diff split.py @ 3:e0734e88a104 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 80e3742f499e8efabad1fe7627201466d0bdd190"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/split.py	Thu Jan 27 15:19:23 2022 +0000
@@ -0,0 +1,16 @@
+import sys
+
+
+fai = sys.argv[1]
+chunk_size = int(sys.argv[2])
+overlap = int(sys.argv[3])  # Base pairs
+with open(fai, 'r') as infile:
+    for line in infile:
+        name = line.split('\t')[0]
+        stop = int(line.split('\t')[1])
+        start = 1
+        while start < stop:
+            start = max(1, start - overlap)
+            print('\t'.join([name, str(start),
+                             str(min(start + chunk_size, stop))]))
+            start += chunk_size