diff test-data/test1.log @ 0:462e62be07e1 draft

planemo upload for repository https://github.com/jonas-fuchs/varVAMP commit 7f509fd29e994d1561ff9de14f26cf49f018dd2d

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test1.log	Sat Jan 27 12:34:39 2024 +0000
@@ -0,0 +1,35 @@
+VARVAMP log 
+
+MODE = single
+
+
+ARG SETTINGS
+
+THRESHOLD = 0.8
+PRIMER_ALLOWED_N_AMB = 3
+AMPLICON_OPT_LENGTH = 300
+AMPLICON_MAX_LENGTH = 400
+REPORT_N_AMPLICONS = 5
+
+CONFIG SETTINGS
+
+PRIMER_TMP = (56, 63, 60)
+PRIMER_GC_RANGE = (35, 65, 50)
+PRIMER_SIZES = (18, 24, 21)
+PRIMER_HAIRPIN = 47
+PRIMER_MAX_POLYX = 4
+PRIMER_MAX_DINUC_REPEATS = 4
+PRIMER_GC_END = (1, 3)
+PRIMER_MAX_DIMER_TMP = 47
+PRIMER_MIN_3_WITHOUT_AMB = 3
+PCR_MV_CONC = 100
+PCR_DV_CONC = 2
+PCR_DNTP_CONC = 0.8
+PCR_DNA_CONC = 15
+PRIMER_TM_PENALTY = 2
+PRIMER_GC_PENALTY = 0.2
+PRIMER_SIZE_PENALTY = 0.5
+PRIMER_MAX_BASE_PENALTY = 10
+PRIMER_3_PENALTY = (32, 16, 8, 4, 2)
+PRIMER_PERMUTATION_PENALTY = 0.1
+