Mercurial > repos > iuc > virannot_rps2tsv

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 16701bfbffd605805e847897799251ab748f559f
author iuc
date Sun, 08 Sep 2024 14:09:07 +0000
parents bbaa89f070f4
children
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bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
1 <html>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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2 <head>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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3 <title>rps2tree</title><script type="text/javascript" src="https://www.gstatic.com/charts/loader.js"></script>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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4 <script type="text/javascript">
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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5 google.charts.load('current', {'packages':['table']});
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
6 google.charts.setOnLoadCallback(pfam02123_pfam02123_RdRP_4);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
7 function pfam02123_pfam02123_RdRP_4() {
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
8 var data = new google.visualization.DataTable();
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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9 data.addColumn('string', '#OTU_name');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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10 data.addColumn('number', 'ds2020-267');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
11 data.addColumn('number', 'ds2020-328');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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12 data.addColumn('string', 'taxonomy');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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13 data.addColumn('string', 'contigs_list');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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14 data.addRows([
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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15 ['OTU_1',2258,77,'Viruses Wuhan insect virus 27','ds2020-267_16,ds2020-267_4,ds2020-328_97,ds2020-328_98'],
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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16 ['OTU_2',7516,0,'Viruses Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Quadriviridae Quadrivirus Rosellinia necatrix quadrivirus 1','ds2020-267_2'],
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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17 ['OTU_3',1161,0,'Viruses Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Quadriviridae Quadrivirus Rosellinia necatrix quadrivirus 1','ds2020-267_6'],
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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18 ['OTU_4',0,77,'Viruses Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae Totivirus Scheffersomyces segobiensis virus L','ds2020-328_109']
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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19 ]);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
20 var table = new google.visualization.Table(document.getElementById('pfam02123_pfam02123_RdRP_4_div'));
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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21 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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22
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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23 }
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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24 google.charts.setOnLoadCallback(pfam00680_pfam00680_RdRP_1);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
25 function pfam00680_pfam00680_RdRP_1() {
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
26 var data = new google.visualization.DataTable();
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
27 data.addColumn('string', '#OTU_name');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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28 data.addColumn('number', 'ds2020-267');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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29 data.addColumn('string', 'taxonomy');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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30 data.addColumn('string', 'contigs_list');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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31 data.addRows([
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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32 ['OTU_1',912,'Viruses Cryphonectria parasitica bipartite mycovirus 1','ds2020-267_21'],
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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33 ['OTU_2',3373,'Viruses Penicillium aurantiogriseum partiti-like virus','ds2020-267_8']
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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34 ]);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
35 var table = new google.visualization.Table(document.getElementById('pfam00680_pfam00680_RdRP_1_div'));
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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36 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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37
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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38 }
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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39 google.charts.setOnLoadCallback(pfam00665_pfam00665_rve);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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40 function pfam00665_pfam00665_rve() {
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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41 var data = new google.visualization.DataTable();
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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42 data.addColumn('string', '#OTU_name');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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43 data.addColumn('number', 'ds2020-328');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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44 data.addColumn('string', 'taxonomy');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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45 data.addColumn('string', 'contigs_list');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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46 data.addRows([
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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47 ['OTU_1',104,'Unknown','ds2020-328_118']
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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48 ]);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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49 var table = new google.visualization.Table(document.getElementById('pfam00665_pfam00665_rve_div'));
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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50 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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51
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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52 }
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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53 google.charts.setOnLoadCallback(pfam01443_pfam01443_Viral_helicase1);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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54 function pfam01443_pfam01443_Viral_helicase1() {
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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55 var data = new google.visualization.DataTable();
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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56 data.addColumn('string', '#OTU_name');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
diff changeset
57 data.addColumn('number', 'ds2020-328');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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58 data.addColumn('string', 'taxonomy');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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59 data.addColumn('string', 'contigs_list');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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60 data.addRows([
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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61 ['OTU_1',164,'Viruses Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Prune dwarf virus','ds2020-328_26']
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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62 ]);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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63 var table = new google.visualization.Table(document.getElementById('pfam01443_pfam01443_Viral_helicase1_div'));
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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64 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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65
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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66 }
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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67 google.charts.setOnLoadCallback(pfam00078_pfam00078_RVT_1);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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68 function pfam00078_pfam00078_RVT_1() {
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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69 var data = new google.visualization.DataTable();
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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70 data.addColumn('string', '#OTU_name');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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71 data.addColumn('number', 'ds2020-328');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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72 data.addColumn('string', 'taxonomy');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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73 data.addColumn('string', 'contigs_list');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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74 data.addRows([
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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75 ['OTU_1',0,'Unknown','ds2020-328_43']
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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76 ]);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
parents:
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77 var table = new google.visualization.Table(document.getElementById('pfam00078_pfam00078_RVT_1_div'));
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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78 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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79
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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80 }
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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81 google.charts.setOnLoadCallback(pfam01787_pfam01787_Ilar_coat);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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82 function pfam01787_pfam01787_Ilar_coat() {
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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83 var data = new google.visualization.DataTable();
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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84 data.addColumn('string', '#OTU_name');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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85 data.addColumn('number', 'ds2020-328');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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86 data.addColumn('string', 'taxonomy');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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87 data.addColumn('string', 'contigs_list');
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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88 data.addRows([
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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89 ['OTU_1',1825,'Viruses Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Prune dwarf virus','ds2020-328_7']
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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90 ]);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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91 var table = new google.visualization.Table(document.getElementById('pfam01787_pfam01787_Ilar_coat_div'));
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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92 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
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93
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94 }
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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95 google.charts.setOnLoadCallback(pfam01573_pfam01573_Bromo_MP);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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96 function pfam01573_pfam01573_Bromo_MP() {
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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97 var data = new google.visualization.DataTable();
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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98 data.addColumn('string', '#OTU_name');
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99 data.addColumn('number', 'ds2020-328');
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100 data.addColumn('string', 'taxonomy');
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101 data.addColumn('string', 'contigs_list');
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102 data.addRows([
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103 ['OTU_1',1825,'Viruses Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Prune dwarf virus','ds2020-328_7']
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104 ]);
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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105 var table = new google.visualization.Table(document.getElementById('pfam01573_pfam01573_Bromo_MP_div'));
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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106 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
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107
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108 }
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109 </script>
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110 </head>
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111 <div style="text-align:center">
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112 <h1 align=center>rps2tree</h1>
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113 <body>
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114 <h2>pfam02123 pfam02123_RdRP_4</h2>
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115 <p>pfam02123, RdRP_4, Viral RNA-directed RNA-polymerase. This family includes RNA-dependent RNA polymerase proteins (RdRPs) from Luteovirus, Totivirus and Rotavirus.</br></p>
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116 <div id="pfam02123_pfam02123_RdRP_4_div"></div>
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117 </br>
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118 </br>
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119 <img src=pfam02123_RdRP_4/tree.dnd.png href="pfam02123_RdRP_4/tree.dnd.png">
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120 </br>
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121 <a href="pfam02123_RdRP_4/seq_aligned.final_tree.fa">pfam02123_RdRP_4/seq_aligned.final_tree.fa</a>
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122 </br>
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123 <a href="pfam02123_RdRP_4/otu_cluster.csv">pfam02123_RdRP_4/otu_cluster.csv</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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124 </br>
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125 <a href="pfam02123_RdRP_4/cluster_nb_reads_files.tab">pfam02123_RdRP_4/cluster_nb_reads_files.tab</a>
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126 </br>
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127 <a href="pfam02123_RdRP_4/identity_matrix.csv">pfam02123_RdRP_4/identity_matrix.csv</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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128 </br>
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129 </br>
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130 <hr>
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131 <h2>pfam00680 pfam00680_RdRP_1</h2>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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132 <p>pfam00680, RdRP_1, RNA dependent RNA polymerase. </br></p>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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133 <div id="pfam00680_pfam00680_RdRP_1_div"></div>
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134 </br>
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135 </br>
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136 <img src=pfam00680_RdRP_1/tree.dnd.png href="pfam00680_RdRP_1/tree.dnd.png">
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137 </br>
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138 <a href="pfam00680_RdRP_1/seq_aligned.final_tree.fa">pfam00680_RdRP_1/seq_aligned.final_tree.fa</a>
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139 </br>
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140 <a href="pfam00680_RdRP_1/otu_cluster.csv">pfam00680_RdRP_1/otu_cluster.csv</a>
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141 </br>
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142 <a href="pfam00680_RdRP_1/cluster_nb_reads_files.tab">pfam00680_RdRP_1/cluster_nb_reads_files.tab</a>
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143 </br>
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144 <a href="pfam00680_RdRP_1/identity_matrix.csv">pfam00680_RdRP_1/identity_matrix.csv</a>
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145 </br>
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146 </br>
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147 <hr>
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148 <h2>pfam00665 pfam00665_rve</h2>
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149 <p>pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.</br></p>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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150 <div id="pfam00665_pfam00665_rve_div"></div>
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151 </br>
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152 </br>
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153 <img src=pfam00665_rve/tree.dnd.png href="pfam00665_rve/tree.dnd.png">
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154 </br>
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155 <a href="pfam00665_rve/seq_aligned.final_tree.fa">pfam00665_rve/seq_aligned.final_tree.fa</a>
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156 </br>
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157 <a href="pfam00665_rve/otu_cluster.csv">pfam00665_rve/otu_cluster.csv</a>
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158 </br>
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159 <a href="pfam00665_rve/cluster_nb_reads_files.tab">pfam00665_rve/cluster_nb_reads_files.tab</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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160 </br>
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iuc
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161 <a href="pfam00665_rve/identity_matrix.csv">pfam00665_rve/identity_matrix.csv</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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162 </br>
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163 </br>
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164 <hr>
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165 <h2>pfam01443 pfam01443_Viral_helicase1</h2>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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166 <p>pfam01443, Viral_helicase1, Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.</br></p>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
iuc
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167 <div id="pfam01443_pfam01443_Viral_helicase1_div"></div>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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168 </br>
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169 </br>
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170 <img src=pfam01443_Viral_helicase1/tree.dnd.png href="pfam01443_Viral_helicase1/tree.dnd.png">
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171 </br>
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172 <a href="pfam01443_Viral_helicase1/seq_aligned.final_tree.fa">pfam01443_Viral_helicase1/seq_aligned.final_tree.fa</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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173 </br>
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174 <a href="pfam01443_Viral_helicase1/otu_cluster.csv">pfam01443_Viral_helicase1/otu_cluster.csv</a>
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175 </br>
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176 <a href="pfam01443_Viral_helicase1/cluster_nb_reads_files.tab">pfam01443_Viral_helicase1/cluster_nb_reads_files.tab</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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177 </br>
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178 <a href="pfam01443_Viral_helicase1/identity_matrix.csv">pfam01443_Viral_helicase1/identity_matrix.csv</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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179 </br>
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180 </br>
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181 <hr>
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182 <h2>pfam00078 pfam00078_RVT_1</h2>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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183 <p>pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase). A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses.</br></p>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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184 <div id="pfam00078_pfam00078_RVT_1_div"></div>
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185 </br>
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186 </br>
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187 <img src=pfam00078_RVT_1/tree.dnd.png href="pfam00078_RVT_1/tree.dnd.png">
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188 </br>
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189 <a href="pfam00078_RVT_1/seq_aligned.final_tree.fa">pfam00078_RVT_1/seq_aligned.final_tree.fa</a>
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190 </br>
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191 <a href="pfam00078_RVT_1/otu_cluster.csv">pfam00078_RVT_1/otu_cluster.csv</a>
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192 </br>
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193 <a href="pfam00078_RVT_1/cluster_nb_reads_files.tab">pfam00078_RVT_1/cluster_nb_reads_files.tab</a>
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194 </br>
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195 <a href="pfam00078_RVT_1/identity_matrix.csv">pfam00078_RVT_1/identity_matrix.csv</a>
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196 </br>
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197 </br>
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198 <hr>
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199 <h2>pfam01787 pfam01787_Ilar_coat</h2>
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200 <p>pfam01787, Ilar_coat, Ilarvirus coat protein. This family consists of various coat proteins from the ilarviruses part of the Bromoviridae, members include apple mosaic virus and prune dwarf virus. The ilarvirus coat protein is required to initiate replication of the viral genome in host plants. Members of the Bromoviridae have a positive stand ssRNA genome with no DNA stage in there replication.</br></p>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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201 <div id="pfam01787_pfam01787_Ilar_coat_div"></div>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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202 </br>
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203 </br>
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204 <img src=pfam01787_Ilar_coat/tree.dnd.png href="pfam01787_Ilar_coat/tree.dnd.png">
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205 </br>
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206 <a href="pfam01787_Ilar_coat/seq_aligned.final_tree.fa">pfam01787_Ilar_coat/seq_aligned.final_tree.fa</a>
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207 </br>
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208 <a href="pfam01787_Ilar_coat/otu_cluster.csv">pfam01787_Ilar_coat/otu_cluster.csv</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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209 </br>
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210 <a href="pfam01787_Ilar_coat/cluster_nb_reads_files.tab">pfam01787_Ilar_coat/cluster_nb_reads_files.tab</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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211 </br>
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212 <a href="pfam01787_Ilar_coat/identity_matrix.csv">pfam01787_Ilar_coat/identity_matrix.csv</a>
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213 </br>
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214 </br>
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215 <hr>
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216 <h2>pfam01573 pfam01573_Bromo_MP</h2>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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217 <p>pfam01573, Bromo_MP, Bromovirus movement protein. </br></p>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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218 <div id="pfam01573_pfam01573_Bromo_MP_div"></div>
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219 </br>
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220 </br>
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221 <img src=pfam01573_Bromo_MP/tree.dnd.png href="pfam01573_Bromo_MP/tree.dnd.png">
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222 </br>
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223 <a href="pfam01573_Bromo_MP/seq_aligned.final_tree.fa">pfam01573_Bromo_MP/seq_aligned.final_tree.fa</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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224 </br>
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225 <a href="pfam01573_Bromo_MP/otu_cluster.csv">pfam01573_Bromo_MP/otu_cluster.csv</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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226 </br>
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227 <a href="pfam01573_Bromo_MP/cluster_nb_reads_files.tab">pfam01573_Bromo_MP/cluster_nb_reads_files.tab</a>
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228 </br>
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229 <a href="pfam01573_Bromo_MP/identity_matrix.csv">pfam01573_Bromo_MP/identity_matrix.csv</a>
bbaa89f070f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 3a3b40c15ae5e82334f016e88b1f3c5bbbb3b2cd
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230 </br>
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231 </br>
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232 <hr>
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233 </body>
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234 </div>
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235 </html>