/2020|20-11-13 1 +England/MILK-EB78C6/2021|21-01-02 2 +England/CAMC-C44338/2020|20-12-10 4 +England/QEUH-96A29C/2020|20-08-13 1 +England/ALDP-9EA6D4/2020|20-09-24 2 +England/MILK-A6AEC4/2020|20-10-09 5 +England/MILK-B889A0/2020|20-11-14 8 +England/ALDP-EEACDD/2021|21-01-03 9 +England/LIVE-DDCD09/2021|21-01-02 16 +USA/VA-DCLS-0229/2020|MT558657.1|20-04 4 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 1 +Scotland/CVR3970/2020|20-08-22 4 +England/MILK-A7D5AB/2020|20-10-13 6 +USA/UT-01683/2020|MT536956.1|20-04-13 2 +USA/UT-03892/2020|MT711875.1|20-04-13 1 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 1 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 2 +USA/WA-S1281/2020|MT821642.1|20-05-12 1 +USA/WA-S2367/2020|MT831837.1|20-06-11 3 +USA/VA-DCLS-0804/2020|MT925987.1|20-07 2 +USA/VA-DCLS-1454/2020|MW067779.1|20-08 4 +England/NORW-E7EBA/2020|20-05-06 3 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 2 +USA/WI-UW-413/2020|MT772562.1|20-04-07 2 +USA/WI-UW-288/2020|MT706396.1|20-04-08 1 +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 2 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 0 +England/MILK-99DB3B/2020|20-08-31 4 +England/ALDP-5D3DEC/2020|20-06-19 0 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 1 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 2 +England/MILK-ACEE55/2020|20-10-21 7 +Switzerland/260079/2020|LR882418.1|20-08-25 6 +Scotland/EDB6391/2020|20-05-13 3 +Scotland/EDB5108/2020|20-03-31 0 +USA/VA-DCLS-0489/2020|MT951943.1|20-05 2 +USA/VA-DCLS-1388/2020|MW067734.1|20-07 5 +Scotland/QEUH-961BB8/2020|20-08-02 3 +Switzerland/250091/2020|LR881897.1|20-08-19 5 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 0 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 1 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 1 +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 4 +USA/WI-UW-1105/2020|MT929055.1|20-07-24 4 +USA/RML-22/2020|MW221270.1|20-08-30 9 +England/MILK-9750EF/2020|20-08-21 2 +England/MILK-9C3D45/2020|20-09-09 2 +England/QEUH-9C7EA8/2020|20-09-11 1 +England/MILK-9A8AB8/2020|20-08-31 1 +England/CAMC-106415F/2021|21-01-15 6 +England/CAMC-C470F2/2020|20-12-10 3 +BHR/740704818/2021|MW661071.1|21-01-26 3 +England/QEUH-E93C6A/2021|21-01-04 6 +Scotland/CVR2931/2020|20-04-22 3 +Scotland/GCVR-172150/2020|20-03-30 0 +England/BRIS-124885/2020|20-03-24 2 +England/BRIS-122C4F/2020|20-04-02 1 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 1 +Switzerland/100198/2020|LR884312.1|20-03-17 1 +USA/WI-UW-1046/2020|MT928999.1|20-07-29 7 +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 7 +Scotland/EDB3341/2020|20-04-08 0 +Scotland/EDB6880/2020|20-04-30 3 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 2 +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 5 +England/ALDP-B252AA/2020|20-11-04 12 +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 3 +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 6 +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 3 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 1 +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 2 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 2 +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 9 +England/LOND-D5444/2020|20-04-15 1 +Scotland/CVR3238/2020|20-04-26 1 +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 8 +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 6 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 1 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 1 +Scotland/EDB3662/2020|20-04-28 1 +England/ALDP-6FB8FB/2020|20-06-29 4 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 1 +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 4 +England/LIVE-A00F3/2020|20-06-04 4 +England/QEUH-544733/2020|20-05-14 2 +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 6 +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 5 +England/MILK-654007/2020|20-07-04 10 +England/OXON-B1781/2020|20-05-04 1 +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 5 +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 7 +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 4 +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 3 +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 4 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 1 +Switzerland/220021/2020|LR882232.1|20-07-27 2 +England/QEUH-96E08F/2020|20-08-18 3 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 1 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 0 +England/MILK-977645/2020|20-07-24 2 +England/CAMC-B325A1/2020|20-11-05 4 +England/CAMC-B34141/2020|20-11-05 13 +England/MILK-A795AF/2020|20-10-14 12 +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 2 +England/PHEC-14F392/2020|20-12-24 4 +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 16 +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 2 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 1 +USA/WA-S2808/2020|MW077495.1|20-08-31 3 +England/CAMC-94C02D/2020|20-07-15 1 +England/MILK-95DBDD/2020|20-06-20 1 +Scotland/CVR3054/2020|20-04-24 2 +England/MILK-95698F/2020|20-06-06 4 +England/CAMB-79ECC/2020|20-04-01 0 +England/PHEC-224A2/2020|20-06-08 4 +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 11 +USA/AK-PHL414/2020|MT946886.1|20-06-03 2 +USA/AK-PHL689/2020|MW173160.1|20-06-29 5 +England/MILK-974596/2020|20-08-17 6 +Switzerland/310363/2020|LR898676.1|20-10-07 5 +Switzerland/300264/2020|LR898541.1|20-10-01 2 +England/QEUH-963433/2020|20-08-10 1 +England/NORW-ECD21/2020|20-05-29 5 +England/NORW-E755B/2020|20-05-04 2 +England/MILK-978626/2020|20-07-30 5 +England/MILK-9A565D/2020|20-09-03 6 +USA/NM-QDX-264/2020|MT806796.1|20-04-30 4 +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 9 +Scotland/EDB1198/2020|20-04-08 3 +England/PHEC-20A84/2020|20-04-20 2 +Scotland/EDB6324/2020|20-06-01 3 +Scotland/EDB4579/2020|20-05-06 2 +England/MILK-ACC08E/2020|20-10-21 7 +Scotland/QEUH-9696CE/2020|20-08-14 3 +England/MILK-9A9F7C/2020|20-08-31 2 +England/OXON-F42364/2020|20-12-18 5 +England/CAMC-A57F03/2020|20-10-09 3 +England/MILK-A7D15C/2020|20-10-13 5 +Wales/PHWC-47F3A5/2020|20-10-07 2 +England/ALDP-A85BCC/2020|20-10-17 2 +England/ALDP-A2FCA3/2020|20-10-05 1 +Scotland/MILK-A69E6B/2020|20-10-09 2 +England/MILK-A7D1A7/2020|20-10-13 2 +England/MILK-A91486/2020|20-10-16 3 +England/ALDP-AA169C/2020|20-10-22 2 +England/MILK-A474DA/2020|20-10-06 1 +England/ALDP-B483EA/2020|20-11-07 3 +England/QEUH-AA0035/2020|20-10-20 1 +AUT/2021006354/2021|MW672357.1|21-02 5 +England/MILK-E7F4C6/2021|21-01-02 2 +England/CAMC-B3582D/2020|20-11-05 2 +England/MILK-A796E8/2020|20-10-14 8 +England/MILK-9C2766/2020|20-09-10 4 +England/ALDP-A95A9F/2020|20-10-19 5 +Northern_Ireland/QEUH-969C53/2020|20-08-14 2 +England/ALDP-9E79B0/2020|20-09-24 6 +England/MILK-B561FE/2020|20-11-06 5 +Scotland/CVR2213/2020|20-04-11 3 +Scotland/CVR1909/2020|20-04-06 3 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 2 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 2 +England/NOTT-10E1B3/2020|20-03-19 3 +USA/WI-UW-37/2020|MT706158.1|20-03-22 1 +Wales/PHWC-360E3/2020|20-04-26 6 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 2 +Netherlands/NA_289/2020|LR878031.1|20-03-31 3 +France/10065EE/2020|MT470176.1|20-03 2 +IND/nimh-19510/2020|MW181843.1|20-05-16 7 +IND/GBRC174b/2020|MT607610.1|20-06-05 1 +France/10036BG/2020|MT470106.1|20-03 0 +IHUCOVID-0033|LR794417.1|? 2 +England/PORT-2D0D4C/2020|20-04-27 4 +Switzerland/100210/2020|LR884314.1|20-03-18 2 +POL/PL_MCB_72/2020|MW273854.1|20-05-10 3 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 1 +Scotland/CVR3629/2020|20-05-24 1 +Scotland/QEUH-5456F9/2020|20-05-13 1 +England/QEUH-9CE80D/2020|20-09-17 6 +England/QEUH-990752/2020|20-08-29 0 +AUS/VIC38/2020|MT450953.1|20-03-11 1 +IHUCOVID-0133|LR794459.1|? 1 +England/PHEC-1555C0/2021|21-01-16 6 +England/MILK-E6578E/2020|20-12-30 4 +England/CAMC-106052A/2021|21-01-16 6 +England/LOND-12F6633/2020|20-12-15 4 +Switzerland/240009/2020|LR880588.1|20-08-07 0 +Switzerland/240084/2020|LR880634.1|20-08-12 4 +USA/MN67-MDH67/2020|MT911566.1|20-03-14 0 +Netherlands/NA_292/2020|LR878032.1|20-04-01 1 +Switzerland/101166/2020|LR824397.1|20-03-31 1 +Switzerland/100154/2020|LR824311.1|20-03-16 1 +PER/covper020/2020|MW030251.1|20-07-03 7 +PER/covper091/2020|MW030227.1|20-03-17 0 +England/CAMB-737D6/2020|20-03-31 1 +England/CAMB-1B08D9/2020|20-05-04 2 +Scotland/CVR2927/2020|20-04-22 3 +Scotland/GCVR-173C30/2020|20-04-07 1 +England/MILK-BB0022/2020|20-11-18 0 +England/MILK-BB0031/2020|20-11-18 0 +England/PHEC-152C73/2020|20-11-16 1 +Scotland/QEUH-96B4E0/2020|20-08-17 3 +England/MILK-9AA782/2020|20-08-31 4 +Scotland/QEUH-9D11C0/2020|20-09-16 1 +England/QEUH-A0077A/2020|20-10-02 3 +England/ALDP-AA0ED1/2020|20-10-22 2 +England/QEUH-A4CF6B/2020|20-10-05 2 +England/ALDP-9BE8B5/2020|20-09-09 1 +Scotland/EDB10724/2020|20-12-04 5 +Scotland/CVR4309/2020|20-09-14 1 +England/CAMC-9DFBC4/2020|20-09-21 2 +England/QEUH-AD1165/2020|20-10-25 3 +England/ALDP-FB5E3E/2021|21-01-11 5 +England/ALDP-E8756E/2021|21-01-04 3 +England/ALDP-A2EAE6/2020|20-10-05 5 +Scotland/QEUH-A636C3/2020|20-10-10 3 +England/QEUH-A76C07/2020|20-10-12 1 +England/MILK-AC7997/2020|20-10-21 1 +Scotland/QEUH-9DC927/2020|20-09-22 3 +Scotland/QEUH-9B75D3/2020|20-09-04 1 +England/QEUH-9B3A8D/2020|20-09-04 2 +England/NORW-F1F9C/2020|20-10-24 6 +England/QEUH-AE4EA4/2020|20-10-27 3 +England/ALDP-9BECB9/2020|20-09-10 1 +Wales/PHWC-16E6A3/2020|20-10-02 4 +England/MILK-9A9D09/2020|20-09-01 1 +England/QEUH-B6C0E9/2020|20-11-11 4 +England/CAMC-AEA62E/2020|20-10-25 1 +England/PHEC-14E15D/2020|20-12-09 1 +England/PHEC-149635/2020|20-10-28 0 +Switzerland/270068/2020|LR882987.1|20-09-02 1 +Switzerland/332169/2020|LR898966.1|20-10-22 2 +England/ALDP-A95DE1/2020|20-10-20 5 +England/ALDP-9E75E9/2020|20-09-25 1 +England/MILK-AC7B0A/2020|20-10-21 4 +England/NOTT-11336A/2020|20-09-16 3 +England/MILK-ABB8D5/2020|20-10-21 2 +England/NORT-2884A8/2020|20-11-22 5 +England/MILK-A799FE/2020|20-10-15 3 +England/CAMC-A417F5/2020|20-10-06 3 +England/QEUH-AE2A48/2020|20-10-26 2 +England/ALDP-A68CF9/2020|20-10-12 1 +England/CAMB-1B6439/2020|20-09-22 2 +England/MILK-9F1898/2020|20-09-25 1 +England/MILK-A7CDC2/2020|20-10-13 2 +England/CAMC-A5845E/2020|20-10-08 5 +England/ALDP-AA10DA/2020|20-10-22 3 +Wales/PHWC-4815AA/2020|20-10-13 1 +England/QEUH-AD0DDB/2020|20-10-26 3 +Wales/MILK-9E3240/2020|20-09-21 2 +England/ALDP-A6CC8C/2020|20-10-14 3 +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 5 +Switzerland/140091/2020|LR824563.1|20-04-18 3 +England/ALDP-49A5AE/2020|20-06-13 3 +England/ALDP-4A2A77/2020|20-05-22 0 +England/BRIS-12755E/2020|20-04-22 3 +England/BRIS-12468B/2020|20-04-09 1 +England/NORW-E9DF7/2020|20-05-02 1 +Scotland/EDB156/2020|20-03-23 3 +Wales/PHWC-27B20/2020|20-03-30 1 +Wales/PHWC-2624A/2020|20-03-27 1 +Wales/PHWC-16930B/2020|20-04-01 1 +Wales/PHWC-34285/2020|20-04-14 2 +USA/UT-08320/2020|MW206019.1|20-05-15 4 +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 3 +Wales/PHWC-2BF8A/2020|20-04-02 3 +Wales/PHWC-29E43/2020|20-04-04 1 +England/LOND-D3534/2020|20-03-27 1 +England/PHEC-20C24/2020|20-04-21 3 +England/CAMB-7D2EA/2020|20-04-06 3 +England/LIVE-A63E5/2020|20-03-18 1 +Wales/PHWC-260C8/2020|20-03-26 2 +England/BRIS-12F969/2020|20-03-30 3 +England/PHEC-2083F/2020|20-04-13 3 +Wales/PHWC-16C6F0/2020|20-06-09 2 +England/QEUH-B2DD0B/2020|20-11-03 12 +England/MILK-A7B0BB/2020|20-10-14 9 +Wales/PHWC-27461/2020|20-03-31 1 +Wales/PHWC-29F13/2020|20-04-01 2 +AUS/VIC989/2020|MT451674.1|20-03-31 2 +AUS/VIC1056/2020|MT451723.1|20-04-03 1 +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 5 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 1 +England/BRIS-12B2BD/2020|20-05-02 5 +England/BRIS-128DCE/2020|20-04-14 1 +England/LIVE-A65EF/2020|20-03-19 1 +Wales/PHWC-2B7CE/2020|20-04-12 2 +IND/GBRC238b/2020|MT676367.1|20-06-12 4 +IND/GBRC209a/2020|MT664202.1|20-06-11 1 +Scotland/GCVR-1725BE/2020|20-04-04 2 +Scotland/CVR30/2020|20-03-13 0 +IND/GBRC99/2020|MT509504.1|20-05-06 1 +IND/GBRC31/2020|MT467247.1|20-04-29 3 +AUS/VIC1239/2020|MT451821.1|20-04-02 1 +AUS/VIC1282/2020|MW153048.1|20-04-08 3 +IND/GBRC128/2020|MT539172.1|20-05-02 1 +IND/GBRC123/2020|MT539176.1|20-05-02 2 +POL/PL_MCB_32/2020|MW273814.1|20-04-22 3 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 0 +England/CAMB-7BED9/2020|20-04-04 2 +Netherlands/NA_302/2020|LR878041.1|20-04-01 1 +England/NORT-289814/2020|20-04-01 2 +England/ALDP-9ED57A/2020|20-05-08 3 +USA/WI-UW-1385/2020|MW035549.1|20-09-06 5 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 1 +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 4 +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 3 +Scotland/CVR129/2020|20-03-13 1 +Scotland/CVR52/2020|20-03-14 1 +England/ALDP-94D8D9/2020|20-06-20 2 +England/ALDP-9442D4/2020|20-06-07 3 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 2 +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 5 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 1 +GRC/202_32984/2020|MT459870.1|20-03-12 0 +GRC/208_33922/2020|MT459876.1|20-03-14 0 +England/CAMC-947875/2020|20-07-13 4 +England/PORT-2D3B4F/2020|20-04-18 5 +England/EXET-136EE8/2020|20-04-20 3 +Northern_Ireland/NIRE-FB967/2020|20-08-17 3 +England/QEUH-7A4BBB/2020|20-07-14 1 +USA/WA-S2264/2020|MT831437.1|20-06-09 2 +USA/WA-S1922/2020|MT831459.1|20-06-03 1 +Wales/PHWC-360A7/2020|20-04-29 2 +Wales/PHWC-260AA/2020|20-03-24 1 +England/BRIS-185470D/2020|20-05-01 0 +England/BRIS-12AF02/2020|20-05-01 1 +England/CAMB-83FF9/2020|20-04-25 2 +England/CAMB-75895/2020|20-03-18 2 +USA/WA-S2012/2020|MT831128.1|20-06-04 8 +USA/WA-S1775/2020|MT834200.1|20-06-01 1 +England/ALDP-B82A0D/2020|20-11-14 1 +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 3 +England/MILK-11A5634/2021|21-01-29 5 +GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 2 +England/LOND-D6EBE/2020|20-04-03 2 +England/SHEF-C88A2/2020|20-04-21 4 +USA/WA-S860/2020|MT642111.1|20-04-24 2 +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 8 +England/QEUH-A0AFB4/2020|20-10-01 8 +England/ALDP-C48747/2020|20-12-12 11 +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 10 +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 8 +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 1 +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 1 +Switzerland/230051/2020|LR882355.1|20-08-04 3 +Wales/MILK-9C729D/2020|20-09-12 4 +England/BRIS-12A70A/2020|20-05-01 1 +England/CAMB-77F61/2020|20-04-01 1 +England/PHEC-215FB/2020|20-04-29 3 +England/PHEC-1B7C1/2020|20-04-08 0 +Switzerland/120182/2020|LR860799.1|20-04-27 5 +England/ALDP-9545BA/2020|20-06-17 12 +England/ALDP-651C9D/2020|20-07-04 2 +Scotland/CVR3919/2020|20-06-21 1 +England/ALDP-9558ED/2020|20-06-12 1 +England/NORT-286255/2020|20-09-16 3 +England/BRIS-12F78D/2020|20-03-10 1 +Switzerland/100802/2020|LR824314.1|20-03-25 2 +England/NORT-282972/2020|20-03-27 0 +England/CAMB-80554/2020|20-04-09 1 +PHL/UPMNIH_C1/2020|MW243995.1|20-07 10 +PHL/COVID-6009/2020|MT919790.1|20-07-18 4 +England/PHEC-20E4C/2020|20-04-16 2 +England/NORT-283B7B/2020|20-04-02 2 +England/ALDP-95665B/2020|20-06-08 3 +England/CAMB-7767B/2020|20-03-31 2 +England/CAMC-94328A/2020|20-07-25 0 +England/CAMC-9424A3/2020|20-07-21 0 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 0 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 7 +England/MILK-A79D10/2020|20-10-15 4 +England/PHEC-148F95/2020|20-10-15 4 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 2 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 1 +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 3 +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 4 +USA/VA-DCLS-1485/2020|MW205988.1|20-07 3 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 2 +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 4 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 0 +Switzerland/250060/2020|LR881882.1|20-08-18 4 +England/QEUH-A77F0D/2020|20-10-12 6 +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 3 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 1 +England/QEUH-9AE4E1/2020|20-09-01 2 +England/MILK-A180DE/2020|20-10-01 3 +England/OXON-AEBC7/2020|20-04-12 1 +England/QEUH-96E27A/2020|20-08-20 3 +England/MILK-74C001/2020|20-06-29 2 +England/LOND-D4C6B/2020|20-04-15 2 +Wales/PHWC-164485/2020|20-05-02 1 +England/ALDP-5C701F/2020|20-06-19 2 +England/ALDP-51F142/2020|20-06-02 0 +England/ALDP-955FAC/2020|20-06-08 5 +England/ALDP-49E391/2020|20-05-20 1 +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 7 +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 2 +England/LOND-126DFA5/2020|20-12-27 7 +Wales/PHWC-4846A4/2020|20-10-24 8 +Northern_Ireland/NIRE-10677D/2020|20-05-14 1 +Northern_Ireland/NIRE-106740/2020|20-05-14 2 +England/SHEF-C9FBB/2020|20-04-11 4 +England/LOND-D6531/2020|20-04-22 3 +England/MILK-9705F4/2020|20-08-18 1 +England/ALDP-9B6440/2020|20-08-28 0 +England/MILK-99D597/2020|20-08-30 6 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 0 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 8 +Scotland/EDB6515/2020|20-06-15 0 +England/NORW-222D0F/2020|20-12-20 8 +England/MILK-F72F49/2021|21-01-05 10 +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 6 +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 5 +England/NORW-EE34B/2020|20-03-24 1 +England/NORW-E8693/2020|20-04-16 2 +England/QEUH-AD487C/2020|20-10-26 3 +England/QEUH-9B7B2C/2020|20-09-03 2 +Switzerland/250070/2020|LR881870.1|20-08-18 2 +England/QEUH-9B5344/2020|20-09-02 2 +England/ALDP-6839B9/2020|20-07-02 1 +England/ALDP-6BAB59/2020|20-06-29 2 +FRA/Env-Di/2020|MT709105.1|20-05-14 3 +AUS/VIC1786/2020|MT612326.1|20-05-27 6 +England/CAMB-7620F/2020|20-03-30 2 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 2 +Scotland/QEUH-96C6AD/2020|20-08-07 6 +Switzerland/270108/2020|LR882077.1|20-09-03 5 +England/PHEC-1DF03/2020|20-04-08 2 +England/CAMB-1AB21F/2020|20-04-18 2 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 2 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 1 +England/QEUH-9DE381/2020|20-09-21 8 +England/QEUH-95E7D8/2020|20-08-06 3 +England/NOTT-111E3E/2020|20-06-10 5 +England/NOTT-111117/2020|20-05-03 0 +England/ALDP-68EFBC/2020|20-07-02 1 +England/ALDP-91F278/2020|20-06-23 3 +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 4 +USA/WI-UW-1202/2020|MW035373.1|20-08-06 3 +England/PHEC-16F19/2020|20-03-31 1 +England/GSTT-265D4DF/2020|20-03-19 0 +England/LIVE-A2765/2020|20-05-20 3 +England/ALDP-658C87/2020|20-07-03 3 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 2 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 2 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 1 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 1 +England/NORT-283BE4/2020|20-04-03 1 +England/CAMB-81070/2020|20-04-20 1 +England/CAMB-72B44/2020|20-03-22 0 +England/CAMB-822D3/2020|20-04-12 0 +England/ALDP-94DD07/2020|20-06-19 4 +England/ALDP-49EC3C/2020|20-05-20 2 +PER/covper024/2020|MW030255.1|20-07-04 2 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 2 +PER/covper011/2020|MW030242.1|20-07-04 5 +PER/covper040/2020|MW030271.1|20-05-05 2 +England/MILK-B1553B/2020|20-10-23 10 +England/MILK-66F889/2020|20-07-03 4 +USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 4 +England/LOND-12F65DC/2021|21-01-19 11 +Switzerland/310500/2020|LR898805.1|20-10-08 4 +Switzerland/300433/2020|LR898634.1|20-09-29 1 +England/QEUH-96BAA2/2020|20-08-14 3 +Wales/ALDP-B19FFD/2020|20-11-01 6 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 0 +PER/covper018/2020|MW030249.1|20-07-03 3 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 2 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 0 +England/BRIS-123EDF/2020|20-04-08 1 +England/BRIS-123F09/2020|20-04-08 1 +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 8 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 0 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 0 +Scotland/CVR41/2020|20-03-13 1 +England/CAMC-AEACFF/2020|20-10-25 7 +England/PHEC-149FA3/2020|20-11-20 5 +England/QEUH-C9332B/2020|20-12-17 3 +England/MILK-9A699F/2020|20-09-01 8 +England/CAMC-C3E586/2020|20-12-10 6 +England/CAMC-DE5550/2020|20-12-29 4 +England/ALDP-9ECEAD/2020|20-05-05 4 +England/BRIS-12DC53/2020|20-05-02 2 +Scotland/QEUH-7B078B/2020|20-07-19 2 +England/MILK-993EA5/2020|20-08-22 3 +England/BRIS-124C89/2020|20-03-26 3 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 1 +England/ALDP-A525BB/2020|20-10-07 5 +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 6 +England/MILK-A45AF8/2020|20-10-06 5 +Scotland/QEUH-A613BF/2020|20-10-13 10 +Switzerland/180039/2020|LR861669.1|20-07-01 3 +Switzerland/220022/2020|LR882244.1|20-07-27 5 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 1 +Japan/TKYE624705_2020/2020|LC593810.1|20-07 4 +England/QEUH-962E81/2020|20-08-10 2 +England/QEUH-96E605/2020|20-08-17 1 +England/QEUH-9F9265/2020|20-09-26 8 +England/QEUH-98EE43/2020|20-08-25 3 +England/NORW-E8709/2020|20-04-18 2 +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 3 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 1 +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 3 +England/QEUH-9600C9/2020|20-08-05 7 +England/QEUH-9B92F8/2020|20-09-07 6 +IND/GBRC455b/2020|MW600453.1|20-12-24 2 +IND/GBRC455a/2020|MW600436.1|20-12-24 1 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 2 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 1 +England/CAMB-76490/2020|20-03-30 3 +England/CAMB-7CBD1/2020|20-04-05 2 +Japan/TKYE630414_2020/2020|LC593818.1|20-08 2 +Japan/TKYE622411_2020/2020|LC593808.1|20-07 1 +England/MILK-A18C8F/2020|20-10-03 0 +England/ALDP-C3C1FD/2020|20-12-10 4 +Wales/PHWC-15E0B7/2020|20-05-13 3 +Wales/PHWC-30957/2020|20-04-08 1 +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 3 +LC573289.2|20-06 1 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 1 +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 4 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 2 +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 4 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 1 +USA/WI-UW-114/2020|MT706234.1|20-03-30 2 +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 8 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 1 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 1 +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 3 +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 6 +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 6 +England/CAMB-74D5B/2020|20-03-19 0 +England/LOND-D53CF/2020|20-04-15 1 +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 3 +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 6 +Wales/PHWC-1645BF/2020|20-05-06 4 +Wales/PHWC-33C88/2020|20-04-17 3 +USA/WA-S2724/2020|MT947562.1|20-07-04 0 +USA/WA-S2728/2020|MT947566.1|20-07-08 0 +Scotland/EDB5196/2020|20-05-18 4 +Scotland/CVR3185/2020|20-04-28 1 +England/BRIS-127363/2020|20-04-24 4 +England/BRIS-127A40/2020|20-04-17 1 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 2 +England/MILK-99DE32/2020|20-08-31 5 +England/CAMB-83A9E/2020|20-04-15 2 +England/EXET-136ED9/2020|20-04-22 1 +England/ALDP-955D39/2020|20-06-12 3 +Switzerland/300258/2020|LR898536.1|20-10-01 4 +England/SHEF-D1D3E/2020|20-04-22 4 +England/SHEF-CBE43/2020|20-04-26 2 +England/CAMC-949688/2020|20-07-27 2 +England/SHEF-C3AED/2020|20-07-30 2 +England/ALDP-90D6AE/2020|20-06-24 6 +POL/PL_P12/2020|MT511068.1|20-03-31 2 +England/MILK-ABBCCA/2020|20-10-21 3 +England/MILK-ACCF27/2020|20-10-21 2 +England/QEUH-99923A/2020|20-08-24 2 +England/MILK-825C54/2020|20-07-16 2 +England/MILK-9E2BDD/2020|20-09-20 2 +Northern_Ireland/NIRE-1088C3/2020|20-09-13 3 +England/MILK-99D755/2020|20-08-31 3 +England/MILK-99D764/2020|20-08-31 2 +England/ALDP-907D09/2020|20-06-22 1 +England/MILK-85E3E4/2020|20-07-18 1 +England/MILK-95862C/2020|20-06-11 1 +England/ALDP-94EF88/2020|20-06-16 4 +England/PHEC-219E0/2020|20-05-01 1 +England/LEED-2AA59E/2020|20-04-06 1 +Wales/PHWC-16578B/2020|20-06-07 5 +Wales/PHWC-166104/2020|20-05-15 7 +England/BRIS-125D67/2020|20-03-29 1 +England/BRIS-12C841/2020|20-05-12 3 +England/ALDP-94D8F7/2020|20-06-20 1 +England/NOTT-111BFB/2020|20-05-29 1 +England/ALDP-95A754/2020|20-06-13 1 +England/ALDP-95CEA8/2020|20-06-15 1 +England/MILK-8664D7/2020|20-07-17 1 +England/MILK-993300/2020|20-08-26 3 +England/CAMC-947392/2020|20-07-18 1 +England/MILK-977469/2020|20-07-24 4 +England/MILK-629D13/2020|20-07-05 6 +England/PORT-2F5752/2020|20-10-13 3 +England/QEUH-96A4C3/2020|20-08-13 2 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 2 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 2 +Wales/PHWC-162751/2020|20-05-27 2 +England/ALDP-497D12/2020|20-06-03 4 +England/SHEF-C13B7/2020|20-05-19 2 +England/SHEF-10B2E79/2020|20-05-16 2 +England/OXON-AEF9E/2020|20-04-07 2 +Wales/PHWC-162E7A/2020|20-05-19 1 +USA/WI-UW-982/2020|MT846668.1|20-07-21 2 +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 2 +USA/FL-QDX-228/2020|MT806770.1|20-04-18 3 +USA/VA-DCLS-0920/2020|MT929088.1|20-05 4 +England/ALDP-71D072/2020|20-07-01 1 +England/MILK-9573DB/2020|20-06-10 2 +England/ALDP-954C6A/2020|20-06-13 1 +England/ALDP-A524EB/2020|20-10-07 4 +England/ALDP-9D9104/2020|20-09-18 3 +England/CAMC-A40F67/2020|20-10-06 1 +Scotland/QEUH-A00DF0/2020|20-10-02 2 +England/ALDP-9CC5BD/2020|20-09-15 2 +England/QEUH-9B6EAC/2020|20-09-09 1 +England/NORT-2A4CAE/2020|20-09-17 1 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 2 +Northern_Ireland/NIRE-FB369/2020|20-08-31 1 +Wales/ALDP-6C3E72/2020|20-07-01 2 +England/ALDP-5A15D0/2020|20-06-14 2 +England/LEED-2AA4EC/2020|20-04-06 2 +England/LEED-2AA394/2020|20-03-31 1 +England/BRIS-1854318/2020|20-04-28 2 +England/BRIS-12E6FA/2020|20-04-20 2 +England/WSFT-25C13CB/2020|20-04-17 0 +England/PORT-2F5D9C/2020|20-06-05 1 +Wales/PHWC-16881C/2020|20-04-21 2 +Wales/PHWC-3612C/2020|20-04-28 4 +England/PHEC-20B81/2020|20-04-16 0 +England/MILK-992E97/2020|20-08-26 6 +England/QEUH-95DD9B/2020|20-08-07 2 +England/MILK-9570D4/2020|20-06-10 1 +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 2 +DV_IZSPB_236_S50|LR992121.1|20-08-29 0 +England/SHEF-C184F/2020|20-08-31 5 +England/ALDP-9D8FFC/2020|20-09-18 1 +England/NORT-28B1EA/2020|20-04-18 1 +England/NORT-28B28D/2020|20-04-18 1 +England/ALDP-5D52BE/2020|20-06-18 1 +England/ALDP-6FAF24/2020|20-06-29 2 +England/MILK-B01F25/2020|20-10-23 12 +Switzerland/210050/2020|LR882268.1|20-07-19 7 +England/ALDP-691499/2020|20-07-02 3 +England/ALDP-4A2BFC/2020|20-05-22 1 +England/ALDP-9B5BC4/2020|20-08-28 7 +England/ALDP-49F5B8/2020|20-05-22 1 +England/MILK-62FD59/2020|20-07-05 3 +England/ALDP-90DDC7/2020|20-06-26 3 +USA/IL-UW-1082/2020|MT929034.1|20-07-27 3 +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 5 +England/LIVE-9BC33/2020|20-04-21 0 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 2 +England/CAMB-1B087F/2020|20-05-04 4 +England/PHEC-2223F/2020|20-04-30 3 +England/ALDP-5A2A49/2020|20-06-14 1 +England/ALDP-5A2D6E/2020|20-06-14 3 +USA/WA-S1407/2020|MT821568.1|20-05-19 4 +USA/WA-S1434/2020|MT821707.1|20-05-21 1 +USA/WA-S2598/2020|MT831859.1|20-06-18 1 +USA/WA-S1840/2020|MT834024.1|20-05-27 3 +USA/WA-S1246/2020|MT821587.1|20-05-11 4 +USA/WA-S820/2020|MT641503.1|20-04-15 1 +England/CAMB-80B43/2020|20-04-11 2 +England/CAMB-7666D/2020|20-03-29 2 +USA/WA-S2573/2020|MT831840.1|20-06-17 0 +USA/WA-S2761/2020|MT947580.1|20-07-29 4 +England/ALDP-9BEB16/2020|20-09-09 1 +England/ALDP-A95376/2020|20-10-19 4 +England/QEUH-A9F5D0/2020|20-10-20 5 +England/QEUH-96AEF2/2020|20-08-15 2 +Scotland/CVR1557/2020|20-04-03 1 +Wales/PHWC-34610/2020|20-04-21 1 +Netherlands/NA_436/2020|LR883367.1|20-04-07 1 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 1 +England/CAMC-B36516/2020|20-11-05 1 +England/CAMC-B362D3/2020|20-11-05 1 +England/MILK-B3A284/2020|20-11-01 1 +England/CAMC-B365AD/2020|20-11-05 1 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 1 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 2 +AUS/VIC3114/2020|MT972550.1|20-07-06 2 +AUS/VIC9664/2020|MW156172.1|20-08-12 2 +AUS/VIC13094/2020|MW185501.1|20-07-31 1 +AUS/VIC9179/2020|MW153248.1|20-08-21 4 +AUS/VIC11646/2020|MW155572.1|20-07-22 1 +England/CAMB-82060/2020|20-04-21 3 +England/CAMB-82E1B/2020|20-04-14 1 +covid_hub_pl_ibch_0157|LR991987.1|20-05-19 3 +Poland/1/2020|LR899030.1|20-05-20 5 +England/CAMC-947259/2020|20-07-21 0 +England/MILK-9927C9/2020|20-08-27 6 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 0 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 1 +Scotland/EDB300/2020|20-03-29 1 +Scotland/CVR3194/2020|20-04-28 6 +England/CAMB-1AA438/2020|20-04-17 0 +England/CAMB-1AFB7A/2020|20-05-02 3 +Wales/PHWC-48212D/2020|20-10-20 2 +England/QEUH-9C80B0/2020|20-09-10 2 +England/MILK-9C4087/2020|20-09-09 1 +England/QEUH-96F349/2020|20-08-17 4 +England/BIRM-5FC3B/2020|20-05-28 5 +England/PHEC-13ADF/2020|20-03-13 0 +England/BIRM-6529A/2020|20-09-30 7 +USA/WA-S2831/2020|MW077478.1|20-09-08 13 +England/NORT-282796/2020|20-03-28 2 +England/NORT-2839AE/2020|20-04-01 2 +England/ALDP-951E49/2020|20-06-10 2 +England/ALDP-9557A4/2020|20-06-12 2 +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 3 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 1 +IND/GBRC203a/2020|MT669321.1|20-06-07 4 +USA/WA-S2809/2020|MW077484.1|20-08-31 10 +England/QEUH-96E025/2020|20-08-18 2 +Scotland/QEUH-94375E/2020|20-08-02 1 +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 6 +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 3 +England/CAMB-7C12A/2020|20-04-13 0 +England/CAMB-83348/2020|20-04-15 0 +Switzerland/220001/2020|LR882220.1|20-07-24 5 +England/BIRM-6BECD/2020|20-11-17 12 +England/CAMC-946506/2020|20-07-15 5 +AUS/VIC2173/2020|MT972184.1|20-06-24 3 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 1 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 1 +England/ALDP-94A63C/2020|20-06-11 5 +England/ALDP-52A636/2020|20-06-01 2 +England/SHEF-D1CE6/2020|20-04-28 4 +England/SHEF-C0F96/2020|20-04-15 4 +England/QEUH-B10460/2020|20-11-02 3 +Scotland/QEUH-96D5CD/2020|20-08-20 4 +ZW-6983|LR963462.1|20-05-01 1 +ZW-6978|LR963455.1|20-05-01 1 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 1 +England/MILK-1169960/2021|21-01-25 8 +England/ALDP-952A44/2020|20-06-21 2 +England/QEUH-9B4A22/2020|20-09-07 5 +Netherlands/NA_359/2020|LR883961.1|20-04-07 1 +Netherlands/NA_589/2020|LR883868.1|20-04-05 2 +England/CAMB-1AE7FF/2020|20-04-29 1 +England/CAMB-762D2/2020|20-03-28 4 +England/ALDP-BCA4B0/2020|20-11-23 0 +England/ALDP-119985B/2021|21-01-27 3 +USA/WA-S1222/2020|MT821613.1|20-05-08 1 +USA/WA-S1655/2020|MT834136.1|20-05-29 2 +Spain/R60/2020|LR884131.1|20-04-17 3 +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 4 +England/MILK-A06194/2020|20-10-01 2 +England/CAMC-B32AA2/2020|20-11-05 4 +USA/FHCRC-19442/2020|MW593677.1|20-07-30 4 +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 3 +England/CAMB-7772D/2020|20-03-31 3 +England/BRIS-12208F/2020|20-03-21 2 +Wales/PHWC-31CB7/2020|20-04-14 3 +Wales/PHWC-26D2B/2020|20-03-30 2 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 1 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 1 +Scotland/GCVR-171160/2020|20-03-26 3 +England/BRIS-130E2A/2020|20-03-24 2 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 1 +NED/NB02_13KS/2020|MT457397.1|20-04-29 5 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 1 +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 2 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 1 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 2 +England/BRIS-1258A2/2020|20-03-29 3 +England/SHEF-BFEBB/2020|20-03-24 2 +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 3 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 1 +England/ALDP-52C0FA/2020|20-06-01 3 +England/LIVE-9D7D6/2020|20-04-15 1 +USA/WI-UW-298/2020|MT706406.1|20-04-13 2 +USA/WI-UW-314/2020|MT706422.1|20-04-16 1 +USA/WI-UW-325/2020|MT706432.1|20-04-24 2 +USA/WI-UW-290/2020|MT706398.1|20-04-08 3 +Scotland/CVR3488/2020|20-05-12 4 +Scotland/CVR780/2020|20-03-27 1 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 1 +Japan/TKYE64688_2020/2020|LC581375.1|20-03 3 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 1 +USA/DC-HP00063/2020|MT646075.1|20-03-13 1 +MYS/188407/2020|MT372480.1|20-03-18 1 +AUS/VIC961/2020|MT451653.1|20-03-27 3 +Scotland/EDB5629/2020|20-03-24 1 +Scotland/EDB5040/2020|20-04-02 1 +Scotland/EDB1824/2020|20-04-16 5 +Spain/H12_46/2020|LR884009.1|20-04-08 2 +Spain/R11/2020|LR884126.1|20-03-06 1 +Spain/LP19_4952/2020|LR884066.1|20-03-07 0 +HKG/HKU-904a/2020|MT365032.1|20-01-30 2 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 2 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 4 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 0 +Spain/R10_33/2020|LR884127.1|20-03-02 1 +Scotland/CVR3062/2020|20-04-24 4 +Scotland/CVR2435/2020|20-04-14 1 +England/OXON-B0922/2020|20-03-28 4 +AUS/VIC995/2020|MT451680.1|20-03-31 1 +USA/WA-S4100/2021|MW555971.1|21-01-18 3 +USA/WA-S4074/2021|MW555949.1|21-01-19 6 +England/ALDP-CB55B4/2020|20-12-20 3 +England/CAMC-CF4B5D/2020|20-12-21 8 +USA/WI-UW-06/2020|MT772088.1|20-03-21 2 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 1 +GHA/34927_S20/2020|MT890226.1|20-05-23 2 +GHA/35563_S37/2020|MT890230.1|20-05-24 5 +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 4 +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 4 +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 6 +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 3 +England/CAMC-C91F38/2020|20-12-11 15 +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 3 +USA/COVID20-0008/2020|MT764174.1|20-03-10 1 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 0 +England/LIVE-9E66F/2020|20-04-10 2 +Scotland/CVR705/2020|20-03-26 2 +England/PHEC-1A601/2020|20-03-04 1 +England/PHEC-2275E/2020|20-06-22 9 +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 2 +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 2 +AUS/VIC1255/2020|MT451830.1|20-04-11 3 +AUS/VIC1878/2020|MT745600.1|20-03-29 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_22_total_parsimony_tree.txt Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1 @@ +Total Tree Parsimony 5362
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_23_equally_parsimoniou.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1097 @@ +sample epps +England/BRIS-1853249/2020|20-04-02 4 +Wales/PHWC-25B04/2020|20-03-24 4 +NPL/61-TW/2020|MT072688.1|20-01-13 1 +Wales/LIVE-A6831/2020|20-03-16 4 +Scotland/EDB1317/2020|20-04-09 3 +Scotland/EDB354/2020|20-03-30 4 +England/SHEF-BFF8B/2020|20-03-25 1 +England/LCST-24D7202/2020|20-06-22 1 +England/SHEF-BFFC7/2020|20-03-25 4 +England/PHEC-1E01E/2020|20-04-03 4 +DP0476/2020|LC571003.1|20-02-16 1 +DP0191/2020|LC570980.1|20-02-15 1 +England/LIVE-A5D06/2020|20-03-17 4 +England/LIVE-A065B/2020|20-05-27 4 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 4 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 4 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 4 +NED/NB02_13KS/2020|MT457397.1|20-04-29 4 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 1 +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 4 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 1 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 1 +England/BRIS-1258A2/2020|20-03-29 1 +England/SHEF-BFEBB/2020|20-03-24 1 +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 1 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 1 +England/LIVE-9E66F/2020|20-04-10 4 +Scotland/CVR705/2020|20-03-26 4 +England/SHEF-BFF21/2020|20-03-25 1 +England/LIVE-A4C46/2020|20-03-12 1 +Switzerland/100159/2020|LR884273.1|20-03-16 1 +England/EXET-135818/2020|20-04-11 6 +France/40002VJ/2020|MT470179.1|20-03 7 +Wales/PHWC-310CA/2020|20-04-11 2 +Scotland/GCVR-171160/2020|20-03-26 4 +England/BRIS-130E2A/2020|20-03-24 4 +USA/WI-UW-298/2020|MT706406.1|20-04-13 1 +USA/WI-UW-314/2020|MT706422.1|20-04-16 1 +USA/WI-UW-325/2020|MT706432.1|20-04-24 2 +USA/WI-UW-290/2020|MT706398.1|20-04-08 1 +Scotland/CVR3488/2020|20-05-12 1 +Scotland/CVR780/2020|20-03-27 1 +Scotland/EDB5629/2020|20-03-24 1 +HKG/HKU-904a/2020|MT365032.1|20-01-30 2 +Scotland/EDB5040/2020|20-04-02 1 +England/LOND-126031F/2020|20-03-15 1 +Scotland/EDB046/2020|20-03-15 5 +England/BRIS-12EEB6/2020|20-04-22 1 +Scotland/EDB199/2020|20-03-26 1 +England/CAMB-74A09/2020|20-03-18 1 +England/ALDP-9EE3AC/2020|20-05-06 1 +USA/WA3-UW1/2020|MT163716.1|20-02-27 1 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 1 +England/ALDP-52C0FA/2020|20-06-01 1 +England/LIVE-9D7D6/2020|20-04-15 1 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 1 +Japan/TKYE64688_2020/2020|LC581375.1|20-03 1 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 1 +USA/DC-HP00063/2020|MT646075.1|20-03-13 1 +England/PHEC-1A601/2020|20-03-04 1 +England/PHEC-2275E/2020|20-06-22 1 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 1 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 1 +Wales/PHWC-285F4/2020|20-04-01 2 +England/BRIS-130965/2020|20-04-13 2 +Scotland/CVR44/2020|20-03-13 1 +Scotland/CVR839/2020|20-03-27 1 +Scotland/GCVR-170107/2020|20-03-23 1 +Scotland/CVR207/2020|20-03-18 1 +England/CAMB-8042A/2020|20-04-10 1 +England/CAMB-737B8/2020|20-03-30 6 +USA/WA-S885/2020|MT642386.1|20-04-22 1 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 1 +England/BRIS-1265AA/2020|20-04-10 1 +AUS/NT38/2020|MT641726.1|20 1 +England/BRIS-123965/2020|20-04-07 1 +IND/Isolate_9088/2020|MW555597.1|20-06-30 1 +England/BRIS-125347/2020|20-03-27 1 +IND/763/2020|MT577009.1|20 1 +England/CAMB-7772D/2020|20-03-31 4 +England/BRIS-12208F/2020|20-03-21 4 +Scotland/EDB1824/2020|20-04-16 1 +Spain/H12_46/2020|LR884009.1|20-04-08 2 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 2 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 2 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 1 +Spain/R10_33/2020|LR884127.1|20-03-02 1 +AUS/VIC1255/2020|MT451830.1|20-04-11 1 +AUS/VIC1878/2020|MT745600.1|20-03-29 1 +England/NORT-284A9B/2020|20-03-25 1 +Scotland/CVR10/2020|20-03-10 1 +England/CAMB-75BD8/2020|20-03-29 1 +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 1 +USA/WI-UW-26/2020|MT706147.1|20-03-24 1 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 1 +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 1 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 1 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 1 +USA/WI-UW-558/2020|MT750137.1|20-06-25 1 +AUS/VIC2260/2020|MT972173.1|20-06-22 1 +England/EXET-1358BE/2020|20-04-15 1 +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 2 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 3 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 2 +Switzerland/100198/2020|LR884312.1|20-03-17 1 +England/NOTT-10E1B3/2020|20-03-19 5 +USA/WI-UW-37/2020|MT706158.1|20-03-22 2 +Scotland/CVR2927/2020|20-04-22 1 +Scotland/GCVR-173C30/2020|20-04-07 1 +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 2 +Switzerland/140091/2020|LR824563.1|20-04-18 1 +England/BRIS-12755E/2020|20-04-22 2 +England/BRIS-12468B/2020|20-04-09 2 +England/NORW-E9DF7/2020|20-05-02 1 +Scotland/EDB156/2020|20-03-23 1 +Wales/PHWC-27B20/2020|20-03-30 1 +Wales/PHWC-2624A/2020|20-03-27 1 +Wales/PHWC-2BF8A/2020|20-04-02 1 +Wales/PHWC-29E43/2020|20-04-04 1 +England/LOND-D3534/2020|20-03-27 1 +England/PHEC-20C24/2020|20-04-21 1 +England/CAMB-7D2EA/2020|20-04-06 1 +England/LIVE-A63E5/2020|20-03-18 1 +Wales/PHWC-260C8/2020|20-03-26 1 +England/BRIS-12F969/2020|20-03-30 1 +England/PHEC-2083F/2020|20-04-13 2 +Wales/PHWC-16C6F0/2020|20-06-09 1 +Wales/PHWC-27461/2020|20-03-31 1 +Wales/PHWC-29F13/2020|20-04-01 1 +IND/GBRC99/2020|MT509504.1|20-05-06 1 +IND/GBRC31/2020|MT467247.1|20-04-29 1 +AUS/VIC1239/2020|MT451821.1|20-04-02 1 +AUS/VIC1282/2020|MW153048.1|20-04-08 1 +IND/GBRC128/2020|MT539172.1|20-05-02 1 +IND/GBRC123/2020|MT539176.1|20-05-02 1 +POL/PL_MCB_32/2020|MW273814.1|20-04-22 2 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 1 +England/CAMB-7BED9/2020|20-04-04 1 +Netherlands/NA_302/2020|LR878041.1|20-04-01 1 +USA/WI-UW-1385/2020|MW035549.1|20-09-06 1 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 1 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 1 +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 1 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 2 +GRC/202_32984/2020|MT459870.1|20-03-12 1 +USA/FHCRC-19442/2020|MW593677.1|20-07-30 1 +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 1 +Wales/PHWC-31CB7/2020|20-04-14 1 +Wales/PHWC-26D2B/2020|20-03-30 1 +MYS/188407/2020|MT372480.1|20-03-18 1 +AUS/VIC961/2020|MT451653.1|20-03-27 4 +Spain/R11/2020|LR884126.1|20-03-06 1 +Spain/LP19_4952/2020|LR884066.1|20-03-07 1 +USA/COVID20-0008/2020|MT764174.1|20-03-10 1 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 1 +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 1 +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 1 +England/CAMB-76515/2020|20-03-29 1 +England/CAMB-1AE294/2020|20-04-27 1 +England/LEED-2A8D10/2020|20-03-31 1 +England/CAMB-1AC6F4/2020|20-04-21 2 +Scotland/EDB2049/2020|20-04-18 1 +England/CAMB-7EBDF/2020|20-04-07 1 +Scotland/CVR3417/2020|20-05-07 2 +Scotland/CVR1519/2020|20-04-03 1 +England/MILK-93B73B/2020|20-06-21 2 +England/MILK-9589F6/2020|20-06-15 2 +England/BRIS-128441/2020|20-04-16 1 +England/CAMB-7C39D/2020|20-04-13 2 +England/ALDP-50085E/2020|20-06-27 2 +England/PHEC-127E8/2020|20-03-28 1 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 1 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 1 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 1 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 3 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 1 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 1 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 1 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 1 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 1 +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 3 +USA/WI-UW-1105/2020|MT929055.1|20-07-24 1 +USA/RML-22/2020|MW221270.1|20-08-30 2 +Scotland/CVR2931/2020|20-04-22 1 +Scotland/GCVR-172150/2020|20-03-30 1 +England/BRIS-124885/2020|20-03-24 1 +England/BRIS-122C4F/2020|20-04-02 1 +USA/WI-UW-1046/2020|MT928999.1|20-07-29 1 +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 4 +Scotland/CVR3054/2020|20-04-24 3 +England/MILK-95698F/2020|20-06-06 1 +England/CAMB-79ECC/2020|20-04-01 1 +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 1 +USA/AK-PHL414/2020|MT946886.1|20-06-03 1 +USA/AK-PHL689/2020|MW173160.1|20-06-29 1 +England/MILK-974596/2020|20-08-17 1 +Switzerland/310363/2020|LR898676.1|20-10-07 1 +England/MILK-978626/2020|20-07-30 2 +England/MILK-9A565D/2020|20-09-03 2 +USA/NM-QDX-264/2020|MT806796.1|20-04-30 2 +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 3 +Scotland/EDB1198/2020|20-04-08 2 +England/PHEC-20A84/2020|20-04-20 2 +Scotland/EDB6324/2020|20-06-01 2 +Scotland/EDB4579/2020|20-05-06 2 +Wales/PHWC-360E3/2020|20-04-26 2 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 1 +Netherlands/NA_289/2020|LR878031.1|20-03-31 2 +France/10065EE/2020|MT470176.1|20-03 2 +France/10036BG/2020|MT470106.1|20-03 1 +IHUCOVID-0033|LR794417.1|? 1 +England/PORT-2D0D4C/2020|20-04-27 2 +Switzerland/100210/2020|LR884314.1|20-03-18 1 +POL/PL_MCB_72/2020|MW273854.1|20-05-10 2 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 1 +England/QEUH-9CE80D/2020|20-09-17 1 +England/QEUH-990752/2020|20-08-29 1 +AUS/VIC38/2020|MT450953.1|20-03-11 1 +IHUCOVID-0133|LR794459.1|? 1 +USA/MN67-MDH67/2020|MT911566.1|20-03-14 1 +Netherlands/NA_292/2020|LR878032.1|20-04-01 1 +Switzerland/101166/2020|LR824397.1|20-03-31 1 +Switzerland/100154/2020|LR824311.1|20-03-16 1 +PER/covper020/2020|MW030251.1|20-07-03 1 +PER/covper091/2020|MW030227.1|20-03-17 1 +England/ALDP-49A5AE/2020|20-06-13 2 +England/ALDP-4A2A77/2020|20-05-22 1 +Wales/PHWC-16930B/2020|20-04-01 1 +Wales/PHWC-34285/2020|20-04-14 1 +USA/UT-08320/2020|MW206019.1|20-05-15 1 +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 1 +England/QEUH-B2DD0B/2020|20-11-03 2 +England/MILK-A7B0BB/2020|20-10-14 1 +AUS/VIC989/2020|MT451674.1|20-03-31 1 +AUS/VIC1056/2020|MT451723.1|20-04-03 1 +England/BRIS-12B2BD/2020|20-05-02 1 +England/BRIS-128DCE/2020|20-04-14 1 +Scotland/GCVR-1725BE/2020|20-04-04 1 +Scotland/CVR30/2020|20-03-13 1 +England/NORT-289814/2020|20-04-01 1 +England/ALDP-9ED57A/2020|20-05-08 1 +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 1 +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 1 +Scotland/CVR129/2020|20-03-13 1 +Scotland/CVR52/2020|20-03-14 1 +GRC/208_33922/2020|MT459876.1|20-03-14 1 +England/CAMC-947875/2020|20-07-13 1 +GHA/34927_S20/2020|MT890226.1|20-05-23 1 +GHA/35563_S37/2020|MT890230.1|20-05-24 2 +England/CAMC-C91F38/2020|20-12-11 1 +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 1 +Scotland/EDB2100/2020|20-04-19 1 +England/CAMB-1AC7D3/2020|20-04-22 1 +Scotland/CVR2381/2020|20-04-13 1 +Scotland/CVR2197/2020|20-04-11 1 +England/NORW-E8C37/2020|20-04-13 2 +England/NORW-E75A6/2020|20-05-04 1 +Wales/PHWC-3122E/2020|20-04-10 1 +Wales/PHWC-1645EC/2020|20-05-10 1 +England/ALDP-9ED9F6/2020|20-05-05 1 +England/ALDP-944BD9/2020|20-06-07 1 +England/LEED-2A91D7/2020|20-04-06 2 +England/LEED-2A87C7/2020|20-04-03 1 +USA/WA-UW-4105/2020|MT358746.1|20-03-31 1 +USA/WA-UW-2220/2020|MT345839.1|20-03-23 1 +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 1 +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 1 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 1 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 1 +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 1 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 1 +Wales/PHWC-1658A6/2020|20-05-19 1 +Wales/PHWC-2E0A2/2020|20-04-10 1 +Scotland/EDB3137/2020|20-04-06 1 +Scotland/EDB2810/2020|20-03-30 1 +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 1 +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 1 +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 1 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 1 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 5 +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 1 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 1 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 2 +USA/WI-UW-1092/2020|MT929042.1|20-07-27 1 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 1 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 1 +USA/WA-S1266/2020|MT821676.1|20-05-13 2 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 1 +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 1 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 1 +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 1 +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 1 +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 1 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 1 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 1 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 1 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 1 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 1 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 1 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 1 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 1 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 1 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 1 +USA/DC-HP00089/2020|MT509482.1|20-03-31 1 +USA/UT-03817/2020|MT873871.1|20-04-03 1 +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 1 +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 1 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 1 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 1 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 1 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 1 +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 2 +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 1 +England/OXON-B15A5/2020|20-04-29 1 +England/BRIS-129D72/2020|20-04-15 1 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 1 +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 1 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 1 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 1 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 1 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 2 +England/BRIS-12BF3E/2020|20-05-09 2 +England/BRIS-12DF1E/2020|20-06-04 1 +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 1 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 1 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 1 +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 1 +England/PHEC-15A73/2020|20-03-29 1 +USA/CA-QDX-796/2020|MW064788.1|20-03-23 1 +B90|LR898037.1|? 1 +O9|LR963074.1|? 1 +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 1 +USA/WI-UW-738/2020|MT772509.1|20-06-30 1 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 1 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 1 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 1 +England/CAMC-946515/2020|20-07-15 1 +USA/WI-UW-249/2020|MT706376.1|20-03-16 2 +USA/WI-UW-84/2020|MT706205.1|20-03-24 2 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 3 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 1 +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 2 +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 2 +USA/UT-04888/2020|MW084559.1|20-05-26 3 +USA/UT-04282/2020|MW084509.1|20-05-14 3 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 1 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 1 +Wales/PHWC-15DFD9/2020|20-05-14 1 +Wales/PHWC-2AF12/2020|20-04-06 2 +IHUCOVID-0441|LR794655.1|? 1 +IHUCOVID-0428|LR794641.1|? 1 +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? 1 +Switzerland/100363/2020|LR884411.1|20-03-20 1 +USA/UT-01683/2020|MT536956.1|20-04-13 1 +USA/UT-03892/2020|MT711875.1|20-04-13 1 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 3 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 6 +England/NORW-E7EBA/2020|20-05-06 1 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 1 +USA/WI-UW-413/2020|MT772562.1|20-04-07 1 +USA/WI-UW-288/2020|MT706396.1|20-04-08 1 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 1 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 4 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 1 +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 1 +BHR/740704818/2021|MW661071.1|21-01-26 1 +England/QEUH-E93C6A/2021|21-01-04 1 +Scotland/EDB3341/2020|20-04-08 1 +Scotland/EDB6880/2020|20-04-30 1 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 2 +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 1 +England/ALDP-B252AA/2020|20-11-04 2 +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 2 +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 3 +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 2 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 2 +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 2 +England/LOND-D5444/2020|20-04-15 2 +Scotland/CVR3238/2020|20-04-26 3 +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 2 +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 2 +Scotland/EDB3662/2020|20-04-28 2 +England/ALDP-6FB8FB/2020|20-06-29 2 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 2 +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 2 +England/LIVE-A00F3/2020|20-06-04 2 +England/QEUH-544733/2020|20-05-14 2 +England/MILK-654007/2020|20-07-04 2 +England/OXON-B1781/2020|20-05-04 2 +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 1 +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 2 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 1 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 1 +England/MILK-977645/2020|20-07-24 1 +England/CAMC-B325A1/2020|20-11-05 3 +England/PHEC-224A2/2020|20-06-08 1 +England/NORW-ECD21/2020|20-05-29 2 +England/NORW-E755B/2020|20-05-04 1 +IND/nimh-19510/2020|MW181843.1|20-05-16 1 +IND/GBRC174b/2020|MT607610.1|20-06-05 1 +Scotland/CVR3629/2020|20-05-24 1 +Scotland/QEUH-5456F9/2020|20-05-13 1 +Switzerland/240009/2020|LR880588.1|20-08-07 1 +Switzerland/240084/2020|LR880634.1|20-08-12 1 +England/LIVE-A65EF/2020|20-03-19 1 +Wales/PHWC-2B7CE/2020|20-04-12 2 +England/ALDP-94D8D9/2020|20-06-20 1 +England/ALDP-9442D4/2020|20-06-07 1 +England/PORT-2D3B4F/2020|20-04-18 1 +England/EXET-136EE8/2020|20-04-20 1 +England/PHEC-215FB/2020|20-04-29 7 +England/PHEC-1B7C1/2020|20-04-08 1 +Switzerland/120182/2020|LR860799.1|20-04-27 6 +England/ALDP-9545BA/2020|20-06-17 2 +England/BRIS-12F78D/2020|20-03-10 7 +Switzerland/100802/2020|LR824314.1|20-03-25 5 +England/NORT-282972/2020|20-03-27 1 +England/CAMB-80554/2020|20-04-09 1 +England/PHEC-20E4C/2020|20-04-16 7 +England/NORT-283B7B/2020|20-04-02 5 +England/ALDP-95665B/2020|20-06-08 7 +England/CAMB-7767B/2020|20-03-31 1 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 7 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 7 +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 7 +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 7 +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 7 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 1 +England/SHEF-C9FBB/2020|20-04-11 7 +England/LOND-D6531/2020|20-04-22 1 +England/MILK-99D597/2020|20-08-30 1 +Scotland/EDB6515/2020|20-06-15 1 +FRA/Env-Di/2020|MT709105.1|20-05-14 7 +AUS/VIC1786/2020|MT612326.1|20-05-27 5 +England/CAMB-7620F/2020|20-03-30 6 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 5 +England/PHEC-1DF03/2020|20-04-08 1 +England/CAMB-1AB21F/2020|20-04-18 1 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 7 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 1 +England/PHEC-16F19/2020|20-03-31 1 +England/GSTT-265D4DF/2020|20-03-19 1 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 8 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 7 +England/BRIS-124C89/2020|20-03-26 4 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 7 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 1 +England/LOND-D53CF/2020|20-04-15 1 +Scotland/EDB5196/2020|20-05-18 5 +Scotland/CVR3185/2020|20-04-28 1 +England/CAMB-83A9E/2020|20-04-15 7 +England/EXET-136ED9/2020|20-04-22 7 +England/ALDP-955D39/2020|20-06-12 1 +Switzerland/300258/2020|LR898536.1|20-10-01 7 +England/SHEF-D1D3E/2020|20-04-22 2 +England/SHEF-CBE43/2020|20-04-26 1 +England/ALDP-90D6AE/2020|20-06-24 1 +POL/PL_P12/2020|MT511068.1|20-03-31 1 +England/MILK-9E2BDD/2020|20-09-20 7 +Northern_Ireland/NIRE-1088C3/2020|20-09-13 7 +England/PHEC-219E0/2020|20-05-01 7 +England/LEED-2AA59E/2020|20-04-06 5 +England/MILK-8664D7/2020|20-07-17 5 +England/MILK-629D13/2020|20-07-05 1 +England/SHEF-C13B7/2020|20-05-19 1 +England/SHEF-10B2E79/2020|20-05-16 7 +England/OXON-AEF9E/2020|20-04-07 7 +Wales/PHWC-162E7A/2020|20-05-19 1 +England/ALDP-954C6A/2020|20-06-13 7 +England/ALDP-A524EB/2020|20-10-07 1 +Wales/ALDP-6C3E72/2020|20-07-01 6 +England/ALDP-5A15D0/2020|20-06-14 7 +England/PHEC-20B81/2020|20-04-16 1 +England/MILK-992E97/2020|20-08-26 1 +England/QEUH-95DD9B/2020|20-08-07 7 +England/MILK-9570D4/2020|20-06-10 7 +England/LIVE-9BC33/2020|20-04-21 1 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 7 +England/CAMB-1B087F/2020|20-05-04 7 +England/PHEC-2223F/2020|20-04-30 7 +England/ALDP-5A2A49/2020|20-06-14 7 +England/ALDP-5A2D6E/2020|20-06-14 7 +USA/WA-S1407/2020|MT821568.1|20-05-19 8 +USA/WA-S1434/2020|MT821707.1|20-05-21 1 +Scotland/CVR1557/2020|20-04-03 7 +Wales/PHWC-34610/2020|20-04-21 1 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 7 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 7 +England/CAMB-82060/2020|20-04-21 1 +England/CAMB-82E1B/2020|20-04-14 1 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 1 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 5 +Scotland/EDB300/2020|20-03-29 7 +Scotland/CVR3194/2020|20-04-28 5 +England/BIRM-6529A/2020|20-09-30 1 +USA/WA-S2831/2020|MW077478.1|20-09-08 8 +IND/GBRC203a/2020|MT669321.1|20-06-07 1 +USA/WA-S2809/2020|MW077484.1|20-08-31 1 +England/CAMB-7C12A/2020|20-04-13 1 +England/CAMB-83348/2020|20-04-15 1 +England/CAMC-946506/2020|20-07-15 1 +AUS/VIC2173/2020|MT972184.1|20-06-24 7 +England/SHEF-D1CE6/2020|20-04-28 5 +England/SHEF-C0F96/2020|20-04-15 7 +Netherlands/NA_359/2020|LR883961.1|20-04-07 1 +Netherlands/NA_589/2020|LR883868.1|20-04-05 7 +England/ALDP-BCA4B0/2020|20-11-23 1 +England/ALDP-119985B/2021|21-01-27 1 +USA/WI-UW-06/2020|MT772088.1|20-03-21 1 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 2 +USA/WA-S3017/2020|MW474188.1|20-08-15 1 +USA/WA-S2852/2020|MW079820.1|20-09-01 1 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 3 +USA/WI-UW-269/2020|MT429191.1|20-04-06 2 +England/CAMB-7A7DF/2020|20-04-02 1 +Netherlands/NA_18/2020|LR878352.1|20-03-09 3 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 1 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 1 +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 1 +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 1 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 1 +USA/UT-02231/2020|MT444626.1|20-04-15 1 +USA/WA-S2850/2020|MW079819.1|20-09-01 1 +USA/WA-S2746/2020|MT947577.1|20-07-19 1 +USA/WI-UW-879/2020|MT846567.1|20-07-14 2 +USA/UT-05590/2020|MW084605.1|20-06-01 1 +Netherlands/NA_588/2020|LR883860.1|20 1 +Netherlands/NA_583/2020|LR883819.1|20 2 +USA/WA-S2992/2020|MW474166.1|20-08-12 2 +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 2 +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 2 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 1 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 2 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 1 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 1 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 1 +USA/WI-UW-1126/2020|MT929103.1|20-08-13 1 +USA/WI-UW-1071/2020|MT929023.1|20-07-29 1 +USA/VA-DCLS-0481/2020|MT951936.1|20-05 2 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 1 +KOR/YS006/2020|MW345824.1|20-06-04 1 +KOR/YS008/2020|MW345825.1|20-06-07 1 +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 1 +USA/WA-S1037/2020|MT642186.1|20-05-03 1 +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 1 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 1 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 1 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 1 +USA/VA-DCLS-1006/2020|MT952676.1|20-06 1 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 1 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 1 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 1 +USA/UT-00495/2020|MT444543.1|20-04-02 1 +USA/UT-00353/2020|MT444564.1|20-03-27 1 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 1 +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 1 +England/CAMB-7771E/2020|20-03-30 1 +England/CAMB-7DC91/2020|20-04-05 1 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 1 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 1 +Scotland/EDB3598/2020|20-04-27 1 +Scotland/EDB2451/2020|20-04-23 1 +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 1 +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 1 +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 2 +USA/IL-UW-385/2020|MT772536.1|20-05-23 2 +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 1 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 1 +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 1 +USA/UT-03041/2020|MW053962.1|20-05-01 1 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 1 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 1 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 2 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 1 +USA/WA-S2725/2020|MT947550.1|20-07-07 1 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 1 +England/BRIS-128CA3/2020|20-04-14 1 +England/BRIS-12B1CF/2020|20-05-15 1 +USA/WI-UW-491/2020|MT750074.1|20-06-11 1 +USA/WI-UW-522/2020|MT750102.1|20-06-24 1 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 1 +AUS/VIC1161/2020|MT451779.1|20-04-09 1 +USA/VA-DCLS-1282/2020|MW067700.1|20-08 1 +USA/COVID20-1144/2020|MW067817.1|20-07-10 1 +Wales/PHWC-1662B6/2020|20-06-13 1 +Wales/PHWC-26B12/2020|20-03-29 1 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 1 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 1 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 1 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 1 +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 1 +USA/VA-DCLS-1517/2020|MW197475.1|20-07 1 +USA/WI-UW-1268/2020|MW035438.1|20-08-25 1 +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 1 +Scotland/EDB6146/2020|20-05-14 1 +Scotland/EDB6052/2020|20-05-08 1 +England/CAMB-7FBCF/2020|20-04-16 1 +England/CAMB-784BC/2020|20-04-06 1 +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 1 +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 1 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 1 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 2 +BHR/600023154_S29/2020|MW237743.1|20-10-14 2 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 3 +England/PHEC-1C872/2020|20-04-16 1 +England/BRIS-130015/2020|20-04-11 1 +England/CAMC-B533A0/2020|20-11-08 1 +England/MILK-9781E9/2020|20-07-29 1 +321398|LR962930.1|20-10-13 1 +England/QEUH-B8053B/2020|20-11-14 1 +England/CAMC-A3E658/2020|20-10-05 2 +England/MILK-A47DDF/2020|20-10-05 11 +IND/GBRC-366a/2020|MT951170.1|20-06-18 1 +IND/GBRC-392b/2020|MT954593.1|20-07-06 2 +SAU/596/2020|MT755893.1|20-02-18 1 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 1 +England/ALDP-EEACDD/2021|21-01-03 5 +England/LIVE-DDCD09/2021|21-01-02 1 +USA/VA-DCLS-0229/2020|MT558657.1|20-04 1 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 1 +USA/WA-S1281/2020|MT821642.1|20-05-12 1 +USA/WA-S2367/2020|MT831837.1|20-06-11 3 +USA/VA-DCLS-0804/2020|MT925987.1|20-07 3 +USA/VA-DCLS-1454/2020|MW067779.1|20-08 5 +England/MILK-99DB3B/2020|20-08-31 1 +England/ALDP-5D3DEC/2020|20-06-19 1 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 1 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 1 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 2 +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 2 +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 2 +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 2 +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 2 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 2 +Switzerland/220021/2020|LR882232.1|20-07-27 1 +England/QEUH-96E08F/2020|20-08-18 2 +England/CAMC-B34141/2020|20-11-05 2 +England/MILK-A795AF/2020|20-10-14 2 +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 1 +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 1 +England/CAMC-94C02D/2020|20-07-15 1 +England/MILK-95DBDD/2020|20-06-20 1 +Scotland/CVR2213/2020|20-04-11 1 +Scotland/CVR1909/2020|20-04-06 1 +England/PHEC-1555C0/2021|21-01-16 1 +England/MILK-E6578E/2020|20-12-30 1 +England/CAMC-106052A/2021|21-01-16 1 +England/LOND-12F6633/2020|20-12-15 1 +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 1 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 1 +USA/WA-S2264/2020|MT831437.1|20-06-09 1 +USA/WA-S1922/2020|MT831459.1|20-06-03 2 +England/CAMB-83FF9/2020|20-04-25 1 +England/CAMB-75895/2020|20-03-18 1 +England/LOND-D6EBE/2020|20-04-03 4 +England/SHEF-C88A2/2020|20-04-21 1 +USA/WA-S860/2020|MT642111.1|20-04-24 1 +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 1 +England/QEUH-A0AFB4/2020|20-10-01 1 +England/ALDP-C48747/2020|20-12-12 1 +Switzerland/230051/2020|LR882355.1|20-08-04 7 +Wales/MILK-9C729D/2020|20-09-12 1 +England/BRIS-12A70A/2020|20-05-01 1 +England/CAMB-77F61/2020|20-04-01 1 +PHL/UPMNIH_C1/2020|MW243995.1|20-07 2 +PHL/COVID-6009/2020|MT919790.1|20-07-18 1 +England/CAMC-94328A/2020|20-07-25 1 +England/CAMC-9424A3/2020|20-07-21 1 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 1 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 1 +USA/VA-DCLS-1485/2020|MW205988.1|20-07 1 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 1 +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 1 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 1 +England/QEUH-9AE4E1/2020|20-09-01 2 +England/OXON-AEBC7/2020|20-04-12 1 +England/LOND-D4C6B/2020|20-04-15 2 +Wales/PHWC-164485/2020|20-05-02 1 +England/ALDP-5C701F/2020|20-06-19 7 +England/ALDP-51F142/2020|20-06-02 1 +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 2 +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 8 +Northern_Ireland/NIRE-10677D/2020|20-05-14 1 +Northern_Ireland/NIRE-106740/2020|20-05-14 1 +England/MILK-9705F4/2020|20-08-18 1 +England/ALDP-9B6440/2020|20-08-28 1 +England/NORW-EE34B/2020|20-03-24 1 +England/NORW-E8693/2020|20-04-16 1 +Switzerland/250070/2020|LR881870.1|20-08-18 7 +England/QEUH-9B5344/2020|20-09-02 5 +England/ALDP-6839B9/2020|20-07-02 7 +England/ALDP-6BAB59/2020|20-06-29 1 +Scotland/QEUH-96C6AD/2020|20-08-07 3 +Switzerland/270108/2020|LR882077.1|20-09-03 7 +England/ALDP-68EFBC/2020|20-07-02 7 +England/ALDP-91F278/2020|20-06-23 1 +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 1 +USA/WI-UW-1202/2020|MW035373.1|20-08-06 7 +England/LIVE-A2765/2020|20-05-20 1 +England/ALDP-658C87/2020|20-07-03 7 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 7 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 1 +England/NORT-283BE4/2020|20-04-03 7 +England/CAMB-81070/2020|20-04-20 1 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 1 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 1 +England/BRIS-123EDF/2020|20-04-08 1 +England/BRIS-123F09/2020|20-04-08 1 +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 1 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 1 +Scotland/QEUH-7B078B/2020|20-07-19 2 +England/MILK-993EA5/2020|20-08-22 7 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 7 +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 5 +England/QEUH-9600C9/2020|20-08-05 1 +England/QEUH-9B92F8/2020|20-09-07 7 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 7 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 7 +England/CAMB-76490/2020|20-03-30 1 +England/CAMB-7CBD1/2020|20-04-05 1 +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 7 +LC573289.2|20-06 1 +USA/WI-UW-114/2020|MT706234.1|20-03-30 1 +England/CAMB-74D5B/2020|20-03-19 1 +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 7 +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 2 +Wales/PHWC-1645BF/2020|20-05-06 7 +Wales/PHWC-33C88/2020|20-04-17 5 +USA/WA-S2724/2020|MT947562.1|20-07-04 1 +USA/WA-S2728/2020|MT947566.1|20-07-08 1 +England/BRIS-127363/2020|20-04-24 1 +England/BRIS-127A40/2020|20-04-17 1 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 7 +England/MILK-99DE32/2020|20-08-31 7 +England/QEUH-99923A/2020|20-08-24 1 +England/MILK-825C54/2020|20-07-16 1 +England/BRIS-125D67/2020|20-03-29 1 +England/BRIS-12C841/2020|20-05-12 7 +England/ALDP-95A754/2020|20-06-13 1 +England/ALDP-95CEA8/2020|20-06-15 1 +England/MILK-993300/2020|20-08-26 1 +Wales/PHWC-162751/2020|20-05-27 7 +England/ALDP-497D12/2020|20-06-03 1 +USA/WI-UW-982/2020|MT846668.1|20-07-21 1 +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 7 +USA/FL-QDX-228/2020|MT806770.1|20-04-18 1 +USA/VA-DCLS-0920/2020|MT929088.1|20-05 1 +England/ALDP-71D072/2020|20-07-01 1 +England/MILK-9573DB/2020|20-06-10 1 +England/QEUH-9B6EAC/2020|20-09-09 5 +England/NORT-2A4CAE/2020|20-09-17 1 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 7 +Northern_Ireland/NIRE-FB369/2020|20-08-31 1 +England/LEED-2AA4EC/2020|20-04-06 8 +England/LEED-2AA394/2020|20-03-31 1 +England/BRIS-1854318/2020|20-04-28 7 +England/BRIS-12E6FA/2020|20-04-20 2 +Wales/PHWC-16881C/2020|20-04-21 5 +Wales/PHWC-3612C/2020|20-04-28 1 +England/SHEF-C184F/2020|20-08-31 5 +England/ALDP-9D8FFC/2020|20-09-18 7 +England/NORT-28B1EA/2020|20-04-18 1 +England/NORT-28B28D/2020|20-04-18 1 +England/ALDP-5D52BE/2020|20-06-18 7 +England/ALDP-6FAF24/2020|20-06-29 7 +England/MILK-B01F25/2020|20-10-23 7 +Switzerland/210050/2020|LR882268.1|20-07-19 1 +England/ALDP-691499/2020|20-07-02 7 +England/ALDP-4A2BFC/2020|20-05-22 1 +England/ALDP-9B5BC4/2020|20-08-28 7 +England/ALDP-49F5B8/2020|20-05-22 7 +USA/WA-S2573/2020|MT831840.1|20-06-17 1 +USA/WA-S2761/2020|MT947580.1|20-07-29 7 +England/QEUH-A9F5D0/2020|20-10-20 7 +England/QEUH-96AEF2/2020|20-08-15 2 +Netherlands/NA_436/2020|LR883367.1|20-04-07 5 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 1 +AUS/VIC3114/2020|MT972550.1|20-07-06 1 +AUS/VIC9664/2020|MW156172.1|20-08-12 5 +England/MILK-9C4087/2020|20-09-09 1 +England/QEUH-96F349/2020|20-08-17 7 +England/BIRM-5FC3B/2020|20-05-28 6 +England/PHEC-13ADF/2020|20-03-13 1 +England/ALDP-951E49/2020|20-06-10 7 +England/ALDP-9557A4/2020|20-06-12 1 +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 1 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 1 +Switzerland/220001/2020|LR882220.1|20-07-24 7 +England/BIRM-6BECD/2020|20-11-17 1 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 1 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 1 +England/ALDP-94A63C/2020|20-06-11 1 +England/ALDP-52A636/2020|20-06-01 1 +ZW-6983|LR963462.1|20-05-01 1 +ZW-6978|LR963455.1|20-05-01 1 +England/ALDP-952A44/2020|20-06-21 1 +England/QEUH-9B4A22/2020|20-09-07 1 +Scotland/CVR3062/2020|20-04-24 1 +Scotland/CVR2435/2020|20-04-14 1 +England/OXON-B0922/2020|20-03-28 1 +AUS/VIC995/2020|MT451680.1|20-03-31 1 +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 1 +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 1 +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 1 +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 1 +USA/COVID20-0537/2020|MT981422.1|20-06-04 2 +USA/COVID20-1129/2020|MW067826.1|20-07-10 2 +England/CAMB-83FBD/2020|20-04-22 1 +England/CAMB-1AD004/2020|20-04-30 1 +England/ALDP-952A53/2020|20-06-13 1 +England/ALDP-95A745/2020|20-06-13 1 +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 1 +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 1 +USA/UT-05592/2020|MW054143.1|20-06-01 1 +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 1 +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 4 +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 1 +USA/UT-02970/2020|MW053933.1|20-05-01 1 +USA/UT-08378/2020|MW206039.1|20-05-26 1 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 1 +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 1 +England/MILK-9934B2/2020|20-08-26 1 +Switzerland/240029/2020|LR880608.1|20-08-10 1 +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 1 +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 1 +England/MILK-958598/2020|20-06-09 1 +England/ALDP-4F4092/2020|20-06-24 1 +England/LIVE-A91F7/2020|20-03-25 1 +England/CAMB-1AE865/2020|20-04-30 2 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 1 +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 1 +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 1 +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 1 +England/ALDP-955F15/2020|20-06-08 1 +England/MILK-9A6856/2020|20-08-31 1 +England/ALDP-94EB75/2020|20-06-17 1 +England/ALDP-6E2806/2020|20-07-01 2 +USA/WA-S4490/2021|MW648014.1|21-01-21 1 +USA/WA-S3458/2020|MW494078.1|20-12-07 1 +England/MILK-5642D2/2020|20-06-10 2 +England/CAMB-1B3593/2020|20-05-26 2 +Switzerland/310517/2020|LR898824.1|20-10-08 1 +England/MILK-9AB1A1/2020|20-08-31 1 +Scotland/QEUH-A9E7BD/2020|20-10-20 1 +Scotland/EDB7778/2020|20-09-16 1 +SAU/578/2020|MT755891.1|20-02-17 1 +Scotland/EDB6640/2020|20-05-28 1 +Scotland/CVR3970/2020|20-08-22 1 +England/MILK-A7D5AB/2020|20-10-13 3 +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 3 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 1 +Scotland/EDB6391/2020|20-05-13 1 +Scotland/EDB5108/2020|20-03-31 1 +USA/VA-DCLS-0489/2020|MT951943.1|20-05 1 +USA/VA-DCLS-1388/2020|MW067734.1|20-07 1 +Scotland/QEUH-961BB8/2020|20-08-02 1 +Switzerland/250091/2020|LR881897.1|20-08-19 1 +England/MILK-9750EF/2020|20-08-21 1 +England/MILK-9C3D45/2020|20-09-09 1 +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 2 +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 1 +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 1 +England/PHEC-14F392/2020|20-12-24 1 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 1 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 1 +England/CAMB-737D6/2020|20-03-31 1 +England/CAMB-1B08D9/2020|20-05-04 1 +IND/GBRC238b/2020|MT676367.1|20-06-12 2 +IND/GBRC209a/2020|MT664202.1|20-06-11 1 +Wales/PHWC-360A7/2020|20-04-29 1 +Wales/PHWC-260AA/2020|20-03-24 1 +USA/WA-S2012/2020|MT831128.1|20-06-04 2 +USA/WA-S1775/2020|MT834200.1|20-06-01 1 +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 1 +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 1 +England/ALDP-651C9D/2020|20-07-04 7 +Scotland/CVR3919/2020|20-06-21 1 +England/QEUH-96E27A/2020|20-08-20 2 +England/MILK-74C001/2020|20-06-29 5 +England/ALDP-955FAC/2020|20-06-08 1 +England/ALDP-49E391/2020|20-05-20 1 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 1 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 1 +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 1 +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 1 +England/QEUH-9DE381/2020|20-09-21 1 +England/QEUH-95E7D8/2020|20-08-06 7 +England/NOTT-111E3E/2020|20-06-10 5 +England/NOTT-111117/2020|20-05-03 1 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 1 +Scotland/CVR41/2020|20-03-13 1 +England/ALDP-9ECEAD/2020|20-05-05 1 +England/BRIS-12DC53/2020|20-05-02 1 +England/ALDP-A525BB/2020|20-10-07 1 +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 8 +England/MILK-A45AF8/2020|20-10-06 7 +Scotland/QEUH-A613BF/2020|20-10-13 1 +Switzerland/180039/2020|LR861669.1|20-07-01 1 +Switzerland/220022/2020|LR882244.1|20-07-27 1 +England/NORW-E8709/2020|20-04-18 6 +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 8 +England/MILK-A18C8F/2020|20-10-03 1 +England/ALDP-C3C1FD/2020|20-12-10 1 +Wales/PHWC-15E0B7/2020|20-05-13 1 +Wales/PHWC-30957/2020|20-04-08 1 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 1 +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 1 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 5 +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 1 +England/MILK-ABBCCA/2020|20-10-21 7 +England/MILK-ACCF27/2020|20-10-21 7 +England/ALDP-907D09/2020|20-06-22 1 +England/MILK-85E3E4/2020|20-07-18 1 +Wales/PHWC-16578B/2020|20-06-07 1 +Wales/PHWC-166104/2020|20-05-15 7 +England/ALDP-94D8F7/2020|20-06-20 1 +England/NOTT-111BFB/2020|20-05-29 1 +England/PORT-2F5752/2020|20-10-13 1 +England/QEUH-96A4C3/2020|20-08-13 1 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 6 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 1 +England/ALDP-9D9104/2020|20-09-18 7 +England/CAMC-A40F67/2020|20-10-06 1 +England/WSFT-25C13CB/2020|20-04-17 1 +England/PORT-2F5D9C/2020|20-06-05 1 +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 1 +DV_IZSPB_236_S50|LR992121.1|20-08-29 1 +England/MILK-62FD59/2020|20-07-05 1 +England/ALDP-90DDC7/2020|20-06-26 1 +USA/IL-UW-1082/2020|MT929034.1|20-07-27 1 +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 7 +USA/WA-S2598/2020|MT831859.1|20-06-18 5 +USA/WA-S1840/2020|MT834024.1|20-05-27 8 +USA/WA-S1246/2020|MT821587.1|20-05-11 8 +USA/WA-S820/2020|MT641503.1|20-04-15 1 +England/CAMB-80B43/2020|20-04-11 1 +England/CAMB-7666D/2020|20-03-29 1 +AUS/VIC13094/2020|MW185501.1|20-07-31 1 +AUS/VIC9179/2020|MW153248.1|20-08-21 1 +AUS/VIC11646/2020|MW155572.1|20-07-22 1 +England/CAMC-947259/2020|20-07-21 1 +England/MILK-9927C9/2020|20-08-27 1 +England/CAMB-1AA438/2020|20-04-17 1 +England/CAMB-1AFB7A/2020|20-05-02 1 +England/NORT-282796/2020|20-03-28 1 +England/NORT-2839AE/2020|20-04-01 5 +England/QEUH-96E025/2020|20-08-18 1 +Scotland/QEUH-94375E/2020|20-08-02 1 +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 1 +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 1 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 7 +England/MILK-1169960/2021|21-01-25 5 +USA/WA-S4100/2021|MW555971.1|21-01-18 1 +USA/WA-S4074/2021|MW555949.1|21-01-19 1 +England/ALDP-CB55B4/2020|20-12-20 1 +England/CAMC-CF4B5D/2020|20-12-21 1 +Wales/PHWC-340A9/2020|20-04-20 1 +Wales/PHWC-1667A8/2020|20-05-26 1 +England/PHEC-14F5D8/2020|20-12-29 1 +Scotland/EDB11343/2020|20-12-26 1 +England/LIVE-DAB556/2020|20-10-18 2 +England/PHEC-14DE93/2020|20-11-11 1 +USA/COVID20-0777/2020|MW002812.1|20-06-26 1 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 1 +USA/VA-DCLS-1512/2020|MW197472.1|20-07 2 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 1 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 1 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 1 +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 1 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 1 +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 1 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 1 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 1 +USA/1453xE2/2020|MW521402.1|20-07-05 1 +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 1 +USA/WA-S2867/2020|MW173410.1|20-09-20 1 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 2 +England/CAMC-947D3A/2020|20-07-17 1 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 1 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 3 +England/RAND-12B3F28/2021|21-02-09 1 +England/RAND-12B3CF4/2021|21-02-09 1 +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 1 +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 1 +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 2 +USA/WI-UW-994/2020|MT846680.1|20-07-20 1 +England/BRIS-12C762/2020|20-05-13 1 +England/BRIS-127AD7/2020|20-04-16 1 +England/BRIS-12D9F2/2020|20-05-06 1 +England/BRIS-12B156/2020|20-05-08 1 +England/ALDP-B75065/2020|20-11-12 2 +Scotland/QEUH-AD4AFE/2020|20-10-27 2 +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 1 +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 1 +England/MILK-EB78C6/2021|21-01-02 1 +England/CAMC-C44338/2020|20-12-10 4 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 1 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 1 +Switzerland/300264/2020|LR898541.1|20-10-01 1 +England/QEUH-963433/2020|20-08-10 1 +England/MILK-ACC08E/2020|20-10-21 2 +Scotland/QEUH-9696CE/2020|20-08-14 1 +England/MILK-BB0022/2020|20-11-18 1 +England/ALDP-A6CC8C/2020|20-10-14 2 +Northern_Ireland/NIRE-FB967/2020|20-08-17 1 +England/QEUH-7A4BBB/2020|20-07-14 1 +England/BRIS-185470D/2020|20-05-01 1 +England/BRIS-12AF02/2020|20-05-01 1 +England/ALDP-9558ED/2020|20-06-12 1 +England/NORT-286255/2020|20-09-16 1 +Switzerland/250060/2020|LR881882.1|20-08-18 1 +England/QEUH-A77F0D/2020|20-10-12 1 +England/LOND-126DFA5/2020|20-12-27 5 +Wales/PHWC-4846A4/2020|20-10-24 3 +England/QEUH-AD487C/2020|20-10-26 1 +England/QEUH-9B7B2C/2020|20-09-03 1 +England/CAMB-72B44/2020|20-03-22 1 +England/CAMB-822D3/2020|20-04-12 1 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 1 +Japan/TKYE624705_2020/2020|LC593810.1|20-07 1 +England/QEUH-9F9265/2020|20-09-26 1 +England/QEUH-98EE43/2020|20-08-25 1 +IND/GBRC455b/2020|MW600453.1|20-12-24 1 +IND/GBRC455a/2020|MW600436.1|20-12-24 2 +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 1 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 1 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 2 +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 2 +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 1 +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 1 +England/MILK-95862C/2020|20-06-11 7 +England/ALDP-94EF88/2020|20-06-16 1 +Scotland/QEUH-A00DF0/2020|20-10-02 5 +England/ALDP-9CC5BD/2020|20-09-15 7 +England/ALDP-9BEB16/2020|20-09-09 1 +England/ALDP-A95376/2020|20-10-19 1 +England/QEUH-B10460/2020|20-11-02 2 +Scotland/QEUH-96D5CD/2020|20-08-20 1 +England/CAMB-1AE7FF/2020|20-04-29 1 +England/CAMB-762D2/2020|20-03-28 7 +USA/WA-S1222/2020|MT821613.1|20-05-08 1 +USA/WA-S1655/2020|MT834136.1|20-05-29 3 +England/MILK-BB0F16/2020|20-11-17 1 +England/CAMC-BBDD4C/2020|20-11-22 1 +Scotland/EDB11342/2020|20-12-26 1 +England/QEUH-CAF17D/2020|20-12-15 1 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 1 +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 1 +Scotland/QEUH-969725/2020|20-08-14 1 +England/QEUH-AD1648/2020|20-10-26 1 +England/MILK-A192C8/2020|20-10-01 1 +England/QEUH-9F3FDD/2020|20-09-24 1 +England/CAMC-1263B05/2021|21-02-10 1 +England/QEUH-AD3822/2020|20-10-26 1 +England/MILK-9A94E6/2020|20-09-01 1 +England/MILK-566C5A/2020|20-06-12 1 +England/CAMC-C2CDFC/2020|20-12-07 1 +England/MILK-CAA0EE/2020|20-12-18 1 +England/TFCI-26FA9B7/2020|20-12-31 1 +England/MILK-B94ACC/2020|20-11-13 1 +England/QEUH-96A29C/2020|20-08-13 1 +England/ALDP-9EA6D4/2020|20-09-24 1 +England/MILK-A6AEC4/2020|20-10-09 1 +England/MILK-B889A0/2020|20-11-14 1 +England/MILK-ACEE55/2020|20-10-21 1 +Switzerland/260079/2020|LR882418.1|20-08-25 1 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 1 +USA/WA-S2808/2020|MW077495.1|20-08-31 1 +England/CAMC-B3582D/2020|20-11-05 1 +England/MILK-A796E8/2020|20-10-14 1 +England/MILK-BB0031/2020|20-11-18 1 +Scotland/QEUH-96B4E0/2020|20-08-17 1 +England/PHEC-152C73/2020|20-11-16 1 +England/MILK-9AA782/2020|20-08-31 1 +England/ALDP-B82A0D/2020|20-11-14 1 +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 1 +England/MILK-A79D10/2020|20-10-15 2 +England/PHEC-148F95/2020|20-10-15 1 +England/MILK-A180DE/2020|20-10-01 1 +England/NORW-222D0F/2020|20-12-20 1 +England/MILK-F72F49/2021|21-01-05 1 +England/ALDP-94DD07/2020|20-06-19 1 +England/ALDP-49EC3C/2020|20-05-20 1 +PER/covper024/2020|MW030255.1|20-07-04 1 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 1 +PER/covper011/2020|MW030242.1|20-07-04 8 +PER/covper040/2020|MW030271.1|20-05-05 1 +England/MILK-B1553B/2020|20-10-23 1 +England/MILK-66F889/2020|20-07-03 5 +England/QEUH-96BAA2/2020|20-08-14 1 +Wales/ALDP-B19FFD/2020|20-11-01 1 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 1 +PER/covper018/2020|MW030249.1|20-07-03 7 +England/CAMC-C3E586/2020|20-12-10 1 +England/CAMC-DE5550/2020|20-12-29 1 +Japan/TKYE630414_2020/2020|LC593818.1|20-08 5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_23_neighbourhood.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,1097 @@ +sample neighborhood_size +England/BRIS-1853249/2020|20-04-02 11 +Wales/PHWC-25B04/2020|20-03-24 11 +NPL/61-TW/2020|MT072688.1|20-01-13 0 +Wales/LIVE-A6831/2020|20-03-16 11 +Scotland/EDB1317/2020|20-04-09 11 +Scotland/EDB354/2020|20-03-30 11 +England/SHEF-BFF8B/2020|20-03-25 0 +England/LCST-24D7202/2020|20-06-22 0 +England/SHEF-BFFC7/2020|20-03-25 11 +England/PHEC-1E01E/2020|20-04-03 11 +DP0476/2020|LC571003.1|20-02-16 0 +DP0191/2020|LC570980.1|20-02-15 0 +England/LIVE-A5D06/2020|20-03-17 11 +England/LIVE-A065B/2020|20-05-27 11 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 11 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 11 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 11 +NED/NB02_13KS/2020|MT457397.1|20-04-29 11 +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 0 +USA/CA-CZB-1250/2020|MT534320.1|20-04-12 11 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 0 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 0 +England/BRIS-1258A2/2020|20-03-29 0 +England/SHEF-BFEBB/2020|20-03-24 0 +USA/CA-CZB-1041/2020|MT438759.1|20-04-22 0 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 0 +England/LIVE-9E66F/2020|20-04-10 11 +Scotland/CVR705/2020|20-03-26 11 +England/SHEF-BFF21/2020|20-03-25 0 +England/LIVE-A4C46/2020|20-03-12 0 +Switzerland/100159/2020|LR884273.1|20-03-16 0 +England/EXET-135818/2020|20-04-11 13 +France/40002VJ/2020|MT470179.1|20-03 15 +Wales/PHWC-310CA/2020|20-04-11 0 +Scotland/GCVR-171160/2020|20-03-26 11 +England/BRIS-130E2A/2020|20-03-24 11 +USA/WI-UW-298/2020|MT706406.1|20-04-13 0 +USA/WI-UW-314/2020|MT706422.1|20-04-16 0 +USA/WI-UW-325/2020|MT706432.1|20-04-24 2 +USA/WI-UW-290/2020|MT706398.1|20-04-08 0 +Scotland/CVR3488/2020|20-05-12 0 +Scotland/CVR780/2020|20-03-27 0 +Scotland/EDB5629/2020|20-03-24 0 +HKG/HKU-904a/2020|MT365032.1|20-01-30 4 +Scotland/EDB5040/2020|20-04-02 0 +England/LOND-126031F/2020|20-03-15 0 +Scotland/EDB046/2020|20-03-15 13 +England/BRIS-12EEB6/2020|20-04-22 0 +Scotland/EDB199/2020|20-03-26 0 +England/CAMB-74A09/2020|20-03-18 0 +England/ALDP-9EE3AC/2020|20-05-06 0 +USA/WA3-UW1/2020|MT163716.1|20-02-27 0 +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 0 +England/ALDP-52C0FA/2020|20-06-01 0 +England/LIVE-9D7D6/2020|20-04-15 0 +Japan/TKYE63557_2020/2020|LC581365.1|20-03 0 +Japan/TKYE64688_2020/2020|LC581375.1|20-03 0 +USA/CA-QDX-33/2020|MT614459.1|20-03-15 0 +USA/DC-HP00063/2020|MT646075.1|20-03-13 0 +England/PHEC-1A601/2020|20-03-04 0 +England/PHEC-2275E/2020|20-06-22 0 +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 0 +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 0 +Wales/PHWC-285F4/2020|20-04-01 6 +England/BRIS-130965/2020|20-04-13 6 +Scotland/CVR44/2020|20-03-13 0 +Scotland/CVR839/2020|20-03-27 0 +Scotland/GCVR-170107/2020|20-03-23 0 +Scotland/CVR207/2020|20-03-18 0 +England/CAMB-8042A/2020|20-04-10 0 +England/CAMB-737B8/2020|20-03-30 13 +USA/WA-S885/2020|MT642386.1|20-04-22 0 +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 0 +England/BRIS-1265AA/2020|20-04-10 0 +AUS/NT38/2020|MT641726.1|20 0 +England/BRIS-123965/2020|20-04-07 0 +IND/Isolate_9088/2020|MW555597.1|20-06-30 0 +England/BRIS-125347/2020|20-03-27 0 +IND/763/2020|MT577009.1|20 0 +England/CAMB-7772D/2020|20-03-31 11 +England/BRIS-12208F/2020|20-03-21 11 +Scotland/EDB1824/2020|20-04-16 0 +Spain/H12_46/2020|LR884009.1|20-04-08 0 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 4 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 4 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 0 +Spain/R10_33/2020|LR884127.1|20-03-02 0 +AUS/VIC1255/2020|MT451830.1|20-04-11 0 +AUS/VIC1878/2020|MT745600.1|20-03-29 0 +England/NORT-284A9B/2020|20-03-25 0 +Scotland/CVR10/2020|20-03-10 0 +England/CAMB-75BD8/2020|20-03-29 0 +UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 0 +USA/WI-UW-26/2020|MT706147.1|20-03-24 0 +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 0 +USA/ID-QDX-1727/2020|MW190466.1|20-03-17 0 +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 0 +USA/IN-QDX-184/2020|MT786818.1|20-04-28 0 +USA/WI-UW-558/2020|MT750137.1|20-06-25 0 +AUS/VIC2260/2020|MT972173.1|20-06-22 0 +England/EXET-1358BE/2020|20-04-15 0 +USA/FL-BPHL-0553/2020|MT834693.1|20-06-30 5 +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 7 +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 9 +Switzerland/100198/2020|LR884312.1|20-03-17 0 +England/NOTT-10E1B3/2020|20-03-19 12 +USA/WI-UW-37/2020|MT706158.1|20-03-22 10 +Scotland/CVR2927/2020|20-04-22 0 +Scotland/GCVR-173C30/2020|20-04-07 0 +USA/CA-CZB-2091/2020|MT750490.1|20-05-07 4 +Switzerland/140091/2020|LR824563.1|20-04-18 0 +England/BRIS-12755E/2020|20-04-22 7 +England/BRIS-12468B/2020|20-04-09 16 +England/NORW-E9DF7/2020|20-05-02 0 +Scotland/EDB156/2020|20-03-23 0 +Wales/PHWC-27B20/2020|20-03-30 0 +Wales/PHWC-2624A/2020|20-03-27 0 +Wales/PHWC-2BF8A/2020|20-04-02 0 +Wales/PHWC-29E43/2020|20-04-04 0 +England/LOND-D3534/2020|20-03-27 0 +England/PHEC-20C24/2020|20-04-21 0 +England/CAMB-7D2EA/2020|20-04-06 0 +England/LIVE-A63E5/2020|20-03-18 0 +Wales/PHWC-260C8/2020|20-03-26 0 +England/BRIS-12F969/2020|20-03-30 0 +England/PHEC-2083F/2020|20-04-13 2 +Wales/PHWC-16C6F0/2020|20-06-09 0 +Wales/PHWC-27461/2020|20-03-31 0 +Wales/PHWC-29F13/2020|20-04-01 0 +IND/GBRC99/2020|MT509504.1|20-05-06 0 +IND/GBRC31/2020|MT467247.1|20-04-29 0 +AUS/VIC1239/2020|MT451821.1|20-04-02 0 +AUS/VIC1282/2020|MW153048.1|20-04-08 0 +IND/GBRC128/2020|MT539172.1|20-05-02 0 +IND/GBRC123/2020|MT539176.1|20-05-02 0 +POL/PL_MCB_32/2020|MW273814.1|20-04-22 9 +POL/PL_MCB_75/2020|MW273857.1|20-04-16 0 +England/CAMB-7BED9/2020|20-04-04 0 +Netherlands/NA_302/2020|LR878041.1|20-04-01 0 +USA/WI-UW-1385/2020|MW035549.1|20-09-06 0 +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 0 +Northern_Ireland/NIRE-1022CB/2020|20-03-25 0 +Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 0 +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 9 +GRC/202_32984/2020|MT459870.1|20-03-12 0 +USA/FHCRC-19442/2020|MW593677.1|20-07-30 0 +USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07 0 +Wales/PHWC-31CB7/2020|20-04-14 0 +Wales/PHWC-26D2B/2020|20-03-30 0 +MYS/188407/2020|MT372480.1|20-03-18 0 +AUS/VIC961/2020|MT451653.1|20-03-27 11 +Spain/R11/2020|LR884126.1|20-03-06 0 +Spain/LP19_4952/2020|LR884066.1|20-03-07 0 +USA/COVID20-0008/2020|MT764174.1|20-03-10 0 +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 0 +USA/CA-QDX-1421/2020|MW065371.1|20-03-18 0 +USA/CA-QDX-2080/2020|MW190832.1|20-03-19 0 +England/CAMB-76515/2020|20-03-29 0 +England/CAMB-1AE294/2020|20-04-27 0 +England/LEED-2A8D10/2020|20-03-31 0 +England/CAMB-1AC6F4/2020|20-04-21 11 +Scotland/EDB2049/2020|20-04-18 0 +England/CAMB-7EBDF/2020|20-04-07 0 +Scotland/CVR3417/2020|20-05-07 11 +Scotland/CVR1519/2020|20-04-03 0 +England/MILK-93B73B/2020|20-06-21 11 +England/MILK-9589F6/2020|20-06-15 4 +England/BRIS-128441/2020|20-04-16 0 +England/CAMB-7C39D/2020|20-04-13 11 +England/ALDP-50085E/2020|20-06-27 11 +England/PHEC-127E8/2020|20-03-28 0 +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 0 +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 0 +USA/FL-BPHL-0540/2020|MT834625.1|20-03-21 0 +CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02 8 +USA/CA-CZB-1434/2020|MT628140.1|20-03-25 0 +USA/VA-DCLS-0676/2020|MT911804.1|20-04 0 +USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 0 +USA/MI-QDX-476/2020|MW064508.1|20-03-23 0 +USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 0 +USA/CA-CZB-14951/2020|MW565126.1|20-06-06 9 +USA/WI-UW-1105/2020|MT929055.1|20-07-24 0 +USA/RML-22/2020|MW221270.1|20-08-30 0 +Scotland/CVR2931/2020|20-04-22 0 +Scotland/GCVR-172150/2020|20-03-30 0 +England/BRIS-124885/2020|20-03-24 0 +England/BRIS-122C4F/2020|20-04-02 0 +USA/WI-UW-1046/2020|MT928999.1|20-07-29 0 +USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 23 +Scotland/CVR3054/2020|20-04-24 23 +England/MILK-95698F/2020|20-06-06 0 +England/CAMB-79ECC/2020|20-04-01 0 +USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 0 +USA/AK-PHL414/2020|MT946886.1|20-06-03 0 +USA/AK-PHL689/2020|MW173160.1|20-06-29 0 +England/MILK-974596/2020|20-08-17 0 +Switzerland/310363/2020|LR898676.1|20-10-07 0 +England/MILK-978626/2020|20-07-30 9 +England/MILK-9A565D/2020|20-09-03 9 +USA/NM-QDX-264/2020|MT806796.1|20-04-30 9 +USA/CA-CZB-10902/2020|MW276406.1|20-08-19 9 +Scotland/EDB1198/2020|20-04-08 9 +England/PHEC-20A84/2020|20-04-20 9 +Scotland/EDB6324/2020|20-06-01 9 +Scotland/EDB4579/2020|20-05-06 9 +Wales/PHWC-360E3/2020|20-04-26 16 +USA/CA-QDX-2630/2020|MW191335.1|20-03-15 0 +Netherlands/NA_289/2020|LR878031.1|20-03-31 16 +France/10065EE/2020|MT470176.1|20-03 16 +France/10036BG/2020|MT470106.1|20-03 0 +IHUCOVID-0033|LR794417.1|? 0 +England/PORT-2D0D4C/2020|20-04-27 16 +Switzerland/100210/2020|LR884314.1|20-03-18 0 +POL/PL_MCB_72/2020|MW273854.1|20-05-10 16 +POL/PL_MCB_97/2020|MW273879.1|20-05-10 0 +England/QEUH-9CE80D/2020|20-09-17 0 +England/QEUH-990752/2020|20-08-29 0 +AUS/VIC38/2020|MT450953.1|20-03-11 0 +IHUCOVID-0133|LR794459.1|? 0 +USA/MN67-MDH67/2020|MT911566.1|20-03-14 0 +Netherlands/NA_292/2020|LR878032.1|20-04-01 0 +Switzerland/101166/2020|LR824397.1|20-03-31 0 +Switzerland/100154/2020|LR824311.1|20-03-16 0 +PER/covper020/2020|MW030251.1|20-07-03 0 +PER/covper091/2020|MW030227.1|20-03-17 0 +England/ALDP-49A5AE/2020|20-06-13 4 +England/ALDP-4A2A77/2020|20-05-22 0 +Wales/PHWC-16930B/2020|20-04-01 0 +Wales/PHWC-34285/2020|20-04-14 0 +USA/UT-08320/2020|MW206019.1|20-05-15 0 +USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 0 +England/QEUH-B2DD0B/2020|20-11-03 23 +England/MILK-A7B0BB/2020|20-10-14 0 +AUS/VIC989/2020|MT451674.1|20-03-31 0 +AUS/VIC1056/2020|MT451723.1|20-04-03 0 +England/BRIS-12B2BD/2020|20-05-02 0 +England/BRIS-128DCE/2020|20-04-14 0 +Scotland/GCVR-1725BE/2020|20-04-04 0 +Scotland/CVR30/2020|20-03-13 0 +England/NORT-289814/2020|20-04-01 0 +England/ALDP-9ED57A/2020|20-05-08 0 +USA/MA_MGH_00165/2020|MT520528.1|20-03-26 0 +USA/MA_MGH_00711/2020|MT520198.1|20-04-08 0 +Scotland/CVR129/2020|20-03-13 0 +Scotland/CVR52/2020|20-03-14 0 +GRC/208_33922/2020|MT459876.1|20-03-14 0 +England/CAMC-947875/2020|20-07-13 0 +GHA/34927_S20/2020|MT890226.1|20-05-23 0 +GHA/35563_S37/2020|MT890230.1|20-05-24 0 +England/CAMC-C91F38/2020|20-12-11 0 +SLE/KGH-G-8626/2020|MT872492.1|20-04-10 0 +Scotland/EDB2100/2020|20-04-19 0 +England/CAMB-1AC7D3/2020|20-04-22 0 +Scotland/CVR2381/2020|20-04-13 0 +Scotland/CVR2197/2020|20-04-11 0 +England/NORW-E8C37/2020|20-04-13 0 +England/NORW-E75A6/2020|20-05-04 0 +Wales/PHWC-3122E/2020|20-04-10 0 +Wales/PHWC-1645EC/2020|20-05-10 0 +England/ALDP-9ED9F6/2020|20-05-05 0 +England/ALDP-944BD9/2020|20-06-07 0 +England/LEED-2A91D7/2020|20-04-06 7 +England/LEED-2A87C7/2020|20-04-03 0 +USA/WA-UW-4105/2020|MT358746.1|20-03-31 0 +USA/WA-UW-2220/2020|MT345839.1|20-03-23 0 +USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 0 +USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 0 +USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 0 +USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 0 +USA/CA-CZB-11119/2020|MW276517.1|20-05-29 0 +USA/CA-CZB-11132/2020|MW276510.1|20-05-23 0 +Wales/PHWC-1658A6/2020|20-05-19 0 +Wales/PHWC-2E0A2/2020|20-04-10 0 +Scotland/EDB3137/2020|20-04-06 0 +Scotland/EDB2810/2020|20-03-30 0 +USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 0 +USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 0 +USA/CA-CZB-1517/2020|MT628191.1|20-05-13 0 +USA/CA-CZB-1793/2020|MT750334.1|20-04-16 0 +USA/WA-UW-2108/2020|MT345811.1|20-03-24 29 +USA/MN-MDH-1434/2020|MT893000.1|20-03-31 0 +USA/WI-UW-1119/2020|MT929068.1|20-07-27 0 +USA/WI-UW-1005/2020|MT846691.1|20-07-17 16 +USA/WI-UW-1092/2020|MT929042.1|20-07-27 0 +USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 0 +USA/WA-QDX-235/2020|MT806806.1|20-04-27 0 +USA/WA-S1266/2020|MT821676.1|20-05-13 15 +USA/UT-QDX-2224/2020|MW191025.1|20-03-13 0 +USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 0 +USA/FL-QDX-1620/2020|MW190373.1|20-03-16 0 +USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 0 +USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 0 +USA/MN-MDH-1557/2020|MT958254.1|20-08-03 0 +USA/MN-MDH-1596/2020|MT997714.1|20-05-12 0 +USA/CA-CZB0731/2020|MT385450.1|20-03-31 0 +USA/MA_MGH_00458/2020|MT520347.1|20-04-04 0 +USA/MA_MGH_00445/2020|MT520273.1|20-04-01 0 +USA/MN-MDH-1464/2020|MT919997.1|20-03-24 0 +USA/WA-UW-2008/2020|MT326031.1|20-03-24 0 +USA/WA-UW-6327/2020|MT412324.1|20-04-02 0 +USA/WA-UW-3832/2020|MT358685.1|20-03-26 0 +USA/MI-QDX-371/2020|MW064412.1|20-03-23 0 +USA/MI-QDX-298/2020|MW064340.1|20-03-21 0 +USA/DC-HP00089/2020|MT509482.1|20-03-31 0 +USA/UT-03817/2020|MT873871.1|20-04-03 0 +USA/MN-MDH-1643/2020|MW020074.1|20-06-08 0 +USA/MN-MDH-1610/2020|MT997728.1|20-04-28 0 +USA/IL-UW-1065/2020|MT929017.1|20-04-20 0 +USA/CA-QDX-2335/2020|MW191073.1|20-03-17 0 +USA/MI-QDX-620/2020|MW064645.1|20-03-17 0 +USA/MI-QDX-595/2020|MW064630.1|20-03-18 0 +USA/CA-CZB-2223/2020|MW035933.1|20-05-31 6 +USA/CA-CZB-4063/2020|MW134429.1|20-08-04 0 +England/OXON-B15A5/2020|20-04-29 0 +England/BRIS-129D72/2020|20-04-15 0 +USA/MN-MDH-1616/2020|MT997734.1|20-04-24 0 +USA/MN-CDC-6364/2020|MT967959.1|20-05-21 0 +USA/CA-QDX-2032/2020|MW190749.1|20-03-17 0 +USA/CA-QDX-2576/2020|MW191310.1|20-03-16 0 +USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 0 +USA/CT-UW-4372/2020|MT345874.1|20-03-30 5 +England/BRIS-12BF3E/2020|20-05-09 37 +England/BRIS-12DF1E/2020|20-06-04 0 +USA/CA-CZB-3630/2020|MW134171.1|20-07-23 0 +USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26 0 +Northern_Ireland/NIRE-1021DD/2020|20-03-14 0 +USA/CA-CZB-2429/2020|MW036038.1|20-05-21 0 +England/PHEC-15A73/2020|20-03-29 0 +USA/CA-QDX-796/2020|MW064788.1|20-03-23 0 +B90|LR898037.1|? 0 +O9|LR963074.1|? 0 +USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 0 +USA/WI-UW-738/2020|MT772509.1|20-06-30 0 +USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 0 +USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 0 +ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 0 +England/CAMC-946515/2020|20-07-15 0 +USA/WI-UW-249/2020|MT706376.1|20-03-16 7 +USA/WI-UW-84/2020|MT706205.1|20-03-24 7 +USA/VA-DCLS-0593/2020|MT951960.1|20-03 11 +USA/TX-CDC-3009/2020|MT512440.1|20-03-10 0 +USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 7 +USA/MD-MDH-0286/2020|MW240750.1|20-10-13 7 +USA/UT-04888/2020|MW084559.1|20-05-26 7 +USA/UT-04282/2020|MW084509.1|20-05-14 7 +USA/MA_MGH_00136/2020|MT520439.1|20-03-25 0 +USA/MA_MGH_00486/2020|MT520279.1|20-03-27 0 +Wales/PHWC-15DFD9/2020|20-05-14 0 +Wales/PHWC-2AF12/2020|20-04-06 7 +IHUCOVID-0441|LR794655.1|? 0 +IHUCOVID-0428|LR794641.1|? 0 +hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? 0 +Switzerland/100363/2020|LR884411.1|20-03-20 0 +USA/UT-01683/2020|MT536956.1|20-04-13 0 +USA/UT-03892/2020|MT711875.1|20-04-13 0 +USA/CA-CZB-1414/2020|MT628125.1|20-03-16 9 +USA/CA-CZB-11962/2020|MW276532.1|20-06-17 15 +England/NORW-E7EBA/2020|20-05-06 0 +USA/CA-QDX-1044/2020|MW065007.1|20-03-17 0 +USA/WI-UW-413/2020|MT772562.1|20-04-07 0 +USA/WI-UW-288/2020|MT706396.1|20-04-08 0 +USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 0 +USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 9 +USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 0 +USA/TX-QDX-3305/2020|MW522496.1|20-07-23 0 +BHR/740704818/2021|MW661071.1|21-01-26 0 +England/QEUH-E93C6A/2021|21-01-04 0 +Scotland/EDB3341/2020|20-04-08 0 +Scotland/EDB6880/2020|20-04-30 0 +USA/CA-CDC-4728/2020|MW001919.1|20-06-16 3 +USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 0 +England/ALDP-B252AA/2020|20-11-04 3 +USA/CA-CZB-11549/2020|MW276537.1|20-07-12 3 +USA/CA-CZB-11793/2020|MW276612.1|20-09-22 5 +USA/CA-CZB-2502/2020|MW035993.1|20-05-25 3 +USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 3 +USA/MD-MDH-0227/2020|MW157244.1|20-09-23 3 +England/LOND-D5444/2020|20-04-15 3 +Scotland/CVR3238/2020|20-04-26 15 +USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 3 +USA/CA-CZB-3893/2020|MW134296.1|20-07-21 3 +Scotland/EDB3662/2020|20-04-28 3 +England/ALDP-6FB8FB/2020|20-06-29 3 +USA/CA-CDC-4704/2020|MW001903.1|20-06-04 3 +USA/CA-CZB-4000/2020|MW134394.1|20-07-29 3 +England/LIVE-A00F3/2020|20-06-04 3 +England/QEUH-544733/2020|20-05-14 3 +England/MILK-654007/2020|20-07-04 3 +England/OXON-B1781/2020|20-05-04 3 +USA/CA-CZB-3624/2020|MW134177.1|20-07-30 0 +USA/CA-CZB-4040/2020|MW134375.1|20-08-12 3 +USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 0 +USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 0 +England/MILK-977645/2020|20-07-24 0 +England/CAMC-B325A1/2020|20-11-05 24 +England/PHEC-224A2/2020|20-06-08 0 +England/NORW-ECD21/2020|20-05-29 9 +England/NORW-E755B/2020|20-05-04 0 +IND/nimh-19510/2020|MW181843.1|20-05-16 0 +IND/GBRC174b/2020|MT607610.1|20-06-05 0 +Scotland/CVR3629/2020|20-05-24 0 +Scotland/QEUH-5456F9/2020|20-05-13 0 +Switzerland/240009/2020|LR880588.1|20-08-07 0 +Switzerland/240084/2020|LR880634.1|20-08-12 0 +England/LIVE-A65EF/2020|20-03-19 0 +Wales/PHWC-2B7CE/2020|20-04-12 8 +England/ALDP-94D8D9/2020|20-06-20 0 +England/ALDP-9442D4/2020|20-06-07 0 +England/PORT-2D3B4F/2020|20-04-18 0 +England/EXET-136EE8/2020|20-04-20 0 +England/PHEC-215FB/2020|20-04-29 17 +England/PHEC-1B7C1/2020|20-04-08 0 +Switzerland/120182/2020|LR860799.1|20-04-27 15 +England/ALDP-9545BA/2020|20-06-17 12 +England/BRIS-12F78D/2020|20-03-10 17 +Switzerland/100802/2020|LR824314.1|20-03-25 11 +England/NORT-282972/2020|20-03-27 0 +England/CAMB-80554/2020|20-04-09 0 +England/PHEC-20E4C/2020|20-04-16 17 +England/NORT-283B7B/2020|20-04-02 11 +England/ALDP-95665B/2020|20-06-08 17 +England/CAMB-7767B/2020|20-03-31 0 +USA/CA-CZB-1932/2020|MT750412.1|20-04-15 17 +USA/CA-CZB-1885/2020|MT750387.1|20-04-17 17 +USA/CA-CZB-2288/2020|MW036089.1|20-06-19 17 +USA/CA-CZB-3891/2020|MW134292.1|20-07-21 17 +USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 17 +USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 0 +England/SHEF-C9FBB/2020|20-04-11 19 +England/LOND-D6531/2020|20-04-22 0 +England/MILK-99D597/2020|20-08-30 0 +Scotland/EDB6515/2020|20-06-15 0 +FRA/Env-Di/2020|MT709105.1|20-05-14 17 +AUS/VIC1786/2020|MT612326.1|20-05-27 11 +England/CAMB-7620F/2020|20-03-30 17 +TUR/Kafkas-SARSCoV2-0013/2020|MT787564.1|20-07-15 11 +England/PHEC-1DF03/2020|20-04-08 0 +England/CAMB-1AB21F/2020|20-04-18 0 +USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 17 +USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 0 +England/PHEC-16F19/2020|20-03-31 0 +England/GSTT-265D4DF/2020|20-03-19 0 +Northern_Ireland/NIRE-1038B9/2020|20-04-16 17 +Northern_Ireland/NIRE-FCE85/2020|20-04-28 17 +England/BRIS-124C89/2020|20-03-26 11 +USA/WA-UW-6243/2020|MT412316.1|20-04-02 17 +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 0 +England/LOND-D53CF/2020|20-04-15 0 +Scotland/EDB5196/2020|20-05-18 11 +Scotland/CVR3185/2020|20-04-28 0 +England/CAMB-83A9E/2020|20-04-15 17 +England/EXET-136ED9/2020|20-04-22 17 +England/ALDP-955D39/2020|20-06-12 0 +Switzerland/300258/2020|LR898536.1|20-10-01 17 +England/SHEF-D1D3E/2020|20-04-22 12 +England/SHEF-CBE43/2020|20-04-26 0 +England/ALDP-90D6AE/2020|20-06-24 0 +POL/PL_P12/2020|MT511068.1|20-03-31 0 +England/MILK-9E2BDD/2020|20-09-20 17 +Northern_Ireland/NIRE-1088C3/2020|20-09-13 17 +England/PHEC-219E0/2020|20-05-01 17 +England/LEED-2AA59E/2020|20-04-06 11 +England/MILK-8664D7/2020|20-07-17 11 +England/MILK-629D13/2020|20-07-05 0 +England/SHEF-C13B7/2020|20-05-19 0 +England/SHEF-10B2E79/2020|20-05-16 17 +England/OXON-AEF9E/2020|20-04-07 17 +Wales/PHWC-162E7A/2020|20-05-19 0 +England/ALDP-954C6A/2020|20-06-13 17 +England/ALDP-A524EB/2020|20-10-07 0 +Wales/ALDP-6C3E72/2020|20-07-01 11 +England/ALDP-5A15D0/2020|20-06-14 17 +England/PHEC-20B81/2020|20-04-16 0 +England/MILK-992E97/2020|20-08-26 0 +England/QEUH-95DD9B/2020|20-08-07 17 +England/MILK-9570D4/2020|20-06-10 17 +England/LIVE-9BC33/2020|20-04-21 0 +USA/TX-DSHS-0361/2020|MW114997.1|20-06-13 17 +England/CAMB-1B087F/2020|20-05-04 17 +England/PHEC-2223F/2020|20-04-30 17 +England/ALDP-5A2A49/2020|20-06-14 17 +England/ALDP-5A2D6E/2020|20-06-14 17 +USA/WA-S1407/2020|MT821568.1|20-05-19 17 +USA/WA-S1434/2020|MT821707.1|20-05-21 0 +Scotland/CVR1557/2020|20-04-03 17 +Wales/PHWC-34610/2020|20-04-21 0 +BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 17 +BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 17 +England/CAMB-82060/2020|20-04-21 0 +England/CAMB-82E1B/2020|20-04-14 0 +SAU/KFSHRC44/2020|MT820480.1|20-04-11 0 +SAU/KAIMRC67/2020|MT820487.1|20-04-01 11 +Scotland/EDB300/2020|20-03-29 17 +Scotland/CVR3194/2020|20-04-28 11 +England/BIRM-6529A/2020|20-09-30 0 +USA/WA-S2831/2020|MW077478.1|20-09-08 17 +IND/GBRC203a/2020|MT669321.1|20-06-07 0 +USA/WA-S2809/2020|MW077484.1|20-08-31 0 +England/CAMB-7C12A/2020|20-04-13 0 +England/CAMB-83348/2020|20-04-15 0 +England/CAMC-946506/2020|20-07-15 0 +AUS/VIC2173/2020|MT972184.1|20-06-24 17 +England/SHEF-D1CE6/2020|20-04-28 11 +England/SHEF-C0F96/2020|20-04-15 17 +Netherlands/NA_359/2020|LR883961.1|20-04-07 0 +Netherlands/NA_589/2020|LR883868.1|20-04-05 17 +England/ALDP-BCA4B0/2020|20-11-23 0 +England/ALDP-119985B/2021|21-01-27 0 +USA/WI-UW-06/2020|MT772088.1|20-03-21 0 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 0 +USA/WA-S3017/2020|MW474188.1|20-08-15 0 +USA/WA-S2852/2020|MW079820.1|20-09-01 0 +CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 7 +USA/WI-UW-269/2020|MT429191.1|20-04-06 7 +England/CAMB-7A7DF/2020|20-04-02 0 +Netherlands/NA_18/2020|LR878352.1|20-03-09 7 +USA/VA-DCLS-1557/2020|MW208010.1|20-08 0 +USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 0 +USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 0 +USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 0 +USA/CA-QDX-434/2020|MW064457.1|20-03-20 0 +USA/UT-02231/2020|MT444626.1|20-04-15 0 +USA/WA-S2850/2020|MW079819.1|20-09-01 0 +USA/WA-S2746/2020|MT947577.1|20-07-19 0 +USA/WI-UW-879/2020|MT846567.1|20-07-14 5 +USA/UT-05590/2020|MW084605.1|20-06-01 0 +Netherlands/NA_588/2020|LR883860.1|20 0 +Netherlands/NA_583/2020|LR883819.1|20 5 +USA/WA-S2992/2020|MW474166.1|20-08-12 13 +USA/CA-CZB-5698/2020|MW276260.1|20-07-23 13 +USA/GA-CDC-4459/2020|MW130876.1|20-09-11 13 +USA/NY-QDX-1993/2020|MW190794.1|20-03-18 0 +USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 13 +USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 0 +USA/MN-MDH-1583/2020|MT997701.1|20-05-28 0 +USA/MN-MDH-1585/2020|MT997703.1|20-05-22 0 +USA/WI-UW-1126/2020|MT929103.1|20-08-13 0 +USA/WI-UW-1071/2020|MT929023.1|20-07-29 0 +USA/VA-DCLS-0481/2020|MT951936.1|20-05 13 +USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 0 +KOR/YS006/2020|MW345824.1|20-06-04 0 +KOR/YS008/2020|MW345825.1|20-06-07 0 +USA/OR-QDX-3447/2020|MW521776.1|20-08-11 0 +USA/WA-S1037/2020|MT642186.1|20-05-03 0 +USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 0 +USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 0 +USA/MN-QDX-981/2020|MW065078.1|20-03-15 0 +USA/MD-MDH-0164/2020|MT937827.1|20-07-15 0 +USA/VA-DCLS-1006/2020|MT952676.1|20-06 0 +USA/CA-QDX-2685/2020|MW191430.1|20-03-17 0 +USA/MN-QDX-1328/2020|MW065415.1|20-03-15 0 +USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 0 +USA/UT-00495/2020|MT444543.1|20-04-02 0 +USA/UT-00353/2020|MT444564.1|20-03-27 0 +USA/FL-BPHL-1651/2020|MW166116.1|20-07-03 0 +USA/FL-BPHL-2138/2020|MW286694.1|20-06-27 0 +England/CAMB-7771E/2020|20-03-30 0 +England/CAMB-7DC91/2020|20-04-05 0 +USA/VA-DCLS-0426/2020|MT679166.1|20-05 0 +USA/VA-DCLS-0187/2020|MT450889.1|20-04 0 +Scotland/EDB3598/2020|20-04-27 0 +Scotland/EDB2451/2020|20-04-23 0 +USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 0 +USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 0 +USA/CA-CZB-3886/2020|MW134282.1|20-07-21 5 +USA/IL-UW-385/2020|MT772536.1|20-05-23 5 +USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 0 +USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 0 +USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 0 +USA/UT-03041/2020|MW053962.1|20-05-01 0 +USA/MD-MDH-0129/2020|MT937319.1|20-07-08 0 +USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 0 +USA/TX-QDX-261/2020|MT806804.1|20-05-01 4 +USA/NMDOH-2020174703/2020|MW070044.1|20-07-02 0 +USA/WA-S2725/2020|MT947550.1|20-07-07 0 +USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 0 +England/BRIS-128CA3/2020|20-04-14 0 +England/BRIS-12B1CF/2020|20-05-15 0 +USA/WI-UW-491/2020|MT750074.1|20-06-11 0 +USA/WI-UW-522/2020|MT750102.1|20-06-24 0 +USA/WA-QDX-2548/2020|MW191307.1|20-03-16 0 +AUS/VIC1161/2020|MT451779.1|20-04-09 0 +USA/VA-DCLS-1282/2020|MW067700.1|20-08 0 +USA/COVID20-1144/2020|MW067817.1|20-07-10 0 +Wales/PHWC-1662B6/2020|20-06-13 0 +Wales/PHWC-26B12/2020|20-03-29 0 +USA/TX-DSHS-1035/2020|MW228203.1|20-06-15 0 +USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 0 +USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 0 +USA/TX-DSHS-1673/2020|MW406726.1|20-06-24 0 +USA/UT-UPHL-2012691008/2020|MW420625.1|20-08-08 0 +USA/VA-DCLS-1517/2020|MW197475.1|20-07 0 +USA/WI-UW-1268/2020|MW035438.1|20-08-25 0 +USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 0 +Scotland/EDB6146/2020|20-05-14 0 +Scotland/EDB6052/2020|20-05-08 0 +England/CAMB-7FBCF/2020|20-04-16 0 +England/CAMB-784BC/2020|20-04-06 0 +USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 0 +USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 0 +USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 0 +USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 7 +BHR/600023154_S29/2020|MW237743.1|20-10-14 7 +BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 7 +England/PHEC-1C872/2020|20-04-16 0 +England/BRIS-130015/2020|20-04-11 0 +England/CAMC-B533A0/2020|20-11-08 0 +England/MILK-9781E9/2020|20-07-29 0 +321398|LR962930.1|20-10-13 0 +England/QEUH-B8053B/2020|20-11-14 0 +England/CAMC-A3E658/2020|20-10-05 27 +England/MILK-A47DDF/2020|20-10-05 35 +IND/GBRC-366a/2020|MT951170.1|20-06-18 0 +IND/GBRC-392b/2020|MT954593.1|20-07-06 11 +SAU/596/2020|MT755893.1|20-02-18 0 +BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 0 +England/ALDP-EEACDD/2021|21-01-03 13 +England/LIVE-DDCD09/2021|21-01-02 0 +USA/VA-DCLS-0229/2020|MT558657.1|20-04 0 +USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 0 +USA/WA-S1281/2020|MT821642.1|20-05-12 0 +USA/WA-S2367/2020|MT831837.1|20-06-11 9 +USA/VA-DCLS-0804/2020|MT925987.1|20-07 9 +USA/VA-DCLS-1454/2020|MW067779.1|20-08 15 +England/MILK-99DB3B/2020|20-08-31 0 +England/ALDP-5D3DEC/2020|20-06-19 0 +USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 0 +USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 0 +USA/CA-CZB-11521/2020|MW276549.1|20-07-18 3 +USA/CA-CZB-11513/2020|MW276567.1|20-08-02 3 +USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 9 +USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 3 +USA/CA-CZB-3903/2020|MW134295.1|20-07-24 3 +USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 3 +Switzerland/220021/2020|LR882232.1|20-07-27 0 +England/QEUH-96E08F/2020|20-08-18 3 +England/CAMC-B34141/2020|20-11-05 9 +England/MILK-A795AF/2020|20-10-14 9 +USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 0 +USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 0 +England/CAMC-94C02D/2020|20-07-15 0 +England/MILK-95DBDD/2020|20-06-20 0 +Scotland/CVR2213/2020|20-04-11 0 +Scotland/CVR1909/2020|20-04-06 0 +England/PHEC-1555C0/2021|21-01-16 0 +England/MILK-E6578E/2020|20-12-30 0 +England/CAMC-106052A/2021|21-01-16 0 +England/LOND-12F6633/2020|20-12-15 0 +USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 0 +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 0 +USA/WA-S2264/2020|MT831437.1|20-06-09 0 +USA/WA-S1922/2020|MT831459.1|20-06-03 0 +England/CAMB-83FF9/2020|20-04-25 0 +England/CAMB-75895/2020|20-03-18 0 +England/LOND-D6EBE/2020|20-04-03 19 +England/SHEF-C88A2/2020|20-04-21 0 +USA/WA-S860/2020|MT642111.1|20-04-24 0 +USA/MD-MDH-0380/2020|MW292639.1|20-10-27 0 +England/QEUH-A0AFB4/2020|20-10-01 0 +England/ALDP-C48747/2020|20-12-12 0 +Switzerland/230051/2020|LR882355.1|20-08-04 17 +Wales/MILK-9C729D/2020|20-09-12 0 +England/BRIS-12A70A/2020|20-05-01 0 +England/CAMB-77F61/2020|20-04-01 0 +PHL/UPMNIH_C1/2020|MW243995.1|20-07 7 +PHL/COVID-6009/2020|MT919790.1|20-07-18 0 +England/CAMC-94328A/2020|20-07-25 0 +England/CAMC-9424A3/2020|20-07-21 0 +USA/MA-QDX-3180/2021|MW505247.1|21-01-05 0 +USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 0 +USA/VA-DCLS-1485/2020|MW205988.1|20-07 0 +USA/VA-DCLS-1212/2020|MW067767.1|20-06 0 +USA/CA-CZB-11677/2020|MW276577.1|20-08-16 0 +USA/CA-CZB-13945/2020|MW565647.1|20-06-22 0 +England/QEUH-9AE4E1/2020|20-09-01 17 +England/OXON-AEBC7/2020|20-04-12 0 +England/LOND-D4C6B/2020|20-04-15 5 +Wales/PHWC-164485/2020|20-05-02 0 +England/ALDP-5C701F/2020|20-06-19 17 +England/ALDP-51F142/2020|20-06-02 0 +USA/CA-CZB-10287/2020|MW276300.1|20-09-03 8 +USA/CA-CZB-3356/2020|MW134125.1|20-07-14 32 +Northern_Ireland/NIRE-10677D/2020|20-05-14 0 +Northern_Ireland/NIRE-106740/2020|20-05-14 0 +England/MILK-9705F4/2020|20-08-18 0 +England/ALDP-9B6440/2020|20-08-28 0 +England/NORW-EE34B/2020|20-03-24 0 +England/NORW-E8693/2020|20-04-16 0 +Switzerland/250070/2020|LR881870.1|20-08-18 17 +England/QEUH-9B5344/2020|20-09-02 11 +England/ALDP-6839B9/2020|20-07-02 17 +England/ALDP-6BAB59/2020|20-06-29 0 +Scotland/QEUH-96C6AD/2020|20-08-07 14 +Switzerland/270108/2020|LR882077.1|20-09-03 17 +England/ALDP-68EFBC/2020|20-07-02 17 +England/ALDP-91F278/2020|20-06-23 0 +USA/GA-CDC-6435/2020|MT967964.1|20-07-29 0 +USA/WI-UW-1202/2020|MW035373.1|20-08-06 17 +England/LIVE-A2765/2020|20-05-20 0 +England/ALDP-658C87/2020|20-07-03 17 +Northern_Ireland/NIRE-FBB52/2020|20-04-13 17 +Northern_Ireland/NIRE-FAC7E/2020|20-04-15 0 +England/NORT-283BE4/2020|20-04-03 17 +England/CAMB-81070/2020|20-04-20 0 +DK/AD3_Farm1/2020|MT919525.1|20-06-14 0 +DK/KL14_Farm1/2020|MT919536.1|20-06-17 0 +England/BRIS-123EDF/2020|20-04-08 0 +England/BRIS-123F09/2020|20-04-08 0 +EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 0 +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 0 +Scotland/QEUH-7B078B/2020|20-07-19 11 +England/MILK-993EA5/2020|20-08-22 17 +USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 17 +USA/CA-QDX-1599/2020|MW190335.1|20-03-19 11 +England/QEUH-9600C9/2020|20-08-05 0 +England/QEUH-9B92F8/2020|20-09-07 17 +USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 17 +USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 17 +England/CAMB-76490/2020|20-03-30 0 +England/CAMB-7CBD1/2020|20-04-05 0 +Japan/TKYVE11964_2020/2020|LC556322.1|20-04 17 +LC573289.2|20-06 0 +USA/WI-UW-114/2020|MT706234.1|20-03-30 0 +England/CAMB-74D5B/2020|20-03-19 0 +USA/CA-CZB-1871/2020|MT750377.1|20-04-28 17 +USA/CA-CZB-2358/2020|MW036004.1|20-05-13 10 +Wales/PHWC-1645BF/2020|20-05-06 17 +Wales/PHWC-33C88/2020|20-04-17 11 +USA/WA-S2724/2020|MT947562.1|20-07-04 0 +USA/WA-S2728/2020|MT947566.1|20-07-08 0 +England/BRIS-127363/2020|20-04-24 0 +England/BRIS-127A40/2020|20-04-17 0 +Northern_Ireland/NIRE-FB9C1/2020|20-08-13 17 +England/MILK-99DE32/2020|20-08-31 17 +England/QEUH-99923A/2020|20-08-24 0 +England/MILK-825C54/2020|20-07-16 0 +England/BRIS-125D67/2020|20-03-29 0 +England/BRIS-12C841/2020|20-05-12 17 +England/ALDP-95A754/2020|20-06-13 0 +England/ALDP-95CEA8/2020|20-06-15 0 +England/MILK-993300/2020|20-08-26 0 +Wales/PHWC-162751/2020|20-05-27 17 +England/ALDP-497D12/2020|20-06-03 0 +USA/WI-UW-982/2020|MT846668.1|20-07-21 0 +USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 17 +USA/FL-QDX-228/2020|MT806770.1|20-04-18 0 +USA/VA-DCLS-0920/2020|MT929088.1|20-05 0 +England/ALDP-71D072/2020|20-07-01 0 +England/MILK-9573DB/2020|20-06-10 0 +England/QEUH-9B6EAC/2020|20-09-09 11 +England/NORT-2A4CAE/2020|20-09-17 0 +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 17 +Northern_Ireland/NIRE-FB369/2020|20-08-31 0 +England/LEED-2AA4EC/2020|20-04-06 17 +England/LEED-2AA394/2020|20-03-31 0 +England/BRIS-1854318/2020|20-04-28 17 +England/BRIS-12E6FA/2020|20-04-20 22 +Wales/PHWC-16881C/2020|20-04-21 11 +Wales/PHWC-3612C/2020|20-04-28 0 +England/SHEF-C184F/2020|20-08-31 11 +England/ALDP-9D8FFC/2020|20-09-18 17 +England/NORT-28B1EA/2020|20-04-18 0 +England/NORT-28B28D/2020|20-04-18 0 +England/ALDP-5D52BE/2020|20-06-18 17 +England/ALDP-6FAF24/2020|20-06-29 17 +England/MILK-B01F25/2020|20-10-23 15 +Switzerland/210050/2020|LR882268.1|20-07-19 0 +England/ALDP-691499/2020|20-07-02 17 +England/ALDP-4A2BFC/2020|20-05-22 0 +England/ALDP-9B5BC4/2020|20-08-28 17 +England/ALDP-49F5B8/2020|20-05-22 17 +USA/WA-S2573/2020|MT831840.1|20-06-17 0 +USA/WA-S2761/2020|MT947580.1|20-07-29 17 +England/QEUH-A9F5D0/2020|20-10-20 17 +England/QEUH-96AEF2/2020|20-08-15 5 +Netherlands/NA_436/2020|LR883367.1|20-04-07 11 +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 0 +AUS/VIC3114/2020|MT972550.1|20-07-06 0 +AUS/VIC9664/2020|MW156172.1|20-08-12 11 +England/MILK-9C4087/2020|20-09-09 0 +England/QEUH-96F349/2020|20-08-17 17 +England/BIRM-5FC3B/2020|20-05-28 11 +England/PHEC-13ADF/2020|20-03-13 0 +England/ALDP-951E49/2020|20-06-10 17 +England/ALDP-9557A4/2020|20-06-12 0 +USA/CA-CZB-2205/2020|MW035956.1|20-05-27 0 +USA/CA-CZB-2184/2020|MW035923.1|20-05-26 0 +Switzerland/220001/2020|LR882220.1|20-07-24 17 +England/BIRM-6BECD/2020|20-11-17 0 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 0 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 0 +England/ALDP-94A63C/2020|20-06-11 0 +England/ALDP-52A636/2020|20-06-01 0 +ZW-6983|LR963462.1|20-05-01 0 +ZW-6978|LR963455.1|20-05-01 0 +England/ALDP-952A44/2020|20-06-21 0 +England/QEUH-9B4A22/2020|20-09-07 0 +Scotland/CVR3062/2020|20-04-24 0 +Scotland/CVR2435/2020|20-04-14 0 +England/OXON-B0922/2020|20-03-28 0 +AUS/VIC995/2020|MT451680.1|20-03-31 0 +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07 0 +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26 0 +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25 0 +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03 0 +USA/COVID20-0537/2020|MT981422.1|20-06-04 7 +USA/COVID20-1129/2020|MW067826.1|20-07-10 7 +England/CAMB-83FBD/2020|20-04-22 0 +England/CAMB-1AD004/2020|20-04-30 0 +England/ALDP-952A53/2020|20-06-13 0 +England/ALDP-95A745/2020|20-06-13 0 +USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 0 +USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 0 +USA/UT-05592/2020|MW054143.1|20-06-01 0 +USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 0 +USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 21 +USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 0 +USA/UT-02970/2020|MW053933.1|20-05-01 0 +USA/UT-08378/2020|MW206039.1|20-05-26 0 +USA/MD-MDH-0071/2020|MT827237.1|20-05-25 0 +USA/MD-MDH-0066/2020|MT827232.1|20-05-25 0 +England/MILK-9934B2/2020|20-08-26 0 +Switzerland/240029/2020|LR880608.1|20-08-10 0 +USA/OH-UHTL-3/2020|MW585340.1|20-01-05 0 +USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 0 +England/MILK-958598/2020|20-06-09 0 +England/ALDP-4F4092/2020|20-06-24 0 +England/LIVE-A91F7/2020|20-03-25 0 +England/CAMB-1AE865/2020|20-04-30 35 +USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 0 +USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 0 +USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 0 +USA/MA-MGH-03346/2020|MW454682.1|20-11-05 0 +England/ALDP-955F15/2020|20-06-08 0 +England/MILK-9A6856/2020|20-08-31 0 +England/ALDP-94EB75/2020|20-06-17 0 +England/ALDP-6E2806/2020|20-07-01 7 +USA/WA-S4490/2021|MW648014.1|21-01-21 0 +USA/WA-S3458/2020|MW494078.1|20-12-07 0 +England/MILK-5642D2/2020|20-06-10 9 +England/CAMB-1B3593/2020|20-05-26 9 +Switzerland/310517/2020|LR898824.1|20-10-08 0 +England/MILK-9AB1A1/2020|20-08-31 0 +Scotland/QEUH-A9E7BD/2020|20-10-20 0 +Scotland/EDB7778/2020|20-09-16 0 +SAU/578/2020|MT755891.1|20-02-17 0 +Scotland/EDB6640/2020|20-05-28 0 +Scotland/CVR3970/2020|20-08-22 0 +England/MILK-A7D5AB/2020|20-10-13 9 +USA/GA-CDC-5095/2020|MW053297.1|20-06-29 9 +USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 0 +Scotland/EDB6391/2020|20-05-13 0 +Scotland/EDB5108/2020|20-03-31 0 +USA/VA-DCLS-0489/2020|MT951943.1|20-05 0 +USA/VA-DCLS-1388/2020|MW067734.1|20-07 0 +Scotland/QEUH-961BB8/2020|20-08-02 0 +Switzerland/250091/2020|LR881897.1|20-08-19 0 +England/MILK-9750EF/2020|20-08-21 0 +England/MILK-9C3D45/2020|20-09-09 0 +USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 3 +USA/MN-MDH-2008/2020|MW279332.1|20-09-29 0 +USA/MD-MDH-0853/2021|MW621444.1|21-01-20 0 +England/PHEC-14F392/2020|20-12-24 0 +Netherlands/Friesland_9/2020|LR878060.1|20-03-30 0 +Netherlands/Friesland_6/2020|LR878056.1|20-03-28 0 +England/CAMB-737D6/2020|20-03-31 0 +England/CAMB-1B08D9/2020|20-05-04 0 +IND/GBRC238b/2020|MT676367.1|20-06-12 23 +IND/GBRC209a/2020|MT664202.1|20-06-11 0 +Wales/PHWC-360A7/2020|20-04-29 0 +Wales/PHWC-260AA/2020|20-03-24 0 +USA/WA-S2012/2020|MT831128.1|20-06-04 16 +USA/WA-S1775/2020|MT834200.1|20-06-01 0 +USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 0 +USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 0 +England/ALDP-651C9D/2020|20-07-04 17 +Scotland/CVR3919/2020|20-06-21 0 +England/QEUH-96E27A/2020|20-08-20 8 +England/MILK-74C001/2020|20-06-29 11 +England/ALDP-955FAC/2020|20-06-08 0 +England/ALDP-49E391/2020|20-05-20 0 +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 0 +USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 0 +USA/FL-CDC-21490280/2021|MW667214.1|21-01-27 0 +USA/NY-CDC-21712201/2021|MW668883.1|21-02-04 0 +England/QEUH-9DE381/2020|20-09-21 0 +England/QEUH-95E7D8/2020|20-08-06 17 +England/NOTT-111E3E/2020|20-06-10 11 +England/NOTT-111117/2020|20-05-03 0 +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 0 +Scotland/CVR41/2020|20-03-13 0 +England/ALDP-9ECEAD/2020|20-05-05 0 +England/BRIS-12DC53/2020|20-05-02 0 +England/ALDP-A525BB/2020|20-10-07 0 +ISR/NH_M2_0614/2020|MW194121.1|20-06-14 17 +England/MILK-A45AF8/2020|20-10-06 17 +Scotland/QEUH-A613BF/2020|20-10-13 0 +Switzerland/180039/2020|LR861669.1|20-07-01 0 +Switzerland/220022/2020|LR882244.1|20-07-27 0 +England/NORW-E8709/2020|20-04-18 11 +UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 17 +England/MILK-A18C8F/2020|20-10-03 0 +England/ALDP-C3C1FD/2020|20-12-10 0 +Wales/PHWC-15E0B7/2020|20-05-13 0 +Wales/PHWC-30957/2020|20-04-08 0 +TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 0 +TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 0 +USA/CA-CZB-4049/2020|MW134382.1|20-08-21 11 +USA/CA-CZB-3294/2020|MW134115.1|20-07-20 0 +England/MILK-ABBCCA/2020|20-10-21 17 +England/MILK-ACCF27/2020|20-10-21 17 +England/ALDP-907D09/2020|20-06-22 0 +England/MILK-85E3E4/2020|20-07-18 0 +Wales/PHWC-16578B/2020|20-06-07 0 +Wales/PHWC-166104/2020|20-05-15 17 +England/ALDP-94D8F7/2020|20-06-20 0 +England/NOTT-111BFB/2020|20-05-29 0 +England/PORT-2F5752/2020|20-10-13 0 +England/QEUH-96A4C3/2020|20-08-13 0 +USA/VA-DCLS-1073/2020|MT981458.1|20-06 11 +USA/VA-DCLS-0120/2020|MT482111.1|20-04 0 +England/ALDP-9D9104/2020|20-09-18 17 +England/CAMC-A40F67/2020|20-10-06 0 +England/WSFT-25C13CB/2020|20-04-17 0 +England/PORT-2F5D9C/2020|20-06-05 0 +ITA/APU-POLBA09/2020|MW485806.1|20-08-26 0 +DV_IZSPB_236_S50|LR992121.1|20-08-29 0 +England/MILK-62FD59/2020|20-07-05 0 +England/ALDP-90DDC7/2020|20-06-26 0 +USA/IL-UW-1082/2020|MT929034.1|20-07-27 0 +USA/FL-BPHL-1773/2020|MW206588.1|20-07-29 17 +USA/WA-S2598/2020|MT831859.1|20-06-18 11 +USA/WA-S1840/2020|MT834024.1|20-05-27 19 +USA/WA-S1246/2020|MT821587.1|20-05-11 18 +USA/WA-S820/2020|MT641503.1|20-04-15 0 +England/CAMB-80B43/2020|20-04-11 0 +England/CAMB-7666D/2020|20-03-29 0 +AUS/VIC13094/2020|MW185501.1|20-07-31 0 +AUS/VIC9179/2020|MW153248.1|20-08-21 0 +AUS/VIC11646/2020|MW155572.1|20-07-22 0 +England/CAMC-947259/2020|20-07-21 0 +England/MILK-9927C9/2020|20-08-27 0 +England/CAMB-1AA438/2020|20-04-17 0 +England/CAMB-1AFB7A/2020|20-05-02 0 +England/NORT-282796/2020|20-03-28 0 +England/NORT-2839AE/2020|20-04-01 11 +England/QEUH-96E025/2020|20-08-18 0 +Scotland/QEUH-94375E/2020|20-08-02 0 +USA/CA-CZB-4099/2020|MW134393.1|20-08-15 0 +USA/UT-UPHL-2009621/2020|MW206324.1|20-07-18 0 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 17 +England/MILK-1169960/2021|21-01-25 11 +USA/WA-S4100/2021|MW555971.1|21-01-18 0 +USA/WA-S4074/2021|MW555949.1|21-01-19 0 +England/ALDP-CB55B4/2020|20-12-20 0 +England/CAMC-CF4B5D/2020|20-12-21 0 +Wales/PHWC-340A9/2020|20-04-20 0 +Wales/PHWC-1667A8/2020|20-05-26 0 +England/PHEC-14F5D8/2020|20-12-29 0 +Scotland/EDB11343/2020|20-12-26 0 +England/LIVE-DAB556/2020|20-10-18 21 +England/PHEC-14DE93/2020|20-11-11 0 +USA/COVID20-0777/2020|MW002812.1|20-06-26 0 +USA/VA-DCLS-1147/2020|MT992749.1|20-04 0 +USA/VA-DCLS-1512/2020|MW197472.1|20-07 13 +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 0 +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 0 +ARG/Cordoba-891/2020|MW633900.1|20-09-14 0 +USA/CA-CZB-5668/2020|MW276489.1|20-08-08 0 +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 0 +USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 0 +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 0 +USA/NC-QDX-174/2020|MT786825.1|20-04-27 0 +USA/1453xE2/2020|MW521402.1|20-07-05 0 +USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 0 +USA/WA-S2867/2020|MW173410.1|20-09-20 0 +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 13 +England/CAMC-947D3A/2020|20-07-17 0 +USA/IL-UW-1064/2020|MT929016.1|20-07-26 0 +USA/VA-DCLS-1666/2020|MW280480.1|20-08 37 +England/RAND-12B3F28/2021|21-02-09 0 +England/RAND-12B3CF4/2021|21-02-09 0 +USA/MA-MGH-02814/2020|MW454549.1|20-09-24 0 +USA/MA-MGH-03386/2020|MW454697.1|20-11-09 0 +USA/CA-CZB-10856/2020|MW276376.1|20-07-28 7 +USA/WI-UW-994/2020|MT846680.1|20-07-20 0 +England/BRIS-12C762/2020|20-05-13 0 +England/BRIS-127AD7/2020|20-04-16 0 +England/BRIS-12D9F2/2020|20-05-06 0 +England/BRIS-12B156/2020|20-05-08 0 +England/ALDP-B75065/2020|20-11-12 11 +Scotland/QEUH-AD4AFE/2020|20-10-27 11 +BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 0 +BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 0 +England/MILK-EB78C6/2021|21-01-02 0 +England/CAMC-C44338/2020|20-12-10 13 +USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 0 +USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 0 +Switzerland/300264/2020|LR898541.1|20-10-01 0 +England/QEUH-963433/2020|20-08-10 0 +England/MILK-ACC08E/2020|20-10-21 11 +Scotland/QEUH-9696CE/2020|20-08-14 0 +England/MILK-BB0022/2020|20-11-18 0 +England/ALDP-A6CC8C/2020|20-10-14 15 +Northern_Ireland/NIRE-FB967/2020|20-08-17 0 +England/QEUH-7A4BBB/2020|20-07-14 0 +England/BRIS-185470D/2020|20-05-01 0 +England/BRIS-12AF02/2020|20-05-01 0 +England/ALDP-9558ED/2020|20-06-12 0 +England/NORT-286255/2020|20-09-16 0 +Switzerland/250060/2020|LR881882.1|20-08-18 0 +England/QEUH-A77F0D/2020|20-10-12 0 +England/LOND-126DFA5/2020|20-12-27 11 +Wales/PHWC-4846A4/2020|20-10-24 15 +England/QEUH-AD487C/2020|20-10-26 0 +England/QEUH-9B7B2C/2020|20-09-03 0 +England/CAMB-72B44/2020|20-03-22 0 +England/CAMB-822D3/2020|20-04-12 0 +Japan/TKYE627000_2020/2020|LC593811.1|20-08 0 +Japan/TKYE624705_2020/2020|LC593810.1|20-07 0 +England/QEUH-9F9265/2020|20-09-26 0 +England/QEUH-98EE43/2020|20-08-25 0 +IND/GBRC455b/2020|MW600453.1|20-12-24 0 +IND/GBRC455a/2020|MW600436.1|20-12-24 0 +USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 0 +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 0 +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 0 +CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 0 +ARG/Cordoba-2858/2020|MW633904.1|20-09-14 0 +ARG/Cordoba-1484/2020|MW633909.1|20-09-17 0 +England/MILK-95862C/2020|20-06-11 17 +England/ALDP-94EF88/2020|20-06-16 0 +Scotland/QEUH-A00DF0/2020|20-10-02 11 +England/ALDP-9CC5BD/2020|20-09-15 17 +England/ALDP-9BEB16/2020|20-09-09 0 +England/ALDP-A95376/2020|20-10-19 0 +England/QEUH-B10460/2020|20-11-02 8 +Scotland/QEUH-96D5CD/2020|20-08-20 0 +England/CAMB-1AE7FF/2020|20-04-29 0 +England/CAMB-762D2/2020|20-03-28 17 +USA/WA-S1222/2020|MT821613.1|20-05-08 0 +USA/WA-S1655/2020|MT834136.1|20-05-29 26 +England/MILK-BB0F16/2020|20-11-17 0 +England/CAMC-BBDD4C/2020|20-11-22 0 +Scotland/EDB11342/2020|20-12-26 0 +England/QEUH-CAF17D/2020|20-12-15 0 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 0 +USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 0 +Scotland/QEUH-969725/2020|20-08-14 0 +England/QEUH-AD1648/2020|20-10-26 0 +England/MILK-A192C8/2020|20-10-01 0 +England/QEUH-9F3FDD/2020|20-09-24 0 +England/CAMC-1263B05/2021|21-02-10 0 +England/QEUH-AD3822/2020|20-10-26 0 +England/MILK-9A94E6/2020|20-09-01 0 +England/MILK-566C5A/2020|20-06-12 0 +England/CAMC-C2CDFC/2020|20-12-07 0 +England/MILK-CAA0EE/2020|20-12-18 0 +England/TFCI-26FA9B7/2020|20-12-31 0 +England/MILK-B94ACC/2020|20-11-13 0 +England/QEUH-96A29C/2020|20-08-13 0 +England/ALDP-9EA6D4/2020|20-09-24 0 +England/MILK-A6AEC4/2020|20-10-09 0 +England/MILK-B889A0/2020|20-11-14 0 +England/MILK-ACEE55/2020|20-10-21 0 +Switzerland/260079/2020|LR882418.1|20-08-25 0 +USA/WI-UW-1288/2020|MW035458.1|20-09-02 0 +USA/WA-S2808/2020|MW077495.1|20-08-31 0 +England/CAMC-B3582D/2020|20-11-05 0 +England/MILK-A796E8/2020|20-10-14 0 +England/MILK-BB0031/2020|20-11-18 0 +Scotland/QEUH-96B4E0/2020|20-08-17 0 +England/PHEC-152C73/2020|20-11-16 0 +England/MILK-9AA782/2020|20-08-31 0 +England/ALDP-B82A0D/2020|20-11-14 0 +USA/MD-MDH-0664/2021|MW524034.1|21-01-04 0 +England/MILK-A79D10/2020|20-10-15 12 +England/PHEC-148F95/2020|20-10-15 0 +England/MILK-A180DE/2020|20-10-01 0 +England/NORW-222D0F/2020|20-12-20 0 +England/MILK-F72F49/2021|21-01-05 0 +England/ALDP-94DD07/2020|20-06-19 0 +England/ALDP-49EC3C/2020|20-05-20 0 +PER/covper024/2020|MW030255.1|20-07-04 0 +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 0 +PER/covper011/2020|MW030242.1|20-07-04 30 +PER/covper040/2020|MW030271.1|20-05-05 0 +England/MILK-B1553B/2020|20-10-23 0 +England/MILK-66F889/2020|20-07-03 11 +England/QEUH-96BAA2/2020|20-08-14 0 +Wales/ALDP-B19FFD/2020|20-11-01 0 +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 0 +PER/covper018/2020|MW030249.1|20-07-03 17 +England/CAMC-C3E586/2020|20-12-10 0 +England/CAMC-DE5550/2020|20-12-29 0 +Japan/TKYE630414_2020/2020|LC593818.1|20-08 11