virheat: test-data/day_103.vcf annotate

annotate test-data/day_103.vcf @ 1:30584e80d61e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit 5ae40d4f44fc2716f3c37a9fad2077a0d0230a6d

author	iuc
date	Mon, 03 Jun 2024 09:37:09 +0000
parents	d2a1ac520392
children

rev	line source
0 d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	1 ##fileformat=VCFv4.0
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	2 ##fileDate=20220906
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 20 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.001 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512:1-7475 -o /data/jwd/main/050/269/50269469/tmp/lofreq2_call_parallelcuwr5kal/0.vcf.gz reads.bam
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	4 ##reference=reference.fa
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_65,Description="Minimum SNV Quality (Phred) 65">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_48,Description="Minimum Indel Quality (Phred) 48">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_74,Description="Minimum SNV Quality (Phred) 74">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_57,Description="Minimum Indel Quality (Phred) 57">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.100000,Description="Minimum allele frequency 0.100000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_20,Description="Minimum Coverage 20">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	19 ##SnpEffVersion="4.3t (build 2017-11-24 10:18), by Pablo Cingolani"
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-intron -no-upstream -stats /data/jwd01/main/050/269/50269704/outputs/galaxy_dataset_1406dfab-b1f3-45c3-a9b6-bac554061078.dat -csvStats /data/jwd01/main/050/269/50269704/outputs/galaxy_dataset_48d91a15-1687-4370-a8bf-80a1ae5e324e.dat SARS-CoV-2 /data/dnb06/galaxy_db/files/1/e/8/dataset_1e8a611f-9522-456d-aa71-f8aa0c52bd75.dat "
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	25 NC_045512 509 . GGTCATGTTA G 49314.0 PASS AF=0.950231;DP=1728;DP4=106,95,958,684;HRUN=2;SB=8;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatg/gtg\|GHVM82V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	26 NC_045512 670 . T G 39786.0 PASS AF=0.922306;DP=1197;DP4=0,0,576,617;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agT/agG\|S135R\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	27 NC_045512 751 . C T 3293.0 PASS AF=0.111922;DP=1233;DP4=536,543,78,75;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N162\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	28 NC_045512 900 . C T 49314.0 PASS AF=0.938511;DP=1854;DP4=1,0,961,891;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S212L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	29 NC_045512 1238 . C T 9465.0 PASS AF=0.327919;DP=985;DP4=294,335,170,184;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H325Y\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	30 NC_045512 1980 . G T 5469.0 PASS AF=0.886905;DP=168;DP4=1,1,82,82;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G572V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	31 NC_045512 2790 . C T 8824.0 PASS AF=0.937008;DP=254;DP4=1,1,119,131;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T842I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	32 NC_045512 3037 . C T 25966.0 PASS AF=0.934927;DP=753;DP4=4,3,376,367;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	33 NC_045512 4184 . G A 6923.0 PASS AF=0.877934;DP=213;DP4=0,0,115,98;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1307S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	34 NC_045512 4276 . C T 4760.0 PASS AF=0.948529;DP=136;DP4=0,0,108,28;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y1337\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	35 NC_045512 4321 . C T 1017.0 PASS AF=0.387097;DP=93;DP4=53,1,24,15;SB=54;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A1352\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	36 NC_045512 6354 . C T 5868.0 PASS AF=0.848958;DP=192;DP4=11,0,110,70;SB=21;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S2030L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	37 NC_045512 9344 . C T 29191.0 PASS AF=0.957265;DP=819;DP4=0,0,417,399;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3027F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	38 NC_045512 9424 . A G 25822.0 PASS AF=0.949062;DP=746;DP4=0,0,372,373;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtA/gtG\|V3053\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	39 NC_045512 9495 . T C 25358.0 PASS AF=0.858709;DP=821;DP4=4,59,411,347;SB=142;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTa/gCa\|V3077A\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	40 NC_045512 9534 . C T 38418.0 PASS AF=0.938588;DP=1091;DP4=0,0,382,707;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T3090I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	41 NC_045512 9866 . C T 18168.0 PASS AF=0.938697;DP=522;DP4=1,0,335,184;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3201F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	42 NC_045512 10029 . C T 27199.0 PASS AF=0.863046;DP=847;DP4=0,4,525,315;SB=16;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T3255I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	43 NC_045512 10198 . C T 26940.0 PASS AF=0.910224;DP=802;DP4=3,2,415,381;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3311\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	44 NC_045512 10447 . G A 16847.0 PASS AF=0.869732;DP=522;DP4=2,0,252,265;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R3394\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	45 NC_045512 10449 . C A 17359.0 PASS AF=0.891841;DP=527;DP4=0,2,257,264;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cAc\|P3395H\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	46 NC_045512 11287 . GTCTGGTTTT G 9083.0 PASS AF=0.976898;DP=303;DP4=19,16,144,152;HRUN=1;SB=2;INDEL;EFF=CODON_DELETION(MODERATE\|\|tctggtttt/\|SGF3675\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	47 NC_045512 12015 . T G 1187.0 PASS AF=0.117096;DP=427;DP4=160,210,23,34;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gGt\|V3917G\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	48 NC_045512 12036 . C T 11567.0 PASS AF=0.903955;DP=354;DP4=0,0,158,196;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3924V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	49 NC_045512 12342 . C T 16756.0 PASS AF=0.680999;DP=721;DP4=175,24,312,206;SB=130;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T4026I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	50 NC_045512 12854 . C T 13148.0 PASS AF=0.882793;DP=401;DP4=0,0,217,183;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P4197S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	51 NC_045512 12880 . C T 14431.0 PASS AF=0.955112;DP=401;DP4=0,0,212,189;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I4205\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	52 NC_045512 14408 . C T 38296.0 PASS AF=0.938588;DP=1091;DP4=1,1,547,540;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4720L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	53 NC_045512 14724 . C T 45290.0 PASS AF=0.927526;DP=1366;DP4=4,2,634,714;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F4825\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	54 NC_045512 15451 . G A 31057.0 PASS AF=0.811966;DP=1053;DP4=2,0,634,407;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G5068S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	55 NC_045512 15714 . C T 38183.0 PASS AF=0.933817;DP=1103;DP4=10,12,517,558;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L5155\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	56 NC_045512 17410 . C T 4056.0 PASS AF=0.925000;DP=120;DP4=0,0,57,62;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R5721C\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	57 NC_045512 18163 . A G 7395.0 PASS AF=0.860169;DP=236;DP4=0,0,123,113;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ata/Gta\|I5972V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	58 NC_045512 19955 . C T 42798.0 PASS AF=0.914877;DP=1257;DP4=2,1,658,594;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T6569I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	59 NC_045512 20055 . A G 12436.0 PASS AF=0.904000;DP=375;DP4=19,0,135,221;SB=76;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaA/gaG\|E6602\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	60 NC_045512 20719 . C T 11814.0 PASS AF=0.891061;DP=358;DP4=2,0,237,117;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L6824\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	61 NC_045512 21618 . C T 39403.0 PASS AF=0.913234;DP=1141;DP4=0,1,553,574;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T19I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	62 NC_045512 21632 . TTACCCCCTG T 37561.0 PASS AF=0.993778;DP=1125;DP4=8,18,541,577;HRUN=2;SB=9;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ttaccccctgca/tca\|LPPA24S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	63 NC_045512 21987 . G A 15152.0 PASS AF=0.850932;DP=483;DP4=1,0,234,247;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G142D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	64 NC_045512 22200 . T G 5164.0 PASS AF=0.947368;DP=152;DP4=0,0,67,85;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTg/gGg\|V213G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	65 NC_045512 22578 . G A 37640.0 PASS AF=0.877238;DP=1173;DP4=2,1,560,602;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G339D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	66 NC_045512 22599 . G C 39078.0 PASS AF=0.952338;DP=1112;DP4=1,0,537,572;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGa/aCa\|R346T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	67 NC_045512 22629 . A C 35645.0 PASS AF=0.919508;DP=1056;DP4=0,0,517,539;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aCg\|K356T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	68 NC_045512 22664 . C A 34060.0 PASS AF=0.896585;DP=1025;DP4=5,0,439,566;SB=17;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cta/Ata\|L368I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	69 NC_045512 22674 . C T 28971.0 PASS AF=0.812753;DP=988;DP4=0,4,411,568;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S371F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	70 NC_045512 22679 . T C 31759.0 PASS AF=0.929487;DP=936;DP4=0,0,390,543;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S373P\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	71 NC_045512 22686 . C T 26369.0 PASS AF=0.863477;DP=857;DP4=0,4,360,487;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S375F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	72 NC_045512 22688 . A G 27392.0 PASS AF=0.903148;DP=826;DP4=0,1,357,468;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T376A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	73 NC_045512 22716 . C T 23123.0 PASS AF=0.952087;DP=647;DP4=0,1,303,342;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T385I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	74 NC_045512 22775 . G A 41610.0 PASS AF=0.817662;DP=1574;DP4=83,112,686,691;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Aat\|D405N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	75 NC_045512 22786 . A C 49314.0 PASS AF=0.888278;DP=1638;DP4=1,3,841,788;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agA/agC\|R408S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	76 NC_045512 22792 . C T 49314.0 PASS AF=0.910736;DP=1658;DP4=1,0,856,799;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I410\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	77 NC_045512 22813 . G T 49314.0 PASS AF=0.906464;DP=1903;DP4=7,1,1033,861;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K417N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	78 NC_045512 22882 . T G 49314.0 PASS AF=0.892879;DP=1643;DP4=5,3,943,686;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N440K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	79 NC_045512 22992 . G A 49314.0 PASS AF=0.934586;DP=1544;DP4=0,1,654,884;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGc/aAc\|S477N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	80 NC_045512 22995 . C A 49314.0 PASS AF=0.948320;DP=1548;DP4=0,1,659,884;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aAa\|T478K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	81 NC_045512 23013 . A C 49314.0 PASS AF=0.890767;DP=1538;DP4=11,9,637,874;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gCa\|E484A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	82 NC_045512 23040 . A G 46108.0 PASS AF=0.904110;DP=1387;DP4=1,2,597,785;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q493R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	83 NC_045512 23055 . A G 40054.0 PASS AF=0.895414;DP=1243;DP4=2,1,556,682;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q498R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	84 NC_045512 23063 . A T 42199.0 PASS AF=0.936364;DP=1210;DP4=0,1,558,649;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N501Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	85 NC_045512 23075 . T C 38081.0 PASS AF=0.903501;DP=1171;DP4=1,0,570,598;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y505H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	86 NC_045512 23278 . T C 13812.0 PASS AF=0.380259;DP=1236;DP4=287,451,192,302;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acT/acC\|T572\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	87 NC_045512 23403 . A G 16603.0 PASS AF=0.913894;DP=511;DP4=1,1,220,287;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	88 NC_045512 23525 . C T 11697.0 PASS AF=0.902299;DP=348;DP4=0,0,168,179;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H655Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	89 NC_045512 23599 . T G 36022.0 PASS AF=0.914953;DP=1070;DP4=4,4,556,505;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N679K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	90 NC_045512 23604 . C A 35013.0 PASS AF=0.891791;DP=1072;DP4=1,0,551,512;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cAt\|P681H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	91 NC_045512 23854 . C A 20324.0 PASS AF=0.863706;DP=653;DP4=7,9,323,314;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaC/aaA\|N764K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	92 NC_045512 23948 . G T 26988.0 PASS AF=0.869928;DP=838;DP4=7,11,424,394;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D796Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	93 NC_045512 24424 . A T 49314.0 PASS AF=0.896979;DP=2019;DP4=1,10,1115,887;SB=24;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caA/caT\|Q954H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	94 NC_045512 24469 . T A 49314.0 PASS AF=0.919902;DP=2447;DP4=3,0,1307,1129;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N969K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	95 NC_045512 24966 . A G 41768.0 PASS AF=0.907801;DP=1269;DP4=2,2,550,708;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aGc\|N1135S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	96 NC_045512 25000 . C T 37059.0 PASS AF=0.908842;DP=1097;DP4=1,1,527,565;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1146\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	97 NC_045512 25584 . C T 48242.0 PASS AF=0.852652;DP=1527;DP4=2,7,893,621;SB=14;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acC/acT\|T64\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	98 NC_045512 26060 . C T 30995.0 PASS AF=0.955326;DP=873;DP4=0,0,411,462;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T223I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	99 NC_045512 26195 . C T 6504.0 PASS AF=0.864734;DP=207;DP4=2,0,98,106;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T268M\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	100 NC_045512 26270 . C T 7692.0 PASS AF=0.914798;DP=223;DP4=0,0,114,107;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T9I\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	101 NC_045512 26333 . C T 6516.0 PASS AF=0.921053;DP=190;DP4=0,0,101,89;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T30I\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	102 NC_045512 26542 . C T 2537.0 PASS AF=0.128571;DP=840;DP4=367,338,65,53;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T7I\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	103 NC_045512 26577 . C G 34567.0 PASS AF=0.905314;DP=1035;DP4=0,0,507,523;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q19E\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	104 NC_045512 26625 . C T 39521.0 PASS AF=0.955896;DP=1111;DP4=1,0,525,576;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L35\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	105 NC_045512 26709 . G A 49314.0 PASS AF=0.924801;DP=2008;DP4=11,9,985,995;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A63T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	106 NC_045512 26754 . G A 43115.0 PASS AF=0.630244;DP=2050;DP4=305,308,724,707;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G78S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	107 NC_045512 26801 . C T 49314.0 PASS AF=0.894977;DP=1752;DP4=11,10,842,884;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L93\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	108 NC_045512 26858 . C T 33747.0 PASS AF=0.875120;DP=1041;DP4=6,7,459,562;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F112\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	109 NC_045512 27259 . A C 49314.0 PASS AF=0.884010;DP=2095;DP4=8,15,817,1249;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Agg/Cgg\|R20\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	110 NC_045512 27382 . G C 20379.0 PASS AF=0.919056;DP=593;DP4=0,0,292,297;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Cat\|D61H\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	111 NC_045512 27383 . A T 19296.0 PASS AF=0.873720;DP=586;DP4=1,0,289,292;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D61V\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	112 NC_045512 27384 . T C 20584.0 PASS AF=0.917647;DP=595;DP4=0,0,298,297;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D61\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	113 NC_045512 27481 . C T 24969.0 PASS AF=0.942577;DP=714;DP4=0,0,348,364;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L30F\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	114 NC_045512 27549 . C T 42569.0 PASS AF=0.899366;DP=1262;DP4=0,0,625,635;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N52\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	115 NC_045512 27807 . C T 18628.0 PASS AF=0.947269;DP=531;DP4=1,0,257,269;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L18\|43\|ORF7b\|protein_coding\|CODING\|GU280_gp08\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	116 NC_045512 28271 . A T 49314.0 PASS AF=0.893357;DP=2213;DP4=2,12,1098,1083;SB=21
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	117 NC_045512 28311 . C T 49314.0 PASS AF=0.806593;DP=2518;DP4=14,27,1260,1205;SB=14;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cTc\|P13L\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	118 NC_045512 28361 . GGAGAACGCA G 46560.0 PASS AF=0.712057;DP=2115;DP4=428,205,665,841;HRUN=2;SB=226;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggagaacgcagt/ggt\|GERS30G\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	119 NC_045512 28657 . C T 49314.0 PASS AF=0.863677;DP=3389;DP4=12,16,1835,1497;SB=5;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D128\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	120 NC_045512 28881 . G A 49314.0 PASS AF=0.943852;DP=1407;DP4=0,1,620,782;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGg/aAg\|R203K\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	121 NC_045512 28882 . G A 45952.0 PASS AF=0.889522;DP=1403;DP4=1,0,618,772;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R203\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	122 NC_045512 28883 . G C 48422.0 PASS AF=0.927208;DP=1415;DP4=0,0,623,789;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gga/Cga\|G204R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	123 NC_045512 29510 . A C 49314.0 PASS AF=0.916667;DP=4344;DP4=2,2,1880,2446;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Agt/Cgt\|S413R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	124 NC_045512 29733 . CGAGGCCACGCGGAGTACGATCGAGTG C 49314.0 PASS AF=0.990955;DP=1990;DP4=174,138,681,1291;HRUN=1;SB=117;INDEL

Mercurial > repos > iuc > virheat

annotate test-data/day_103.vcf @ 1:30584e80d61e draft