Mercurial > repos > iuc > vardict_java

diff macros.xml @ 1:5f756651a1bc draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 2690164244722cfc32811015f2408b8275f06378"
author iuc
date Fri, 11 Sep 2020 21:07:13 +0000
parents 2975b29bcaa1
children d262577e04b0
line wrap: on
line diff
--- a/macros.xml	Tue Aug 25 05:41:19 2020 -0400
+++ b/macros.xml	Fri Sep 11 21:07:13 2020 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@VERSION_SUFFIX@">0</token>
-    <token name="@TOOL_VERSION@">1.7.0</token>
+    <token name="@TOOL_VERSION@">1.8.1</token>
     <xml name="ref_select">
         <conditional name="reference_source">
             <param name="reference_source_selector" type="select" label="Choose the source for the reference genome file">
@@ -17,6 +17,11 @@
             </when>
         </conditional>
     </xml>
+    <xml name="stdio">
+        <stdio>
+            <regex match="java.lang.OutOfMemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" />
+        </stdio>
+    </xml>
     <xml name="input_default">
         <param name="tumor" type="data" format="bam" label="Tumor file" />
         <param name="interval_file" type="data" format="txt" optional="true" label="Chromosomes" help="Restrict SNV calls to the following list of chromosomes (one per line)" />