Mercurial > repos > iuc > varscan_somatic
comparison test-data/varscan_somatic_indel_result2.vcf @ 1:31a38ce7e8ae draft
planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/varscan commit 33c5694cb2e0a86a76d12a3355a2bd26deba7177
| author | iuc |
|---|---|
| date | Sun, 15 Jul 2018 09:19:25 -0400 |
| parents | |
| children |
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| 0:72b8ce355fae | 1:31a38ce7e8ae |
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| 1 ##fileformat=VCFv4.1 | |
| 2 ##source=VarScan2 | |
| 3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> | |
| 4 ##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> | |
| 5 ##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> | |
| 6 ##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> | |
| 7 ##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> | |
| 8 ##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> | |
| 9 ##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> | |
| 10 ##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> | |
| 11 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 13 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 14 ##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Depth of reference-supporting bases (reads1)"> | |
| 15 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Depth of variant-supporting bases (reads2)"> | |
| 16 ##FORMAT=<ID=FREQ,Number=1,Type=String,Description="Variant allele frequency"> | |
| 17 ##FORMAT=<ID=DP4,Number=1,Type=String,Description="Strand read counts: ref/fwd, ref/rev, var/fwd, var/rev"> | |
| 18 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOR |