# HG changeset patch
# User iuc
# Date 1712348139 0
# Node ID 80e18c0836e5cd2f6a9d4617eac3df9245a4dd65
# Parent  462e62be07e17b6417ffd35bd7e1685910682748
planemo upload for repository https://github.com/jonas-fuchs/varVAMP commit 1626c59de1e3aa8a9ccb8674b38a4654a03ab44b

diff -r 462e62be07e1 -r 80e18c0836e5 macros.xml
--- a/macros.xml	Sat Jan 27 12:34:39 2024 +0000
+++ b/macros.xml	Fri Apr 05 20:15:39 2024 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">1.1.1</token>
+    <token name="@TOOL_VERSION@">1.1.2</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="main_parameters">
         <conditional name="main_params">
diff -r 462e62be07e1 -r 80e18c0836e5 varvamp.xml
--- a/varvamp.xml	Sat Jan 27 12:34:39 2024 +0000
+++ b/varvamp.xml	Fri Apr 05 20:15:39 2024 +0000
@@ -8,6 +8,8 @@
     </xrefs>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">varvamp</requirement>
+        <requirement type="package" version="2.0.1">primer3-py</requirement>
+        <requirement type="package" version="0.7.17">seqfold</requirement>
     </requirements>
     <version_command>varvamp --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
@@ -458,6 +460,6 @@
 As a first check whether a new alignment of viral sequences can be used with specific settings of the tool, it may help to disable all configurable outputs, which will leave you with only the Analysis Log. This will be enough to see if there are any errors with the combination of alignment and settings, and whether you are on a roughly correct track (varVAMP reports some primers, for example). This way, you're not flooding your analysis history with lots of likely useless datasets, and once you've fixed potential issues you can add back more outputs and rerun the analysis.
     ]]></help>
     <citations>
-        <citation type="doi">https://github.com/jonas-fuchs/varVAMP/</citation>
+        <citation type="doi">10.5281/zenodo.10908223</citation>
     </citations>
 </tool>