comparison macros.xml @ 3:af1211ed6c8e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/ commit f93edebf6c946402f105f0622aacb0baa216a70c

2:b0d5976540e3

input_abundance <- read.delim("${input_abundance}", header=${header}, sep="\t", row.names=${ species_column })
input_abundance <- t( input_abundance[ c( ${ ",".join( $fixed_sample_columns ) } )] )

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    </token>

    <token name="@RSCRIPT_PREAMBLE@"><![CDATA[
options(bitmapType='cairo')## No X11, so we'll use cairo
library(vegan)
]]>

3:af1211ed6c8e

input_abundance <- read.delim("${input_abundance}", header=${header}, sep="\t", row.names=${ species_column })
input_abundance <- t( input_abundance[ c( ${ ",".join( $fixed_sample_columns ) } )] )

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    </token>
    
    <xml name="bio.tools_xrefs">
        <xrefs>
            <xref type="bio.tools">vegan</xref>
        </xrefs>
    </xml>

    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @Manual{,
                    title = {vegan: Community Ecology Package},
                    author = {Jari Oksanen and Gavin L. Simpson and F. Guillaume Blanchet and Roeland Kindt and Pierre Legendre and Peter R. Minchin and R.B. O'Hara and Peter Solymos and M. Henry H. Stevens and Eduard Szoecs and Helene Wagner and Matt Barbour and Michael Bedward and Ben Bolker and Daniel Borcard and Gustavo Carvalho and Michael Chirico and Miquel {De Caceres} and Sebastien Durand and Heloisa Beatriz Antoniazi Evangelista and Rich FitzJohn and Michael Friendly and Brendan Furneaux and Geoffrey Hannigan and Mark O. Hill and Leo Lahti and Dan McGlinn and Marie-Helene Ouellette and Eduardo {Ribeiro Cunha} and Tyler Smith and Adrian Stier and Cajo J.F. {Ter Braak} and James Weedon},
                    year = {2024},
                    note = {R package version 2.6-5},
                    url = {https://github.com/vegandevs/vegan},
                  }
            </citation>
        </citations>
    </xml>

    <token name="@RSCRIPT_PREAMBLE@"><![CDATA[
options(bitmapType='cairo')## No X11, so we'll use cairo
library(vegan)
]]>