diff test-data/x.gfa @ 0:e68d9dfa62a2 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vg commit fc3deb5bce07a12b7f9bbd380118a7d2230a1003"
author iuc
date Thu, 09 Apr 2020 04:35:27 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/x.gfa	Thu Apr 09 04:35:27 2020 -0400
@@ -0,0 +1,513 @@
+H	VN:Z:1.0
+S	56	ATTAGCCATGTGACTTTGAACAAGTTAGTTAA
+S	35	A
+S	110	TCATTGTCAAC
+S	60	T
+S	30	ACGTTTGACAATCTATCAC
+S	6	TTG
+S	67	T
+S	215	A
+S	73	A
+S	182	CTGCTCTCTT
+S	164	G
+S	115	ACATTAGGA
+S	153	T
+S	112	ACAGTCAACGCTCAATACAAGG
+S	185	TTGTCAGATC
+S	64	A
+S	186	G
+S	90	GAGGAAAGCCTCTGACAACTGGT
+S	139	GGGCAC
+S	4	T
+S	13	A
+S	86	C
+S	168	A
+S	207	CAAA
+S	104	TCCTTG
+S	183	A
+S	52	A
+S	177	T
+S	12	ATAT
+S	179	TGTCCAGGAATGAACC
+S	75	A
+S	23	T
+S	111	A
+S	41	TGGAGCCA
+S	43	G
+S	11	T
+S	68	GGAGAT
+S	171	G
+S	69	C
+S	82	G
+S	85	G
+S	130	TTGTGT
+S	119	G
+S	125	T
+S	39	C
+S	77	A
+S	126	G
+S	108	C
+S	71	AT
+S	66	C
+S	103	C
+S	156	C
+S	59	G
+S	172	CTGCTCTTTCCCTCAATTGTTCATTTGTCT
+S	208	T
+S	2	A
+S	10	A
+S	27	CTTTGATTTATTTGAAGT
+S	26	T
+S	211	GG
+S	124	TAAGACCCAGAGGGCTCACCCAGAGTCGAG
+S	144	T
+S	127	CTCAAGGACAGCTCTCC
+S	116	A
+S	100	T
+S	79	TTTGCTGTGAAGATTAAATTAGGTGATGCTTG
+S	200	C
+S	20	TGCTATGTGTAACTAGTAATGGTAATGGATAT
+S	81	T
+S	195	A
+S	141	T
+S	187	A
+S	213	A
+S	135	T
+S	9	AAATTTTCTGGAGTTCTAT
+S	189	A
+S	138	T
+S	109	T
+S	161	T
+S	107	GGCTCTTCTGGCTT
+S	46	T
+S	57	TCTCTCTGAACTTCAGTT
+S	152	GCTCTCCTTGTCCCTCC
+S	170	C
+S	88	C
+S	129	T
+S	209	G
+S	120	CTCTGCTCACCG
+S	78	G
+S	133	CAGAGTGTATACGA
+S	72	G
+S	24	TT
+S	8	G
+S	184	C
+S	37	A
+S	1	CAAATAAG
+S	137	TAACTCTGTTC
+S	22	C
+S	83	A
+S	154	C
+S	190	C
+S	201	T
+S	99	C
+S	121	C
+S	206	C
+S	14	T
+S	33	AGGGGTAATGTGGGGAA
+S	40	T
+S	113	A
+S	174	T
+S	165	A
+S	142	GGTGAAAGA
+S	5	C
+S	55	T
+S	114	G
+S	123	GATCTTCAAGTTTGAAAATTGCATCTCAAATC
+S	32	T
+S	136	G
+S	117	T
+S	45	C
+S	145	AACAGAGGAAATGCC
+S	197	T
+S	196	AGGGC
+S	210	CTACCCAGGCCATTTTAAGTTTCCTGT
+S	151	A
+S	54	G
+S	63	C
+S	191	TTCTCATCCCTCCT
+S	91	G
+S	62	ATT
+S	205	TACTCCACAT
+S	158	GATCTCTTCACT
+S	150	T
+S	176	C
+S	122	T
+S	58	C
+S	199	T
+S	28	A
+S	173	C
+S	148	GGCTTTTTATCAGAACATGTTTCCAAGCTTAT
+S	188	G
+S	92	A
+S	36	TGGAAAGAATAC
+S	98	TA
+S	204	C
+S	118	TGGCAGTAGCTCAGAGATCT
+S	162	C
+S	84	AAGCT
+S	7	A
+S	25	C
+S	203	G
+S	95	TTACTG
+S	76	G
+S	34	G
+S	50	TCCTCACTTTGCC
+S	93	A
+S	18	TCCTGG
+S	194	G
+S	147	T
+S	42	T
+S	87	AGGGAATAGTGCCTGGCAT
+S	132	C
+S	140	C
+S	157	A
+S	167	G
+S	169	GAA
+S	202	TAA
+S	16	G
+S	180	G
+S	160	GCCT
+S	19	T
+S	49	A
+S	44	ACAAATCTGGGT
+S	31	C
+S	146	G
+S	74	CTACTGACAGCAGA
+S	106	A
+S	61	A
+S	29	G
+S	94	G
+S	212	ACTAAGGACAAAGGTGCGGGGAGAT
+S	102	GAAACATTTGGCTATTGACCTCTTTC
+S	128	C
+S	159	G
+S	70	G
+S	21	GTTGGGCTT
+S	193	C
+S	38	AAGAT
+S	163	TTATCTTTACTGTTACC
+S	131	T
+S	192	T
+S	101	TTACTATGAATCCTCACCTTCCTTGACTTCTT
+S	105	G
+S	17	T
+S	53	CA
+S	47	CAA
+S	175	A
+S	166	AATCTTTCC
+S	89	A
+S	214	G
+S	198	C
+S	3	G
+S	80	TGA
+S	96	C
+S	51	G
+S	178	A
+S	149	CCCTTTTCCC
+S	155	A
+S	181	A
+S	143	A
+S	48	G
+S	15	CCAACTCTCTGG
+S	65	TCTCTAATA
+S	97	T
+S	134	A
+P	x	1+,3+,5+,6+,8+,9+,11+,12+,14+,15+,17+,18+,20+,21+,23+,24+,26+,27+,29+,30+,32+,33+,35+,36+,38+,40+,41+,43+,44+,46+,47+,49+,50+,52+,53+,55+,56+,57+,60+,61+,62+,64+,65+,67+,68+,70+,71+,73+,74+,76+,78+,79+,81+,83+,84+,86+,87+,89+,90+,92+,94+,95+,97+,98+,100+,101+,102+,103+,104+,106+,107+,109+,110+,112+,114+,115+,117+,118+,120+,122+,123+,124+,126+,127+,129+,130+,132+,133+,135+,136+,137+,139+,141+,142+,144+,145+,147+,148+,149+,151+,152+,154+,155+,157+,158+,159+,160+,162+,163+,165+,166+,168+,169+,171+,172+,174+,176+,177+,179+,181+,182+,184+,185+,187+,188+,190+,191+,193+,195+,196+,198+,199+,201+,202+,204+,205+,206+,207+,209+,210+,211+,212+,214+,215+	8M,1M,1M,3M,1M,19M,1M,4M,1M,12M,1M,6M,32M,9M,1M,2M,1M,18M,1M,19M,1M,17M,1M,12M,5M,1M,8M,1M,12M,1M,3M,1M,13M,1M,2M,1M,32M,18M,1M,1M,3M,1M,9M,1M,6M,1M,2M,1M,14M,1M,1M,32M,1M,1M,5M,1M,19M,1M,23M,1M,1M,6M,1M,2M,1M,32M,26M,1M,6M,1M,14M,1M,11M,22M,1M,9M,1M,20M,12M,1M,32M,30M,1M,17M,1M,6M,1M,14M,1M,1M,11M,6M,1M,9M,1M,15M,1M,32M,10M,1M,17M,1M,1M,1M,12M,1M,4M,1M,17M,1M,9M,1M,3M,1M,30M,1M,1M,1M,16M,1M,10M,1M,10M,1M,1M,1M,14M,1M,1M,5M,1M,1M,1M,3M,1M,10M,1M,4M,1M,27M,2M,25M,1M,1M	
+L	56	+	57	+	0M
+L	35	+	36	+	0M
+L	110	+	111	+	0M
+L	110	+	112	+	0M
+L	60	+	61	+	0M
+L	30	+	31	+	0M
+L	30	+	32	+	0M
+L	6	+	7	+	0M
+L	6	+	8	+	0M
+L	67	+	68	+	0M
+L	73	+	74	+	0M
+L	182	+	183	+	0M
+L	182	+	184	+	0M
+L	164	+	166	+	0M
+L	115	+	116	+	0M
+L	115	+	117	+	0M
+L	153	+	155	+	0M
+L	112	+	113	+	0M
+L	112	+	114	+	0M
+L	185	+	186	+	0M
+L	185	+	187	+	0M
+L	64	+	65	+	0M
+L	186	+	188	+	0M
+L	90	+	91	+	0M
+L	90	+	92	+	0M
+L	139	+	140	+	0M
+L	139	+	141	+	0M
+L	4	+	6	+	0M
+L	13	+	15	+	0M
+L	86	+	87	+	0M
+L	168	+	169	+	0M
+L	207	+	208	+	0M
+L	207	+	209	+	0M
+L	104	+	105	+	0M
+L	104	+	106	+	0M
+L	183	+	185	+	0M
+L	52	+	53	+	0M
+L	177	+	178	+	0M
+L	177	+	179	+	0M
+L	12	+	13	+	0M
+L	12	+	14	+	0M
+L	179	+	180	+	0M
+L	179	+	181	+	0M
+L	75	+	77	+	0M
+L	75	+	78	+	0M
+L	23	+	24	+	0M
+L	111	+	112	+	0M
+L	41	+	42	+	0M
+L	41	+	43	+	0M
+L	43	+	44	+	0M
+L	11	+	12	+	0M
+L	68	+	69	+	0M
+L	68	+	70	+	0M
+L	171	+	172	+	0M
+L	69	+	71	+	0M
+L	82	+	84	+	0M
+L	85	+	87	+	0M
+L	130	+	131	+	0M
+L	130	+	132	+	0M
+L	119	+	120	+	0M
+L	125	+	127	+	0M
+L	39	+	41	+	0M
+L	77	+	79	+	0M
+L	126	+	127	+	0M
+L	108	+	110	+	0M
+L	71	+	72	+	0M
+L	71	+	73	+	0M
+L	66	+	68	+	0M
+L	103	+	104	+	0M
+L	156	+	158	+	0M
+L	59	+	62	+	0M
+L	60	+	59	+	0M
+L	172	+	173	+	0M
+L	172	+	174	+	0M
+L	208	+	210	+	0M
+L	2	+	4	+	0M
+L	2	+	5	+	0M
+L	10	+	12	+	0M
+L	27	+	28	+	0M
+L	27	+	29	+	0M
+L	26	+	27	+	0M
+L	211	+	212	+	0M
+L	124	+	125	+	0M
+L	124	+	126	+	0M
+L	144	+	145	+	0M
+L	127	+	128	+	0M
+L	127	+	129	+	0M
+L	116	+	118	+	0M
+L	100	+	101	+	0M
+L	79	+	80	+	0M
+L	79	+	81	+	0M
+L	200	+	202	+	0M
+L	20	+	21	+	0M
+L	81	+	82	+	0M
+L	81	+	83	+	0M
+L	195	+	196	+	0M
+L	141	+	142	+	0M
+L	187	+	188	+	0M
+L	213	+	215	+	0M
+L	135	+	136	+	0M
+L	135	+	137	+	0M
+L	9	+	10	+	0M
+L	9	+	11	+	0M
+L	189	+	191	+	0M
+L	138	+	139	+	0M
+L	109	+	110	+	0M
+L	161	+	163	+	0M
+L	107	+	108	+	0M
+L	107	+	109	+	0M
+L	46	+	47	+	0M
+L	57	+	58	+	0M
+L	57	+	60	+	0M
+L	152	+	153	+	0M
+L	152	+	154	+	0M
+L	170	+	172	+	0M
+L	88	+	90	+	0M
+L	129	+	130	+	0M
+L	209	+	210	+	0M
+L	120	+	121	+	0M
+L	120	+	122	+	0M
+L	78	+	79	+	0M
+L	133	+	134	+	0M
+L	133	+	135	+	0M
+L	72	+	74	+	0M
+L	24	+	25	+	0M
+L	24	+	26	+	0M
+L	8	+	9	+	0M
+L	184	+	185	+	0M
+L	37	+	38	+	0M
+L	1	+	2	+	0M
+L	1	+	3	+	0M
+L	137	+	138	+	0M
+L	137	+	139	+	0M
+L	22	+	24	+	0M
+L	83	+	84	+	0M
+L	154	+	155	+	0M
+L	190	+	191	+	0M
+L	201	+	202	+	0M
+L	99	+	101	+	0M
+L	121	+	123	+	0M
+L	206	+	207	+	0M
+L	14	+	15	+	0M
+L	33	+	34	+	0M
+L	33	+	35	+	0M
+L	40	+	41	+	0M
+L	113	+	115	+	0M
+L	174	+	175	+	0M
+L	174	+	176	+	0M
+L	165	+	166	+	0M
+L	142	+	143	+	0M
+L	142	+	144	+	0M
+L	5	+	6	+	0M
+L	55	+	56	+	0M
+L	114	+	115	+	0M
+L	123	+	124	+	0M
+L	32	+	33	+	0M
+L	136	+	137	+	0M
+L	117	+	118	+	0M
+L	45	+	47	+	0M
+L	145	+	146	+	0M
+L	145	+	147	+	0M
+L	197	+	199	+	0M
+L	196	+	197	+	0M
+L	196	+	198	+	0M
+L	210	+	211	+	0M
+L	210	+	212	+	0M
+L	151	+	152	+	0M
+L	54	+	56	+	0M
+L	63	+	65	+	0M
+L	191	+	192	+	0M
+L	191	+	193	+	0M
+L	91	+	93	+	0M
+L	91	+	94	+	0M
+L	62	+	63	+	0M
+L	62	+	64	+	0M
+L	205	+	206	+	0M
+L	205	+	207	+	0M
+L	158	+	159	+	0M
+L	158	+	160	+	0M
+L	150	+	152	+	0M
+L	176	+	177	+	0M
+L	122	+	123	+	0M
+L	58	+	59	+	0M
+L	58	+	61	+	0M
+L	199	+	200	+	0M
+L	199	+	201	+	0M
+L	28	+	30	+	0M
+L	173	+	175	+	0M
+L	173	+	176	+	0M
+L	148	+	149	+	0M
+L	188	+	189	+	0M
+L	188	+	190	+	0M
+L	92	+	93	+	0M
+L	92	+	94	+	0M
+L	36	+	37	+	0M
+L	36	+	38	+	0M
+L	98	+	99	+	0M
+L	98	+	100	+	0M
+L	204	+	205	+	0M
+L	118	+	119	+	0M
+L	118	+	120	+	0M
+L	162	+	163	+	0M
+L	84	+	85	+	0M
+L	84	+	86	+	0M
+L	7	+	9	+	0M
+L	25	+	27	+	0M
+L	203	+	205	+	0M
+L	95	+	96	+	0M
+L	95	+	97	+	0M
+L	76	+	77	+	0M
+L	76	+	78	+	0M
+L	34	+	36	+	0M
+L	50	+	51	+	0M
+L	50	+	52	+	0M
+L	93	+	95	+	0M
+L	18	+	19	+	0M
+L	18	+	20	+	0M
+L	194	+	196	+	0M
+L	147	+	148	+	0M
+L	42	+	44	+	0M
+L	87	+	88	+	0M
+L	87	+	89	+	0M
+L	132	+	133	+	0M
+L	140	+	142	+	0M
+L	157	+	158	+	0M
+L	167	+	169	+	0M
+L	169	+	170	+	0M
+L	169	+	171	+	0M
+L	202	+	203	+	0M
+L	202	+	204	+	0M
+L	16	+	18	+	0M
+L	180	+	182	+	0M
+L	160	+	161	+	0M
+L	160	+	162	+	0M
+L	19	+	20	+	0M
+L	49	+	50	+	0M
+L	44	+	45	+	0M
+L	44	+	46	+	0M
+L	31	+	33	+	0M
+L	146	+	148	+	0M
+L	74	+	75	+	0M
+L	74	+	76	+	0M
+L	106	+	107	+	0M
+L	61	+	62	+	0M
+L	29	+	30	+	0M
+L	94	+	95	+	0M
+L	212	+	213	+	0M
+L	212	+	214	+	0M
+L	102	+	103	+	0M
+L	102	+	104	+	0M
+L	128	+	130	+	0M
+L	159	+	160	+	0M
+L	70	+	71	+	0M
+L	21	+	22	+	0M
+L	21	+	23	+	0M
+L	193	+	194	+	0M
+L	193	+	195	+	0M
+L	38	+	39	+	0M
+L	38	+	40	+	0M
+L	163	+	164	+	0M
+L	163	+	165	+	0M
+L	131	+	133	+	0M
+L	192	+	194	+	0M
+L	192	+	195	+	0M
+L	101	+	102	+	0M
+L	105	+	107	+	0M
+L	17	+	18	+	0M
+L	53	+	54	+	0M
+L	53	+	55	+	0M
+L	47	+	48	+	0M
+L	47	+	49	+	0M
+L	175	+	177	+	0M
+L	166	+	167	+	0M
+L	166	+	168	+	0M
+L	89	+	90	+	0M
+L	214	+	215	+	0M
+L	198	+	199	+	0M
+L	3	+	4	+	0M
+L	3	+	5	+	0M
+L	80	+	81	+	0M
+L	96	+	98	+	0M
+L	51	+	53	+	0M
+L	178	+	179	+	0M
+L	149	+	150	+	0M
+L	149	+	151	+	0M
+L	155	+	156	+	0M
+L	155	+	157	+	0M
+L	181	+	182	+	0M
+L	143	+	145	+	0M
+L	48	+	50	+	0M
+L	15	+	16	+	0M
+L	15	+	17	+	0M
+L	65	+	66	+	0M
+L	65	+	67	+	0M
+L	97	+	98	+	0M
+L	134	+	135	+	0M