virheat: test-data/day_55.vcf annotate

annotate test-data/day_55.vcf @ 1:30584e80d61e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit 5ae40d4f44fc2716f3c37a9fad2077a0d0230a6d

author	iuc
date	Mon, 03 Jun 2024 09:37:09 +0000
parents	d2a1ac520392
children

rev	line source
0 d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	1 ##fileformat=VCFv4.0
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	2 ##fileDate=20220901
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 20 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.001 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512:1-7475 -o /data/jwd/main/050/129/50129874/tmp/lofreq2_call_parallel_4m1yhf9/0.vcf.gz reads.bam
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	4 ##reference=reference.fa
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_69,Description="Minimum SNV Quality (Phred) 69">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_54,Description="Minimum Indel Quality (Phred) 54">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_76,Description="Minimum SNV Quality (Phred) 76">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_62,Description="Minimum Indel Quality (Phred) 62">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.100000,Description="Minimum allele frequency 0.100000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_20,Description="Minimum Coverage 20">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	19 ##SnpEffVersion="4.3t (build 2017-11-24 10:18), by Pablo Cingolani"
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-intron -no-upstream -stats /data/jwd01/main/050/130/50130117/outputs/galaxy_dataset_54d75f13-335c-4bee-9f56-a8cc78951a0e.dat -csvStats /data/jwd01/main/050/130/50130117/outputs/galaxy_dataset_a4477757-f597-48ad-a763-e3d57c7946ec.dat SARS-CoV-2 /data/dnb06/galaxy_db/files/a/9/a/dataset_a9aee115-dacc-4ec4-a915-a667c1f8b549.dat "
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	25 NC_045512 241 . C T 2150.0 PASS AF=0.983607;DP=61;DP4=0,0,30,31;SB=0
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	26 NC_045512 509 . GGTCATGTTA G 49314.0 PASS AF=0.990594;DP=2339;DP4=136,167,1257,1060;HRUN=2;SB=26;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatg/gtg\|GHVM82V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	27 NC_045512 670 . T G 49314.0 PASS AF=0.977359;DP=2915;DP4=0,0,1471,1444;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agT/agG\|S135R\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	28 NC_045512 900 . C T 49314.0 PASS AF=0.982265;DP=6428;DP4=27,23,3221,3157;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S212L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	29 NC_045512 1980 . G T 34404.0 PASS AF=0.983871;DP=930;DP4=0,0,458,468;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G572V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	30 NC_045512 2790 . C T 49314.0 PASS AF=0.982153;DP=1793;DP4=0,0,892,897;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T842I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	31 NC_045512 3037 . C T 49314.0 PASS AF=0.981051;DP=4433;DP4=0,0,2205,2220;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	32 NC_045512 4184 . G A 49314.0 PASS AF=0.988202;DP=2119;DP4=3,2,1183,931;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1307S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	33 NC_045512 4276 . C T 49314.0 PASS AF=0.981818;DP=1980;DP4=1,1,1403,575;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y1337\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	34 NC_045512 4321 . C T 40010.0 PASS AF=0.657609;DP=1840;DP4=596,8,635,599;SB=1173;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A1352\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	35 NC_045512 5628 . C T 49314.0 PASS AF=0.966059;DP=1974;DP4=22,20,938,994;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T1788M\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	36 NC_045512 6354 . C T 30043.0 PASS AF=0.541788;DP=1711;DP4=774,1,530,406;SB=1263;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S2030L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	37 NC_045512 8109 . C T 49314.0 PASS AF=0.968127;DP=2008;DP4=19,16,1017,956;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T2615I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	38 NC_045512 9344 . C T 49314.0 PASS AF=0.988103;DP=3194;DP4=1,0,1583,1609;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3027F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	39 NC_045512 9424 . A G 49314.0 PASS AF=0.976721;DP=3050;DP4=1,1,1520,1528;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtA/gtG\|V3053\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	40 NC_045512 9534 . C T 49314.0 PASS AF=0.987535;DP=5054;DP4=0,0,2472,2582;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T3090I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	41 NC_045512 9866 . C T 49314.0 PASS AF=0.980011;DP=3652;DP4=5,6,1966,1674;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3201F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	42 NC_045512 10029 . C T 49314.0 PASS AF=0.957557;DP=4241;DP4=1,1,2025,2212;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T3255I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	43 NC_045512 10198 . C T 49314.0 PASS AF=0.984712;DP=2878;DP4=1,1,1450,1423;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3311\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	44 NC_045512 10447 . G A 49314.0 PASS AF=0.981521;DP=1894;DP4=1,1,920,971;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R3394\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	45 NC_045512 10449 . C A 49314.0 PASS AF=0.981142;DP=1909;DP4=0,3,934,971;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cAc\|P3395H\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	46 NC_045512 11287 . GTCTGGTTTT G 44284.0 PASS AF=0.994074;DP=1350;DP4=118,131,668,674;HRUN=1;SB=3;INDEL;EFF=CODON_DELETION(MODERATE\|\|tctggtttt/\|SGF3675\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	47 NC_045512 12036 . C T 49314.0 PASS AF=0.977939;DP=3037;DP4=1,0,1500,1533;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3924V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	48 NC_045512 12854 . C T 49314.0 PASS AF=0.978914;DP=1897;DP4=1,0,953,942;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P4197S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	49 NC_045512 12880 . C T 49314.0 PASS AF=0.984450;DP=1865;DP4=1,1,927,936;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I4205\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	50 NC_045512 14408 . C T 49314.0 PASS AF=0.987194;DP=5232;DP4=2,3,2604,2622;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4720L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	51 NC_045512 15451 . G A 49314.0 PASS AF=0.973996;DP=3884;DP4=4,4,2076,1798;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G5068S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	52 NC_045512 15714 . C T 49314.0 PASS AF=0.982387;DP=2555;DP4=0,1,1249,1301;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L5155\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	53 NC_045512 17410 . C T 49314.0 PASS AF=0.983071;DP=1713;DP4=0,0,872,838;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R5721C\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	54 NC_045512 18163 . A G 49314.0 PASS AF=0.981366;DP=1771;DP4=0,0,876,895;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ata/Gta\|I5972V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	55 NC_045512 19955 . C T 49314.0 PASS AF=0.983919;DP=5410;DP4=0,0,2706,2704;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T6569I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	56 NC_045512 20055 . A G 49314.0 PASS AF=0.878327;DP=1578;DP4=168,1,696,713;SB=454;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaA/gaG\|E6602\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	57 NC_045512 20719 . C T 49314.0 PASS AF=0.983268;DP=1793;DP4=1,1,931,860;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L6824\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	58 NC_045512 21618 . C T 49314.0 PASS AF=0.992293;DP=4282;DP4=2,3,2045,2232;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T19I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	59 NC_045512 21632 . TTACCCCCTG T 49314.0 PASS AF=0.971920;DP=3490;DP4=211,224,1595,1797;HRUN=2;SB=2;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ttaccccctgca/tca\|LPPA24S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	60 NC_045512 21987 . G A 49314.0 PASS AF=0.976943;DP=3860;DP4=1,0,2009,1848;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G142D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	61 NC_045512 22200 . T G 49314.0 PASS AF=0.978495;DP=2232;DP4=2,3,1064,1163;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTg/gGg\|V213G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	62 NC_045512 22578 . G A 49314.0 PASS AF=0.976501;DP=3830;DP4=2,1,1895,1932;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G339D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	63 NC_045512 22629 . A C 49314.0 PASS AF=0.980153;DP=3527;DP4=0,0,1757,1763;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aCg\|K356T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	64 NC_045512 22664 . C A 49314.0 PASS AF=0.977541;DP=3384;DP4=5,4,1661,1711;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cta/Ata\|L368I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	65 NC_045512 22674 . C T 49314.0 PASS AF=0.974561;DP=3420;DP4=0,1,1667,1752;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S371F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	66 NC_045512 22679 . T C 49314.0 PASS AF=0.976274;DP=3414;DP4=2,5,1668,1739;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S373P\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	67 NC_045512 22686 . C T 49314.0 PASS AF=0.976059;DP=3258;DP4=4,5,1593,1651;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S375F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	68 NC_045512 22688 . A G 49314.0 PASS AF=0.977301;DP=3216;DP4=5,4,1586,1618;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T376A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	69 NC_045512 22716 . C T 49314.0 PASS AF=0.985468;DP=3303;DP4=0,1,1676,1625;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T385I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	70 NC_045512 22775 . G A 49314.0 PASS AF=0.853479;DP=8579;DP4=496,663,3330,4089;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Aat\|D405N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	71 NC_045512 22786 . A C 49314.0 PASS AF=0.965444;DP=7524;DP4=19,20,3305,4170;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agA/agC\|R408S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	72 NC_045512 22792 . C T 49314.0 PASS AF=0.983602;DP=7501;DP4=2,1,3333,4164;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I410\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	73 NC_045512 22813 . G T 49314.0 PASS AF=0.986985;DP=7914;DP4=0,0,3588,4319;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K417N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	74 NC_045512 22882 . T G 49314.0 PASS AF=0.976932;DP=5072;DP4=4,8,2639,2420;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N440K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	75 NC_045512 22992 . G A 49314.0 PASS AF=0.983352;DP=4385;DP4=2,3,2107,2272;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGc/aAc\|S477N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	76 NC_045512 22995 . C A 49314.0 PASS AF=0.985318;DP=4359;DP4=1,0,2105,2251;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aAa\|T478K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	77 NC_045512 23013 . A C 49314.0 PASS AF=0.971480;DP=4453;DP4=17,16,2118,2294;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gCa\|E484A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	78 NC_045512 23040 . A G 49314.0 PASS AF=0.986637;DP=4490;DP4=0,2,2153,2335;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q493R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	79 NC_045512 23055 . A G 49314.0 PASS AF=0.983106;DP=4262;DP4=1,1,2069,2191;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q498R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	80 NC_045512 23063 . A T 49314.0 PASS AF=0.992556;DP=4030;DP4=0,0,1975,2053;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N501Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	81 NC_045512 23075 . T C 49314.0 PASS AF=0.975079;DP=4093;DP4=2,2,2038,2047;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y505H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	82 NC_045512 23403 . A G 32080.0 PASS AF=0.981756;DP=877;DP4=0,0,411,466;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	83 NC_045512 23525 . C T 31898.0 PASS AF=0.982916;DP=878;DP4=1,0,442,434;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H655Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	84 NC_045512 23599 . T G 49314.0 PASS AF=0.984131;DP=3970;DP4=1,1,2073,1895;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N679K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	85 NC_045512 23604 . C A 49314.0 PASS AF=0.984480;DP=3866;DP4=0,1,2017,1845;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cAt\|P681H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	86 NC_045512 23854 . C A 49314.0 PASS AF=0.975383;DP=3006;DP4=5,5,1472,1519;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaC/aaA\|N764K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	87 NC_045512 23948 . G T 49314.0 PASS AF=0.978654;DP=3045;DP4=0,0,1551,1490;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D796Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	88 NC_045512 24424 . A T 49314.0 PASS AF=0.984966;DP=6585;DP4=3,3,3360,3219;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caA/caT\|Q954H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	89 NC_045512 24469 . T A 49314.0 PASS AF=0.981200;DP=7181;DP4=0,0,3618,3562;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N969K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	90 NC_045512 24966 . A G 49314.0 PASS AF=0.969872;DP=3983;DP4=3,5,1951,2000;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aGc\|N1135S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	91 NC_045512 25000 . C T 49314.0 PASS AF=0.982474;DP=3937;DP4=0,2,1940,1995;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1146\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	92 NC_045512 25584 . C T 49314.0 PASS AF=0.969027;DP=4972;DP4=2,2,2628,2338;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acC/acT\|T64\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	93 NC_045512 26060 . C T 49314.0 PASS AF=0.984340;DP=4917;DP4=3,3,2409,2502;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T223I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	94 NC_045512 26195 . C T 49314.0 PASS AF=0.978567;DP=1773;DP4=1,1,889,882;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T268M\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	95 NC_045512 26270 . C T 49314.0 PASS AF=0.986331;DP=1829;DP4=1,0,942,885;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T9I\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	96 NC_045512 26571 . C T 19089.0 PASS AF=0.257871;DP=2668;DP4=957,1013,332,366;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L17F\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	97 NC_045512 26577 . C G 49314.0 PASS AF=0.972893;DP=2693;DP4=0,0,1280,1374;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q19E\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	98 NC_045512 26709 . G A 49314.0 PASS AF=0.977913;DP=5433;DP4=4,3,2855,2569;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A63T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	99 NC_045512 26801 . C T 49314.0 PASS AF=0.983187;DP=5829;DP4=1,0,2894,2931;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L93\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	100 NC_045512 26858 . C T 49314.0 PASS AF=0.989801;DP=5687;DP4=3,3,2686,2994;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F112\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	101 NC_045512 27259 . A C 49314.0 PASS AF=0.973431;DP=5721;DP4=14,21,2604,3071;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Agg/Cgg\|R20\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	102 NC_045512 27382 . G C 49314.0 PASS AF=0.987069;DP=1624;DP4=0,0,798,826;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Cat\|D61H\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	103 NC_045512 27383 . A T 49314.0 PASS AF=0.974439;DP=1604;DP4=0,0,788,816;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D61V\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	104 NC_045512 27384 . T C 49314.0 PASS AF=0.985339;DP=1637;DP4=2,0,807,828;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D61\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	105 NC_045512 27481 . C T 49314.0 PASS AF=0.984321;DP=1722;DP4=0,0,863,858;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L30F\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	106 NC_045512 27549 . C T 49314.0 PASS AF=0.986065;DP=4234;DP4=1,0,2141,2076;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N52\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	107 NC_045512 27807 . C T 49314.0 PASS AF=0.985981;DP=2354;DP4=1,1,1167,1184;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L18\|43\|ORF7b\|protein_coding\|CODING\|GU280_gp08\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	108 NC_045512 28271 . A T 49314.0 PASS AF=0.985745;DP=7857;DP4=8,11,3861,3975;SB=1
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	109 NC_045512 28311 . C T 49314.0 PASS AF=0.957243;DP=7297;DP4=7,4,3570,3710;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cTc\|P13L\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	110 NC_045512 28361 . GGAGAACGCA G 49314.0 PASS AF=0.830892;DP=6280;DP4=717,401,2253,2965;HRUN=2;SB=365;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggagaacgcagt/ggt\|GERS30G\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	111 NC_045512 28657 . C T 49314.0 PASS AF=0.975592;DP=5531;DP4=3,2,2828,2694;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D128\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	112 NC_045512 28881 . G A 49314.0 PASS AF=0.977910;DP=2354;DP4=0,0,1161,1193;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGg/aAg\|R203K\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	113 NC_045512 28882 . G A 49314.0 PASS AF=0.978916;DP=2324;DP4=0,2,1147,1175;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R203\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	114 NC_045512 28883 . G C 49314.0 PASS AF=0.981528;DP=2382;DP4=0,0,1174,1207;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gga/Cga\|G204R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	115 NC_045512 29510 . A C 49314.0 PASS AF=0.977301;DP=7181;DP4=2,2,3340,3833;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Agt/Cgt\|S413R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	116 NC_045512 29733 . CGAGGCCACGCGGAGTACGATCGAGTG C 49314.0 PASS AF=0.991870;DP=2091;DP4=516,513,868,1206;HRUN=1;SB=48;INDEL

Mercurial > repos > iuc > virheat

annotate test-data/day_55.vcf @ 1:30584e80d61e draft