Mercurial > repos > iuc > vardict_java
comparison vardict.xml @ 1:5f756651a1bc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 2690164244722cfc32811015f2408b8275f06378"
author | iuc |
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date | Fri, 11 Sep 2020 21:07:13 +0000 |
parents | 2975b29bcaa1 |
children | d262577e04b0 |
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0:2975b29bcaa1 | 1:5f756651a1bc |
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6 <requirements> | 6 <requirements> |
7 <requirement type="package" version="@TOOL_VERSION@">vardict-java</requirement> | 7 <requirement type="package" version="@TOOL_VERSION@">vardict-java</requirement> |
8 <requirement type="package" version="5.0.1">gawk</requirement> | 8 <requirement type="package" version="5.0.1">gawk</requirement> |
9 <requirement type="package" version="1.10">samtools</requirement> | 9 <requirement type="package" version="1.10">samtools</requirement> |
10 </requirements> | 10 </requirements> |
11 <expand macro="stdio" /> | |
11 <command detect_errors="exit_code"><![CDATA[ | 12 <command detect_errors="exit_code"><![CDATA[ |
12 #if $select_mode.mode == "paired" | 13 #if $select_mode.mode == "paired" |
13 ln -s '$select_mode.normal' ./normal.bam && | 14 ln -s '$select_mode.normal' ./normal.bam && |
14 ln -s '$select_mode.normal.metadata.bam_index' ./normal.bam.bai && | 15 ln -s '$select_mode.normal.metadata.bam_index' ./normal.bam.bai && |
15 #end if | 16 #end if |