Mercurial > repos > iuc > variant_analyzer
diff mut2sscs.xml @ 1:3556001ff2db draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/variant_analyzer commit 60dc8db809909edf44d662683b1f392b9d5964bf"
author | iuc |
---|---|
date | Wed, 04 Dec 2019 16:21:17 -0500 |
parents | 8d29173d49a9 |
children | 3f1dbd2c59bf |
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--- a/mut2sscs.xml Wed Nov 20 17:47:35 2019 -0500 +++ b/mut2sscs.xml Wed Dec 04 16:21:17 2019 -0500 @@ -1,14 +1,10 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="mut2sscs" name="DCS mutations to SSCS stats:" version="1.0.0" profile="19.01"> +<tool id="mut2sscs" name="DCS mutations to SSCS stats:" version="1.0.1" profile="19.01"> <description>Extracts all tags from the single stranded consensus sequence (SSCS) bam file that carry a mutation at the same position a mutation is called in the duplex consensus sequence (DCS) and calculates their frequencies</description> <macros> <import>va_macros.xml</import> </macros> - <requirements> - <requirement type="package" version="2.7">python</requirement> - <requirement type="package" version="1.4.0">matplotlib</requirement> - <requirement type="package" version="0.15">pysam</requirement> - </requirements> + <expand macro="requirements"/> <command><![CDATA[ ln -s '$file2' bam_input.bam && ln -s '${file2.metadata.bam_index}' bam_input.bam.bai &&