virheat: test-data/day_26.vcf annotate

annotate test-data/day_26.vcf @ 1:30584e80d61e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit 5ae40d4f44fc2716f3c37a9fad2077a0d0230a6d

author	iuc
date	Mon, 03 Jun 2024 09:37:09 +0000
parents	d2a1ac520392
children

rev	line source
0 d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	1 ##fileformat=VCFv4.0
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	2 ##fileDate=20220830
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 20 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.001 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512:1-7475 -o /data/jwd/main/050/067/50067387/tmp/lofreq2_call_parallelawyalhqx/0.vcf.gz reads.bam
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	4 ##reference=reference.fa
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_67,Description="Minimum SNV Quality (Phred) 67">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_52,Description="Minimum Indel Quality (Phred) 52">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_74,Description="Minimum SNV Quality (Phred) 74">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_60,Description="Minimum Indel Quality (Phred) 60">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.100000,Description="Minimum allele frequency 0.100000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_20,Description="Minimum Coverage 20">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	19 ##SnpEffVersion="4.3t (build 2017-11-24 10:18), by Pablo Cingolani"
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-intron -no-upstream -stats /data/jwd01/main/050/067/50067624/outputs/galaxy_dataset_1f02ecc6-19df-4f6d-aa04-cc785461e78a.dat -csvStats /data/jwd01/main/050/067/50067624/outputs/galaxy_dataset_443b1fc7-832e-41e3-8e2a-105d5489e124.dat SARS-CoV-2 /data/dnb06/galaxy_db/files/f/d/0/dataset_fd092746-8c86-4a76-9631-3e6490e97b29.dat "
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	25 NC_045512 509 . GGTCATGTTA G 32496.0 PASS AF=0.991159;DP=1018;DP4=51,45,579,430;HRUN=2;SB=3;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatg/gtg\|GHVM82V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	26 NC_045512 670 . T G 44671.0 PASS AF=0.966222;DP=1273;DP4=0,0,659,614;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agT/agG\|S135R\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	27 NC_045512 900 . C T 49314.0 PASS AF=0.975994;DP=2666;DP4=7,5,1345,1308;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S212L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	28 NC_045512 1980 . G T 23479.0 PASS AF=0.978022;DP=637;DP4=0,0,320,317;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G572V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	29 NC_045512 2790 . C T 35600.0 PASS AF=0.990722;DP=970;DP4=0,0,478,492;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T842I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	30 NC_045512 3037 . C T 49314.0 PASS AF=0.982786;DP=1917;DP4=0,0,962,952;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	31 NC_045512 4184 . G A 28231.0 PASS AF=0.983073;DP=768;DP4=0,1,451,316;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1307S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	32 NC_045512 4276 . C T 25805.0 PASS AF=0.988571;DP=700;DP4=1,1,501,197;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y1337\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	33 NC_045512 4321 . C T 15676.0 PASS AF=0.761667;DP=600;DP4=136,1,250,213;SB=287;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A1352\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	34 NC_045512 6354 . C T 23153.0 PASS AF=0.801462;DP=821;DP4=149,0,406,266;SB=285;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S2030L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	35 NC_045512 9344 . C T 44260.0 PASS AF=0.984950;DP=1196;DP4=0,0,588,608;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3027F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	36 NC_045512 9424 . A G 42091.0 PASS AF=0.973207;DP=1157;DP4=1,1,571,583;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtA/gtG\|V3053\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	37 NC_045512 9534 . C T 49314.0 PASS AF=0.989791;DP=2155;DP4=0,0,1054,1101;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T3090I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	38 NC_045512 9866 . C T 49314.0 PASS AF=0.980783;DP=1405;DP4=1,1,827,575;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3201F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	39 NC_045512 10029 . C T 49314.0 PASS AF=0.953757;DP=1557;DP4=0,2,681,869;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T3255I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	40 NC_045512 10198 . C T 42819.0 PASS AF=0.975445;DP=1181;DP4=1,1,612,567;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3311\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	41 NC_045512 10447 . G A 31832.0 PASS AF=0.961495;DP=883;DP4=2,1,417,461;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R3394\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	42 NC_045512 10449 . C A 31879.0 PASS AF=0.973563;DP=870;DP4=0,1,414,453;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cAc\|P3395H\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	43 NC_045512 11287 . GTCTGGTTTT G 21643.0 PASS AF=0.992515;DP=668;DP4=49,62,321,342;HRUN=1;SB=3;INDEL;EFF=CODON_DELETION(MODERATE\|\|tctggtttt/\|SGF3675\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	44 NC_045512 12036 . C T 44979.0 PASS AF=0.960187;DP=1281;DP4=0,1,615,663;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3924V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	45 NC_045512 12854 . C T 30930.0 PASS AF=0.977300;DP=837;DP4=0,0,420,417;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P4197S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	46 NC_045512 12880 . C T 32562.0 PASS AF=0.990847;DP=874;DP4=0,0,424,450;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I4205\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	47 NC_045512 14408 . C T 49314.0 PASS AF=0.982794;DP=2441;DP4=0,2,1219,1220;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4720L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	48 NC_045512 15451 . G A 49314.0 PASS AF=0.963636;DP=1485;DP4=3,1,854,627;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G5068S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	49 NC_045512 15714 . C T 42612.0 PASS AF=0.976844;DP=1166;DP4=0,0,570,596;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L5155\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	50 NC_045512 17410 . C T 22565.0 PASS AF=0.990148;DP=609;DP4=0,1,290,318;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R5721C\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	51 NC_045512 18163 . A G 25478.0 PASS AF=0.973315;DP=712;DP4=0,0,358,354;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ata/Gta\|I5972V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	52 NC_045512 19955 . C T 49314.0 PASS AF=0.974684;DP=1738;DP4=3,6,1020,705;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T6569I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	53 NC_045512 20055 . A G 24581.0 PASS AF=0.956772;DP=694;DP4=15,0,326,353;SB=46;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaA/gaG\|E6602\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	54 NC_045512 20719 . C T 31418.0 PASS AF=0.973225;DP=859;DP4=0,0,471,388;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L6824\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	55 NC_045512 21618 . C T 49314.0 PASS AF=0.989832;DP=2262;DP4=0,0,1089,1173;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T19I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	56 NC_045512 21632 . TTACCCCCTG T 49314.0 PASS AF=0.972236;DP=1981;DP4=87,108,921,1005;HRUN=2;SB=3;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ttaccccctgca/tca\|LPPA24S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	57 NC_045512 21987 . G A 49314.0 PASS AF=0.962881;DP=1805;DP4=0,0,956,847;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G142D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	58 NC_045512 22200 . T G 29772.0 PASS AF=0.953970;DP=869;DP4=1,3,404,460;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTg/gGg\|V213G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	59 NC_045512 22578 . G A 49314.0 PASS AF=0.970785;DP=1643;DP4=3,2,789,847;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G339D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	60 NC_045512 22629 . A C 49314.0 PASS AF=0.961675;DP=1409;DP4=1,0,703,704;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aCg\|K356T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	61 NC_045512 22664 . C A 49314.0 PASS AF=0.968773;DP=1377;DP4=2,1,661,711;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cta/Ata\|L368I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	62 NC_045512 22674 . C T 48559.0 PASS AF=0.967907;DP=1371;DP4=0,0,668,703;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S371F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	63 NC_045512 22679 . T C 48650.0 PASS AF=0.972874;DP=1364;DP4=0,1,671,691;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S373P\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	64 NC_045512 22686 . C T 46120.0 PASS AF=0.961861;DP=1311;DP4=2,2,650,653;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S375F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	65 NC_045512 22688 . A G 46077.0 PASS AF=0.960829;DP=1302;DP4=4,4,649,643;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T376A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	66 NC_045512 22716 . C T 49314.0 PASS AF=0.985936;DP=1351;DP4=0,0,707,643;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T385I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	67 NC_045512 22775 . G A 49314.0 PASS AF=0.933405;DP=2778;DP4=61,84,1263,1369;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Aat\|D405N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	68 NC_045512 22786 . A C 49314.0 PASS AF=0.962482;DP=2772;DP4=4,4,1316,1441;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agA/agC\|R408S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	69 NC_045512 22792 . C T 49314.0 PASS AF=0.976694;DP=2789;DP4=2,2,1338,1447;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I410\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	70 NC_045512 22813 . G T 49314.0 PASS AF=0.982210;DP=2923;DP4=2,0,1403,1518;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K417N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	71 NC_045512 22882 . T G 49314.0 PASS AF=0.967190;DP=2103;DP4=3,1,1167,929;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N440K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	72 NC_045512 22992 . G A 49314.0 PASS AF=0.973366;DP=1652;DP4=1,0,759,889;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGc/aAc\|S477N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	73 NC_045512 22995 . C A 49314.0 PASS AF=0.976277;DP=1644;DP4=0,0,761,882;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aAa\|T478K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	74 NC_045512 23013 . A C 49314.0 PASS AF=0.968427;DP=1647;DP4=4,1,771,868;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gCa\|E484A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	75 NC_045512 23040 . A G 49314.0 PASS AF=0.971710;DP=1626;DP4=0,0,782,844;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q493R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	76 NC_045512 23055 . A G 49314.0 PASS AF=0.963467;DP=1615;DP4=0,0,777,838;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q498R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	77 NC_045512 23063 . A T 49314.0 PASS AF=0.987766;DP=1553;DP4=0,0,751,798;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N501Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	78 NC_045512 23075 . T C 49314.0 PASS AF=0.975032;DP=1562;DP4=0,0,775,786;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y505H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	79 NC_045512 23403 . A G 23982.0 PASS AF=0.968563;DP=668;DP4=0,0,309,358;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	80 NC_045512 23525 . C T 23629.0 PASS AF=0.969136;DP=648;DP4=0,0,313,334;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H655Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	81 NC_045512 23599 . T G 49314.0 PASS AF=0.973811;DP=1451;DP4=1,1,742,707;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N679K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	82 NC_045512 23604 . C A 49314.0 PASS AF=0.984583;DP=1427;DP4=0,0,727,696;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cAt\|P681H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	83 NC_045512 23854 . C A 41371.0 PASS AF=0.968885;DP=1157;DP4=1,1,585,569;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaC/aaA\|N764K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	84 NC_045512 23948 . G T 44271.0 PASS AF=0.968543;DP=1208;DP4=2,2,606,594;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D796Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	85 NC_045512 24424 . A T 49314.0 PASS AF=0.985166;DP=2764;DP4=3,4,1408,1348;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caA/caT\|Q954H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	86 NC_045512 24469 . T A 49314.0 PASS AF=0.978951;DP=2993;DP4=1,0,1482,1508;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N969K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	87 NC_045512 24966 . A G 49314.0 PASS AF=0.974902;DP=1793;DP4=1,0,881,904;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aGc\|N1135S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	88 NC_045512 25000 . C T 49314.0 PASS AF=0.976404;DP=1780;DP4=0,0,873,904;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1146\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	89 NC_045512 25584 . C T 49314.0 PASS AF=0.954421;DP=1821;DP4=0,0,1029,792;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acC/acT\|T64\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	90 NC_045512 26060 . C T 49314.0 PASS AF=0.985141;DP=2019;DP4=0,2,994,1021;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T223I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	91 NC_045512 26195 . C T 30983.0 PASS AF=0.963636;DP=880;DP4=0,0,431,448;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T268M\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	92 NC_045512 26270 . C T 33971.0 PASS AF=0.984699;DP=915;DP4=0,1,480,433;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T9I\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	93 NC_045512 26408 . C T 49314.0 PASS AF=0.838681;DP=2275;DP4=145,128,1020,926;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S55F\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	94 NC_045512 26577 . C G 42818.0 PASS AF=0.974468;DP=1175;DP4=0,0,552,623;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q19E\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	95 NC_045512 26709 . G A 49314.0 PASS AF=0.974217;DP=2172;DP4=2,1,1212,954;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A63T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	96 NC_045512 26801 . C T 49314.0 PASS AF=0.977684;DP=2599;DP4=0,2,1303,1292;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L93\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	97 NC_045512 26858 . C T 49314.0 PASS AF=0.988884;DP=2249;DP4=1,1,991,1256;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F112\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	98 NC_045512 27259 . A C 49314.0 PASS AF=0.965937;DP=2466;DP4=9,13,1006,1437;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Agg/Cgg\|R20\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	99 NC_045512 27382 . G C 32891.0 PASS AF=0.977401;DP=885;DP4=0,0,440,445;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Cat\|D61H\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	100 NC_045512 27383 . A T 32874.0 PASS AF=0.982798;DP=872;DP4=0,1,434,434;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D61V\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	101 NC_045512 27384 . T C 32957.0 PASS AF=0.976217;DP=883;DP4=0,2,440,441;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D61\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	102 NC_045512 27481 . C T 31950.0 PASS AF=0.976136;DP=880;DP4=1,1,429,443;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L30F\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	103 NC_045512 27549 . C T 49314.0 PASS AF=0.985227;DP=1963;DP4=0,1,996,966;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N52\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	104 NC_045512 27807 . C T 39295.0 PASS AF=0.981256;DP=1067;DP4=0,0,530,535;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L18\|43\|ORF7b\|protein_coding\|CODING\|GU280_gp08\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	105 NC_045512 28271 . A T 49314.0 PASS AF=0.978363;DP=3420;DP4=2,2,1669,1742;SB=0
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	106 NC_045512 28311 . C T 49314.0 PASS AF=0.948180;DP=3242;DP4=1,2,1575,1662;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cTc\|P13L\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	107 NC_045512 28361 . GGAGAACGCA G 49314.0 PASS AF=0.793066;DP=2740;DP4=448,129,803,1370;HRUN=2;SB=691;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggagaacgcagt/ggt\|GERS30G\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	108 NC_045512 28657 . C T 49314.0 PASS AF=0.963598;DP=2390;DP4=1,2,1275,1108;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D128\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	109 NC_045512 28881 . G A 38189.0 PASS AF=0.972763;DP=1028;DP4=0,0,487,540;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGg/aAg\|R203K\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	110 NC_045512 28882 . G A 37112.0 PASS AF=0.962927;DP=1025;DP4=1,1,486,536;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R203\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	111 NC_045512 28883 . G C 38233.0 PASS AF=0.978967;DP=1046;DP4=0,0,499,544;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gga/Cga\|G204R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	112 NC_045512 29510 . A C 49314.0 PASS AF=0.967644;DP=3307;DP4=1,2,1444,1851;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Agt/Cgt\|S413R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	113 NC_045512 29733 . CGAGGCCACGCGGAGTACGATCGAGTG C 43802.0 PASS AF=0.990859;DP=1094;DP4=198,202,360,724;HRUN=1;SB=78;INDEL

Mercurial > repos > iuc > virheat

annotate test-data/day_26.vcf @ 1:30584e80d61e draft