Mercurial > repos > iuc > usher_matutils
changeset 2:e0a0a473fc1e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit 5de7b91f2bda9c351f9512601f899248b7278924
| author | iuc |
|---|---|
| date | Sun, 17 Mar 2024 18:10:36 +0000 |
| parents | 52fd1d491417 |
| children | |
| files | macros.xml matutils.xml |
| diffstat | 2 files changed, 6 insertions(+), 9 deletions(-) [+] |
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--- a/macros.xml Sun Dec 19 15:52:45 2021 +0000 +++ b/macros.xml Sun Mar 17 18:10:36 2024 +0000 @@ -1,13 +1,10 @@ <macros> <token name="@TOOL_VERSION@">0.2.1</token> <token name="@GALAXY_TOOL_VERSION@">galaxy0</token> - <xml name="edam_ontology"> - <edam_topics> - <edam_topic>topic_0194</edam_topic> - </edam_topics> - <edam_operations> - <edam_operation>operation_0540</edam_operation> - </edam_operations> + <xml name="xrefs"> + <xrefs> + <xref type="bio.tools">usher</xref> + </xrefs> </xml> <xml name="requirements"> <requirements>
--- a/matutils.xml Sun Dec 19 15:52:45 2021 +0000 +++ b/matutils.xml Sun Mar 17 18:10:36 2024 +0000 @@ -3,7 +3,7 @@ <macros> <import>macros.xml</import> </macros> - <expand macro='edam_ontology' /> + <expand macro="xrefs"/> <expand macro='requirements' /> <version_command>usher --version</version_command> <command detect_errors='exit_code'><![CDATA[ @@ -281,7 +281,7 @@ <data name="aberrant_stats" format="tabular" from_work_dir='aberrant_stats.tabular' label="${tool.name} on ${on_string}: aberrant stats"> <filter>matutils_mode['options_mode'] == 'summary' and 'aberrant' in matutils_mode['summary_options']</filter> </data> - <data name="output_mat" format="protobuf3" from_work_dir='output_mat.pb' label="${tool.name} on ${on_string}: mutation annotated tree"> + <data name="output_mat" format="protobuf3" from_work_dir='output_mat.pb' label="${tool.name} on ${on_string}: mutation tree"> <filter>matutils_mode['options_mode'] == 'annotate' or matutils_mode['options_mode'] == 'mask'</filter> </data> <data name="total_parsimony_tree" format="txt" from_work_dir='output_stdout.txt' label="${tool.name} on ${on_string}: parsimony tree">