virheat: test-data/day_0.vcf annotate

annotate test-data/day_0.vcf @ 1:30584e80d61e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit 5ae40d4f44fc2716f3c37a9fad2077a0d0230a6d

author	iuc
date	Mon, 03 Jun 2024 09:37:09 +0000
parents	d2a1ac520392
children

rev	line source
0 d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	1 ##fileformat=VCFv4.0
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	2 ##fileDate=20221107
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 20 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.001 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512:1-7475 -o /data/jwd/main/051/983/51983887/tmp/lofreq2_call_parallel5jc80x1b/0.vcf.gz reads.bam
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	4 ##reference=reference.fa
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_68,Description="Minimum SNV Quality (Phred) 68">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_52,Description="Minimum Indel Quality (Phred) 52">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_75,Description="Minimum SNV Quality (Phred) 75">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_59,Description="Minimum Indel Quality (Phred) 59">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.100000,Description="Minimum allele frequency 0.100000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_20,Description="Minimum Coverage 20">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	19 ##SnpEffVersion="4.3t (build 2017-11-24 10:18), by Pablo Cingolani"
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-intron -no-upstream -stats /data/jwd/main/051/984/51984232/outputs/galaxy_dataset_f67ea69f-27ab-4c3a-8123-aa00ce3bcfc5.dat -csvStats /data/jwd/main/051/984/51984232/outputs/galaxy_dataset_b24403cd-d8d0-4f8b-8135-dd54e4d95bb6.dat SARS-CoV-2 /data/dnb06/galaxy_db/files/9/e/2/dataset_9e2f8143-a5e2-4252-a581-f7ebfdbad1a0.dat "
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	25 NC_045512 509 . GGTCATGTTA G 49314.0 PASS AF=0.985068;DP=2143;DP4=115,135,1144,967;HRUN=2;SB=18;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatg/gtg\|GHVM82V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	26 NC_045512 670 . T G 49314.0 PASS AF=0.946303;DP=2272;DP4=0,1,1147,1122;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agT/agG\|S135R\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	27 NC_045512 900 . C T 49314.0 PASS AF=0.956388;DP=4563;DP4=2,1,2338,2219;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S212L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	28 NC_045512 1980 . G T 8807.0 PASS AF=0.932806;DP=253;DP4=0,0,120,132;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G572V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	29 NC_045512 2790 . C T 38289.0 PASS AF=0.939585;DP=1109;DP4=1,0,544,559;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T842I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	30 NC_045512 3037 . C T 49314.0 PASS AF=0.942435;DP=2571;DP4=1,0,1309,1252;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	31 NC_045512 4184 . G A 49314.0 PASS AF=0.957771;DP=1705;DP4=1,3,980,720;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1307S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	32 NC_045512 4321 . C T 25301.0 PASS AF=0.559110;DP=1438;DP4=560,9,445,420;SB=1004;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A1352\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	33 NC_045512 9344 . C T 42764.0 PASS AF=0.962932;DP=1187;DP4=0,0,585,600;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3027F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	34 NC_045512 9424 . A G 39669.0 PASS AF=0.939264;DP=1169;DP4=0,1,571,594;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtA/gtG\|V3053\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	35 NC_045512 9534 . C T 49314.0 PASS AF=0.953536;DP=1937;DP4=0,0,954,979;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T3090I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	36 NC_045512 9866 . C T 46582.0 PASS AF=0.947727;DP=1320;DP4=1,0,728,589;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3201F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	37 NC_045512 10007 . G T 8795.0 PASS AF=0.163850;DP=2130;DP4=835,931,175,188;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Ttt\|V3248F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	38 NC_045512 10029 . C T 49314.0 PASS AF=0.921837;DP=2047;DP4=1,1,980,1059;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T3255I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	39 NC_045512 10198 . C T 49314.0 PASS AF=0.966712;DP=1472;DP4=0,0,732,739;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3311\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	40 NC_045512 10447 . G A 20327.0 PASS AF=0.937824;DP=579;DP4=0,1,279,294;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R3394\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	41 NC_045512 10449 . C A 20378.0 PASS AF=0.937075;DP=588;DP4=0,1,290,294;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cAc\|P3395H\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	42 NC_045512 11287 . GTCTGGTTTT G 11976.0 PASS AF=0.992188;DP=384;DP4=25,32,186,195;HRUN=1;SB=2;INDEL;EFF=CODON_DELETION(MODERATE\|\|tctggtttt/\|SGF3675\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	43 NC_045512 11986 . CT C 9884.0 PASS AF=0.180684;DP=1843;DP4=734,794,158,175;HRUN=3;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F3908\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|1\|1.00)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	44 NC_045512 12010 . T C 9640.0 PASS AF=0.197383;DP=1834;DP4=690,757,180,200;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctT/ctC\|L3915\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	45 NC_045512 12880 . C T 28248.0 PASS AF=0.952261;DP=796;DP4=0,0,395,400;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I4205\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	46 NC_045512 14408 . C T 49314.0 PASS AF=0.948265;DP=3054;DP4=1,0,1504,1544;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4720L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	47 NC_045512 15451 . G A 49314.0 PASS AF=0.668282;DP=2683;DP4=422,343,1040,871;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G5068S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	48 NC_045512 15714 . C T 49314.0 PASS AF=0.952639;DP=2027;DP4=0,2,1001,1018;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L5155\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	49 NC_045512 17410 . C T 21064.0 PASS AF=0.953177;DP=598;DP4=0,0,305,292;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R5721C\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	50 NC_045512 18099 . T C 2222.0 PASS AF=0.195699;DP=465;DP4=178,186,49,52;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P5950\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	51 NC_045512 18109 . C T 2238.0 PASS AF=0.202899;DP=414;DP4=157,163,42,49;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P5954S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	52 NC_045512 18163 . A G 12159.0 PASS AF=0.915761;DP=368;DP4=1,0,189,177;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ata/Gta\|I5972V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	53 NC_045512 19567 . G A 3996.0 PASS AF=0.122390;DP=1389;DP4=399,801,80,108;SB=18;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V6440I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	54 NC_045512 19573 . A G 4596.0 PASS AF=0.133286;DP=1418;DP4=444,765,73,136;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aaa/Gaa\|K6442E\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	55 NC_045512 19955 . C T 49314.0 PASS AF=0.935817;DP=2228;DP4=2,1,1095,1125;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T6569I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	56 NC_045512 20055 . A G 14927.0 PASS AF=0.849794;DP=486;DP4=33,1,222,229;SB=82;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaA/gaG\|E6602\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	57 NC_045512 20719 . C T 12143.0 PASS AF=0.906077;DP=362;DP4=0,0,194,166;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L6824\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	58 NC_045512 21618 . C T 49314.0 PASS AF=0.958417;DP=1491;DP4=0,2,708,779;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T19I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	59 NC_045512 21632 . TTACCCCCTG T 45139.0 PASS AF=0.979167;DP=1344;DP4=62,51,610,706;HRUN=2;SB=10;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ttaccccctgca/tca\|LPPA24S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	60 NC_045512 21987 . G A 49314.0 PASS AF=0.916475;DP=1736;DP4=1,0,947,785;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G142D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	61 NC_045512 22200 . T G 43891.0 PASS AF=0.923369;DP=1318;DP4=2,0,598,712;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTg/gGg\|V213G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	62 NC_045512 22578 . G A 49314.0 PASS AF=0.916014;DP=2298;DP4=1,2,1129,1159;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G339D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	63 NC_045512 22629 . A C 49314.0 PASS AF=0.941638;DP=2039;DP4=1,2,1001,1029;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aCg\|K356T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	64 NC_045512 22664 . C A 49314.0 PASS AF=0.931017;DP=1986;DP4=3,2,952,1020;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cta/Ata\|L368I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	65 NC_045512 22674 . C T 49314.0 PASS AF=0.923038;DP=1962;DP4=0,0,934,1020;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S371F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	66 NC_045512 22679 . T C 49314.0 PASS AF=0.924305;DP=1942;DP4=5,2,932,999;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S373P\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	67 NC_045512 22686 . C T 49314.0 PASS AF=0.944383;DP=1816;DP4=1,3,872,930;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S375F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	68 NC_045512 22688 . A G 49314.0 PASS AF=0.930825;DP=1807;DP4=1,3,878,920;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T376A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	69 NC_045512 22716 . C T 49314.0 PASS AF=0.943596;DP=1702;DP4=0,1,861,835;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T385I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	70 NC_045512 22775 . G A 35776.0 PASS AF=0.497243;DP=5440;DP4=1181,1454,1224,1580;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Aat\|D405N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	71 NC_045512 22786 . A C 49314.0 PASS AF=0.899777;DP=3143;DP4=4,10,1370,1749;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agA/agC\|R408S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	72 NC_045512 22792 . C T 49314.0 PASS AF=0.951280;DP=3202;DP4=1,3,1397,1798;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I410\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	73 NC_045512 22813 . G T 49314.0 PASS AF=0.955807;DP=3530;DP4=0,0,1594,1929;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K417N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	74 NC_045512 22882 . T G 49314.0 PASS AF=0.914912;DP=2374;DP4=2,5,1226,1137;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N440K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	75 NC_045512 22992 . G A 49314.0 PASS AF=0.949436;DP=2393;DP4=1,3,1142,1241;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGc/aAc\|S477N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	76 NC_045512 22995 . C A 49314.0 PASS AF=0.953994;DP=2391;DP4=1,0,1143,1237;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aAa\|T478K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	77 NC_045512 23013 . A C 49314.0 PASS AF=0.925880;DP=2415;DP4=6,8,1143,1254;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gCa\|E484A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	78 NC_045512 23040 . A G 49314.0 PASS AF=0.934878;DP=2288;DP4=1,1,1075,1204;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q493R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	79 NC_045512 23055 . A G 49314.0 PASS AF=0.923908;DP=2129;DP4=0,1,996,1130;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q498R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	80 NC_045512 23063 . A T 49314.0 PASS AF=0.949386;DP=2035;DP4=1,0,957,1073;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N501Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	81 NC_045512 23075 . T C 49314.0 PASS AF=0.929851;DP=2010;DP4=1,2,968,1036;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y505H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	82 NC_045512 23403 . A G 13496.0 PASS AF=0.911111;DP=405;DP4=0,0,194,209;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	83 NC_045512 23525 . C T 13061.0 PASS AF=0.961749;DP=366;DP4=0,0,179,186;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H655Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	84 NC_045512 23599 . T G 25427.0 PASS AF=0.933060;DP=732;DP4=1,0,357,374;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N679K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	85 NC_045512 23604 . C A 25309.0 PASS AF=0.950207;DP=723;DP4=1,0,355,367;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cAt\|P681H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	86 NC_045512 23854 . C A 13475.0 PASS AF=0.936061;DP=391;DP4=0,3,201,187;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaC/aaA\|N764K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	87 NC_045512 23896 . C A 14321.0 PASS AF=0.924706;DP=425;DP4=1,0,218,204;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acC/acA\|T778\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	88 NC_045512 23948 . G T 15027.0 PASS AF=0.945368;DP=421;DP4=0,0,211,208;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D796Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	89 NC_045512 24414 . T C 6543.0 PASS AF=0.109148;DP=2547;DP4=1157,1077,145,151;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTg/gCg\|V951A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	90 NC_045512 24424 . A T 49314.0 PASS AF=0.941726;DP=2677;DP4=2,6,1383,1284;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caA/caT\|Q954H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	91 NC_045512 24469 . T A 49314.0 PASS AF=0.938789;DP=3104;DP4=4,5,1574,1511;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N969K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	92 NC_045512 24966 . A G 39163.0 PASS AF=0.592112;DP=2079;DP4=355,383,644,670;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aGc\|N1135S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	93 NC_045512 25000 . C T 49314.0 PASS AF=0.929600;DP=1875;DP4=2,2,933,929;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1146\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	94 NC_045512 25584 . C T 49314.0 PASS AF=0.791209;DP=1911;DP4=116,111,898,783;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acC/acT\|T64\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	95 NC_045512 26060 . C T 49009.0 PASS AF=0.932336;DP=1404;DP4=0,0,688,704;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T223I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	96 NC_045512 26270 . C T 16453.0 PASS AF=0.950216;DP=462;DP4=0,0,237,225;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T9I\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	97 NC_045512 26577 . C G 49314.0 PASS AF=0.936701;DP=1564;DP4=0,0,777,780;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q19E\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	98 NC_045512 26709 . G A 49314.0 PASS AF=0.935736;DP=2303;DP4=1,4,1144,1147;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A63T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	99 NC_045512 26801 . C T 49314.0 PASS AF=0.938601;DP=2101;DP4=0,0,996,1101;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L93\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	100 NC_045512 26858 . C T 49314.0 PASS AF=0.957931;DP=1759;DP4=1,1,822,931;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F112\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	101 NC_045512 27259 . A C 44987.0 PASS AF=0.935045;DP=1324;DP4=0,1,622,699;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Agg/Cgg\|R20\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	102 NC_045512 27382 . G C 18297.0 PASS AF=0.947059;DP=510;DP4=0,0,261,247;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Cat\|D61H\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	103 NC_045512 27383 . A T 18139.0 PASS AF=0.940711;DP=506;DP4=0,0,260,245;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D61V\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	104 NC_045512 27384 . T C 18232.0 PASS AF=0.932563;DP=519;DP4=1,1,266,249;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D61\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	105 NC_045512 27481 . C T 21723.0 PASS AF=0.939873;DP=632;DP4=0,0,317,313;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L30F\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	106 NC_045512 27549 . C T 49314.0 PASS AF=0.955696;DP=1738;DP4=0,0,889,845;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N52\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	107 NC_045512 27807 . C T 38239.0 PASS AF=0.954248;DP=1071;DP4=0,1,536,532;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L18\|43\|ORF7b\|protein_coding\|CODING\|GU280_gp08\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	108 NC_045512 28271 . A T 49314.0 PASS AF=0.938308;DP=2010;DP4=3,7,1017,983;SB=6
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	109 NC_045512 28311 . C T 49314.0 PASS AF=0.876293;DP=2126;DP4=6,3,1078,1031;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cTc\|P13L\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	110 NC_045512 28361 . GGAGAACGCA G 45389.0 PASS AF=0.770975;DP=1764;DP4=274,137,617,743;HRUN=2;SB=135;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggagaacgcagt/ggt\|GERS30G\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	111 NC_045512 28881 . G A 49314.0 PASS AF=0.944488;DP=2540;DP4=1,0,1235,1301;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGg/aAg\|R203K\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	112 NC_045512 28882 . G A 49314.0 PASS AF=0.927811;DP=2535;DP4=1,3,1230,1289;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R203\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	113 NC_045512 28883 . G C 49314.0 PASS AF=0.943889;DP=2602;DP4=0,0,1268,1330;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gga/Cga\|G204R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	114 NC_045512 29510 . A C 49314.0 PASS AF=0.942593;DP=5400;DP4=3,3,2537,2850;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Agt/Cgt\|S413R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	115 NC_045512 29733 . CGAGGCCACGCGGAGTACGATCGAGTG C 49314.0 PASS AF=0.986599;DP=2164;DP4=460,413,897,1238;HRUN=1;SB=69;INDEL

Mercurial > repos > iuc > virheat

annotate test-data/day_0.vcf @ 1:30584e80d61e draft