Mercurial > repos > iuc > vardict_java
annotate test-data/passed_variants_paired.vcf @ 3:e0734e88a104 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 80e3742f499e8efabad1fe7627201466d0bdd190"
| author | iuc |
|---|---|
| date | Thu, 27 Jan 2022 15:19:23 +0000 |
| parents | d262577e04b0 |
| children |
| rev | line source |
|---|---|
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2
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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changeset
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1 ##fileformat=VCFv4\.2 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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2 ##source=VarDict_v\d\.[.0-9]+ |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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3 ##INFO=<ID=SAMPLE,Number=1,Type=String,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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4 ##INFO=<ID=TYPE,Number=1,Type=String,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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6 ##INFO=<ID=END,Number=1,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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7 ##INFO=<ID=VD,Number=1,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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8 ##INFO=<ID=AF,Number=A,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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9 ##INFO=<ID=SHIFT3,Number=1,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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10 ##INFO=<ID=MSI,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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11 ##INFO=<ID=MSILEN,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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12 ##INFO=<ID=SSF,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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13 ##INFO=<ID=SOR,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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14 ##INFO=<ID=LSEQ,Number=1,Type=String,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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15 ##INFO=<ID=RSEQ,Number=1,Type=String,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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16 ##INFO=<ID=STATUS,Number=1,Type=String,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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17 ##INFO=<ID=P0\.01Likely,Number=0,Type=Flag,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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18 ##INFO=<ID=InDelLikely,Number=0,Type=Flag,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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19 ##FILTER=<ID=q22\.5,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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20 ##FILTER=<ID=Q0,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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21 ##FILTER=<ID=p8,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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22 ##FILTER=<ID=SN1\.5,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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23 ##FILTER=<ID=Bias,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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24 ##FILTER=<ID=pSTD,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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25 ##FILTER=<ID=MAF0\.05,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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26 ##FILTER=<ID=d5,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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27 ##FILTER=<ID=v3,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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28 ##FILTER=<ID=f0\.01,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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29 ##FILTER=<ID=P0\.05,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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30 ##FILTER=<ID=DIFF0\.2,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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31 ##FILTER=<ID=MSI12,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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32 ##FILTER=<ID=NM5\.25,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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33 ##FILTER=<ID=InGap,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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34 ##FILTER=<ID=InIns,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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35 ##FILTER=<ID=Cluster0bp,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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36 ##FILTER=<ID=LongAT,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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37 ##FORMAT=<ID=GT,Number=1,Type=String,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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38 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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39 ##FORMAT=<ID=VD,Number=1,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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40 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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41 ##FORMAT=<ID=ALD,Number=2,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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42 ##FORMAT=<ID=RD,Number=2,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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43 ##FORMAT=<ID=AF,Number=A,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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44 ##FORMAT=<ID=ADJAF,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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45 ##FORMAT=<ID=BIAS,Number=2,Type=String,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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46 ##FORMAT=<ID=PMEAN,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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47 ##FORMAT=<ID=PSTD,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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48 ##FORMAT=<ID=QUAL,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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49 ##FORMAT=<ID=QSTD,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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50 ##FORMAT=<ID=SBF,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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51 ##FORMAT=<ID=ODDRATIO,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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52 ##FORMAT=<ID=MQ,Number=1,Type=Integer,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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53 ##FORMAT=<ID=SN,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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54 ##FORMAT=<ID=HIAF,Number=1,Type=Float,Description="[^"]+"> |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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55 ##FORMAT=<ID=NM,Number=1,Type=Float,Description="[^"]+"> |
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0
2975b29bcaa1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 8a561c35737f2bdef39842ce7f297a286380bf36"
iuc
parents:
diff
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56 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Tumor Normal |
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2
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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57 chrM 150 \. T C 121 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=2;VD=2;AF=1;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=GTCTTTGATTCCTGCCTCAT;RSEQ=CTATTATTTATCGCACCTAC GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:2:2:0,2:0,0:0,2:1:0,0:35:1:40.5:1:1:0:60:4:1:0:1.5 1/1:9:9:4,5:0,0:0,9:1:0,2:29.8:1:38.4:1:1:0:60:18:1:0.1111:1.8 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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58 chrM 195 \. C T 120 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=1;VD=1;AF=1;SHIFT3=2;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=AATATTACAGGCGAACATAC;RSEQ=TACTAAAGTGTGTTAATTAA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:1:1:0,1:0,0:0,1:1:0,0:22:0:40:0:1:0:60:2:1:0:2 1/1:9:9:3,6:0,0:0,9:1:0,2:21.9:1:37.9:1:1:0:60:18:1:0:1.8 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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59 chrM 302 \. AC A 85 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=Deletion;DP=0;VD=0;AF=0;SHIFT3=7;MSI=8.000;MSILEN=1;SSF=1;SOR=0;LSEQ=TAACAAAAAATTTCCACCAA;RSEQ=CCCCCCCTCCCCCCGCTTCT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:6:5:5,0:1,0:1,5:0.8333:0,0:15.2:1:36.8:1:1:0:60:10:0.8333:0.5:1.6 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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60 chrM 410 \. A T 149 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=3;VD=3;AF=1;SHIFT3=0;MSI=2.000;MSILEN=1;SSF=1;SOR=0;LSEQ=AGATTTCAAATTTTATCTTT;RSEQ=GGCGGTATGCACTTTTAACA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:3:3:3,0:0,0:0,3:1:0,0:23.3:1:36.7:1:1:0:60:6:1:0.3333:2.3 1/1:18:18:12,6:0,0:0,18:1:0,2:19.7:1:35.9:1:1:0:60:17:1:0.0556:1.9 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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changeset
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61 chrM 464 \. C T 193 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=8;VD=8;AF=1;SHIFT3=2;MSI=3.000;MSILEN=1;SSF=0.85965;SOR=0;LSEQ=TAACACATTATTTTCCCCTC;RSEQ=CACTCCCATACTACTAATCT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:8:8:6,2:0,0:0,8:1:0,2:22.8:1:36.2:1:1:0:60:16:1:0:2.1 1/1:49:48:37,11:1,0:1,48:0.9796:0,2:24.9:1:34.6:1:1:0:60:15:0.9783:0.0408:2.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
62 chrM 491 \. T C 228 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=10;VD=10;AF=1;SHIFT3=1;MSI=1.000;MSILEN=1;SSF=0.89474;SOR=0;LSEQ=CATACTACTAATCTCATCAA;RSEQ=ACAACCCCCGCCCATCCTAC GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:10:10:8,2:0,0:0,10:1:0,2:28.3:1:38.3:1:1:0:60:20:1:0:1.7 1/1:85:84:65,19:1,0:1,84:0.9882:0,2:21:1:35.7:1:1:0:60:27:0.9878:0.0824:1.7 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
63 chrM 1735 \. C T 140 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=3;VD=3;AF=1;SHIFT3=0;MSI=3.000;MSILEN=1;SSF=1;SOR=0;LSEQ=ACCTTAGCCAAACCATTTAC;RSEQ=CAAATAAAGTATAGGCGATA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:3:3:1,2:0,0:0,3:1:0,2:46.7:1:40.3:1:1:0:60:6:1:0:1 1/1:14:14:6,8:0,0:0,14:1:0,2:26:1:37:1:1:0:60:28:1:0:1.1 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
64 chrM 2354 \. C T 135 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=3;VD=3;AF=1;SHIFT3=0;MSI=4.000;MSILEN=1;SSF=1;SOR=0;LSEQ=CGCATAAGCCTGCGTCAGAT;RSEQ=AAAACACTGAACTGACAATT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:3:3:2,1:0,0:0,3:1:0,2:18.3:1:36.5:1:1:0:60:6:1:0.3333:1 1/1:11:11:8,3:0,0:0,11:1:0,2:23.1:1:39.1:1:1:0:60:22:1:0.0909:1.3 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
65 chrM 2485 \. C T 123 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=3;VD=3;AF=1;SHIFT3=0;MSI=2.000;MSILEN=1;SSF=1;SOR=0;LSEQ=AGTAAAAGGAACTCGGCAAA;RSEQ=CTTACCCCGCCTGTTTACCA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:3:3:2,1:0,0:0,3:1:0,2:17.7:1:37.7:1:1:0:53:6:1:0:1 1/1:13:13:8,5:0,0:0,13:1:0,2:29.4:1:33.5:1:1:0:40:5.5:1:0:1.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
66 chrM 3012 \. G A 99 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=1;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=ATGTTGGATCAGGACATCCC;RSEQ=ATGGTGCAGCCGCTATTAAA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:6:6:1,5:0,0:0,6:1:0,2:36.7:1:38.5:1:1:0:58:12:1:0:1.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
67 chrM 5581 \. C T 133 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=0;MSI=2.000;MSILEN=1;SSF=1;SOR=0;LSEQ=GTTGCAATACTTAATTTCTG;RSEQ=AACAGCTAAGGACTGCAAAA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:12:12:2,10:0,0:0,12:1:0,2:24.8:1:37.3:1:1:0:34:24:1:0.0833:1 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
68 chrM 8702 \. G A 126 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=2;VD=2;AF=1;SHIFT3=1;MSI=2.000;MSILEN=1;SSF=1;SOR=0;LSEQ=TAACCTCAAAACAAATGATA;RSEQ=CCATACACAACACTAAAGGA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:2:2:1,1:0,0:0,2:1:0,2:46:1:34:1:1:0:60:4:1:0:1.5 1/1:11:11:6,5:0,0:0,11:1:0,2:25.2:1:36.7:1:1:0:51:22:1:0:1 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
69 chrM 9378 \. G A 110 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=3;VD=3;AF=1;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=ACACTAACCATATACCAATG;RSEQ=TGGCGCGATGTAACACGAGA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:3:3:0,3:0,0:0,3:1:0,0:20.3:1:36:1:1:0:46:6:1:0:1 1/1:9:9:4,5:0,0:0,9:1:0,2:19.7:1:34.9:1:1:0:44:8:1:0.1111:1.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
70 chrM 11018 \. C T 84 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=2;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=AGCCAACGCCACTTATCCAG;RSEQ=GAACCACTATCACGAAAAAA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:5:5:2,3:0,0:0,5:1:0,2:29.6:1:36.4:1:1:0:51:10:1:0:1.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
71 chrM 11252 \. A G 150 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=5;VD=5;AF=1;SHIFT3=0;MSI=2.000;MSILEN=1;SSF=1;SOR=0;LSEQ=CTTCCCCTACTCATCGCACT;RSEQ=ATTTACACTCACAACACCCT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:5:5:1,4:0,0:0,5:1:0,2:26.2:1:37.4:1:1:0:60:10:1:0.2:1.2 1/1:17:17:9,8:0,0:0,17:1:0,2:27.8:1:36.9:1:1:0:60:34:1:0.0588:1.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
72 chrM 11464 \. T A 32 PASS STATUS=StrongSomatic;SAMPLE=Tumor;TYPE=SNV;DP=6;VD=2;AF=0.3333;SHIFT3=1;MSI=1.000;MSILEN=1;SSF=0.125;SOR=0;LSEQ=AATAGTACTTGCCGCAGTAC;RSEQ=CTTAAAACTAGGCGGCTATG GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/1:6:2:1,1:2,2:4,2:0.3333:2,2:25.5:1:32:1:1:1:60:4:0.3333:0:1 0/0:10:0:0,0:6,4:10,0:0:2,0:24.9:1:37:1:1:0:60:20:1:0:0.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
73 chrM 11723 \. C T 144 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=1;MSI=2.000;MSILEN=2;SSF=1;SOR=0;LSEQ=CTCATAATCGCCCACGGACT;RSEQ=ACATCCTCATTACTATTCTG GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:16:16:8,8:0,0:0,16:1:0,2:30.1:1:36.2:1:1:0:50:32:1:0:1 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
74 chrM 12613 \. A G 106 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=TCCATAATATTCATCCCTGT;RSEQ=GCATTGTTCGTTACATGGTC GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:7:7:2,5:0,0:0,7:1:0,2:17.9:1:37.9:1:1:0:60:14:1:0:1.3 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
75 chrM 12706 \. T C 97 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=1;VD=1;AF=1;SHIFT3=0;MSI=4.000;MSILEN=1;SSF=1;SOR=0;LSEQ=TTCTTCAAATATCTACTCAT;RSEQ=TTCCTAATTACCATACTAAT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:1:1:1,0:0,0:0,1:1:0,0:39:0:40:0:1:0:60:2:1:0:1 1/1:6:6:4,2:0,0:0,6:1:0,2:28.7:1:37.7:1:1:0:60:12:1:0:1.3 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
76 chrM 12851 \. G A 141 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=4;VD=4;AF=1;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=ACACAGCAGCCATTCAAGCA;RSEQ=TCCTATACAACCGTATCGGC GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:4:4:2,2:0,0:0,4:1:0,2:22.5:1:36.5:1:1:0:60:8:1:0:1 1/1:14:14:7,7:0,0:0,14:1:0,2:26.2:1:37.2:1:1:0:60:28:1:0:1.1 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
77 chrM 13709 \. G A 103 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=2;VD=2;AF=1;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=TAAACCCCATTAAACGCCTG;RSEQ=CAGCCGGAAGCCTATTCGCA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:2:2:1,1:0,0:0,2:1:0,2:14.5:1:32:1:1:0:60:4:1:0:1 1/1:7:7:3,4:0,0:0,7:1:0,2:22.3:1:36.7:1:1:0:60:14:1:0:1 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
78 chrM 14213 \. C T 130 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=AACAATGTTCAACCAGTAAC;RSEQ=ACTACTAATCAACGCCCATA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:11:11:5,6:0,0:0,11:1:0,2:25.2:1:37.7:1:1:0:58:22:1:0:1.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
79 chrM 14581 \. G A 141 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=5;VD=5;AF=1;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=GACCACACCGCTAACAATCA;RSEQ=TACTAAACCCCCATAAATAG GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:5:5:3,2:0,0:0,5:1:0,2:24.8:1:37.4:1:1:0:44:10:1:0:1 1/1:15:15:9,6:0,0:0,15:1:0,2:31.5:1:36.1:1:1:0:56:14:1:0.0667:1 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
80 chrM 14794 \. A G 37 PASS STATUS=StrongSomatic;SAMPLE=Tumor;TYPE=SNV;DP=6;VD=2;AF=0.3333;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=0.06494;SOR=0;LSEQ=CCTAATAAAATTAATTAACC;RSEQ=CTCATTCATCGACCTCCCCA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/1:6:2:1,1:2,2:4,2:0.3333:2,2:23:1:37:1:1:1:60:4:0.3333:0.1667:1 0/0:16:0:0,0:6,10:16,0:0:2,0:22.6:1:30.3:1:1:0:60:15:1:0:0 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
81 chrM 14906 \. A G 177 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=9;VD=9;AF=1;SHIFT3=0;MSI=2.000;MSILEN=2;SSF=1;SOR=0;LSEQ=ACAGGACTATTCCTAGCCAT;RSEQ=CACTACTCACCAGACGCCTC GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:9:9:5,4:0,0:0,9:1:0,2:28.8:1:34.1:1:1:0:60:8:1:0.1111:2.1 1/1:33:33:15,18:0,0:0,33:1:0,2:22.5:1:35.2:1:1:0:60:66:1:0.0606:1.8 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
82 chrM 14928 \. A G 181 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=9;VD=9;AF=1;SHIFT3=1;MSI=2.000;MSILEN=1;SSF=0.8;SOR=0;LSEQ=ACTACTCACCAGACGCCTCA;RSEQ=CCGCCTTTTCATCAATCGCC GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:9:9:5,4:0,0:0,9:1:0,2:30:1:38.8:1:1:0:60:18:1:0:2.1 1/1:36:35:16,19:0,1:1,35:0.9722:0,2:20.1:1:35.3:1:1:0:60:16.5:0.9706:0.0833:1.8 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
83 chrM 15302 \. A G 128 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=2;VD=2;AF=1;SHIFT3=1;MSI=3.000;MSILEN=1;SSF=1;SOR=0;LSEQ=TTTACCTTTCACTTCATCTT;RSEQ=CCCTTCATTATTGCAGCCCT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:2:2:1,1:0,0:0,2:1:0,2:26.5:1:38:1:1:0:60:4:1:0:1 1/1:11:11:4,7:0,0:0,11:1:0,2:31.2:1:37.1:1:1:0:60:22:1:0:1.2 |
|
d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
|
84 chrM 15453 \. C A 83 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=0;MSI=2.000;MSILEN=1;SSF=1;SOR=0;LSEQ=CCCTCGGCTTACTTCTCTTC;RSEQ=TTCTCTCCTTAATGACATTA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:6:6:3,3:0,0:0,6:1:0,2:22.7:1:32.2:1:1:0:60:12:1:0:1 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
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85 chrM 16070 \. C T 107 PASS STATUS=Deletion;SAMPLE=Tumor;TYPE=SNV;DP=0;VD=0;AF=0;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=GTACCACCCAAGTATTGACT;RSEQ=ACCCATCAACAACCGCTATG GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 0/0:0:0:0,0:0,0:0,0:0:0,0:0:0:0:0:1:0:0:0:0:0:0 1/1:7:7:4,3:0,0:0,7:1:0,2:27.4:1:38.4:1:1:0:60:14:1:0:1.7 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
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86 chrM 16127 \. T C 85 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=1;VD=1;AF=1;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=GCCAGCCACCATGAATATTG;RSEQ=ACGGTACCATAAATACTTGA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:1:1:1,0:0,0:0,1:1:0,0:15:0:41:0:1:0:60:2:1:0:5 1/1:5:5:4,1:0,0:0,5:1:0,2:24.2:1:36.7:1:1:0:60:10:1:0.4:4.2 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
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87 chrM 16146 \. G A 106 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=1;VD=1;AF=1;SHIFT3=1;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=GTACGGTACCATAAATACTT;RSEQ=ACCACCTGTAGTACATAAAA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:1:1:1,0:0,0:0,1:1:0,0:34:0:41:0:1:0:60:2:1:0:5 1/1:8:8:6,2:0,0:0,8:1:0,2:15.6:1:35.4:1:1:0:60:7:1:0.25:4.9 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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88 chrM 16184 \. CC A 121 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=Complex;DP=2;VD=1;AF=0.5;SHIFT3=11;MSI=12.000;MSILEN=1;SSF=0.42308;SOR=0.2582;LSEQ=AAAACCCAACCCACATCAAA;RSEQ=CCCCCCCCCCATGCTTACAA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/0:2:1:1,0:0,0:0,1:0.5:0,0:27:0:39:0:1:0:60:2:1:0:4 1/1:11:9:7,2:0,0:0,9:0.8182:0,2:28.2:1:38.2:1:1:0:60:18:0.9:0.1818:4.6 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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89 chrM 16191 \. C T 124 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=2;VD=2;AF=1;SHIFT3=0;MSI=12.000;MSILEN=1;SSF=1;SOR=0;LSEQ=AACCCACATCAAACCCCCCC;RSEQ=CCCCATGCTTACAAGCAAGT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:2:2:1,1:0,0:0,2:1:0,2:22:1:33.5:1:1:0:60:4:1:0:5.5 1/1:12:12:7,5:0,0:0,12:1:0,2:29.6:1:34.7:1:1:0:60:11:1:0.0833:5.2 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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90 chrM 16224 \. CT TC 159 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=Complex;DP=2;VD=1;AF=0.5;SHIFT3=0;MSI=2.000;MSILEN=1;SSF=0.24901;SOR=0.12566;LSEQ=AAGCAAGTACAGCAATCAAC;RSEQ=TCAACTATCACACATCAACT GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/0:2:1:0,1:0,0:0,1:0.5:0,0:42:0:38:0:1:0:60:2:0.5:0:5 1/1:21:19:9,10:0,0:0,19:0.9048:0,2:26.4:1:37.6:1:1:0:60:38:1:0.0952:3.2 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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91 chrM 16263 \. C T 158 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=4;VD=4;AF=1;SHIFT3=4;MSI=4.000;MSILEN=1;SSF=1;SOR=0;LSEQ=ACTGCAACTCCAAAGCCACC;RSEQ=CTCACCCACTAGGATACCAA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:4:4:2,2:0,0:0,4:1:0,2:25.8:1:34.2:1:1:0:60:3:1:0:3 1/1:18:18:9,9:0,0:0,18:1:0,2:26.9:1:38:1:1:0:60:36:1:0.0556:2.5 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
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changeset
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92 chrM 16322 \. T C 125 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=2;VD=2;AF=1;SHIFT3=0;MSI=1.000;MSILEN=1;SSF=1;SOR=0;LSEQ=ACAGTACATAGTACATAAAG;RSEQ=CATTTACCGTACATAGCACA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:2:2:1,1:0,0:0,2:1:0,2:13.5:1:33.2:1:1:0:60:4:1:0.5:1.5 1/1:10:10:4,6:0,0:0,10:1:0,2:23.6:1:37.8:1:1:0:60:20:1:0:1.5 |
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d262577e04b0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit c247c47e1bc869c9094997f5052ce31367e10b1e"
iuc
parents:
1
diff
changeset
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93 chrM 16521 \. C T 113 PASS STATUS=Germline;SAMPLE=Tumor;TYPE=SNV;DP=2;VD=2;AF=1;SHIFT3=0;MSI=2.000;MSILEN=1;SSF=1;SOR=0;LSEQ=ATCTGGTTCCTACTTCAGGG;RSEQ=CATAAAGCCTAAATAGCCCA GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM 1/1:2:2:1,1:0,0:0,2:1:0,2:33.5:1:38:1:1:0:52:4:1:0:1 1/1:11:11:5,6:0,0:0,11:1:0,2:20.8:1:32.9:1:1:0:50:2.667:1:0.0909:1 |